Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0321830 | Msa0413740 | 0.813262 | 2.797797e-51 | -8.615850e-47 |
| Msa0321830 | Msa0505390 | 0.814054 | 1.873299e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAAAGTCATTTCCTTTC+TGG | 0.050410 | 2_4:+23753981 | None:intergenic |
| CTTCTCTATGCCACAACTTT+AGG | 0.208040 | 2_4:+23753924 | None:intergenic |
| ATAAAGATTGAAACTTAATT+TGG | 0.258274 | 2_4:+23757530 | None:intergenic |
| CCAGGAACAATCCTGGTTTC+AGG | 0.291918 | 2_4:-23757486 | Msa0321830:intron |
| TATTACAGTACTGGAATTCA+TGG | 0.323839 | 2_4:-23757379 | Msa0321830:intron |
| GGACAATAGCATACCCCTTA+TGG | 0.326839 | 2_4:+23757332 | None:intergenic |
| ATGGATGTTGATGAAGAAAA+TGG | 0.359964 | 2_4:+23757351 | None:intergenic |
| TTCTTCATCAACATCCATAA+GGG | 0.368786 | 2_4:-23757346 | Msa0321830:CDS |
| CCAGAAAGGAAATGACTTTG+AGG | 0.390903 | 2_4:-23753981 | Msa0321830:CDS |
| GATGTGTATTTATAGGATTA+GGG | 0.404772 | 2_4:-23754009 | Msa0321830:intron |
| TTGGATGGGATGGGGAAGAA+TGG | 0.406269 | 2_4:+23757659 | None:intergenic |
| CCTGAAACCAGGATTGTTCC+TGG | 0.408939 | 2_4:+23757486 | None:intergenic |
| TTTCTTCATCAACATCCATA+AGG | 0.416458 | 2_4:-23757347 | Msa0321830:CDS |
| GGGATGGGGAAGAATGGATA+TGG | 0.423142 | 2_4:+23757665 | None:intergenic |
| TGCAATGCCAGGAACAATCC+TGG | 0.492768 | 2_4:-23757493 | Msa0321830:exon |
| GTGACTTGCTCCTAAAGTTG+TGG | 0.517927 | 2_4:-23753934 | Msa0321830:CDS |
| CATACATTCAACTCTAGCAT+AGG | 0.595307 | 2_4:+23757593 | None:intergenic |
| TCTTCATCAACATCCATAAG+GGG | 0.601384 | 2_4:-23757345 | Msa0321830:intron |
| AAAATTCAGTACCTGAAACC+AGG | 0.621327 | 2_4:+23757475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATTTTGTGTATAT+TGG | - | chr2_4:23754371-23754390 | Msa0321830:intron | 10.0% |
| !! | NNNNNNNNNNTAGAATAAAG+AGG | - | chr2_4:23754787-23754806 | Msa0321830:intron | 10.0% |
| !!! | TTTTGAAAAAAGATTTTAAA+AGG | - | chr2_4:23756131-23756150 | Msa0321830:intron | 10.0% |
| !!! | TTTTTATTTATATGTTACAT+AGG | - | chr2_4:23756462-23756481 | Msa0321830:intron | 10.0% |
| !! | AATTAAAAAAAGAAATACAA+AGG | - | chr2_4:23756643-23756662 | Msa0321830:intron | 10.0% |
| !! | ATTAAAAAAAGAAATACAAA+GGG | - | chr2_4:23756644-23756663 | Msa0321830:intron | 10.0% |
| !! | ATAAAGATTGAAACTTAATT+TGG | + | chr2_4:23754020-23754039 | None:intergenic | 15.0% |
| !! | GAAATTAAAAGAAAATAAGT+TGG | - | chr2_4:23754825-23754844 | Msa0321830:intron | 15.0% |
| !!! | TTTTTTAATTGAATGAAAAG+TGG | - | chr2_4:23756185-23756204 | Msa0321830:intron | 15.0% |
| !! | TATGCAATAAAAATAAATGA+CGG | - | chr2_4:23756505-23756524 | Msa0321830:intron | 15.0% |
| !! | ATGCAATAATATAAATGAAA+AGG | - | chr2_4:23756994-23757013 | Msa0321830:intron | 15.0% |
| !! | TGCAATAATATAAATGAAAA+GGG | - | chr2_4:23756995-23757014 | Msa0321830:intron | 15.0% |
| !!! | AGTTTTATTTCAATTTCAAT+AGG | + | chr2_4:23757427-23757446 | None:intergenic | 15.0% |
| !!! | TTTTTAACTTTTGTTTCAAG+TGG | + | chr2_4:23753930-23753949 | None:intergenic | 20.0% |
| !! | TAAAAAAGAAAATCAACATG+TGG | + | chr2_4:23754130-23754149 | None:intergenic | 20.0% |
| !!! | ATTGATTTTTATTACAGTAC+TGG | - | chr2_4:23754159-23754178 | Msa0321830:intron | 20.0% |
| !! | ATTAAAATTAGAGACTTACA+AGG | + | chr2_4:23754360-23754379 | None:intergenic | 20.0% |
| !!! | CGATTTGATTTTTAAAATTC+AGG | - | chr2_4:23754621-23754640 | Msa0321830:intron | 20.0% |
| !! | GTTGAGATTTATATATAAAG+AGG | - | chr2_4:23754847-23754866 | Msa0321830:intron | 20.0% |
| !!! | AATTAGATTTTACATGTTGT+AGG | - | chr2_4:23755038-23755057 | Msa0321830:intron | 20.0% |
| !! | TTACAACTTTATGACATTAA+TGG | + | chr2_4:23755454-23755473 | None:intergenic | 20.0% |
| !!! | TGAGCTTTATTTAAAAGAAA+GGG | - | chr2_4:23755784-23755803 | Msa0321830:intron | 20.0% |
| !!! | TACCTTATTTTGAAAAGTTT+AGG | - | chr2_4:23755819-23755838 | Msa0321830:intron | 20.0% |
| !!! | ACCTTATTTTGAAAAGTTTA+GGG | - | chr2_4:23755820-23755839 | Msa0321830:intron | 20.0% |
| !! | AAACGTTAAATAAAACCAAA+AGG | + | chr2_4:23755911-23755930 | None:intergenic | 20.0% |
| !! | AATAATGAGATGTACATAAA+TGG | - | chr2_4:23755957-23755976 | Msa0321830:intron | 20.0% |
| !!! | TGATTTTTATTTGATTTGAG+AGG | - | chr2_4:23756016-23756035 | Msa0321830:intron | 20.0% |
| !! | AAAAAAGAAAAAAGATCACT+TGG | - | chr2_4:23756253-23756272 | Msa0321830:intron | 20.0% |
| !! | AAAGCATGAAAATAAACTAA+CGG | - | chr2_4:23756324-23756343 | Msa0321830:intron | 20.0% |
| !!! | GTGTTATTGCTTTATTATAA+GGG | + | chr2_4:23756403-23756422 | None:intergenic | 20.0% |
| !!! | TGTGTTATTGCTTTATTATA+AGG | + | chr2_4:23756404-23756423 | None:intergenic | 20.0% |
| !!! | TTTATGATTGAATCTCTTTT+TGG | - | chr2_4:23756679-23756698 | Msa0321830:intron | 20.0% |
| !! | AATATAAATGAAAAGGGAAT+TGG | - | chr2_4:23757001-23757020 | Msa0321830:intron | 20.0% |
| !! | CAAATAACTAACATTAACAA+TGG | - | chr2_4:23757101-23757120 | Msa0321830:intron | 20.0% |
| !! | AGCAAAACATATTTGTAAAA+CGG | - | chr2_4:23757219-23757238 | Msa0321830:intron | 20.0% |
| !! | GTTCAGAACTATTAAAAATA+CGG | - | chr2_4:23757394-23757413 | Msa0321830:intron | 20.0% |
| !! | AAACTGAAAACTTAAAAACT+AGG | - | chr2_4:23757442-23757461 | Msa0321830:intron | 20.0% |
| !! | AACTGAAAACTTAAAAACTA+GGG | - | chr2_4:23757443-23757462 | Msa0321830:intron | 20.0% |
| !! | GAAAAATGGAAATTTTGGAT+GGG | + | chr2_4:23753905-23753924 | None:intergenic | 25.0% |
| !! | TGAAAAATGGAAATTTTGGA+TGG | + | chr2_4:23753906-23753925 | None:intergenic | 25.0% |
| !! | TGGTTGAAAAATGGAAATTT+TGG | + | chr2_4:23753910-23753929 | None:intergenic | 25.0% |
| ! | TAAGGAAAAATTTAGAAGCA+AGG | + | chr2_4:23754239-23754258 | None:intergenic | 25.0% |
| !! | TTGTTATTAAACGTAACGAT+TGG | - | chr2_4:23754465-23754484 | Msa0321830:intron | 25.0% |
| ! | TGTTATTAAACGTAACGATT+GGG | - | chr2_4:23754466-23754485 | Msa0321830:intron | 25.0% |
| !! | TTTAAAATTCAGGATTCTGA+AGG | - | chr2_4:23754631-23754650 | Msa0321830:intron | 25.0% |
| ! | TTAAAATTCAGGATTCTGAA+GGG | - | chr2_4:23754632-23754651 | Msa0321830:intron | 25.0% |
| ! | NNNTAGAATAAAGAGGCTTT+AGG | - | chr2_4:23754794-23754813 | Msa0321830:intron | 25.0% |
| ! | NNTAGAATAAAGAGGCTTTA+GGG | - | chr2_4:23754795-23754814 | Msa0321830:intron | 25.0% |
| ! | AGAGTCATAGTTAGAAAATA+AGG | - | chr2_4:23754870-23754889 | Msa0321830:intron | 25.0% |
| !! | TGTCAATTAATCTAAGGTAA+GGG | - | chr2_4:23754975-23754994 | Msa0321830:intron | 25.0% |
| ! | ATCATCCTAATGATTATCTA+AGG | + | chr2_4:23755144-23755163 | None:intergenic | 25.0% |
| !! | GATAATTAGAATCAGTTTTG+AGG | - | chr2_4:23755161-23755180 | Msa0321830:intron | 25.0% |
| ! | CTTATATGACTCCAATAATT+TGG | + | chr2_4:23755512-23755531 | None:intergenic | 25.0% |
| !!! | CTGAGCTTTATTTAAAAGAA+AGG | - | chr2_4:23755783-23755802 | Msa0321830:intron | 25.0% |
| !!! | GAGCTTTATTTAAAAGAAAG+GGG | - | chr2_4:23755785-23755804 | Msa0321830:intron | 25.0% |
| !! | ACCCTAAACTTTTCAAAATA+AGG | + | chr2_4:23755824-23755843 | None:intergenic | 25.0% |
| !!! | ATTTTGAAAAGTTTAGGGTT+CGG | - | chr2_4:23755825-23755844 | Msa0321830:intron | 25.0% |
| !!! | TTTTAAAAGGAAAAGCCAAA+TGG | - | chr2_4:23756144-23756163 | Msa0321830:intron | 25.0% |
| ! | CATAGATTTAGCATGTAAAT+AGG | + | chr2_4:23756489-23756508 | None:intergenic | 25.0% |
| ! | AACATGTAATTGTATTGGAA+TGG | - | chr2_4:23757046-23757065 | Msa0321830:intron | 25.0% |
| ! | GTATTGGAATGGAAATATAT+AGG | - | chr2_4:23757057-23757076 | Msa0321830:intron | 25.0% |
| ! | GAATATATGATAGAGAAACA+AGG | - | chr2_4:23757146-23757165 | Msa0321830:intron | 25.0% |
| ! | GGAATTAGAATTGAATTTGA+AGG | - | chr2_4:23757307-23757326 | Msa0321830:intron | 25.0% |
| ! | TGGTTATGATGTGTATTTAT+AGG | - | chr2_4:23757531-23757550 | Msa0321830:five_prime_UTR | 25.0% |
| ! | TGATGTGTATTTATAGGATT+AGG | - | chr2_4:23757537-23757556 | Msa0321830:five_prime_UTR | 25.0% |
| ! | GATGTGTATTTATAGGATTA+GGG | - | chr2_4:23757538-23757557 | Msa0321830:five_prime_UTR | 25.0% |
| !!! | AGAGAAGAGAAAGATTTTTT+TGG | - | chr2_4:23757639-23757658 | Msa0321830:five_prime_UTR | 25.0% |
| ! | TGTTTCAAGTGGTTGAAAAA+TGG | + | chr2_4:23753919-23753938 | None:intergenic | 30.0% |
| ! | TATTACAGTACTGGAATTCA+TGG | - | chr2_4:23754168-23754187 | Msa0321830:intron | 30.0% |
| ! | ATGGATGTTGATGAAGAAAA+TGG | + | chr2_4:23754199-23754218 | None:intergenic | 30.0% |
| TTTCTTCATCAACATCCATA+AGG | - | chr2_4:23754200-23754219 | Msa0321830:intron | 30.0% | |
| TTCTTCATCAACATCCATAA+GGG | - | chr2_4:23754201-23754220 | Msa0321830:intron | 30.0% | |
| AGTTGACAATAGGAAGAATA+AGG | + | chr2_4:23754257-23754276 | None:intergenic | 30.0% | |
| CCATTTAAGAAGTTGACAAT+AGG | + | chr2_4:23754267-23754286 | None:intergenic | 30.0% | |
| CCTATTGTCAACTTCTTAAA+TGG | - | chr2_4:23754264-23754283 | Msa0321830:intron | 30.0% | |
| GAGTATGAAATCAATGACAA+AGG | - | chr2_4:23754326-23754345 | Msa0321830:intron | 30.0% | |
| TGACACTGACACATAAATAT+TGG | - | chr2_4:23754426-23754445 | Msa0321830:intron | 30.0% | |
| !! | ATGTTTTCTATCAGAAGTGT+CGG | - | chr2_4:23754512-23754531 | Msa0321830:intron | 30.0% |
| AGAATTTGGTATGACTTATC+TGG | + | chr2_4:23754540-23754559 | None:intergenic | 30.0% | |
| TAAAAATCAAATCGTCACGA+AGG | + | chr2_4:23754615-23754634 | None:intergenic | 30.0% | |
| ! | CTGTCAATTAATCTAAGGTA+AGG | - | chr2_4:23754974-23754993 | Msa0321830:intron | 30.0% |
| ACAGACCTTAGATAATCATT+AGG | - | chr2_4:23755136-23755155 | Msa0321830:intron | 30.0% | |
| ! | GATGAGATTAGGTGAATTTT+TGG | - | chr2_4:23755279-23755298 | Msa0321830:intron | 30.0% |
| TAAGATGTCGTCCAAATTAT+TGG | - | chr2_4:23755498-23755517 | Msa0321830:intron | 30.0% | |
| ! | AGCTTTTGCTCAATTATGTT+GGG | - | chr2_4:23755615-23755634 | Msa0321830:intron | 30.0% |
| ATAATTGAGCAAAAGCTCTA+GGG | + | chr2_4:23755650-23755669 | None:intergenic | 30.0% | |
| ! | AGCTTTTGCTCAATTATGTT+GGG | - | chr2_4:23755615-23755634 | Msa0321830:intron | 30.0% |
| !! | TTTTGAAAAGTTTAGGGTTC+GGG | - | chr2_4:23755826-23755845 | Msa0321830:intron | 30.0% |
| ! | TAGAGTACTACGAACATAAA+GGG | + | chr2_4:23755882-23755901 | None:intergenic | 30.0% |
| !!! | GGGTAGAAATTGTTTTTTGT+TGG | - | chr2_4:23756088-23756107 | Msa0321830:intron | 30.0% |
| GACTCAAAGTATGATTAGAT+TGG | - | chr2_4:23756207-23756226 | Msa0321830:intron | 30.0% | |
| !!! | ATCACTTGGTTTTAGAATCA+AGG | - | chr2_4:23756267-23756286 | Msa0321830:intron | 30.0% |
| CTTTATTATAAGGGACTTTG+TGG | + | chr2_4:23756394-23756413 | None:intergenic | 30.0% | |
| GATTCAATCATAAAGAGAAC+CGG | + | chr2_4:23756673-23756692 | None:intergenic | 30.0% | |
| ! | TTGTTGCAGTTATTTCACTT+CGG | + | chr2_4:23756838-23756857 | None:intergenic | 30.0% |
| ! | ACGACAGCAATTTGAAATAT+GGG | - | chr2_4:23756864-23756883 | Msa0321830:intron | 30.0% |
| ! | AGCAATTTGAAATATGGGTT+TGG | - | chr2_4:23756869-23756888 | Msa0321830:intron | 30.0% |
| CCAAATCGTGTATATTGATA+CGG | - | chr2_4:23757261-23757280 | Msa0321830:intron | 30.0% | |
| CAAATCGTGTATATTGATAC+GGG | - | chr2_4:23757262-23757281 | Msa0321830:intron | 30.0% | |
| TCCTTATATGACATGATTTG+AGG | + | chr2_4:23757290-23757309 | None:intergenic | 30.0% | |
| AACGTGAATGCAAAGAATAA+AGG | - | chr2_4:23757337-23757356 | Msa0321830:intron | 30.0% | |
| ACGTGAATGCAAAGAATAAA+GGG | - | chr2_4:23757338-23757357 | Msa0321830:intron | 30.0% | |
| AGAACTATTAAAAATACGGC+AGG | - | chr2_4:23757398-23757417 | Msa0321830:intron | 30.0% | |
| GAACTATTAAAAATACGGCA+GGG | - | chr2_4:23757399-23757418 | Msa0321830:intron | 30.0% | |
| !!! | GAGAAAGATTTTTTTGGACA+TGG | - | chr2_4:23757645-23757664 | Msa0321830:five_prime_UTR | 30.0% |
| ! | ATGGAAATTTTGGATGGGAT+GGG | + | chr2_4:23753900-23753919 | None:intergenic | 35.0% |
| ! | AATGGAAATTTTGGATGGGA+TGG | + | chr2_4:23753901-23753920 | None:intergenic | 35.0% |
| CATACATTCAACTCTAGCAT+AGG | + | chr2_4:23753957-23753976 | None:intergenic | 35.0% | |
| AAAATTCAGTACCTGAAACC+AGG | + | chr2_4:23754075-23754094 | None:intergenic | 35.0% | |
| TCTTCATCAACATCCATAAG+GGG | - | chr2_4:23754202-23754221 | Msa0321830:intron | 35.0% | |
| ATAAATGAATGCAGCTTCCA+TGG | - | chr2_4:23754295-23754314 | Msa0321830:intron | 35.0% | |
| TAAATGAATGCAGCTTCCAT+GGG | - | chr2_4:23754296-23754315 | Msa0321830:intron | 35.0% | |
| !! | TTCATACTCCATTTTTCCCA+TGG | + | chr2_4:23754315-23754334 | None:intergenic | 35.0% |
| ACAGGTCACAACATAGAATT+TGG | + | chr2_4:23754554-23754573 | None:intergenic | 35.0% | |
| TATGTTGTGACCTGTTTGTT+CGG | - | chr2_4:23754559-23754578 | Msa0321830:intron | 35.0% | |
| ! | GCAAACTGTTTTGTAGAAAG+AGG | - | chr2_4:23754900-23754919 | Msa0321830:intron | 35.0% |
| CCTTAGATTAATTGACAGCA+AGG | + | chr2_4:23754972-23754991 | None:intergenic | 35.0% | |
| ! | CCTTGCTGTCAATTAATCTA+AGG | - | chr2_4:23754969-23754988 | Msa0321830:intron | 35.0% |
| CAAAAATTCACCGAATCTCA+TGG | + | chr2_4:23755193-23755212 | None:intergenic | 35.0% | |
| !!! | CATGAGATTCGGTGAATTTT+TGG | - | chr2_4:23755191-23755210 | Msa0321830:intron | 35.0% |
| ACGATGCTTATGATGAGATT+AGG | - | chr2_4:23755268-23755287 | Msa0321830:intron | 35.0% | |
| CAACTTTGAATGAGTATGCA+TGG | + | chr2_4:23755578-23755597 | None:intergenic | 35.0% | |
| TGCATACTCATTCAAAGTTG+AGG | - | chr2_4:23755578-23755597 | Msa0321830:intron | 35.0% | |
| GCATACTCATTCAAAGTTGA+GGG | - | chr2_4:23755579-23755598 | Msa0321830:intron | 35.0% | |
| ATAATTGAGCAAAAGCTCCA+GGG | + | chr2_4:23755612-23755631 | None:intergenic | 35.0% | |
| ! | GAGCTTTTGCTCAATTATGT+TGG | - | chr2_4:23755614-23755633 | Msa0321830:intron | 35.0% |
| ! | GCTTTTGCTCAATTATGTTG+GGG | - | chr2_4:23755616-23755635 | Msa0321830:intron | 35.0% |
| ! | CTTTTGCTCAATTATGTTGG+GGG | - | chr2_4:23755617-23755636 | Msa0321830:intron | 35.0% |
| CATAATTGAGCAAAAGCTCT+AGG | + | chr2_4:23755651-23755670 | None:intergenic | 35.0% | |
| ! | GAGCTTTTGCTCAATTATGT+TGG | - | chr2_4:23755614-23755633 | Msa0321830:intron | 35.0% |
| ! | GCTTTTGCTCAATTATGTTG+GGG | - | chr2_4:23755616-23755635 | Msa0321830:intron | 35.0% |
| ! | CTTTTGCTCAATTATGTTGG+GGG | - | chr2_4:23755617-23755636 | Msa0321830:intron | 35.0% |
| !!! | ATGATTGTCGCGTCATTTTT+CGG | - | chr2_4:23755713-23755732 | Msa0321830:intron | 35.0% |
| ! | TTTGAAAAGTTTAGGGTTCG+GGG | - | chr2_4:23755827-23755846 | Msa0321830:intron | 35.0% |
| ! | GTAGAGTACTACGAACATAA+AGG | + | chr2_4:23755883-23755902 | None:intergenic | 35.0% |
| !! | TACGTGATTTTGATCCTTCA+CGG | + | chr2_4:23756063-23756082 | None:intergenic | 35.0% |
| AGGATCAAAATCACGTAGTT+CGG | - | chr2_4:23756066-23756085 | Msa0321830:intron | 35.0% | |
| AAGCCAAATGGTAAATAAGC+TGG | - | chr2_4:23756156-23756175 | Msa0321830:intron | 35.0% | |
| CAACCAGCTTATTTACCATT+TGG | + | chr2_4:23756162-23756181 | None:intergenic | 35.0% | |
| CAAATGGTAAATAAGCTGGT+TGG | - | chr2_4:23756160-23756179 | Msa0321830:intron | 35.0% | |
| ACCAAGAAAATAAATGTGCG+TGG | - | chr2_4:23756347-23756366 | Msa0321830:intron | 35.0% | |
| !! | TCCACGCACATTTATTTTCT+TGG | + | chr2_4:23756351-23756370 | None:intergenic | 35.0% |
| AATAAATGTGCGTGGACTTA+TGG | - | chr2_4:23756355-23756374 | Msa0321830:intron | 35.0% | |
| TCTATTCCATTCCAATTGCA+AGG | + | chr2_4:23756718-23756737 | None:intergenic | 35.0% | |
| !! | GTTTGTTTCTACTACCATGT+AGG | + | chr2_4:23756757-23756776 | None:intergenic | 35.0% |
| GTGAAATAACTGCAACAAGA+AGG | - | chr2_4:23756840-23756859 | Msa0321830:intron | 35.0% | |
| ! | CACGACAGCAATTTGAAATA+TGG | - | chr2_4:23756863-23756882 | Msa0321830:intron | 35.0% |
| TAGTAACGTTAGCAGCAAAA+TGG | - | chr2_4:23756895-23756914 | Msa0321830:intron | 35.0% | |
| GCAGCAACATGTAATTGTAT+TGG | - | chr2_4:23757041-23757060 | Msa0321830:intron | 35.0% | |
| ATAGGTAGCAGCAATATGAT+TGG | - | chr2_4:23757075-23757094 | Msa0321830:intron | 35.0% | |
| ! | AATGGAGCGTTAACAAGAAT+TGG | - | chr2_4:23757119-23757138 | Msa0321830:intron | 35.0% |
| ATTTGGATTGAATTCCCTTG+TGG | + | chr2_4:23757247-23757266 | None:intergenic | 35.0% | |
| CCGTATCAATATACACGATT+TGG | + | chr2_4:23757264-23757283 | None:intergenic | 35.0% | |
| GCCTCAAATCATGTCATATA+AGG | - | chr2_4:23757286-23757305 | Msa0321830:intron | 35.0% | |
| ! | TGCCTGAAAATTGTGTTGTT+GGG | - | chr2_4:23757485-23757504 | Msa0321830:intron | 35.0% |
| ! | TACCCAACAACACAATTTTC+AGG | + | chr2_4:23757490-23757509 | None:intergenic | 35.0% |
| AATTGTGTGTGTTTGTGTGT+TGG | - | chr2_4:23757511-23757530 | Msa0321830:exon | 35.0% | |
| ! | GACTTTGAGGAGAAGAAAAA+AGG | - | chr2_4:23757579-23757598 | Msa0321830:five_prime_UTR | 35.0% |
| !!! | GGACATGGACATTTTAAGTT+TGG | - | chr2_4:23757660-23757679 | Msa0321830:five_prime_UTR | 35.0% |
| ! | TGGAAATTTTGGATGGGATG+GGG | + | chr2_4:23753899-23753918 | None:intergenic | 40.0% |
| !! | AACCTATGTAGCATTGACAC+TGG | - | chr2_4:23754400-23754419 | Msa0321830:intron | 40.0% |
| AGACAACAAACCGAACAAAC+AGG | + | chr2_4:23754572-23754591 | None:intergenic | 40.0% | |
| ! | TGTTGTAGGTTGAGTTTGTG+AGG | - | chr2_4:23755052-23755071 | Msa0321830:intron | 40.0% |
| GAGGTTAGAACCATGAGATT+CGG | - | chr2_4:23755180-23755199 | Msa0321830:intron | 40.0% | |
| CATAATTGAGCAAAAGCTCC+AGG | + | chr2_4:23755613-23755632 | None:intergenic | 40.0% | |
| ! | TTGAAAAGTTTAGGGTTCGG+GGG | - | chr2_4:23755828-23755847 | Msa0321830:intron | 40.0% |
| ! | GGTTGGTTACATAAAGGGAA+GGG | - | chr2_4:23755849-23755868 | Msa0321830:intron | 40.0% |
| ! | AGTACTCTACGAGAACCTTT+TGG | - | chr2_4:23755893-23755912 | Msa0321830:intron | 40.0% |
| !! | ACGTGATTTTGATCCTTCAC+GGG | + | chr2_4:23756062-23756081 | None:intergenic | 40.0% |
| GGATCAAAATCACGTAGTTC+GGG | - | chr2_4:23756067-23756086 | Msa0321830:intron | 40.0% | |
| GATCAAAATCACGTAGTTCG+GGG | - | chr2_4:23756068-23756087 | Msa0321830:intron | 40.0% | |
| AAAGAAATACAAAGGGCCAC+CGG | - | chr2_4:23756651-23756670 | Msa0321830:intron | 40.0% | |
| TCAATCATAAAGAGAACCGG+TGG | + | chr2_4:23756670-23756689 | None:intergenic | 40.0% | |
| TAATTCATGTGTTTGCCACG+TGG | + | chr2_4:23756943-23756962 | None:intergenic | 40.0% | |
| GAATTGGAATTGAAACCGAG+CGG | - | chr2_4:23757017-23757036 | Msa0321830:intron | 40.0% | |
| ATAGAGAAACAAGGCAGCAA+TGG | - | chr2_4:23757155-23757174 | Msa0321830:intron | 40.0% | |
| ATTTGTAAAACGGCACCACA+AGG | - | chr2_4:23757229-23757248 | Msa0321830:intron | 40.0% | |
| TTTGTAAAACGGCACCACAA+GGG | - | chr2_4:23757230-23757249 | Msa0321830:intron | 40.0% | |
| GTGCCTGAAAATTGTGTTGT+TGG | - | chr2_4:23757484-23757503 | Msa0321830:intron | 40.0% | |
| CCTCAAAGTCATTTCCTTTC+TGG | + | chr2_4:23757569-23757588 | None:intergenic | 40.0% | |
| CCAGAAAGGAAATGACTTTG+AGG | - | chr2_4:23757566-23757585 | Msa0321830:five_prime_UTR | 40.0% | |
| CTTCTCTATGCCACAACTTT+AGG | + | chr2_4:23757626-23757645 | None:intergenic | 40.0% | |
| ! | ATTTTGCACTCTGCAATGCC+AGG | - | chr2_4:23754043-23754062 | Msa0321830:intron | 45.0% |
| GGACAATAGCATACCCCTTA+TGG | + | chr2_4:23754218-23754237 | None:intergenic | 45.0% | |
| TGCAGCTTCCATGGGAAAAA+TGG | - | chr2_4:23754304-23754323 | Msa0321830:intron | 45.0% | |
| GTCCAGTGTCAATGCTACAT+AGG | + | chr2_4:23754405-23754424 | None:intergenic | 45.0% | |
| GTCTTACATCGATCCGACAT+TGG | + | chr2_4:23754492-23754511 | None:intergenic | 45.0% | |
| TCGTCACGAAGGCTAGTAAT+GGG | + | chr2_4:23754604-23754623 | None:intergenic | 45.0% | |
| ATCGTCACGAAGGCTAGTAA+TGG | + | chr2_4:23754605-23754624 | None:intergenic | 45.0% | |
| CTCTGACTCTTCTCTTCTCT+AGG | + | chr2_4:23754931-23754950 | None:intergenic | 45.0% | |
| GAGAAGAGAAGAGTCAGAGA+AGG | - | chr2_4:23754932-23754951 | Msa0321830:intron | 45.0% | |
| !! | TTCGGGGGTTGGTTACATAA+AGG | - | chr2_4:23755843-23755862 | Msa0321830:intron | 45.0% |
| !! | TCGGGGGTTGGTTACATAAA+GGG | - | chr2_4:23755844-23755863 | Msa0321830:intron | 45.0% |
| !! | GGGTTGGTTACATAAAGGGA+AGG | - | chr2_4:23755848-23755867 | Msa0321830:intron | 45.0% |
| ! | TACCATGTAGGTGTTTGCTG+CGG | + | chr2_4:23756745-23756764 | None:intergenic | 45.0% |
| ATTCACTTCCAATCGCTTGC+TGG | + | chr2_4:23756786-23756805 | None:intergenic | 45.0% | |
| TCCAAACAAACAAAGCCACG+TGG | - | chr2_4:23756925-23756944 | Msa0321830:intron | 45.0% | |
| ! | GGATTAGGGTTTTGCCAGAA+AGG | - | chr2_4:23757552-23757571 | Msa0321830:five_prime_UTR | 45.0% |
| !! | GTGACTTGCTCCTAAAGTTG+TGG | - | chr2_4:23757613-23757632 | Msa0321830:five_prime_UTR | 45.0% |
| GGGATGGGGAAGAATGGATA+TGG | + | chr2_4:23753885-23753904 | None:intergenic | 50.0% | |
| TTGGATGGGATGGGGAAGAA+TGG | + | chr2_4:23753891-23753910 | None:intergenic | 50.0% | |
| TGCAATGCCAGGAACAATCC+TGG | - | chr2_4:23754054-23754073 | Msa0321830:intron | 50.0% | |
| CCTGAAACCAGGATTGTTCC+TGG | + | chr2_4:23754064-23754083 | None:intergenic | 50.0% | |
| CCAGGAACAATCCTGGTTTC+AGG | - | chr2_4:23754061-23754080 | Msa0321830:intron | 50.0% | |
| CGTAACGATTGGGCCAATGT+CGG | - | chr2_4:23754476-23754495 | Msa0321830:intron | 50.0% | |
| CGTCACGAAGGCTAGTAATG+GGG | + | chr2_4:23754603-23754622 | None:intergenic | 50.0% | |
| GGGAATGAAATATCGCGTGC+AGG | - | chr2_4:23754652-23754671 | Msa0321830:intron | 50.0% | |
| ! | AAAGTTTAGGGTTCGGGGGT+TGG | - | chr2_4:23755832-23755851 | Msa0321830:intron | 50.0% |
| TTGATCCTTCACGGGTACGT+AGG | + | chr2_4:23756054-23756073 | None:intergenic | 50.0% | |
| CCATTCCAATTGCAAGGTCG+TGG | + | chr2_4:23756712-23756731 | None:intergenic | 50.0% | |
| CCACGACCTTGCAATTGGAA+TGG | - | chr2_4:23756709-23756728 | Msa0321830:intron | 50.0% | |
| !! | GCCACGTGGCTTTGTTTGTT+TGG | + | chr2_4:23756929-23756948 | None:intergenic | 50.0% |
| AAGTTGAGGGCTTGATGCCC+TGG | - | chr2_4:23755592-23755611 | Msa0321830:intron | 55.0% | |
| CTTTGCCTACGTACCCGTGA+AGG | - | chr2_4:23756046-23756065 | Msa0321830:intron | 55.0% | |
| AGCAGCCACGACCTTGCAAT+TGG | - | chr2_4:23756704-23756723 | Msa0321830:intron | 55.0% | |
| TGCCGCAGCAAACACCTACA+TGG | - | chr2_4:23756740-23756759 | Msa0321830:intron | 55.0% | |
| ACACCACACCAGCAAGCGAT+TGG | - | chr2_4:23756775-23756794 | Msa0321830:intron | 55.0% | |
| ! | CTTCCAATCGCTTGCTGGTG+TGG | + | chr2_4:23756781-23756800 | None:intergenic | 55.0% |
| TTACATGTTGCTGCGCCGCT+CGG | + | chr2_4:23757035-23757054 | None:intergenic | 55.0% | |
| ! | GCGTGGACTTATGGTGACGC+TGG | - | chr2_4:23756364-23756383 | Msa0321830:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 23753871 | 23757698 | 23753871 | ID=Msa0321830;Name=Msa0321830 |
| chr2_4 | mRNA | 23753871 | 23757698 | 23753871 | ID=Msa0321830-mRNA-1;Parent=Msa0321830;Name=Msa0321830-mRNA-1;_AED=0.34;_eAED=0.34;_QI=187|0.5|0.66|0.66|0.5|0.66|3|0|72 |
| chr2_4 | exon | 23753871 | 23754016 | 23753871 | ID=Msa0321830-mRNA-1:exon:8594;Parent=Msa0321830-mRNA-1 |
| chr2_4 | exon | 23757346 | 23757393 | 23757346 | ID=Msa0321830-mRNA-1:exon:8593;Parent=Msa0321830-mRNA-1 |
| chr2_4 | exon | 23757487 | 23757698 | 23757487 | ID=Msa0321830-mRNA-1:exon:8592;Parent=Msa0321830-mRNA-1 |
| chr2_4 | five_prime_UTR | 23757512 | 23757698 | 23757512 | ID=Msa0321830-mRNA-1:five_prime_utr;Parent=Msa0321830-mRNA-1 |
| chr2_4 | CDS | 23757487 | 23757511 | 23757487 | ID=Msa0321830-mRNA-1:cds;Parent=Msa0321830-mRNA-1 |
| chr2_4 | CDS | 23757346 | 23757393 | 23757346 | ID=Msa0321830-mRNA-1:cds;Parent=Msa0321830-mRNA-1 |
| chr2_4 | CDS | 23753871 | 23754016 | 23753871 | ID=Msa0321830-mRNA-1:cds;Parent=Msa0321830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
