AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0505390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505390 MtrunA17_Chr3g0106291 96.764 309 9 1 1 308 1 309 0.0 617
Msa0505390 MtrunA17_Chr1g0154711 35.789 285 163 6 30 308 235 505 1.09e-44 159
Msa0505390 MtrunA17_Chr5g0403781 38.672 256 135 7 61 308 206 447 5.17e-44 155
Msa0505390 MtrunA17_Chr2g0278991 32.836 268 146 9 51 305 1041 1287 2.78e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505390 AT2G30170.1 63.668 289 100 3 23 308 12 298 4.70e-130 372
Msa0505390 AT2G30170.3 67.421 221 71 1 89 308 1 221 1.88e-109 317
Msa0505390 AT2G30170.5 62.882 229 80 3 23 248 12 238 1.97e-95 283
Msa0505390 AT2G30170.6 69.231 195 59 1 55 248 9 203 1.42e-94 280
Msa0505390 AT2G30170.4 63.684 190 65 2 23 210 12 199 1.27e-79 241
Msa0505390 AT2G30170.2 66.456 158 52 1 152 308 1 158 7.67e-76 229
Msa0505390 AT2G30170.7 67.702 161 51 1 89 248 1 161 1.27e-74 227
Msa0505390 AT4G16580.1 40.945 254 131 5 61 308 221 461 5.99e-51 175
Msa0505390 AT5G66720.2 33.013 312 176 6 4 308 126 411 2.74e-48 166
Msa0505390 AT5G66720.1 33.758 314 174 7 4 308 126 414 1.28e-47 165
Msa0505390 AT4G33500.1 34.000 250 142 9 61 303 484 717 4.16e-31 123

Find 84 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATGTTGTACATAATATT+TGG 0.167472 3_4:+50837695 Msa0505390:three_prime_UTR
CAGAACTTAACCCTGTAATT+AGG 0.272580 3_4:+50834260 Msa0505390:CDS
GCTGTTGCTGATGGTGTCTC+TGG 0.289126 3_4:+50834576 Msa0505390:CDS
ATTATTCCCACGTGAATTGA+TGG 0.323223 3_4:+50835013 Msa0505390:CDS
CCATGGTGGAAGAAAGTTCT+TGG 0.345245 3_4:+50837297 Msa0505390:CDS
GAGTTAACACACCTAATTAC+AGG 0.352628 3_4:-50834271 None:intergenic
TTCTTTGTGAGCAACTATAA+TGG 0.354294 3_4:+50834543 Msa0505390:CDS
ATGATCCTCAGATTCTTATA+AGG 0.360349 3_4:+50835289 Msa0505390:CDS
CCATTGCATCAAGGTATGTT+TGG 0.361695 3_4:-50835747 None:intergenic
CTATTGATGAAAATGCTAAA+AGG 0.368498 3_4:+50834206 Msa0505390:CDS
TTCAATATTGAGAGCTGTAA+TGG 0.381901 3_4:+50834135 Msa0505390:CDS
TATTACTGTAATTGTTGGTC+AGG 0.384653 3_4:+50837428 Msa0505390:CDS
CTCTCAGAGCTCAGTTGGTA+TGG 0.396619 3_4:-50835718 None:intergenic
GGTAAGTAATGTGGAGTTGA+TGG 0.402055 3_4:+50836668 Msa0505390:intron
AACATGAGATATTACCATTA+CGG 0.404411 3_4:-50835555 None:intergenic
CAACGGTTAGAGCAATTTCA+TGG 0.406391 3_4:-50836743 None:intergenic
GATGATATTACTGTAATTGT+TGG 0.415329 3_4:+50837423 Msa0505390:CDS
AGCAAAGGCATTAGCTAACT+TGG 0.423045 3_4:+50836875 Msa0505390:intron
CTCTGGTGATCTTAACAATC+AGG 0.429033 3_4:-50837511 None:intergenic
TCTTGAAGGTTGAGAAAGGT+GGG 0.444907 3_4:+50834511 Msa0505390:intron
AACAAAGATGTTTCTGAGGC+TGG 0.460161 3_4:+50836768 Msa0505390:CDS
ATTGCCAATGTTGGTGATTG+TGG 0.466988 3_4:+50835520 Msa0505390:CDS
ACTTAAGGCAACTCCTTCTC+TGG 0.471321 3_4:-50837528 None:intergenic
GCCCTTGCCTCCAATGAATA+CGG 0.481855 3_4:-50836933 None:intergenic
GTGAAGCATCATTGCTATGC+TGG 0.481916 3_4:+50835477 Msa0505390:intron
TTGCTATGCTGGAAAAGAAT+GGG 0.485820 3_4:+50835488 Msa0505390:CDS
CATGGTGGAAGAAAGTTCTT+GGG 0.496365 3_4:+50837298 Msa0505390:CDS
ACAATTGTCATGGGATCTGA+TGG 0.498716 3_4:+50836699 Msa0505390:CDS
AGAGGGAGTTGAAGTTAAAG+TGG 0.503608 3_4:+50834098 Msa0505390:five_prime_UTR
TTAGTGCCACGGTATACTTA+AGG 0.503627 3_4:-50837543 None:intergenic
TTCTTGAAGGTTGAGAAAGG+TGG 0.504622 3_4:+50834510 Msa0505390:intron
GGAGTTATTGCTGTTGCTGA+TGG 0.506025 3_4:+50834567 Msa0505390:CDS
ATTGCTATGCTGGAAAAGAA+TGG 0.507571 3_4:+50835487 Msa0505390:CDS
GGATTACGAGTTATCCGTAA+TGG 0.510558 3_4:+50835541 Msa0505390:CDS
ATGAAGCTCTACATACTTCA+CGG 0.511085 3_4:-50837618 None:intergenic
CTGTTGCTGATGGTGTCTCT+GGG 0.512852 3_4:+50834577 Msa0505390:CDS
TGATTCTCCGTATTCATTGG+AGG 0.517203 3_4:+50836926 Msa0505390:CDS
AATTCACGTGGGAATAATGA+AGG 0.517953 3_4:-50835008 None:intergenic
CTCCGTATTCATTGGAGGCA+AGG 0.518397 3_4:+50836931 Msa0505390:CDS
GCTTCACAGTTGGGCTGAAG+AGG 0.521493 3_4:+50834977 Msa0505390:intron
TCCGTATTCATTGGAGGCAA+GGG 0.535770 3_4:+50836932 Msa0505390:CDS
TATACCGTGGCACTAAACTT+TGG 0.536254 3_4:+50837550 Msa0505390:three_prime_UTR
TGTTTCTTGAAGGTTGAGAA+AGG 0.536545 3_4:+50834507 Msa0505390:intron
GTAATGTTCTTGTGGAGAAG+TGG 0.542397 3_4:-50835686 None:intergenic
CAACCCTCTCAGAGCTCAGT+TGG 0.543171 3_4:-50835723 None:intergenic
GAGTTGAAGTTAAAGTGGTA+AGG 0.543527 3_4:+50834103 Msa0505390:five_prime_UTR
GAAGTTAAAGTGGTAAGGAA+TGG 0.545965 3_4:+50834108 Msa0505390:exon
GTTCTTGGGATGAAGTTGAC+AGG 0.546334 3_4:+50837312 Msa0505390:CDS
GGAAGGAGACACAATTGTCA+TGG 0.550201 3_4:+50836689 Msa0505390:CDS
TAAAGGCATTCAGCTTACAT+TGG 0.551771 3_4:-50837799 None:intergenic
AGAAACATCTTTGTTTGCAA+CGG 0.553090 3_4:-50836760 None:intergenic
CATGCTGCTACATTCTCTAC+AGG 0.556023 3_4:+50835318 Msa0505390:CDS
GTGTGAATGTGAAGAATAGA+GGG 0.560295 3_4:+50834081 Msa0505390:five_prime_UTR
CAGTCAAAGTAATGTTCTTG+TGG 0.563107 3_4:-50835694 None:intergenic
TCTCAGAGCTCAGTTGGTAT+GGG 0.569458 3_4:-50835717 None:intergenic
CTTGAAGGTTGAGAAAGGTG+GGG 0.569673 3_4:+50834512 Msa0505390:intron
GCAAAGCAAGAGAACTTCCA+TGG 0.570066 3_4:-50837596 None:intergenic
TGTGTGAATGTGAAGAATAG+AGG 0.570195 3_4:+50834080 Msa0505390:five_prime_UTR
TAAATGTTACCATTGCATCA+AGG 0.570236 3_4:-50835756 None:intergenic
AATCTAAAGATTGCCAATGT+TGG 0.572338 3_4:+50835511 Msa0505390:CDS
TACATAATATTTGGAACCAG+TGG 0.574189 3_4:+50837704 Msa0505390:three_prime_UTR
TTTGTGAGCAACTATAATGG+TGG 0.577961 3_4:+50834546 Msa0505390:CDS
AGTAATGTGGAGTTGATGGA+AGG 0.579559 3_4:+50836672 Msa0505390:CDS
CCAAACATACCTTGATGCAA+TGG 0.590788 3_4:+50835747 Msa0505390:CDS
TTCATTGGAGGCAAGGGCCA+AGG 0.591316 3_4:+50836938 Msa0505390:CDS
CTTGGCAAACAGTCATGCAA+TGG 0.591819 3_4:+50836893 Msa0505390:CDS
CCAAGAACTTTCTTCCACCA+TGG 0.595236 3_4:-50837297 None:intergenic
GAAGGAGACACAATTGTCAT+GGG 0.599986 3_4:+50836690 Msa0505390:CDS
ATTGTTAAGATCACCAGAGA+AGG 0.600071 3_4:+50837515 Msa0505390:three_prime_UTR
TAATCCACAATCACCAACAT+TGG 0.602187 3_4:-50835524 None:intergenic
CAACTGAGCTCTGAGAGGGT+TGG 0.619782 3_4:+50835724 Msa0505390:CDS
TGCAAACAAAGATGTTTCTG+AGG 0.619881 3_4:+50836764 Msa0505390:CDS
AGTTAACACACCTAATTACA+GGG 0.621910 3_4:-50834270 None:intergenic
ATACCAACTGAGCTCTGAGA+GGG 0.631786 3_4:+50835720 Msa0505390:CDS
TTGATGAAAATGCTAAAAGG+AGG 0.632849 3_4:+50834209 Msa0505390:CDS
GCTTTCCTTATAAGAATCTG+AGG 0.633109 3_4:-50835294 None:intergenic
ATGACCAAAGTTTAGTGCCA+CGG 0.636017 3_4:-50837554 None:intergenic
CAATTGTCATGGGATCTGAT+GGG 0.648322 3_4:+50836700 Msa0505390:CDS
GCATTAGCCATCAATTCACG+TGG 0.652412 3_4:-50835020 None:intergenic
ATTATGCTGTAAAGAAAACA+AGG 0.653479 3_4:+50837487 Msa0505390:three_prime_UTR
CATACCAACTGAGCTCTGAG+AGG 0.655681 3_4:+50835719 Msa0505390:CDS
GAAGATATGTTATGAATGTG+TGG 0.660697 3_4:-50834184 None:intergenic
CATTAGCCATCAATTCACGT+GGG 0.738708 3_4:-50835019 None:intergenic
GAGTTGCCTTAAGTATACCG+TGG 0.746869 3_4:+50837537 Msa0505390:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGCTTAATAATTTTTTT+TGG + chr3_4:50834314-50834333 Msa0505390:intron 10.0%
!!! ATAATTACTATTACCTTTTT+TGG - chr3_4:50834423-50834442 None:intergenic 15.0%
!!! TTTTCAGTTATAAATTTAGA+TGG + chr3_4:50834889-50834908 Msa0505390:intron 15.0%
!! CATACACAAATTTATATATA+AGG - chr3_4:50835875-50835894 None:intergenic 15.0%
!!! CTATTTTATCAAATTATTAC+CGG - chr3_4:50836271-50836290 None:intergenic 15.0%
!!! TCTAAAATTTATTTTTTCCA+TGG + chr3_4:50837579-50837598 Msa0505390:three_prime_UTR 15.0%
!! TTAAATTGTTTATCCAAACA+AGG + chr3_4:50834811-50834830 Msa0505390:intron 20.0%
!!! TTATAATTTTGTACAAGATG+AGG + chr3_4:50835043-50835062 Msa0505390:CDS 20.0%
!!! AAGTTTATCCTCTTTTATTT+AGG + chr3_4:50835355-50835374 Msa0505390:intron 20.0%
!!! TTTTATTTAGGTTGCTAATT+TGG + chr3_4:50835367-50835386 Msa0505390:intron 20.0%
!! GTAATATCTCATGTTATAAA+AGG + chr3_4:50835563-50835582 Msa0505390:intron 20.0%
!! GAAAATAATAACAAAGAAAC+TGG - chr3_4:50836432-50836451 None:intergenic 20.0%
!!! TATTTTATGATTGTCAGTTT+TGG + chr3_4:50837029-50837048 Msa0505390:intron 20.0%
!!! TTACTTTTTCTATTGTTAAC+AGG + chr3_4:50837390-50837409 Msa0505390:intron 20.0%
! CTATTGATGAAAATGCTAAA+AGG + chr3_4:50834206-50834225 Msa0505390:CDS 25.0%
!! TTTTGGTCTATGTTAAAAAC+TGG + chr3_4:50834331-50834350 Msa0505390:intron 25.0%
! TTTGGTCTATGTTAAAAACT+GGG + chr3_4:50834332-50834351 Msa0505390:intron 25.0%
! CTTACTCACTAATTCATTAT+TGG + chr3_4:50834607-50834626 Msa0505390:intron 25.0%
! ATATAAAAACTTACACCTTC+TGG - chr3_4:50834749-50834768 None:intergenic 25.0%
! TTCAAAAGAATGAATGTAAC+TGG - chr3_4:50835134-50835153 None:intergenic 25.0%
! ATTAGCAACCTAAATAAAAG+AGG - chr3_4:50835366-50835385 None:intergenic 25.0%
! AACATGAGATATTACCATTA+CGG - chr3_4:50835558-50835577 None:intergenic 25.0%
! GATGAGGAAAAAAACATATA+GGG - chr3_4:50835600-50835619 None:intergenic 25.0%
! CACAAATTTATATATAAGGC+AGG - chr3_4:50835871-50835890 None:intergenic 25.0%
! AAATAGTCAATGATGAGAAA+AGG + chr3_4:50835897-50835916 Msa0505390:intron 25.0%
! AATAGTCAATGATGAGAAAA+GGG + chr3_4:50835898-50835917 Msa0505390:intron 25.0%
!! ATTAGTTGTGGTGATTTTAA+TGG - chr3_4:50836120-50836139 None:intergenic 25.0%
!! CTTAAGAAAATGATTAGTTG+TGG - chr3_4:50836132-50836151 None:intergenic 25.0%
!! TTTTATCAAATTATTACCGG+TGG - chr3_4:50836268-50836287 None:intergenic 25.0%
!! TCGATTTTGCATAGAATTTT+TGG + chr3_4:50836365-50836384 Msa0505390:intron 25.0%
!! CGATTTTGCATAGAATTTTT+GGG + chr3_4:50836366-50836385 Msa0505390:intron 25.0%
! CTAATGTACAACAATAACTA+TGG - chr3_4:50836454-50836473 None:intergenic 25.0%
! AACAGAAATACAAGAGTTTA+GGG - chr3_4:50836481-50836500 None:intergenic 25.0%
! TAACAGAAATACAAGAGTTT+AGG - chr3_4:50836482-50836501 None:intergenic 25.0%
! AATAGCTTAGTTTCTTGATT+TGG + chr3_4:50836503-50836522 Msa0505390:intron 25.0%
! ATAGCTTAGTTTCTTGATTT+GGG + chr3_4:50836504-50836523 Msa0505390:intron 25.0%
! CAATATGATAACACATAACT+TGG - chr3_4:50836536-50836555 None:intergenic 25.0%
! AACAGAAATACATTTGTATC+AGG - chr3_4:50836615-50836634 None:intergenic 25.0%
!! ACAAACTTATTTCTTTACCT+TGG - chr3_4:50836958-50836977 None:intergenic 25.0%
! TTGGAAAATGACTTCTTAAT+AGG + chr3_4:50837048-50837067 Msa0505390:intron 25.0%
! TGGAAAATGACTTCTTAATA+GGG + chr3_4:50837049-50837068 Msa0505390:intron 25.0%
!!! ATTAGTTTGCGTAAAATAGA+TGG + chr3_4:50837191-50837210 Msa0505390:intron 25.0%
! GATGATATTACTGTAATTGT+TGG + chr3_4:50837423-50837442 Msa0505390:CDS 25.0%
! ATTATGCTGTAAAGAAAACA+AGG + chr3_4:50837487-50837506 Msa0505390:three_prime_UTR 25.0%
! GAGATGTTGTACATAATATT+TGG + chr3_4:50837695-50837714 Msa0505390:three_prime_UTR 25.0%
TTCAATATTGAGAGCTGTAA+TGG + chr3_4:50834135-50834154 Msa0505390:CDS 30.0%
GAAGATATGTTATGAATGTG+TGG - chr3_4:50834187-50834206 None:intergenic 30.0%
TTGATGAAAATGCTAAAAGG+AGG + chr3_4:50834209-50834228 Msa0505390:CDS 30.0%
AGTTAACACACCTAATTACA+GGG - chr3_4:50834273-50834292 None:intergenic 30.0%
! CTATGTTAAAAACTGGGTTT+TGG + chr3_4:50834338-50834357 Msa0505390:intron 30.0%
!!! GGGTTTTGGTTTTGTTTTAT+AGG + chr3_4:50834352-50834371 Msa0505390:intron 30.0%
!!! TTTGTTTTATAGGTCATCAG+AGG + chr3_4:50834362-50834381 Msa0505390:intron 30.0%
!!! ACTATTACCTTTTTTGGATG+TGG - chr3_4:50834417-50834436 None:intergenic 30.0%
TTCTTTGTGAGCAACTATAA+TGG + chr3_4:50834543-50834562 Msa0505390:CDS 30.0%
CAACGAATAAATGATGTATC+TGG - chr3_4:50834692-50834711 None:intergenic 30.0%
! AATGATAGTAATGCCTTGTT+TGG - chr3_4:50834827-50834846 None:intergenic 30.0%
!! ACAAAGCAAGATTTTAGTCA+GGG - chr3_4:50834869-50834888 None:intergenic 30.0%
!! AACAAAGCAAGATTTTAGTC+AGG - chr3_4:50834870-50834889 None:intergenic 30.0%
! TAATTTTGTACAAGATGAGG+AGG + chr3_4:50835046-50835065 Msa0505390:CDS 30.0%
ATAATCAGTATCTGCGTTTA+GGG - chr3_4:50835079-50835098 None:intergenic 30.0%
GAGCTGTAATTCAATAAGAA+TGG + chr3_4:50835190-50835209 Msa0505390:intron 30.0%
!! CATGTTGATTCGTTGAATAT+TGG + chr3_4:50835247-50835266 Msa0505390:intron 30.0%
!! TGAATATTGGTTGATTTTGC+AGG + chr3_4:50835260-50835279 Msa0505390:intron 30.0%
ATGATCCTCAGATTCTTATA+AGG + chr3_4:50835289-50835308 Msa0505390:CDS 30.0%
AAATTGTTGAGGCTATATTG+TGG - chr3_4:50835442-50835461 None:intergenic 30.0%
AATCTAAAGATTGCCAATGT+TGG + chr3_4:50835511-50835530 Msa0505390:CDS 30.0%
CGATGAGGAAAAAAACATAT+AGG - chr3_4:50835601-50835620 None:intergenic 30.0%
TGTTGAGAACTTGAATTTCT+CGG + chr3_4:50835634-50835653 Msa0505390:intron 30.0%
AAAAGATTACTTGACCTGAA+AGG - chr3_4:50835666-50835685 None:intergenic 30.0%
TAAATGTTACCATTGCATCA+AGG - chr3_4:50835759-50835778 None:intergenic 30.0%
AAGTGACACTTATTATGAGA+CGG - chr3_4:50836038-50836057 None:intergenic 30.0%
! TTAACCCAAAGCCAATATTT+TGG - chr3_4:50836404-50836423 None:intergenic 30.0%
!! AAAATATTGGCTTTGGGTTA+AGG + chr3_4:50836403-50836422 Msa0505390:intron 30.0%
!! AAATATTGGCTTTGGGTTAA+GGG + chr3_4:50836404-50836423 Msa0505390:intron 30.0%
ACAGAAATACAAGAGTTTAG+GGG - chr3_4:50836480-50836499 None:intergenic 30.0%
AATGAGATTATATCCCCTTT+GGG - chr3_4:50836587-50836606 None:intergenic 30.0%
AAATGAGATTATATCCCCTT+TGG - chr3_4:50836588-50836607 None:intergenic 30.0%
AGAAAAACAGGTAAGTAATG+TGG + chr3_4:50836659-50836678 Msa0505390:intron 30.0%
! AGAAACATCTTTGTTTGCAA+CGG - chr3_4:50836763-50836782 None:intergenic 30.0%
AAACAGATCAACAAAGAAGA+AGG - chr3_4:50836800-50836819 None:intergenic 30.0%
!! TTTTGATTCTCCGTATTCAT+TGG + chr3_4:50836923-50836942 Msa0505390:CDS 30.0%
!!! CGACTCTTTTAAAACTTAGA+AGG - chr3_4:50837081-50837100 None:intergenic 30.0%
! TGCATTGTCAACAATTTTAC+AGG + chr3_4:50837263-50837282 Msa0505390:intron 30.0%
! GCATTGTCAACAATTTTACA+GGG + chr3_4:50837264-50837283 Msa0505390:intron 30.0%
! CTTTTTCTATTGTTAACAGG+TGG + chr3_4:50837393-50837412 Msa0505390:intron 30.0%
TATTACTGTAATTGTTGGTC+AGG + chr3_4:50837428-50837447 Msa0505390:CDS 30.0%
! TACATAATATTTGGAACCAG+TGG + chr3_4:50837704-50837723 Msa0505390:three_prime_UTR 30.0%
TGTGTGAATGTGAAGAATAG+AGG + chr3_4:50834080-50834099 Msa0505390:five_prime_UTR 35.0%
GTGTGAATGTGAAGAATAGA+GGG + chr3_4:50834081-50834100 Msa0505390:five_prime_UTR 35.0%
GAGTTGAAGTTAAAGTGGTA+AGG + chr3_4:50834103-50834122 Msa0505390:five_prime_UTR 35.0%
GAAGTTAAAGTGGTAAGGAA+TGG + chr3_4:50834108-50834127 Msa0505390:exon 35.0%
CAGAACTTAACCCTGTAATT+AGG + chr3_4:50834260-50834279 Msa0505390:CDS 35.0%
GAGTTAACACACCTAATTAC+AGG - chr3_4:50834274-50834293 None:intergenic 35.0%
! TCAGAGGTTTCATTTTCTGT+TGG + chr3_4:50834378-50834397 Msa0505390:CDS 35.0%
! CAGAGGTTTCATTTTCTGTT+GGG + chr3_4:50834379-50834398 Msa0505390:CDS 35.0%
!!! CCTTTTTTGGATGTGGAATA+AGG - chr3_4:50834410-50834429 None:intergenic 35.0%
CCTTATTCCACATCCAAAAA+AGG + chr3_4:50834407-50834426 Msa0505390:CDS 35.0%
TTGTTAGAGACTTAGAGTTG+TGG + chr3_4:50834484-50834503 Msa0505390:intron 35.0%
TGTTTCTTGAAGGTTGAGAA+AGG + chr3_4:50834507-50834526 Msa0505390:intron 35.0%
TTTGTGAGCAACTATAATGG+TGG + chr3_4:50834546-50834565 Msa0505390:CDS 35.0%
TGCTTATAATAGTGACCAGA+AGG + chr3_4:50834731-50834750 Msa0505390:intron 35.0%
TTTGTGTTATGCTTCACAGT+TGG + chr3_4:50834967-50834986 Msa0505390:intron 35.0%
TTGTGTTATGCTTCACAGTT+GGG + chr3_4:50834968-50834987 Msa0505390:intron 35.0%
AATTCACGTGGGAATAATGA+AGG - chr3_4:50835011-50835030 None:intergenic 35.0%
ATTATTCCCACGTGAATTGA+TGG + chr3_4:50835013-50835032 Msa0505390:CDS 35.0%
CATAATCAGTATCTGCGTTT+AGG - chr3_4:50835080-50835099 None:intergenic 35.0%
ATGGTTATATGCATGTTGTC+TGG + chr3_4:50835209-50835228 Msa0505390:intron 35.0%
GCTTTCCTTATAAGAATCTG+AGG - chr3_4:50835297-50835316 None:intergenic 35.0%
TCACAGACAAGAAATTGTTG+AGG - chr3_4:50835453-50835472 None:intergenic 35.0%
ATTGCTATGCTGGAAAAGAA+TGG + chr3_4:50835487-50835506 Msa0505390:CDS 35.0%
TTGCTATGCTGGAAAAGAAT+GGG + chr3_4:50835488-50835507 Msa0505390:CDS 35.0%
TAATCCACAATCACCAACAT+TGG - chr3_4:50835527-50835546 None:intergenic 35.0%
!! CATTCAAAGTGTTTTCGATG+AGG - chr3_4:50835616-50835635 None:intergenic 35.0%
CAGTCAAAGTAATGTTCTTG+TGG - chr3_4:50835697-50835716 None:intergenic 35.0%
ACAAATAGAGGAGTAGGAAA+AGG - chr3_4:50835818-50835837 None:intergenic 35.0%
AGTGAAGTGAAGACAAATAG+AGG - chr3_4:50835830-50835849 None:intergenic 35.0%
CAATCTGTGCAAGAAAGTTT+AGG - chr3_4:50835947-50835966 None:intergenic 35.0%
!!! TACCTGTGTCATTTTCATGT+CGG + chr3_4:50836308-50836327 Msa0505390:intron 35.0%
TTTCAGATTGAAGTTGTGTC+TGG - chr3_4:50836343-50836362 None:intergenic 35.0%
!! AATATTGGCTTTGGGTTAAG+GGG + chr3_4:50836405-50836424 Msa0505390:intron 35.0%
CAGAAATACAAGAGTTTAGG+GGG - chr3_4:50836479-50836498 None:intergenic 35.0%
!! TAGTTTCTTGATTTGGGTGA+AGG + chr3_4:50836510-50836529 Msa0505390:intron 35.0%
ACTAACCTTGACAGAAAAAC+AGG + chr3_4:50836647-50836666 Msa0505390:intron 35.0%
!! ACTTACCTGTTTTTCTGTCA+AGG - chr3_4:50836655-50836674 None:intergenic 35.0%
!!! TCTGATGGGCTTTTTGATAA+TGG + chr3_4:50836714-50836733 Msa0505390:CDS 35.0%
! TGCAAACAAAGATGTTTCTG+AGG + chr3_4:50836764-50836783 Msa0505390:CDS 35.0%
CTTCTTTGTTGATCTGTTTG+AGG + chr3_4:50836801-50836820 Msa0505390:intron 35.0%
! GTTCATTTTGTTGCTAGCAA+AGG + chr3_4:50836860-50836879 Msa0505390:intron 35.0%
! GAACGTGTTTCAACTTCTTT+TGG - chr3_4:50837165-50837184 None:intergenic 35.0%
ATTGTTAAGATCACCAGAGA+AGG + chr3_4:50837515-50837534 Msa0505390:three_prime_UTR 35.0%
ATGAAGCTCTACATACTTCA+CGG - chr3_4:50837621-50837640 None:intergenic 35.0%
!! TACATGTTTTTGCTTACCAC+TGG - chr3_4:50837723-50837742 None:intergenic 35.0%
AGAGGGAGTTGAAGTTAAAG+TGG + chr3_4:50834098-50834117 Msa0505390:five_prime_UTR 40.0%
AGAGTTGTGGTGTTTCTTGA+AGG + chr3_4:50834497-50834516 Msa0505390:intron 40.0%
TTCTTGAAGGTTGAGAAAGG+TGG + chr3_4:50834510-50834529 Msa0505390:intron 40.0%
TCTTGAAGGTTGAGAAAGGT+GGG + chr3_4:50834511-50834530 Msa0505390:intron 40.0%
CATTAGCCATCAATTCACGT+GGG - chr3_4:50835022-50835041 None:intergenic 40.0%
!! ATTGCCAATGTTGGTGATTG+TGG + chr3_4:50835520-50835539 Msa0505390:CDS 40.0%
GGATTACGAGTTATCCGTAA+TGG + chr3_4:50835541-50835560 Msa0505390:CDS 40.0%
GTAATGTTCTTGTGGAGAAG+TGG - chr3_4:50835689-50835708 None:intergenic 40.0%
CCATTGCATCAAGGTATGTT+TGG - chr3_4:50835750-50835769 None:intergenic 40.0%
CCAAACATACCTTGATGCAA+TGG + chr3_4:50835747-50835766 Msa0505390:CDS 40.0%
GTGAAGACAAATAGAGGAGT+AGG - chr3_4:50835824-50835843 None:intergenic 40.0%
TCTGTGCAAGAAAGTTTAGG+TGG - chr3_4:50835944-50835963 None:intergenic 40.0%
ACACTTATTATGAGACGGAG+GGG - chr3_4:50836033-50836052 None:intergenic 40.0%
GACACTTATTATGAGACGGA+GGG - chr3_4:50836034-50836053 None:intergenic 40.0%
TGACACTTATTATGAGACGG+AGG - chr3_4:50836035-50836054 None:intergenic 40.0%
CTCAGACAAGTGTAGCATTT+GGG - chr3_4:50836167-50836186 None:intergenic 40.0%
TCTCAGACAAGTGTAGCATT+TGG - chr3_4:50836168-50836187 None:intergenic 40.0%
AATGCTACACTTGTCTGAGA+CGG + chr3_4:50836168-50836187 Msa0505390:intron 40.0%
TTATGTGTCAACGTCGTCTT+TGG - chr3_4:50836242-50836261 None:intergenic 40.0%
!! CCAGCCAAAATATTGGCTTT+GGG + chr3_4:50836397-50836416 Msa0505390:intron 40.0%
TACACAACACAACTTCCCAA+AGG + chr3_4:50836569-50836588 Msa0505390:intron 40.0%
ACACAACACAACTTCCCAAA+GGG + chr3_4:50836570-50836589 Msa0505390:intron 40.0%
GGTAAGTAATGTGGAGTTGA+TGG + chr3_4:50836668-50836687 Msa0505390:intron 40.0%
!! AGTAATGTGGAGTTGATGGA+AGG + chr3_4:50836672-50836691 Msa0505390:CDS 40.0%
GAAGGAGACACAATTGTCAT+GGG + chr3_4:50836690-50836709 Msa0505390:CDS 40.0%
ACAATTGTCATGGGATCTGA+TGG + chr3_4:50836699-50836718 Msa0505390:CDS 40.0%
CAATTGTCATGGGATCTGAT+GGG + chr3_4:50836700-50836719 Msa0505390:CDS 40.0%
CAACGGTTAGAGCAATTTCA+TGG - chr3_4:50836746-50836765 None:intergenic 40.0%
!! AACAAAGATGTTTCTGAGGC+TGG + chr3_4:50836768-50836787 Msa0505390:CDS 40.0%
!! AGCAAAGGCATTAGCTAACT+TGG + chr3_4:50836875-50836894 Msa0505390:intron 40.0%
TGATTCTCCGTATTCATTGG+AGG + chr3_4:50836926-50836945 Msa0505390:CDS 40.0%
! CATGGTGGAAGAAAGTTCTT+GGG + chr3_4:50837298-50837317 Msa0505390:CDS 40.0%
CTCTGGTGATCTTAACAATC+AGG - chr3_4:50837514-50837533 None:intergenic 40.0%
TTAGTGCCACGGTATACTTA+AGG - chr3_4:50837546-50837565 None:intergenic 40.0%
TATACCGTGGCACTAAACTT+TGG + chr3_4:50837550-50837569 Msa0505390:three_prime_UTR 40.0%
ATGACCAAAGTTTAGTGCCA+CGG - chr3_4:50837557-50837576 None:intergenic 40.0%
CTTGAAGGTTGAGAAAGGTG+GGG + chr3_4:50834512-50834531 Msa0505390:intron 45.0%
! GGAGTTATTGCTGTTGCTGA+TGG + chr3_4:50834567-50834586 Msa0505390:CDS 45.0%
GCATTAGCCATCAATTCACG+TGG - chr3_4:50835023-50835042 None:intergenic 45.0%
! CAGTATCTGCGTTTAGGGTA+CGG - chr3_4:50835074-50835093 None:intergenic 45.0%
CATGCTGCTACATTCTCTAC+AGG + chr3_4:50835318-50835337 Msa0505390:CDS 45.0%
! GTGAAGCATCATTGCTATGC+TGG + chr3_4:50835477-50835496 Msa0505390:intron 45.0%
!! TTTCTCGGTGTTCTCCTTTC+AGG + chr3_4:50835649-50835668 Msa0505390:intron 45.0%
! TCTCAGAGCTCAGTTGGTAT+GGG - chr3_4:50835720-50835739 None:intergenic 45.0%
!! ATACCAACTGAGCTCTGAGA+GGG + chr3_4:50835720-50835739 Msa0505390:CDS 45.0%
! GTGTAGCATCGGATTATGCT+GGG - chr3_4:50836002-50836021 None:intergenic 45.0%
! TGTGTAGCATCGGATTATGC+TGG - chr3_4:50836003-50836022 None:intergenic 45.0%
!! GGGGTATTGTTGTGTAGCAT+CGG - chr3_4:50836013-50836032 None:intergenic 45.0%
CACTTATTATGAGACGGAGG+GGG - chr3_4:50836032-50836051 None:intergenic 45.0%
CGTTGACACATAAACACCAC+CGG + chr3_4:50836249-50836268 Msa0505390:intron 45.0%
CACCGACATGAAAATGACAC+AGG - chr3_4:50836313-50836332 None:intergenic 45.0%
!!! CTGTGTCATTTTCATGTCGG+TGG + chr3_4:50836311-50836330 Msa0505390:intron 45.0%
!!! TGTCATTTTCATGTCGGTGG+CGG + chr3_4:50836314-50836333 Msa0505390:intron 45.0%
TCACGTGCCAGCCAAAATAT+TGG + chr3_4:50836390-50836409 Msa0505390:intron 45.0%
!! GCCAGCCAAAATATTGGCTT+TGG + chr3_4:50836396-50836415 Msa0505390:intron 45.0%
!!! CCCAAAGCCAATATTTTGGC+TGG - chr3_4:50836400-50836419 None:intergenic 45.0%
CACAACACAACTTCCCAAAG+GGG + chr3_4:50836571-50836590 Msa0505390:intron 45.0%
GGAAGGAGACACAATTGTCA+TGG + chr3_4:50836689-50836708 Msa0505390:CDS 45.0%
!! AGATGTTTCTGAGGCTGGTA+TGG + chr3_4:50836773-50836792 Msa0505390:intron 45.0%
GAGGAATTGCGATCAACTGT+AGG + chr3_4:50836820-50836839 Msa0505390:intron 45.0%
CTTGGCAAACAGTCATGCAA+TGG + chr3_4:50836893-50836912 Msa0505390:CDS 45.0%
TCCGTATTCATTGGAGGCAA+GGG + chr3_4:50836932-50836951 Msa0505390:CDS 45.0%
!!! TACAGGGTTTTGAAGCTCCA+TGG + chr3_4:50837280-50837299 Msa0505390:intron 45.0%
CCAAGAACTTTCTTCCACCA+TGG - chr3_4:50837300-50837319 None:intergenic 45.0%
! CCATGGTGGAAGAAAGTTCT+TGG + chr3_4:50837297-50837316 Msa0505390:CDS 45.0%
GTTCTTGGGATGAAGTTGAC+AGG + chr3_4:50837312-50837331 Msa0505390:CDS 45.0%
TGGGATGAAGTTGACAGGTA+TGG + chr3_4:50837317-50837336 Msa0505390:intron 45.0%
ACTTAAGGCAACTCCTTCTC+TGG - chr3_4:50837531-50837550 None:intergenic 45.0%
GAGTTGCCTTAAGTATACCG+TGG + chr3_4:50837537-50837556 Msa0505390:three_prime_UTR 45.0%
GCAAAGCAAGAGAACTTCCA+TGG - chr3_4:50837599-50837618 None:intergenic 45.0%
! CTGTTGCTGATGGTGTCTCT+GGG + chr3_4:50834577-50834596 Msa0505390:CDS 50.0%
! CTCTCAGAGCTCAGTTGGTA+TGG - chr3_4:50835721-50835740 None:intergenic 50.0%
!! CATACCAACTGAGCTCTGAG+AGG + chr3_4:50835719-50835738 Msa0505390:CDS 50.0%
! CTACACTTGTCTGAGACGGA+AGG + chr3_4:50836172-50836191 Msa0505390:intron 50.0%
CTCCGTATTCATTGGAGGCA+AGG + chr3_4:50836931-50836950 Msa0505390:CDS 50.0%
GCCCTTGCCTCCAATGAATA+CGG - chr3_4:50836936-50836955 None:intergenic 50.0%
!!! AGGGTTTTGAAGCTCCATGG+TGG + chr3_4:50837283-50837302 Msa0505390:intron 50.0%
! GCTGTTGCTGATGGTGTCTC+TGG + chr3_4:50834576-50834595 Msa0505390:CDS 55.0%
GCTTCACAGTTGGGCTGAAG+AGG + chr3_4:50834977-50834996 Msa0505390:intron 55.0%
CAACCCTCTCAGAGCTCAGT+TGG - chr3_4:50835726-50835745 None:intergenic 55.0%
!! CAACTGAGCTCTGAGAGGGT+TGG + chr3_4:50835724-50835743 Msa0505390:CDS 55.0%
TTCATTGGAGGCAAGGGCCA+AGG + chr3_4:50836938-50836957 Msa0505390:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 50834062 50837819 50834062 ID=Msa0505390;Name=Msa0505390
chr3_4 mRNA 50834062 50837819 50834062 ID=Msa0505390-mRNA-1;Parent=Msa0505390;Name=Msa0505390-mRNA-1;_AED=0.21;_eAED=0.21;_QI=65|1|1|1|1|1|11|355|308
chr3_4 exon 50834062 50834281 50834062 ID=Msa0505390-mRNA-1:exon:11046;Parent=Msa0505390-mRNA-1
chr3_4 exon 50834374 50834428 50834374 ID=Msa0505390-mRNA-1:exon:11047;Parent=Msa0505390-mRNA-1
chr3_4 exon 50834519 50834598 50834519 ID=Msa0505390-mRNA-1:exon:11048;Parent=Msa0505390-mRNA-1
chr3_4 exon 50834986 50835067 50834986 ID=Msa0505390-mRNA-1:exon:11049;Parent=Msa0505390-mRNA-1
chr3_4 exon 50835282 50835352 50835282 ID=Msa0505390-mRNA-1:exon:11050;Parent=Msa0505390-mRNA-1
chr3_4 exon 50835483 50835562 50835483 ID=Msa0505390-mRNA-1:exon:11051;Parent=Msa0505390-mRNA-1
chr3_4 exon 50835671 50835768 50835671 ID=Msa0505390-mRNA-1:exon:11052;Parent=Msa0505390-mRNA-1
chr3_4 exon 50836669 50836789 50836669 ID=Msa0505390-mRNA-1:exon:11053;Parent=Msa0505390-mRNA-1
chr3_4 exon 50836877 50836959 50836877 ID=Msa0505390-mRNA-1:exon:11054;Parent=Msa0505390-mRNA-1
chr3_4 exon 50837285 50837333 50837285 ID=Msa0505390-mRNA-1:exon:11055;Parent=Msa0505390-mRNA-1
chr3_4 exon 50837412 50837819 50837412 ID=Msa0505390-mRNA-1:exon:11056;Parent=Msa0505390-mRNA-1
chr3_4 five_prime_UTR 50834062 50834126 50834062 ID=Msa0505390-mRNA-1:five_prime_utr;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50834127 50834281 50834127 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50834374 50834428 50834374 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50834519 50834598 50834519 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50834986 50835067 50834986 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50835282 50835352 50835282 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50835483 50835562 50835483 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50835671 50835768 50835671 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50836669 50836789 50836669 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50836877 50836959 50836877 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50837285 50837333 50837285 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 CDS 50837412 50837464 50837412 ID=Msa0505390-mRNA-1:cds;Parent=Msa0505390-mRNA-1
chr3_4 three_prime_UTR 50837465 50837819 50837465 ID=Msa0505390-mRNA-1:three_prime_utr;Parent=Msa0505390-mRNA-1
Gene Sequence

>Msa0505390

ATGGCTATTTCAATATTGAGAGCTGTAATGGTGTCTAATTCTCATTGTCAATCTCAACCACACATTCATAACATATCTTCTATTGATGAAAATGCTAAAAGGAGGAAAAGAGTAGTTTTCTCTTCTCATTCTTCAGAACTTAACCCTGTAATTAGGTCATCAGAGGTTTCATTTTCTGTTGGGACTTGCCTTATTCCACATCCAAAAAAGGTTGAGAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAACTATAATGGTGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAAGAGGATGTAGATCCTTCATTATTCCCACGTGAATTGATGGCTAATGCTTATAATTTTGTACAAGATGAGGAGGTGAATAATGATCCTCAGATTCTTATAAGGAAAGCACATGCTGCTACATTCTCTACAGGCTCAGCAACTGTCATCATTGCTATGCTGGAAAAGAATGGGAATCTAAAGATTGCCAATGTTGGTGATTGTGGATTACGAGTTATCCGTAATGGTCAAGTAATCTTTTCCACTTCTCCACAAGAACATTACTTTGACTGCCCATACCAACTGAGCTCTGAGAGGGTTGGCCAAACATACCTTGATGCAATGGTAAGTAATGTGGAGTTGATGGAAGGAGACACAATTGTCATGGGATCTGATGGGCTTTTTGATAATGGTTTTGACCATGAAATTGCTCTAACCGTTGCAAACAAAGATGTTTCTGAGGCTGCAAAGGCATTAGCTAACTTGGCAAACAGTCATGCAATGGATTCAAATTTTGATTCTCCGTATTCATTGGAGGCAAGGGCCAAGGGTTTTGAAGCTCCATGGTGGAAGAAAGTTCTTGGGATGAAGTTGACAGGTGGAAAGCTTGATGATATTACTGTAATTGTTGGTCAGGTTATAAATTCATGA

Protein sequence

>Msa0505390

MAISILRAVMVSNSHCQSQPHIHNISSIDENAKRRKRVVFSSHSSELNPVIRSSEVSFSVGTCLIPHPKKVEKGGEDAFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMANAYNFVQDEEVNNDPQILIRKAHAATFSTGSATVIIAMLEKNGNLKIANVGDCGLRVIRNGQVIFSTSPQEHYFDCPYQLSSERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNGFDHEIALTVANKDVSEAAKALANLANSHAMDSNFDSPYSLEARAKGFEAPWWKKVLGMKLTGGKLDDITVIVGQVINS*