AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0413740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413740 MtrunA17_Chr3g0106291 96.764 309 9 1 1 308 1 309 0.0 617
Msa0413740 MtrunA17_Chr1g0154711 35.789 285 163 6 30 308 235 505 1.09e-44 159
Msa0413740 MtrunA17_Chr5g0403781 38.672 256 135 7 61 308 206 447 5.17e-44 155
Msa0413740 MtrunA17_Chr2g0278991 32.836 268 146 9 51 305 1041 1287 2.78e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413740 AT2G30170.1 63.668 289 100 3 23 308 12 298 4.70e-130 372
Msa0413740 AT2G30170.3 67.421 221 71 1 89 308 1 221 1.88e-109 317
Msa0413740 AT2G30170.5 62.882 229 80 3 23 248 12 238 1.97e-95 283
Msa0413740 AT2G30170.6 69.231 195 59 1 55 248 9 203 1.42e-94 280
Msa0413740 AT2G30170.4 63.684 190 65 2 23 210 12 199 1.27e-79 241
Msa0413740 AT2G30170.2 66.456 158 52 1 152 308 1 158 7.67e-76 229
Msa0413740 AT2G30170.7 67.702 161 51 1 89 248 1 161 1.27e-74 227
Msa0413740 AT4G16580.1 40.945 254 131 5 61 308 221 461 5.99e-51 175
Msa0413740 AT5G66720.2 33.013 312 176 6 4 308 126 411 2.74e-48 166
Msa0413740 AT5G66720.1 33.758 314 174 7 4 308 126 414 1.28e-47 165
Msa0413740 AT4G33500.1 34.000 250 142 9 61 303 484 717 4.16e-31 123

Find 84 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATGTTGTACATAATATT+TGG 0.167472 3_2:+58204262 Msa0413740:three_prime_UTR
CAGAACTTAACCCTGTAATT+AGG 0.272580 3_2:+58200827 Msa0413740:CDS
GCTGTTGCTGATGGTGTCTC+TGG 0.289126 3_2:+58201143 Msa0413740:CDS
ATTATTCCCACGTGAATTGA+TGG 0.323223 3_2:+58201580 Msa0413740:CDS
CCATGGTGGAAGAAAGTTCT+TGG 0.345245 3_2:+58203864 Msa0413740:CDS
GAGTTAACACACCTAATTAC+AGG 0.352628 3_2:-58200838 None:intergenic
TTCTTTGTGAGCAACTATAA+TGG 0.354294 3_2:+58201110 Msa0413740:CDS
ATGATCCTCAGATTCTTATA+AGG 0.360349 3_2:+58201856 Msa0413740:CDS
CCATTGCATCAAGGTATGTT+TGG 0.361695 3_2:-58202314 None:intergenic
CTATTGATGAAAATGCTAAA+AGG 0.368498 3_2:+58200773 Msa0413740:CDS
TTCAATATTGAGAGCTGTAA+TGG 0.381901 3_2:+58200702 Msa0413740:CDS
TATTACTGTAATTGTTGGTC+AGG 0.384653 3_2:+58203995 Msa0413740:CDS
CTCTCAGAGCTCAGTTGGTA+TGG 0.396619 3_2:-58202285 None:intergenic
GGTAAGTAATGTGGAGTTGA+TGG 0.402055 3_2:+58203235 Msa0413740:intron
AACATGAGATATTACCATTA+CGG 0.404411 3_2:-58202122 None:intergenic
CAACGGTTAGAGCAATTTCA+TGG 0.406391 3_2:-58203310 None:intergenic
GATGATATTACTGTAATTGT+TGG 0.415329 3_2:+58203990 Msa0413740:CDS
AGCAAAGGCATTAGCTAACT+TGG 0.423045 3_2:+58203442 Msa0413740:intron
CTCTGGTGATCTTAACAATC+AGG 0.429033 3_2:-58204078 None:intergenic
TCTTGAAGGTTGAGAAAGGT+GGG 0.444907 3_2:+58201078 Msa0413740:intron
AACAAAGATGTTTCTGAGGC+TGG 0.460161 3_2:+58203335 Msa0413740:CDS
ATTGCCAATGTTGGTGATTG+TGG 0.466988 3_2:+58202087 Msa0413740:CDS
ACTTAAGGCAACTCCTTCTC+TGG 0.471321 3_2:-58204095 None:intergenic
GCCCTTGCCTCCAATGAATA+CGG 0.481855 3_2:-58203500 None:intergenic
GTGAAGCATCATTGCTATGC+TGG 0.481916 3_2:+58202044 Msa0413740:intron
TTGCTATGCTGGAAAAGAAT+GGG 0.485820 3_2:+58202055 Msa0413740:CDS
CATGGTGGAAGAAAGTTCTT+GGG 0.496365 3_2:+58203865 Msa0413740:CDS
ACAATTGTCATGGGATCTGA+TGG 0.498716 3_2:+58203266 Msa0413740:CDS
AGAGGGAGTTGAAGTTAAAG+TGG 0.503608 3_2:+58200665 Msa0413740:five_prime_UTR
TTAGTGCCACGGTATACTTA+AGG 0.503627 3_2:-58204110 None:intergenic
TTCTTGAAGGTTGAGAAAGG+TGG 0.504622 3_2:+58201077 Msa0413740:intron
GGAGTTATTGCTGTTGCTGA+TGG 0.506025 3_2:+58201134 Msa0413740:CDS
ATTGCTATGCTGGAAAAGAA+TGG 0.507571 3_2:+58202054 Msa0413740:CDS
GGATTACGAGTTATCCGTAA+TGG 0.510558 3_2:+58202108 Msa0413740:CDS
ATGAAGCTCTACATACTTCA+CGG 0.511085 3_2:-58204185 None:intergenic
CTGTTGCTGATGGTGTCTCT+GGG 0.512852 3_2:+58201144 Msa0413740:CDS
TGATTCTCCGTATTCATTGG+AGG 0.517203 3_2:+58203493 Msa0413740:CDS
AATTCACGTGGGAATAATGA+AGG 0.517953 3_2:-58201575 None:intergenic
CTCCGTATTCATTGGAGGCA+AGG 0.518397 3_2:+58203498 Msa0413740:CDS
GCTTCACAGTTGGGCTGAAG+AGG 0.521493 3_2:+58201544 Msa0413740:intron
TCCGTATTCATTGGAGGCAA+GGG 0.535770 3_2:+58203499 Msa0413740:CDS
TATACCGTGGCACTAAACTT+TGG 0.536254 3_2:+58204117 Msa0413740:three_prime_UTR
TGTTTCTTGAAGGTTGAGAA+AGG 0.536545 3_2:+58201074 Msa0413740:intron
GTAATGTTCTTGTGGAGAAG+TGG 0.542397 3_2:-58202253 None:intergenic
CAACCCTCTCAGAGCTCAGT+TGG 0.543171 3_2:-58202290 None:intergenic
GAGTTGAAGTTAAAGTGGTA+AGG 0.543527 3_2:+58200670 Msa0413740:five_prime_UTR
GAAGTTAAAGTGGTAAGGAA+TGG 0.545965 3_2:+58200675 Msa0413740:exon
GTTCTTGGGATGAAGTTGAC+AGG 0.546334 3_2:+58203879 Msa0413740:CDS
GGAAGGAGACACAATTGTCA+TGG 0.550201 3_2:+58203256 Msa0413740:CDS
TAAAGGCATTCAGCTTACAT+TGG 0.551771 3_2:-58204366 None:intergenic
AGAAACATCTTTGTTTGCAA+CGG 0.553090 3_2:-58203327 None:intergenic
CATGCTGCTACATTCTCTAC+AGG 0.556023 3_2:+58201885 Msa0413740:CDS
GTGTGAATGTGAAGAATAGA+GGG 0.560295 3_2:+58200648 Msa0413740:five_prime_UTR
CAGTCAAAGTAATGTTCTTG+TGG 0.563107 3_2:-58202261 None:intergenic
TCTCAGAGCTCAGTTGGTAT+GGG 0.569458 3_2:-58202284 None:intergenic
CTTGAAGGTTGAGAAAGGTG+GGG 0.569673 3_2:+58201079 Msa0413740:intron
GCAAAGCAAGAGAACTTCCA+TGG 0.570066 3_2:-58204163 None:intergenic
TGTGTGAATGTGAAGAATAG+AGG 0.570195 3_2:+58200647 Msa0413740:five_prime_UTR
TAAATGTTACCATTGCATCA+AGG 0.570236 3_2:-58202323 None:intergenic
AATCTAAAGATTGCCAATGT+TGG 0.572338 3_2:+58202078 Msa0413740:CDS
TACATAATATTTGGAACCAG+TGG 0.574189 3_2:+58204271 Msa0413740:three_prime_UTR
TTTGTGAGCAACTATAATGG+TGG 0.577961 3_2:+58201113 Msa0413740:CDS
AGTAATGTGGAGTTGATGGA+AGG 0.579559 3_2:+58203239 Msa0413740:CDS
CCAAACATACCTTGATGCAA+TGG 0.590788 3_2:+58202314 Msa0413740:CDS
TTCATTGGAGGCAAGGGCCA+AGG 0.591316 3_2:+58203505 Msa0413740:CDS
CTTGGCAAACAGTCATGCAA+TGG 0.591819 3_2:+58203460 Msa0413740:CDS
CCAAGAACTTTCTTCCACCA+TGG 0.595236 3_2:-58203864 None:intergenic
GAAGGAGACACAATTGTCAT+GGG 0.599986 3_2:+58203257 Msa0413740:CDS
ATTGTTAAGATCACCAGAGA+AGG 0.600071 3_2:+58204082 Msa0413740:three_prime_UTR
TAATCCACAATCACCAACAT+TGG 0.602187 3_2:-58202091 None:intergenic
CAACTGAGCTCTGAGAGGGT+TGG 0.619782 3_2:+58202291 Msa0413740:CDS
TGCAAACAAAGATGTTTCTG+AGG 0.619881 3_2:+58203331 Msa0413740:CDS
AGTTAACACACCTAATTACA+GGG 0.621910 3_2:-58200837 None:intergenic
ATACCAACTGAGCTCTGAGA+GGG 0.631786 3_2:+58202287 Msa0413740:CDS
TTGATGAAAATGCTAAAAGG+AGG 0.632849 3_2:+58200776 Msa0413740:CDS
GCTTTCCTTATAAGAATCTG+AGG 0.633109 3_2:-58201861 None:intergenic
ATGACCAAAGTTTAGTGCCA+CGG 0.636017 3_2:-58204121 None:intergenic
CAATTGTCATGGGATCTGAT+GGG 0.648322 3_2:+58203267 Msa0413740:CDS
GCATTAGCCATCAATTCACG+TGG 0.652412 3_2:-58201587 None:intergenic
ATTATGCTGTAAAGAAAACA+AGG 0.653479 3_2:+58204054 Msa0413740:three_prime_UTR
CATACCAACTGAGCTCTGAG+AGG 0.655681 3_2:+58202286 Msa0413740:CDS
GAAGATATGTTATGAATGTG+TGG 0.660697 3_2:-58200751 None:intergenic
CATTAGCCATCAATTCACGT+GGG 0.738708 3_2:-58201586 None:intergenic
GAGTTGCCTTAAGTATACCG+TGG 0.746869 3_2:+58204104 Msa0413740:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGCTTAATAATTTTTTT+TGG + chr3_2:58200881-58200900 Msa0413740:intron 10.0%
!!! ATAATTACTATTACCTTTTT+TGG - chr3_2:58200990-58201009 None:intergenic 15.0%
!!! TTTTCAGTTATAAATTTAGA+TGG + chr3_2:58201456-58201475 Msa0413740:intron 15.0%
!! CATACACAAATTTATATATA+AGG - chr3_2:58202443-58202462 None:intergenic 15.0%
!!! CTATTTTATCAAATTATTAC+CGG - chr3_2:58202839-58202858 None:intergenic 15.0%
!!! TCTAAAATTTATTTTTTCCA+TGG + chr3_2:58204146-58204165 Msa0413740:three_prime_UTR 15.0%
!! TTAAATTGTTTATCCAAACA+AGG + chr3_2:58201378-58201397 Msa0413740:intron 20.0%
!!! TTATAATTTTGTACAAGATG+AGG + chr3_2:58201610-58201629 Msa0413740:CDS 20.0%
!!! AAGTTTATCCTCTTTTATTT+AGG + chr3_2:58201922-58201941 Msa0413740:intron 20.0%
!!! TTTTATTTAGGTTGCTAATT+TGG + chr3_2:58201934-58201953 Msa0413740:intron 20.0%
!! GTAATATCTCATGTTATAAA+AGG + chr3_2:58202130-58202149 Msa0413740:intron 20.0%
!! GAAAATAATAACAAAGAAAC+TGG - chr3_2:58203000-58203019 None:intergenic 20.0%
!!! TATTTTATGATTGTCAGTTT+TGG + chr3_2:58203596-58203615 Msa0413740:intron 20.0%
!!! TTACTTTTTCTATTGTTAAC+AGG + chr3_2:58203957-58203976 Msa0413740:intron 20.0%
! CTATTGATGAAAATGCTAAA+AGG + chr3_2:58200773-58200792 Msa0413740:CDS 25.0%
!! TTTTGGTCTATGTTAAAAAC+TGG + chr3_2:58200898-58200917 Msa0413740:intron 25.0%
! TTTGGTCTATGTTAAAAACT+GGG + chr3_2:58200899-58200918 Msa0413740:intron 25.0%
! CTTACTCACTAATTCATTAT+TGG + chr3_2:58201174-58201193 Msa0413740:intron 25.0%
! ATATAAAAACTTACACCTTC+TGG - chr3_2:58201316-58201335 None:intergenic 25.0%
! TTCAAAAGAATGAATGTAAC+TGG - chr3_2:58201701-58201720 None:intergenic 25.0%
! ATTAGCAACCTAAATAAAAG+AGG - chr3_2:58201933-58201952 None:intergenic 25.0%
! AACATGAGATATTACCATTA+CGG - chr3_2:58202125-58202144 None:intergenic 25.0%
! GATGAGGAAAAAAACATATA+GGG - chr3_2:58202167-58202186 None:intergenic 25.0%
! CACAAATTTATATATAAGGC+AGG - chr3_2:58202439-58202458 None:intergenic 25.0%
! AAATAGTCAATGATGAGAAA+AGG + chr3_2:58202465-58202484 Msa0413740:intron 25.0%
! AATAGTCAATGATGAGAAAA+GGG + chr3_2:58202466-58202485 Msa0413740:intron 25.0%
!! ATTAGTTGTGGTGATTTTAA+TGG - chr3_2:58202688-58202707 None:intergenic 25.0%
!! CTTAAGAAAATGATTAGTTG+TGG - chr3_2:58202700-58202719 None:intergenic 25.0%
!! TTTTATCAAATTATTACCGG+TGG - chr3_2:58202836-58202855 None:intergenic 25.0%
!! TCGATTTTGCATAGAATTTT+TGG + chr3_2:58202933-58202952 Msa0413740:intron 25.0%
!! CGATTTTGCATAGAATTTTT+GGG + chr3_2:58202934-58202953 Msa0413740:intron 25.0%
! CTAATGTACAACAATAACTA+TGG - chr3_2:58203022-58203041 None:intergenic 25.0%
! AACAGAAATACAAGAGTTTA+GGG - chr3_2:58203049-58203068 None:intergenic 25.0%
! TAACAGAAATACAAGAGTTT+AGG - chr3_2:58203050-58203069 None:intergenic 25.0%
! AATAGCTTAGTTTCTTGATT+TGG + chr3_2:58203071-58203090 Msa0413740:intron 25.0%
! ATAGCTTAGTTTCTTGATTT+GGG + chr3_2:58203072-58203091 Msa0413740:intron 25.0%
! CAATATGATAACACATAACT+TGG - chr3_2:58203104-58203123 None:intergenic 25.0%
! AACAGAAATACATTTGTATC+AGG - chr3_2:58203182-58203201 None:intergenic 25.0%
!! ACAAACTTATTTCTTTACCT+TGG - chr3_2:58203525-58203544 None:intergenic 25.0%
! TTGGAAAATGACTTCTTAAT+AGG + chr3_2:58203615-58203634 Msa0413740:intron 25.0%
! TGGAAAATGACTTCTTAATA+GGG + chr3_2:58203616-58203635 Msa0413740:intron 25.0%
!!! ATTAGTTTGCGTAAAATAGA+TGG + chr3_2:58203758-58203777 Msa0413740:intron 25.0%
! GATGATATTACTGTAATTGT+TGG + chr3_2:58203990-58204009 Msa0413740:CDS 25.0%
! ATTATGCTGTAAAGAAAACA+AGG + chr3_2:58204054-58204073 Msa0413740:three_prime_UTR 25.0%
! GAGATGTTGTACATAATATT+TGG + chr3_2:58204262-58204281 Msa0413740:three_prime_UTR 25.0%
TTCAATATTGAGAGCTGTAA+TGG + chr3_2:58200702-58200721 Msa0413740:CDS 30.0%
GAAGATATGTTATGAATGTG+TGG - chr3_2:58200754-58200773 None:intergenic 30.0%
TTGATGAAAATGCTAAAAGG+AGG + chr3_2:58200776-58200795 Msa0413740:CDS 30.0%
AGTTAACACACCTAATTACA+GGG - chr3_2:58200840-58200859 None:intergenic 30.0%
! CTATGTTAAAAACTGGGTTT+TGG + chr3_2:58200905-58200924 Msa0413740:intron 30.0%
!!! GGGTTTTGGTTTTGTTTTAT+AGG + chr3_2:58200919-58200938 Msa0413740:intron 30.0%
!!! TTTGTTTTATAGGTCATCAG+AGG + chr3_2:58200929-58200948 Msa0413740:intron 30.0%
!!! ACTATTACCTTTTTTGGATG+TGG - chr3_2:58200984-58201003 None:intergenic 30.0%
TTCTTTGTGAGCAACTATAA+TGG + chr3_2:58201110-58201129 Msa0413740:CDS 30.0%
CAACGAATAAATGATGTATC+TGG - chr3_2:58201259-58201278 None:intergenic 30.0%
! AATGATAGTAATGCCTTGTT+TGG - chr3_2:58201394-58201413 None:intergenic 30.0%
!! ACAAAGCAAGATTTTAGTCA+GGG - chr3_2:58201436-58201455 None:intergenic 30.0%
!! AACAAAGCAAGATTTTAGTC+AGG - chr3_2:58201437-58201456 None:intergenic 30.0%
! TAATTTTGTACAAGATGAGG+AGG + chr3_2:58201613-58201632 Msa0413740:CDS 30.0%
ATAATCAGTATCTGCGTTTA+GGG - chr3_2:58201646-58201665 None:intergenic 30.0%
GAGCTGTAATTCAATAAGAA+TGG + chr3_2:58201757-58201776 Msa0413740:intron 30.0%
!! CATGTTGATTCGTTGAATAT+TGG + chr3_2:58201814-58201833 Msa0413740:intron 30.0%
!! TGAATATTGGTTGATTTTGC+AGG + chr3_2:58201827-58201846 Msa0413740:intron 30.0%
ATGATCCTCAGATTCTTATA+AGG + chr3_2:58201856-58201875 Msa0413740:CDS 30.0%
AAATTGTTGAGGCTATATTG+TGG - chr3_2:58202009-58202028 None:intergenic 30.0%
AATCTAAAGATTGCCAATGT+TGG + chr3_2:58202078-58202097 Msa0413740:CDS 30.0%
CGATGAGGAAAAAAACATAT+AGG - chr3_2:58202168-58202187 None:intergenic 30.0%
TGTTGAGAACTTGAATTTCT+CGG + chr3_2:58202201-58202220 Msa0413740:intron 30.0%
AAAAGATTACTTGACCTGAA+AGG - chr3_2:58202233-58202252 None:intergenic 30.0%
TAAATGTTACCATTGCATCA+AGG - chr3_2:58202326-58202345 None:intergenic 30.0%
AAGTGACACTTATTATGAGA+CGG - chr3_2:58202606-58202625 None:intergenic 30.0%
! TTAACCCAAAGCCAATATTT+TGG - chr3_2:58202972-58202991 None:intergenic 30.0%
!! AAAATATTGGCTTTGGGTTA+AGG + chr3_2:58202971-58202990 Msa0413740:intron 30.0%
!! AAATATTGGCTTTGGGTTAA+GGG + chr3_2:58202972-58202991 Msa0413740:intron 30.0%
ACAGAAATACAAGAGTTTAG+GGG - chr3_2:58203048-58203067 None:intergenic 30.0%
AAATGAGATTATATCCCCTT+GGG - chr3_2:58203155-58203174 None:intergenic 30.0%
AGAAAAACAGGTAAGTAATG+TGG + chr3_2:58203226-58203245 Msa0413740:intron 30.0%
! AGAAACATCTTTGTTTGCAA+CGG - chr3_2:58203330-58203349 None:intergenic 30.0%
AAACAGATCAACAAAGAAGA+AGG - chr3_2:58203367-58203386 None:intergenic 30.0%
!! TTTTGATTCTCCGTATTCAT+TGG + chr3_2:58203490-58203509 Msa0413740:CDS 30.0%
!!! CGACTCTTTTAAAACTTAGA+AGG - chr3_2:58203648-58203667 None:intergenic 30.0%
! TGCATTGTCAACAATTTTAC+AGG + chr3_2:58203830-58203849 Msa0413740:intron 30.0%
! GCATTGTCAACAATTTTACA+GGG + chr3_2:58203831-58203850 Msa0413740:intron 30.0%
! CTTTTTCTATTGTTAACAGG+TGG + chr3_2:58203960-58203979 Msa0413740:intron 30.0%
TATTACTGTAATTGTTGGTC+AGG + chr3_2:58203995-58204014 Msa0413740:CDS 30.0%
! TACATAATATTTGGAACCAG+TGG + chr3_2:58204271-58204290 Msa0413740:three_prime_UTR 30.0%
TGTGTGAATGTGAAGAATAG+AGG + chr3_2:58200647-58200666 Msa0413740:five_prime_UTR 35.0%
GTGTGAATGTGAAGAATAGA+GGG + chr3_2:58200648-58200667 Msa0413740:five_prime_UTR 35.0%
GAGTTGAAGTTAAAGTGGTA+AGG + chr3_2:58200670-58200689 Msa0413740:five_prime_UTR 35.0%
GAAGTTAAAGTGGTAAGGAA+TGG + chr3_2:58200675-58200694 Msa0413740:exon 35.0%
CAGAACTTAACCCTGTAATT+AGG + chr3_2:58200827-58200846 Msa0413740:CDS 35.0%
GAGTTAACACACCTAATTAC+AGG - chr3_2:58200841-58200860 None:intergenic 35.0%
! TCAGAGGTTTCATTTTCTGT+TGG + chr3_2:58200945-58200964 Msa0413740:CDS 35.0%
! CAGAGGTTTCATTTTCTGTT+GGG + chr3_2:58200946-58200965 Msa0413740:CDS 35.0%
!!! CCTTTTTTGGATGTGGAATA+AGG - chr3_2:58200977-58200996 None:intergenic 35.0%
CCTTATTCCACATCCAAAAA+AGG + chr3_2:58200974-58200993 Msa0413740:CDS 35.0%
TTGTTAGAGACTTAGAGTTG+TGG + chr3_2:58201051-58201070 Msa0413740:intron 35.0%
TGTTTCTTGAAGGTTGAGAA+AGG + chr3_2:58201074-58201093 Msa0413740:intron 35.0%
TTTGTGAGCAACTATAATGG+TGG + chr3_2:58201113-58201132 Msa0413740:CDS 35.0%
TGCTTATAATAGTGACCAGA+AGG + chr3_2:58201298-58201317 Msa0413740:intron 35.0%
TTTGTGTTATGCTTCACAGT+TGG + chr3_2:58201534-58201553 Msa0413740:intron 35.0%
TTGTGTTATGCTTCACAGTT+GGG + chr3_2:58201535-58201554 Msa0413740:intron 35.0%
AATTCACGTGGGAATAATGA+AGG - chr3_2:58201578-58201597 None:intergenic 35.0%
ATTATTCCCACGTGAATTGA+TGG + chr3_2:58201580-58201599 Msa0413740:CDS 35.0%
CATAATCAGTATCTGCGTTT+AGG - chr3_2:58201647-58201666 None:intergenic 35.0%
ATGGTTATATGCATGTTGTC+TGG + chr3_2:58201776-58201795 Msa0413740:intron 35.0%
GCTTTCCTTATAAGAATCTG+AGG - chr3_2:58201864-58201883 None:intergenic 35.0%
TCACAGACAAGAAATTGTTG+AGG - chr3_2:58202020-58202039 None:intergenic 35.0%
ATTGCTATGCTGGAAAAGAA+TGG + chr3_2:58202054-58202073 Msa0413740:CDS 35.0%
TTGCTATGCTGGAAAAGAAT+GGG + chr3_2:58202055-58202074 Msa0413740:CDS 35.0%
TAATCCACAATCACCAACAT+TGG - chr3_2:58202094-58202113 None:intergenic 35.0%
!! CATTCAAAGTGTTTTCGATG+AGG - chr3_2:58202183-58202202 None:intergenic 35.0%
CAGTCAAAGTAATGTTCTTG+TGG - chr3_2:58202264-58202283 None:intergenic 35.0%
ACAAATAGAGGAGTAGGAAA+AGG - chr3_2:58202385-58202404 None:intergenic 35.0%
AGTGAAGTGAAGACAAATAG+AGG - chr3_2:58202397-58202416 None:intergenic 35.0%
CAATCTGTGCAAGAAAGTTT+AGG - chr3_2:58202515-58202534 None:intergenic 35.0%
!!! TACCTGTGTCATTTTCATGT+CGG + chr3_2:58202876-58202895 Msa0413740:intron 35.0%
TTTCAGATTGAAGTTGTGTC+TGG - chr3_2:58202911-58202930 None:intergenic 35.0%
!! AATATTGGCTTTGGGTTAAG+GGG + chr3_2:58202973-58202992 Msa0413740:intron 35.0%
CAGAAATACAAGAGTTTAGG+GGG - chr3_2:58203047-58203066 None:intergenic 35.0%
!! TAGTTTCTTGATTTGGGTGA+AGG + chr3_2:58203078-58203097 Msa0413740:intron 35.0%
GAAATGAGATTATATCCCCT+TGG - chr3_2:58203156-58203175 None:intergenic 35.0%
ACTAACCTTGACAGAAAAAC+AGG + chr3_2:58203214-58203233 Msa0413740:intron 35.0%
!! ACTTACCTGTTTTTCTGTCA+AGG - chr3_2:58203222-58203241 None:intergenic 35.0%
!!! TCTGATGGGCTTTTTGATAA+TGG + chr3_2:58203281-58203300 Msa0413740:CDS 35.0%
! TGCAAACAAAGATGTTTCTG+AGG + chr3_2:58203331-58203350 Msa0413740:CDS 35.0%
CTTCTTTGTTGATCTGTTTG+AGG + chr3_2:58203368-58203387 Msa0413740:intron 35.0%
! GTTCATTTTGTTGCTAGCAA+AGG + chr3_2:58203427-58203446 Msa0413740:intron 35.0%
! GAACGTGTTTCAACTTCTTT+TGG - chr3_2:58203732-58203751 None:intergenic 35.0%
ATTGTTAAGATCACCAGAGA+AGG + chr3_2:58204082-58204101 Msa0413740:three_prime_UTR 35.0%
ATGAAGCTCTACATACTTCA+CGG - chr3_2:58204188-58204207 None:intergenic 35.0%
!! TACATGTTTTTGCTTACCAC+TGG - chr3_2:58204290-58204309 None:intergenic 35.0%
AGAGGGAGTTGAAGTTAAAG+TGG + chr3_2:58200665-58200684 Msa0413740:five_prime_UTR 40.0%
AGAGTTGTGGTGTTTCTTGA+AGG + chr3_2:58201064-58201083 Msa0413740:intron 40.0%
TTCTTGAAGGTTGAGAAAGG+TGG + chr3_2:58201077-58201096 Msa0413740:intron 40.0%
TCTTGAAGGTTGAGAAAGGT+GGG + chr3_2:58201078-58201097 Msa0413740:intron 40.0%
CATTAGCCATCAATTCACGT+GGG - chr3_2:58201589-58201608 None:intergenic 40.0%
!! ATTGCCAATGTTGGTGATTG+TGG + chr3_2:58202087-58202106 Msa0413740:CDS 40.0%
GGATTACGAGTTATCCGTAA+TGG + chr3_2:58202108-58202127 Msa0413740:CDS 40.0%
GTAATGTTCTTGTGGAGAAG+TGG - chr3_2:58202256-58202275 None:intergenic 40.0%
CCATTGCATCAAGGTATGTT+TGG - chr3_2:58202317-58202336 None:intergenic 40.0%
CCAAACATACCTTGATGCAA+TGG + chr3_2:58202314-58202333 Msa0413740:CDS 40.0%
GTGAAGACAAATAGAGGAGT+AGG - chr3_2:58202391-58202410 None:intergenic 40.0%
TCTGTGCAAGAAAGTTTAGG+TGG - chr3_2:58202512-58202531 None:intergenic 40.0%
ACACTTATTATGAGACGGAG+GGG - chr3_2:58202601-58202620 None:intergenic 40.0%
GACACTTATTATGAGACGGA+GGG - chr3_2:58202602-58202621 None:intergenic 40.0%
TGACACTTATTATGAGACGG+AGG - chr3_2:58202603-58202622 None:intergenic 40.0%
CTCAGACAAGTGTAGCATTT+GGG - chr3_2:58202735-58202754 None:intergenic 40.0%
TCTCAGACAAGTGTAGCATT+TGG - chr3_2:58202736-58202755 None:intergenic 40.0%
AATGCTACACTTGTCTGAGA+CGG + chr3_2:58202736-58202755 Msa0413740:intron 40.0%
TTATGTGTCAACGTCGTCTT+TGG - chr3_2:58202810-58202829 None:intergenic 40.0%
!! CCAGCCAAAATATTGGCTTT+GGG + chr3_2:58202965-58202984 Msa0413740:intron 40.0%
ATACACAACACAACTTCCCA+AGG + chr3_2:58203136-58203155 Msa0413740:intron 40.0%
TACACAACACAACTTCCCAA+GGG + chr3_2:58203137-58203156 Msa0413740:intron 40.0%
GGTAAGTAATGTGGAGTTGA+TGG + chr3_2:58203235-58203254 Msa0413740:intron 40.0%
!! AGTAATGTGGAGTTGATGGA+AGG + chr3_2:58203239-58203258 Msa0413740:CDS 40.0%
GAAGGAGACACAATTGTCAT+GGG + chr3_2:58203257-58203276 Msa0413740:CDS 40.0%
ACAATTGTCATGGGATCTGA+TGG + chr3_2:58203266-58203285 Msa0413740:CDS 40.0%
CAATTGTCATGGGATCTGAT+GGG + chr3_2:58203267-58203286 Msa0413740:CDS 40.0%
CAACGGTTAGAGCAATTTCA+TGG - chr3_2:58203313-58203332 None:intergenic 40.0%
!! AACAAAGATGTTTCTGAGGC+TGG + chr3_2:58203335-58203354 Msa0413740:CDS 40.0%
!! AGCAAAGGCATTAGCTAACT+TGG + chr3_2:58203442-58203461 Msa0413740:intron 40.0%
TGATTCTCCGTATTCATTGG+AGG + chr3_2:58203493-58203512 Msa0413740:CDS 40.0%
! CATGGTGGAAGAAAGTTCTT+GGG + chr3_2:58203865-58203884 Msa0413740:CDS 40.0%
CTCTGGTGATCTTAACAATC+AGG - chr3_2:58204081-58204100 None:intergenic 40.0%
TTAGTGCCACGGTATACTTA+AGG - chr3_2:58204113-58204132 None:intergenic 40.0%
TATACCGTGGCACTAAACTT+TGG + chr3_2:58204117-58204136 Msa0413740:three_prime_UTR 40.0%
ATGACCAAAGTTTAGTGCCA+CGG - chr3_2:58204124-58204143 None:intergenic 40.0%
CTTGAAGGTTGAGAAAGGTG+GGG + chr3_2:58201079-58201098 Msa0413740:intron 45.0%
! GGAGTTATTGCTGTTGCTGA+TGG + chr3_2:58201134-58201153 Msa0413740:CDS 45.0%
GCATTAGCCATCAATTCACG+TGG - chr3_2:58201590-58201609 None:intergenic 45.0%
! CAGTATCTGCGTTTAGGGTA+CGG - chr3_2:58201641-58201660 None:intergenic 45.0%
CATGCTGCTACATTCTCTAC+AGG + chr3_2:58201885-58201904 Msa0413740:CDS 45.0%
! GTGAAGCATCATTGCTATGC+TGG + chr3_2:58202044-58202063 Msa0413740:intron 45.0%
!! TTTCTCGGTGTTCTCCTTTC+AGG + chr3_2:58202216-58202235 Msa0413740:intron 45.0%
! TCTCAGAGCTCAGTTGGTAT+GGG - chr3_2:58202287-58202306 None:intergenic 45.0%
!! ATACCAACTGAGCTCTGAGA+GGG + chr3_2:58202287-58202306 Msa0413740:CDS 45.0%
! GTGTAGCATCGGATTATGCT+GGG - chr3_2:58202570-58202589 None:intergenic 45.0%
! TGTGTAGCATCGGATTATGC+TGG - chr3_2:58202571-58202590 None:intergenic 45.0%
!! GGGGTATTGTTGTGTAGCAT+CGG - chr3_2:58202581-58202600 None:intergenic 45.0%
CACTTATTATGAGACGGAGG+GGG - chr3_2:58202600-58202619 None:intergenic 45.0%
CGTTGACACATAAACACCAC+CGG + chr3_2:58202817-58202836 Msa0413740:intron 45.0%
CACCGACATGAAAATGACAC+AGG - chr3_2:58202881-58202900 None:intergenic 45.0%
!!! CTGTGTCATTTTCATGTCGG+TGG + chr3_2:58202879-58202898 Msa0413740:intron 45.0%
!!! TGTCATTTTCATGTCGGTGG+CGG + chr3_2:58202882-58202901 Msa0413740:intron 45.0%
TCACGTGCCAGCCAAAATAT+TGG + chr3_2:58202958-58202977 Msa0413740:intron 45.0%
!! GCCAGCCAAAATATTGGCTT+TGG + chr3_2:58202964-58202983 Msa0413740:intron 45.0%
!!! CCCAAAGCCAATATTTTGGC+TGG - chr3_2:58202968-58202987 None:intergenic 45.0%
ACACAACACAACTTCCCAAG+GGG + chr3_2:58203138-58203157 Msa0413740:intron 45.0%
GGAAGGAGACACAATTGTCA+TGG + chr3_2:58203256-58203275 Msa0413740:CDS 45.0%
!! AGATGTTTCTGAGGCTGGTA+TGG + chr3_2:58203340-58203359 Msa0413740:intron 45.0%
GAGGAATTGCGATCAACTGT+AGG + chr3_2:58203387-58203406 Msa0413740:intron 45.0%
CTTGGCAAACAGTCATGCAA+TGG + chr3_2:58203460-58203479 Msa0413740:CDS 45.0%
TCCGTATTCATTGGAGGCAA+GGG + chr3_2:58203499-58203518 Msa0413740:CDS 45.0%
!!! TACAGGGTTTTGAAGCTCCA+TGG + chr3_2:58203847-58203866 Msa0413740:intron 45.0%
CCAAGAACTTTCTTCCACCA+TGG - chr3_2:58203867-58203886 None:intergenic 45.0%
! CCATGGTGGAAGAAAGTTCT+TGG + chr3_2:58203864-58203883 Msa0413740:CDS 45.0%
GTTCTTGGGATGAAGTTGAC+AGG + chr3_2:58203879-58203898 Msa0413740:CDS 45.0%
TGGGATGAAGTTGACAGGTA+TGG + chr3_2:58203884-58203903 Msa0413740:intron 45.0%
ACTTAAGGCAACTCCTTCTC+TGG - chr3_2:58204098-58204117 None:intergenic 45.0%
GAGTTGCCTTAAGTATACCG+TGG + chr3_2:58204104-58204123 Msa0413740:three_prime_UTR 45.0%
GCAAAGCAAGAGAACTTCCA+TGG - chr3_2:58204166-58204185 None:intergenic 45.0%
! CTGTTGCTGATGGTGTCTCT+GGG + chr3_2:58201144-58201163 Msa0413740:CDS 50.0%
! CTCTCAGAGCTCAGTTGGTA+TGG - chr3_2:58202288-58202307 None:intergenic 50.0%
!! CATACCAACTGAGCTCTGAG+AGG + chr3_2:58202286-58202305 Msa0413740:CDS 50.0%
! CTACACTTGTCTGAGACGGA+AGG + chr3_2:58202740-58202759 Msa0413740:intron 50.0%
CTCCGTATTCATTGGAGGCA+AGG + chr3_2:58203498-58203517 Msa0413740:CDS 50.0%
GCCCTTGCCTCCAATGAATA+CGG - chr3_2:58203503-58203522 None:intergenic 50.0%
!!! AGGGTTTTGAAGCTCCATGG+TGG + chr3_2:58203850-58203869 Msa0413740:intron 50.0%
! GCTGTTGCTGATGGTGTCTC+TGG + chr3_2:58201143-58201162 Msa0413740:CDS 55.0%
GCTTCACAGTTGGGCTGAAG+AGG + chr3_2:58201544-58201563 Msa0413740:intron 55.0%
CAACCCTCTCAGAGCTCAGT+TGG - chr3_2:58202293-58202312 None:intergenic 55.0%
!! CAACTGAGCTCTGAGAGGGT+TGG + chr3_2:58202291-58202310 Msa0413740:CDS 55.0%
TTCATTGGAGGCAAGGGCCA+AGG + chr3_2:58203505-58203524 Msa0413740:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 58200629 58204386 58200629 ID=Msa0413740;Name=Msa0413740
chr3_2 mRNA 58200629 58204386 58200629 ID=Msa0413740-mRNA-1;Parent=Msa0413740;Name=Msa0413740-mRNA-1;_AED=0.21;_eAED=0.21;_QI=65|1|1|1|1|1|11|355|308
chr3_2 exon 58200629 58200848 58200629 ID=Msa0413740-mRNA-1:exon:12087;Parent=Msa0413740-mRNA-1
chr3_2 exon 58200941 58200995 58200941 ID=Msa0413740-mRNA-1:exon:12088;Parent=Msa0413740-mRNA-1
chr3_2 exon 58201086 58201165 58201086 ID=Msa0413740-mRNA-1:exon:12089;Parent=Msa0413740-mRNA-1
chr3_2 exon 58201553 58201634 58201553 ID=Msa0413740-mRNA-1:exon:12090;Parent=Msa0413740-mRNA-1
chr3_2 exon 58201849 58201919 58201849 ID=Msa0413740-mRNA-1:exon:12091;Parent=Msa0413740-mRNA-1
chr3_2 exon 58202050 58202129 58202050 ID=Msa0413740-mRNA-1:exon:12092;Parent=Msa0413740-mRNA-1
chr3_2 exon 58202238 58202335 58202238 ID=Msa0413740-mRNA-1:exon:12093;Parent=Msa0413740-mRNA-1
chr3_2 exon 58203236 58203356 58203236 ID=Msa0413740-mRNA-1:exon:12094;Parent=Msa0413740-mRNA-1
chr3_2 exon 58203444 58203526 58203444 ID=Msa0413740-mRNA-1:exon:12095;Parent=Msa0413740-mRNA-1
chr3_2 exon 58203852 58203900 58203852 ID=Msa0413740-mRNA-1:exon:12096;Parent=Msa0413740-mRNA-1
chr3_2 exon 58203979 58204386 58203979 ID=Msa0413740-mRNA-1:exon:12097;Parent=Msa0413740-mRNA-1
chr3_2 five_prime_UTR 58200629 58200693 58200629 ID=Msa0413740-mRNA-1:five_prime_utr;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58200694 58200848 58200694 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58200941 58200995 58200941 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58201086 58201165 58201086 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58201553 58201634 58201553 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58201849 58201919 58201849 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58202050 58202129 58202050 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58202238 58202335 58202238 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58203236 58203356 58203236 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58203444 58203526 58203444 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58203852 58203900 58203852 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 CDS 58203979 58204031 58203979 ID=Msa0413740-mRNA-1:cds;Parent=Msa0413740-mRNA-1
chr3_2 three_prime_UTR 58204032 58204386 58204032 ID=Msa0413740-mRNA-1:three_prime_utr;Parent=Msa0413740-mRNA-1
Gene Sequence

>Msa0413740

ATGGCTATTTCAATATTGAGAGCTGTAATGGTGTCTAATTCTCATTGTCAATCTCAACCACACATTCATAACATATCTTCTATTGATGAAAATGCTAAAAGGAGGAAAAGAGTAGTTTTCTCTTCTCATTCTTCAGAACTTAACCCTGTAATTAGGTCATCAGAGGTTTCATTTTCTGTTGGGACTTGCCTTATTCCACATCCAAAAAAGGTTGAGAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAACTATAATGGTGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAAGAGGATGTAGATCCTTCATTATTCCCACGTGAATTGATGGCTAATGCTTATAATTTTGTACAAGATGAGGAGGTGAATAATGATCCTCAGATTCTTATAAGGAAAGCACATGCTGCTACATTCTCTACAGGCTCAGCAACTGTCATCATTGCTATGCTGGAAAAGAATGGGAATCTAAAGATTGCCAATGTTGGTGATTGTGGATTACGAGTTATCCGTAATGGTCAAGTAATCTTTTCCACTTCTCCACAAGAACATTACTTTGACTGCCCATACCAACTGAGCTCTGAGAGGGTTGGCCAAACATACCTTGATGCAATGGTAAGTAATGTGGAGTTGATGGAAGGAGACACAATTGTCATGGGATCTGATGGGCTTTTTGATAATGGTTTTGACCATGAAATTGCTCTAACCGTTGCAAACAAAGATGTTTCTGAGGCTGCAAAGGCATTAGCTAACTTGGCAAACAGTCATGCAATGGATTCAAATTTTGATTCTCCGTATTCATTGGAGGCAAGGGCCAAGGGTTTTGAAGCTCCATGGTGGAAGAAAGTTCTTGGGATGAAGTTGACAGGTGGAAAGCTTGATGATATTACTGTAATTGTTGGTCAGGTTATAAATTCATGA

Protein sequence

>Msa0413740

MAISILRAVMVSNSHCQSQPHIHNISSIDENAKRRKRVVFSSHSSELNPVIRSSEVSFSVGTCLIPHPKKVEKGGEDAFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMANAYNFVQDEEVNNDPQILIRKAHAATFSTGSATVIIAMLEKNGNLKIANVGDCGLRVIRNGQVIFSTSPQEHYFDCPYQLSSERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNGFDHEIALTVANKDVSEAAKALANLANSHAMDSNFDSPYSLEARAKGFEAPWWKKVLGMKLTGGKLDDITVIVGQVINS*