AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0205110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0205110 MtrunA17_Chr2g0303251 100.000 216 0 0 1 216 1 216 3.41e-155 428
Msa0205110 MtrunA17_Chr1g0183621 73.364 214 53 1 1 214 5 214 2.69e-114 325
Msa0205110 MtrunA17_Chr7g0261511 77.103 214 45 1 1 214 1 210 1.86e-104 300
Msa0205110 MtrunA17_Chr2g0300321 40.909 220 124 1 3 216 4 223 1.04e-41 140
Msa0205110 MtrunA17_Chr8g0343561 43.750 176 99 0 3 178 4 179 1.35e-38 133
Msa0205110 MtrunA17_Chr4g0028231 29.730 222 148 1 1 214 5 226 1.07e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0205110 AT5G44560.1 83.784 222 30 1 1 216 1 222 8.32e-130 365
Msa0205110 AT5G44560.2 83.168 202 28 1 21 216 1 202 2.16e-115 327
Msa0205110 AT5G44560.4 88.764 178 20 0 1 178 1 178 3.65e-114 324
Msa0205110 AT1G03950.1 71.963 214 56 1 1 214 1 210 1.09e-110 316
Msa0205110 AT5G44560.3 84.000 150 24 0 1 150 1 150 3.16e-88 257
Msa0205110 AT2G06530.1 41.518 224 123 2 1 216 2 225 5.24e-44 147
Msa0205110 AT2G06530.2 40.500 200 112 1 24 216 5 204 1.15e-36 127
Msa0205110 AT5G22950.1 32.589 224 141 3 1 214 5 228 1.47e-16 75.9

Find 66 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTATCCAAATTGTGAAAA+TGG 0.217235 2_1:-31379181 Msa0205110:three_prime_UTR
TGACAGGTTCTTGATGAAAT+TGG 0.228952 2_1:-31380167 Msa0205110:intron
CCTCTGCTTGGATTAGGTTT+TGG 0.243723 2_1:-31385640 Msa0205110:five_prime_UTR
CATTGCCACCATTGCTTTAG+TGG 0.261194 2_1:+31382070 None:intergenic
CCAGTTGTGCTGATTGCTTT+TGG 0.285128 2_1:+31381580 None:intergenic
AATTCTGCGTTTGTTTGTTT+AGG 0.295849 2_1:-31379514 Msa0205110:three_prime_UTR
GAGGAGAGACCTTTGGGCTT+GGG 0.317763 2_1:+31385780 None:intergenic
TAACATCCTCTGCTTGGATT+AGG 0.323944 2_1:-31385646 Msa0205110:five_prime_UTR
ATCACTTTAGCCTGCTTTGC+CGG 0.327935 2_1:+31381612 None:intergenic
CAACAATAAGATTGTATTAT+CGG 0.338889 2_1:-31379619 Msa0205110:three_prime_UTR
AGCAATGGTGGCAATGAATA+AGG 0.349876 2_1:-31382063 Msa0205110:intron
GCCACTTGAAACATTTAGTT+AGG 0.365262 2_1:+31379461 None:intergenic
AGGGAAGTCGTGCACAGATC+AGG 0.381377 2_1:-31382236 Msa0205110:CDS
CTTGAAGCAATCCGACCTTT+CGG 0.382816 2_1:+31379874 None:intergenic
TGAAGAACTTGAAAAGAGAT+TGG 0.400428 2_1:-31379712 Msa0205110:CDS
TCCTGGCTCGGCAGCTAGTT+AGG 0.403556 2_1:-31382284 Msa0205110:CDS
CCAAAAGCAATCAGCACAAC+TGG 0.415296 2_1:-31381580 Msa0205110:CDS
AGAGGAGAGACCTTTGGGCT+TGG 0.420406 2_1:+31385779 None:intergenic
GAGCGTGTGCTGTGTATTGT+TGG 0.425905 2_1:+31385803 None:intergenic
GCAAGCACTTCAATCTCTAC+AGG 0.426499 2_1:-31382104 Msa0205110:CDS
AGAGAAATTATTTGCAGCTA+AGG 0.435040 2_1:-31379220 Msa0205110:three_prime_UTR
CGAAAGGTCGGATTGCTTCA+AGG 0.442942 2_1:-31379873 Msa0205110:CDS
TTCAATCTCTACAGGGATGA+AGG 0.458265 2_1:-31382096 Msa0205110:CDS
TGAATGTGTTAGATATAAAG+TGG 0.460118 2_1:-31379570 Msa0205110:three_prime_UTR
GTACCGCGGGCACCTGCATA+AGG 0.463608 2_1:-31379375 Msa0205110:three_prime_UTR
AGGAGAGACCTTTGGGCTTG+GGG 0.466236 2_1:+31385781 None:intergenic
TGGAGTGGATATTGCATCCC+AGG 0.474380 2_1:-31380147 Msa0205110:intron
ACCTAACTAGCTGCCGAGCC+AGG 0.485867 2_1:+31382283 None:intergenic
GCAAATGGCACCGGCAAAGC+AGG 0.491669 2_1:-31381622 Msa0205110:CDS
CCTGCAGATTAGTTATCTGT+TGG 0.504006 2_1:+31382256 None:intergenic
CCAACAGATAACTAATCTGC+AGG 0.509427 2_1:-31382256 Msa0205110:CDS
GGGAAGTCGTGCACAGATCA+GGG 0.524632 2_1:-31382235 Msa0205110:CDS
AGAGATAGCATCACTTCAGA+TGG 0.527919 2_1:-31384529 Msa0205110:CDS
ACAGGCTTCTACTAAAATCC+TGG 0.535270 2_1:-31382301 Msa0205110:intron
GATGAACGAACCTTTGGGTG+TGG 0.536552 2_1:+31385583 None:intergenic
CTACTGTAACATCCTCTGCT+TGG 0.536805 2_1:-31385652 Msa0205110:five_prime_UTR
ATCTTCTCAGCAAATGGCAC+CGG 0.537436 2_1:-31381631 Msa0205110:intron
ACTGCAGGAAAAGAAGTTAG+TGG 0.545088 2_1:-31384424 Msa0205110:intron
AGCGTGTGCTGTGTATTGTT+GGG 0.550408 2_1:+31385804 None:intergenic
ATTTAATCAGTAACAAAATG+AGG 0.564531 2_1:+31379594 None:intergenic
GAAATGTCTGTTGCAACTAG+AGG 0.569526 2_1:-31385417 Msa0205110:intron
AGTGGCAGAGATTAAAAGAG+AGG 0.575160 2_1:-31384406 Msa0205110:CDS
TCAATCTCTACAGGGATGAA+GGG 0.583879 2_1:-31382095 Msa0205110:CDS
TATCTTCTGCTCCGAAAGGT+CGG 0.586806 2_1:-31379885 Msa0205110:CDS
TGGCAGTCAATAAGCTACTT+CGG 0.587003 2_1:-31379442 Msa0205110:three_prime_UTR
GAATGTGTTAGATATAAAGT+GGG 0.590793 2_1:-31379569 Msa0205110:three_prime_UTR
TCCTAACTAAATGTTTCAAG+TGG 0.596759 2_1:-31379462 Msa0205110:three_prime_UTR
CTTCTACTAAAATCCTGGCT+CGG 0.598970 2_1:-31382296 Msa0205110:CDS
GGTTCTTGATGAAATTGGAG+TGG 0.601589 2_1:-31380162 Msa0205110:CDS
ATGCTGAAAATGCTGCTCCA+AGG 0.612137 2_1:-31379849 Msa0205110:intron
CAAGCACTTCAATCTCTACA+GGG 0.614124 2_1:-31382103 Msa0205110:CDS
GATAGCATCACTTCAGATGG+AGG 0.618277 2_1:-31384526 Msa0205110:intron
ATCAGCACAACTGGACATGA+CGG 0.620669 2_1:-31381571 Msa0205110:intron
AAGAAGAAAACCACACCCAA+AGG 0.621044 2_1:-31385593 Msa0205110:intron
GGGTGCCACTAAAGCAATGG+TGG 0.624027 2_1:-31382075 Msa0205110:CDS
GAAGGGTGCCACTAAAGCAA+TGG 0.625367 2_1:-31382078 Msa0205110:CDS
ATCAGAAGAACTCACTAACC+AGG 0.628471 2_1:-31380283 Msa0205110:intron
ACACCTTATGCAGGTGCCCG+CGG 0.629981 2_1:+31379372 None:intergenic
AGTCAATAAGCTACTTCGGT+CGG 0.630662 2_1:-31379438 Msa0205110:three_prime_UTR
TAGTTATCTTCTGCTCCGAA+AGG 0.634306 2_1:-31379889 Msa0205110:CDS
CACACGCTCCCCAAGCCCAA+AGG 0.634408 2_1:-31385789 Msa0205110:intron
TTTAGACAAAGATGAAGCTG+AGG 0.636787 2_1:-31380310 Msa0205110:CDS
CCAAAACCTAATCCAAGCAG+AGG 0.637197 2_1:+31385640 None:intergenic
GGAAGTCGTGCACAGATCAG+GGG 0.664483 2_1:-31382234 Msa0205110:CDS
GGGTGTAGCAACTCACACAC+AGG 0.671175 2_1:-31382214 Msa0205110:intron
CAACAGATAACTAATCTGCA+GGG 0.676896 2_1:-31382255 Msa0205110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTAAA+TGG + chr2_1:31380152-31380171 None:intergenic 0.0%
!! TCATATATAAAAAAATCAAA+TGG + chr2_1:31379706-31379725 None:intergenic 10.0%
!! AAAAAAAAAAAAAACAGTTA+AGG - chr2_1:31380159-31380178 Msa0205110:CDS 10.0%
!!! AACTTTTATGAAAATTTTTA+CGG - chr2_1:31383645-31383664 Msa0205110:intron 10.0%
!!! TTAATTACTTTTATGAATAT+TGG - chr2_1:31385054-31385073 Msa0205110:intron 10.0%
!!! TAATTACTTTTATGAATATT+GGG - chr2_1:31385055-31385074 Msa0205110:intron 10.0%
!!! ATTTTTTTACCTTTCTAAAT+AGG - chr2_1:31379758-31379777 Msa0205110:intron 15.0%
!!! TAATTTTTTCCTATTTAGAA+AGG + chr2_1:31379770-31379789 None:intergenic 15.0%
!!! CATTATTTTAAGGTATTATA+AGG + chr2_1:31379793-31379812 None:intergenic 15.0%
!! AGTTACAATCAAATAATTAA+AGG - chr2_1:31380011-31380030 Msa0205110:intron 15.0%
!!! TCTTTATTTAGATGTATTTT+TGG - chr2_1:31380664-31380683 Msa0205110:intron 15.0%
!!! CTTTATTTAGATGTATTTTT+GGG - chr2_1:31380665-31380684 Msa0205110:intron 15.0%
!! TAAATAAATAGATTTCTAAC+TGG + chr2_1:31382399-31382418 None:intergenic 15.0%
!! ATATATATAATCTAATGCTA+TGG + chr2_1:31384507-31384526 None:intergenic 15.0%
!!! TAGATCGAATTTAAGATTTA+GGG + chr2_1:31379454-31379473 None:intergenic 20.0%
!!! TTATTCTTATTTTACAAGTC+TGG - chr2_1:31379611-31379630 Msa0205110:three_prime_UTR 20.0%
!! AATCAAATAATTAAAGGTGA+AGG - chr2_1:31380017-31380036 Msa0205110:intron 20.0%
!! ATCAAATAATTAAAGGTGAA+GGG - chr2_1:31380018-31380037 Msa0205110:intron 20.0%
!! AATAAAGATTGTTATCGATA+TGG + chr2_1:31380652-31380671 None:intergenic 20.0%
!!! TTGGGTATTTTTTTCTTAAT+TGG - chr2_1:31380683-31380702 Msa0205110:intron 20.0%
!!! TGGGTATTTTTTTCTTAATT+GGG - chr2_1:31380684-31380703 Msa0205110:intron 20.0%
!!! TTTTTTCTTAATTGGGATTA+AGG - chr2_1:31380691-31380710 Msa0205110:intron 20.0%
!! ATGATAGATATTTGTATGTT+TGG + chr2_1:31380875-31380894 None:intergenic 20.0%
!! GATCGTTTAAATACAAAAAT+TGG + chr2_1:31381201-31381220 None:intergenic 20.0%
!! AAAAATTGAATTTCAAGCTA+TGG + chr2_1:31381565-31381584 None:intergenic 20.0%
!! TCATTATCAATATTCATGAA+TGG + chr2_1:31381800-31381819 None:intergenic 20.0%
!! ATTTAGAGGAGAATTATATA+GGG + chr2_1:31382166-31382185 None:intergenic 20.0%
!!! TAATGATTTCTTTTTGCAAA+AGG + chr2_1:31382356-31382375 None:intergenic 20.0%
!!! TACATTGTTGTCTTTATTTT+TGG - chr2_1:31382460-31382479 Msa0205110:intron 20.0%
!!! AATTTCCAAATTTCTTTTGT+AGG - chr2_1:31382859-31382878 Msa0205110:intron 20.0%
!!! AATGAATAAGGTATATTTTC+TGG - chr2_1:31382943-31382962 Msa0205110:intron 20.0%
!!! ATGAATAAGGTATATTTTCT+GGG - chr2_1:31382944-31382963 Msa0205110:intron 20.0%
!! TTAAGTTACTCTTAACATAT+TGG + chr2_1:31383124-31383143 None:intergenic 20.0%
!!! CTTTTAGTATTTTTTTGAGA+GGG - chr2_1:31383510-31383529 Msa0205110:intron 20.0%
!!! GAACAATTATTAGTCTTTTT+TGG - chr2_1:31383583-31383602 Msa0205110:intron 20.0%
!! ATAAACTAGGAGTTAAATAA+AGG - chr2_1:31383776-31383795 Msa0205110:intron 20.0%
!! AATAATGAAATTGAAGAGTA+TGG - chr2_1:31383832-31383851 Msa0205110:intron 20.0%
!!! ATAATGAAATTGAAGAGTAT+GGG - chr2_1:31383833-31383852 Msa0205110:intron 20.0%
!! TGTAAGAACTAAAATAAGTA+AGG - chr2_1:31384147-31384166 Msa0205110:intron 20.0%
!! GTAAGAACTAAAATAAGTAA+GGG - chr2_1:31384148-31384167 Msa0205110:intron 20.0%
!!! ACATATTTTAAACTACCAAA+AGG - chr2_1:31384203-31384222 Msa0205110:intron 20.0%
!!! CATATTTTAAACTACCAAAA+GGG - chr2_1:31384204-31384223 Msa0205110:intron 20.0%
!!! ATATTTTAAACTACCAAAAG+GGG - chr2_1:31384205-31384224 Msa0205110:intron 20.0%
!!! CGGATAACATTATAAAATTT+TGG + chr2_1:31384539-31384558 None:intergenic 20.0%
!! GACTAACATAATGAAATATT+GGG + chr2_1:31384884-31384903 None:intergenic 20.0%
!! TGACTAACATAATGAAATAT+TGG + chr2_1:31384885-31384904 None:intergenic 20.0%
!! AATAAGATTGAAATATACCT+TGG + chr2_1:31385165-31385184 None:intergenic 20.0%
!! GTATATTTCAATCTTATTCA+TGG - chr2_1:31385167-31385186 Msa0205110:intron 20.0%
!! CAACAATAAGATTGTATTAT+CGG - chr2_1:31385375-31385394 Msa0205110:intron 20.0%
!! ATTTAATCAGTAACAAAATG+AGG + chr2_1:31385403-31385422 None:intergenic 20.0%
! AAAAAAGTAATGTAAGAGAG+AGG + chr2_1:31379236-31379255 None:intergenic 25.0%
!! CTAGATCGAATTTAAGATTT+AGG + chr2_1:31379455-31379474 None:intergenic 25.0%
! ATGAATTGCTAGAATAGAAA+AGG - chr2_1:31379728-31379747 Msa0205110:CDS 25.0%
! TTCATAGCTTATAATTCGTA+GGG - chr2_1:31379958-31379977 Msa0205110:intron 25.0%
! TCAAATAATTAAAGGTGAAG+GGG - chr2_1:31380019-31380038 Msa0205110:intron 25.0%
!! GTATAACTTTTCTTTCTTGT+AGG - chr2_1:31380433-31380452 Msa0205110:intron 25.0%
! AGATATTTGTATGTTTGGAT+TGG + chr2_1:31380870-31380889 None:intergenic 25.0%
! TAAAGGTCTGTTTACTAAAT+GGG + chr2_1:31380985-31381004 None:intergenic 25.0%
! ATAAAGGTCTGTTTACTAAA+TGG + chr2_1:31380986-31381005 None:intergenic 25.0%
! ACTACAGTTAAAGATTGTAT+TGG + chr2_1:31381145-31381164 None:intergenic 25.0%
! AAAAATTGGATTTCAAGCTA+TGG + chr2_1:31381187-31381206 None:intergenic 25.0%
! ATAAAGGTCTGATTACTAAA+CGG + chr2_1:31381366-31381385 None:intergenic 25.0%
! TCTTAAGGACACAATAAATT+GGG + chr2_1:31381878-31381897 None:intergenic 25.0%
! TTCTTAAGGACACAATAAAT+TGG + chr2_1:31381879-31381898 None:intergenic 25.0%
!! ACATGTTCTTGATTTTCTTA+AGG + chr2_1:31381893-31381912 None:intergenic 25.0%
! GATTTAGAGGAGAATTATAT+AGG + chr2_1:31382167-31382186 None:intergenic 25.0%
!! ATATTCAAAGCATTTCTTCA+TGG + chr2_1:31382191-31382210 None:intergenic 25.0%
!! GTTTCTTTTTACAACTAGTT+TGG - chr2_1:31382309-31382328 Msa0205110:intron 25.0%
!! GGATGTTTATGATTGTTATT+AGG + chr2_1:31382335-31382354 None:intergenic 25.0%
! CAAAAAGAAATCATTATGCT+AGG - chr2_1:31382360-31382379 Msa0205110:intron 25.0%
! TAAATAGATTTCTAACTGGA+CGG + chr2_1:31382395-31382414 None:intergenic 25.0%
!!! TGTCTTTATTTTTGGTTGAA+TGG - chr2_1:31382468-31382487 Msa0205110:intron 25.0%
!!! TTTATTTTTGGTTGAATGGA+GGG - chr2_1:31382472-31382491 Msa0205110:intron 25.0%
!! AAAATTCTTCTTTCTTTTCG+AGG - chr2_1:31382812-31382831 Msa0205110:intron 25.0%
!! AAATTCTTCTTTCTTTTCGA+GGG - chr2_1:31382813-31382832 Msa0205110:intron 25.0%
! TAATGCCTACAAAAGAAATT+TGG + chr2_1:31382867-31382886 None:intergenic 25.0%
!! CTTTCCATTGTTCAAAATTT+TGG - chr2_1:31382976-31382995 Msa0205110:intron 25.0%
!! TAGTCCAAAATTTTGAACAA+TGG + chr2_1:31382983-31383002 None:intergenic 25.0%
! AAGAGTAACTTAACTTTCAT+AGG - chr2_1:31383131-31383150 Msa0205110:intron 25.0%
!!! GCTTTTAGTATTTTTTTGAG+AGG - chr2_1:31383509-31383528 Msa0205110:intron 25.0%
! AGACTAATAATTGTTCATTG+TGG + chr2_1:31383579-31383598 None:intergenic 25.0%
! GTGCTTACTTAATAGAAATT+TGG - chr2_1:31383700-31383719 Msa0205110:intron 25.0%
!! TAATGAAATTGAAGAGTATG+GGG - chr2_1:31383834-31383853 Msa0205110:intron 25.0%
!!! ACAAATACTTTTGAAGATTG+TGG - chr2_1:31384044-31384063 Msa0205110:intron 25.0%
!!! CAAATACTTTTGAAGATTGT+GGG - chr2_1:31384045-31384064 Msa0205110:intron 25.0%
! CAGAAAATATTGATGAAACT+TGG - chr2_1:31384580-31384599 Msa0205110:intron 25.0%
! TTTCGGATAACATAAATTGT+TGG + chr2_1:31384627-31384646 None:intergenic 25.0%
!! GATTTTCATTTATTCATGAC+AGG - chr2_1:31384811-31384830 Msa0205110:intron 25.0%
!!! ATTCTGTTTTTCTCTTCTTA+TGG - chr2_1:31385082-31385101 Msa0205110:intron 25.0%
! TGAATGTGTTAGATATAAAG+TGG - chr2_1:31385424-31385443 Msa0205110:CDS 25.0%
! GAATGTGTTAGATATAAAGT+GGG - chr2_1:31385425-31385444 Msa0205110:CDS 25.0%
GAATCAACACGGTAATAATT+TGG + chr2_1:31379911-31379930 None:intergenic 30.0%
CTTCATAGCTTATAATTCGT+AGG - chr2_1:31379957-31379976 Msa0205110:intron 30.0%
TCATAGCTTATAATTCGTAG+GGG - chr2_1:31379959-31379978 Msa0205110:intron 30.0%
CAAATAATTAAAGGTGAAGG+GGG - chr2_1:31380020-31380039 Msa0205110:intron 30.0%
AAATAATTAAAGGTGAAGGG+GGG - chr2_1:31380021-31380040 Msa0205110:intron 30.0%
TATGAGTTAGCAAAGCTTTA+TGG - chr2_1:31380202-31380221 Msa0205110:intron 30.0%
ATTAAAAGAGAGGCAAAAAC+TGG - chr2_1:31380598-31380617 Msa0205110:intron 30.0%
! TATTTGTATGTTTGGATTGG+CGG + chr2_1:31380867-31380886 None:intergenic 30.0%
CAAGATCTTATGGACAAATT+GGG + chr2_1:31380899-31380918 None:intergenic 30.0%
TCAAGATCTTATGGACAAAT+TGG + chr2_1:31380900-31380919 None:intergenic 30.0%
AAAGCAGTTTCAAGATCTTA+TGG + chr2_1:31380909-31380928 None:intergenic 30.0%
CATCAAAGAAAAGGTGATAA+AGG + chr2_1:31381002-31381021 None:intergenic 30.0%
! AGATTATGAGCATTGCTAAT+AGG - chr2_1:31381065-31381084 Msa0205110:intron 30.0%
!!! ATTGCTAATAGGCTGTTTTT+TGG - chr2_1:31381076-31381095 Msa0205110:intron 30.0%
AGAAGTTTCGTATTTAGTTG+AGG - chr2_1:31381115-31381134 Msa0205110:intron 30.0%
TAAAGGTCTGATTACTAAAC+GGG + chr2_1:31381365-31381384 None:intergenic 30.0%
CATCAAAGAAAAGGTGATAA+AGG + chr2_1:31381002-31381021 None:intergenic 30.0%
ACTATAGTTGAAGGTTGTAT+TGG + chr2_1:31381523-31381542 None:intergenic 30.0%
ATGTCAGTAACTATAGTTGA+AGG + chr2_1:31381532-31381551 None:intergenic 30.0%
TAGCACATTAAGTCAAGAAT+GGG + chr2_1:31381747-31381766 None:intergenic 30.0%
TTAGCACATTAAGTCAAGAA+TGG + chr2_1:31381748-31381767 None:intergenic 30.0%
AATCAAGAACATGTTTGCTT+TGG - chr2_1:31381899-31381918 Msa0205110:intron 30.0%
ATCAAGAACATGTTTGCTTT+GGG - chr2_1:31381900-31381919 Msa0205110:intron 30.0%
AAAGCTAAAATGCTTGTAGT+TGG + chr2_1:31381958-31381977 None:intergenic 30.0%
! AACAATTGACTTTGACACAA+AGG + chr2_1:31381988-31382007 None:intergenic 30.0%
TTTGTGTCAAAGTCAATTGT+TGG - chr2_1:31381987-31382006 Msa0205110:intron 30.0%
ATTTCTTCATGGAGATTTAG+AGG + chr2_1:31382180-31382199 None:intergenic 30.0%
AATTACAAGCAAGAAAGAGT+AGG - chr2_1:31382250-31382269 Msa0205110:CDS 30.0%
AAAAGAAACATTTACACCAG+TGG + chr2_1:31382298-31382317 None:intergenic 30.0%
AAAGAAATCATTATGCTAGG+CGG - chr2_1:31382363-31382382 Msa0205110:intron 30.0%
!!! CTTTATTTTTGGTTGAATGG+AGG - chr2_1:31382471-31382490 Msa0205110:intron 30.0%
ATTTAATAGTGCTTCCAGTT+GGG + chr2_1:31382589-31382608 None:intergenic 30.0%
AATTTAATAGTGCTTCCAGT+TGG + chr2_1:31382590-31382609 None:intergenic 30.0%
! TTGCTAAATAATGAAGTGTC+TGG - chr2_1:31382668-31382687 Msa0205110:intron 30.0%
TTGTATTGAAGTGTAAACCA+TGG + chr2_1:31383195-31383214 None:intergenic 30.0%
ACTTTAGATTCAATGCAAAC+AGG + chr2_1:31383249-31383268 None:intergenic 30.0%
! TAATGTGTTAGATGCTTTTC+TGG - chr2_1:31383272-31383291 Msa0205110:intron 30.0%
!!! TTAGTATTTTTTTGAGAGGG+AGG - chr2_1:31383513-31383532 Msa0205110:intron 30.0%
! CCTTCAATTAGTTCTTTATC+TGG + chr2_1:31383749-31383768 None:intergenic 30.0%
CCAGATAAAGAACTAATTGA+AGG - chr2_1:31383746-31383765 Msa0205110:intron 30.0%
TGAAGGAACAACAATAAACT+AGG - chr2_1:31383763-31383782 Msa0205110:intron 30.0%
AAAGAGAGAAAAAACACAGA+AGG - chr2_1:31383999-31384018 Msa0205110:intron 30.0%
! TTAGTTCTTACACTTACGTT+TGG + chr2_1:31384139-31384158 None:intergenic 30.0%
ATTACACATGTCAATTAGCT+TGG - chr2_1:31384409-31384428 Msa0205110:CDS 30.0%
ATATAATCTAATGCTATGGC+TGG + chr2_1:31384503-31384522 None:intergenic 30.0%
GTCATTTATGTATATGTACC+TGG + chr2_1:31384732-31384751 None:intergenic 30.0%
ATGAAAATCAGATATGACAG+AGG + chr2_1:31384800-31384819 None:intergenic 30.0%
TGAAGAACTTGAAAAGAGAT+TGG - chr2_1:31385282-31385301 Msa0205110:intron 30.0%
AATTCTGCGTTTGTTTGTTT+AGG - chr2_1:31385480-31385499 Msa0205110:intron 30.0%
TCCTAACTAAATGTTTCAAG+TGG - chr2_1:31385532-31385551 Msa0205110:intron 30.0%
AGAGAAATTATTTGCAGCTA+AGG - chr2_1:31385774-31385793 Msa0205110:intron 30.0%
CACTATCCAAATTGTGAAAA+TGG - chr2_1:31385813-31385832 Msa0205110:five_prime_UTR 30.0%
CTTGAATGTAACCAATGTGT+CGG + chr2_1:31379875-31379894 None:intergenic 35.0%
GAACAGACATTGAATCAACA+CGG + chr2_1:31379922-31379941 None:intergenic 35.0%
!!! CGTAGGGGTTTTTTAATGTT+TGG - chr2_1:31379974-31379993 Msa0205110:intron 35.0%
TGATTTGAGCTAAGGGTTAA+TGG - chr2_1:31380054-31380073 Msa0205110:intron 35.0%
TCAAGTAAACTCCAATGGTT+TGG + chr2_1:31380318-31380337 None:intergenic 35.0%
CTTCATCAAGTAAACTCCAA+TGG + chr2_1:31380323-31380342 None:intergenic 35.0%
TTGGAGTTTACTTGATGAAG+TGG - chr2_1:31380323-31380342 Msa0205110:CDS 35.0%
CTTCTGATGTTACAAGACTT+TGG - chr2_1:31380369-31380388 Msa0205110:intron 35.0%
ACTTATTCCTCAACTAGAGA+GGG + chr2_1:31380777-31380796 None:intergenic 35.0%
CAGTGGAATTGTCATAATCA+CGG - chr2_1:31380812-31380831 Msa0205110:intron 35.0%
ACATCAATTGGTAGGTTTGT+TGG + chr2_1:31380951-31380970 None:intergenic 35.0%
TAGCATAATGAGACAATGCA+AGG + chr2_1:31381039-31381058 None:intergenic 35.0%
ACGACACTTCATCAAAGAAA+AGG + chr2_1:31381391-31381410 None:intergenic 35.0%
TAGTTGAAGGTTGTATTGGA+TGG + chr2_1:31381519-31381538 None:intergenic 35.0%
! CAAGTACGTATAAGAGTATG+AGG - chr2_1:31381644-31381663 Msa0205110:intron 35.0%
!! TAGAGGGAATTTTCTAGAAG+TGG + chr2_1:31381724-31381743 None:intergenic 35.0%
TTAAGTCAAGAATGGGTAGA+GGG + chr2_1:31381740-31381759 None:intergenic 35.0%
ATTAAGTCAAGAATGGGTAG+AGG + chr2_1:31381741-31381760 None:intergenic 35.0%
TCCTTTATTGCTTGTACTCT+TGG - chr2_1:31381774-31381793 Msa0205110:intron 35.0%
! ACACAATAAATTGGGTTGCA+AGG + chr2_1:31381870-31381889 None:intergenic 35.0%
TCATGCATTCCAAATCAGTT+CGG + chr2_1:31382632-31382651 None:intergenic 35.0%
! ATAATGAAGTGTCTGGTTAC+AGG - chr2_1:31382675-31382694 Msa0205110:intron 35.0%
CAACAGATAACTAATCTGCA+GGG - chr2_1:31382739-31382758 Msa0205110:intron 35.0%
ACAATCAGTTTATGACCCAA+AGG - chr2_1:31383038-31383057 Msa0205110:intron 35.0%
CAATCAGTTTATGACCCAAA+GGG - chr2_1:31383039-31383058 Msa0205110:intron 35.0%
TTTGTTTGCTTCTTTGGCAA+AGG + chr2_1:31383092-31383111 None:intergenic 35.0%
!! TGTTGCTTTGTTTGCTTCTT+TGG + chr2_1:31383098-31383117 None:intergenic 35.0%
ATTGAAGTGTAAACCATGGA+TGG + chr2_1:31383191-31383210 None:intergenic 35.0%
! ATTTGCTGAGAAGATAAGCA+AGG + chr2_1:31383358-31383377 None:intergenic 35.0%
TTGCTTATCTTCTCAGCAAA+TGG - chr2_1:31383357-31383376 Msa0205110:intron 35.0%
ATTAAGTAAGCACCACCTTT+GGG + chr2_1:31383693-31383712 None:intergenic 35.0%
TATTAAGTAAGCACCACCTT+TGG + chr2_1:31383694-31383713 None:intergenic 35.0%
TTGTGAAACTGTCATCAAGA+TGG - chr2_1:31383868-31383887 Msa0205110:intron 35.0%
ACTATACTGAAGACGATAGT+GGG - chr2_1:31383933-31383952 Msa0205110:intron 35.0%
TTCTAGCAAAAGCAAGGTAA+TGG - chr2_1:31384297-31384316 Msa0205110:intron 35.0%
CATCATCTCAATCTGCATTT+CGG + chr2_1:31384644-31384663 None:intergenic 35.0%
TTTAGACAAAGATGAAGCTG+AGG - chr2_1:31384684-31384703 Msa0205110:intron 35.0%
TGACAGGTTCTTGATGAAAT+TGG - chr2_1:31384827-31384846 Msa0205110:intron 35.0%
! AAATCACGTGTTTTCACACA+AGG - chr2_1:31384919-31384938 Msa0205110:intron 35.0%
CGAATAGTTAGTTCATAGCA+TGG - chr2_1:31384952-31384971 Msa0205110:intron 35.0%
GCCACTTGAAACATTTAGTT+AGG + chr2_1:31385536-31385555 None:intergenic 35.0%
! GTTGAATTTTATCTGTACCG+CGG - chr2_1:31385605-31385624 Msa0205110:CDS 35.0%
! TTGAATTTTATCTGTACCGC+GGG - chr2_1:31385606-31385625 Msa0205110:CDS 35.0%
TAACATCCTCTGCTTGGATT+AGG - chr2_1:31379348-31379367 Msa0205110:intron 40.0%
AAGAAGAAAACCACACCCAA+AGG - chr2_1:31379401-31379420 Msa0205110:three_prime_UTR 40.0%
AGAGAGATGAACGAACCTTT+GGG + chr2_1:31379419-31379438 None:intergenic 40.0%
AAGAGAGATGAACGAACCTT+TGG + chr2_1:31379420-31379439 None:intergenic 40.0%
GAAATGTCTGTTGCAACTAG+AGG - chr2_1:31379577-31379596 Msa0205110:three_prime_UTR 40.0%
! AGCTCATCTGATTTGAGCTA+AGG - chr2_1:31380046-31380065 Msa0205110:intron 40.0%
! GCTCATCTGATTTGAGCTAA+GGG - chr2_1:31380047-31380066 Msa0205110:intron 40.0%
TTAATGGAGTTGGAGATCCT+TGG - chr2_1:31380070-31380089 Msa0205110:intron 40.0%
! AGCTTTATGGCACTCACAAA+TGG - chr2_1:31380215-31380234 Msa0205110:intron 40.0%
TTTACATTTACCTCCCTCCA+AGG - chr2_1:31380239-31380258 Msa0205110:intron 40.0%
TTACATTTACCTCCCTCCAA+GGG - chr2_1:31380240-31380259 Msa0205110:intron 40.0%
!! TGGACAAGTATTGGATACAG+AGG + chr2_1:31380290-31380309 None:intergenic 40.0%
! TTGGTCTAGTGGACAAGTAT+TGG + chr2_1:31380299-31380318 None:intergenic 40.0%
GACTTTGGTAGAAGTTAGCA+AGG - chr2_1:31380384-31380403 Msa0205110:intron 40.0%
AGAGATAGCATCACTTCAGA+TGG - chr2_1:31380465-31380484 Msa0205110:intron 40.0%
CAAGGCAGTTAAGCACTAAA+AGG + chr2_1:31380547-31380566 None:intergenic 40.0%
! TTCTTTTCCTGCAGTAGACA+AGG + chr2_1:31380565-31380584 None:intergenic 40.0%
ACTGCAGGAAAAGAAGTTAG+TGG - chr2_1:31380570-31380589 Msa0205110:intron 40.0%
AGTGGCAGAGATTAAAAGAG+AGG - chr2_1:31380588-31380607 Msa0205110:intron 40.0%
AGAGGCAAAAACTGGAAATG+AGG - chr2_1:31380606-31380625 Msa0205110:intron 40.0%
TTATTCCTCAACTAGAGAGG+GGG + chr2_1:31380775-31380794 None:intergenic 40.0%
CTTATTCCTCAACTAGAGAG+GGG + chr2_1:31380776-31380795 None:intergenic 40.0%
CACTTATTCCTCAACTAGAG+AGG + chr2_1:31380778-31380797 None:intergenic 40.0%
! GTGTATGTTTGATTCGTCAG+TGG - chr2_1:31380795-31380814 Msa0205110:intron 40.0%
GTATGACAAAATCACGGTGT+GGG + chr2_1:31380841-31380860 None:intergenic 40.0%
!! TTGGTAGGTTTGTTGGTTAG+AGG + chr2_1:31380944-31380963 None:intergenic 40.0%
AACCTACCAATTGATGTCCA+AGG - chr2_1:31380954-31380973 Msa0205110:intron 40.0%
ACCTACCAATTGATGTCCAA+GGG - chr2_1:31380955-31380974 Msa0205110:intron 40.0%
TTACTAAATGGGTGTTCCCT+TGG + chr2_1:31380974-31380993 None:intergenic 40.0%
ACGACGCTTCATCAAAGAAA+AGG + chr2_1:31381011-31381030 None:intergenic 40.0%
TCAGTTTCTGACTACTTCAG+AGG - chr2_1:31381229-31381248 Msa0205110:intron 40.0%
ATGCAGTATCAGTCATCGAT+TGG + chr2_1:31381301-31381320 None:intergenic 40.0%
!! GGGAATTTTCTAGAAGTGGT+GGG + chr2_1:31381338-31381357 None:intergenic 40.0%
!! TAGGGGGAATTTTCTAGAAG+TGG + chr2_1:31381342-31381361 None:intergenic 40.0%
TCTGATTACTAAACGGGTAG+GGG + chr2_1:31381359-31381378 None:intergenic 40.0%
GTCTGATTACTAAACGGGTA+GGG + chr2_1:31381360-31381379 None:intergenic 40.0%
! AGATTATGAGCATTGCCAGT+AGG - chr2_1:31381444-31381463 Msa0205110:intron 40.0%
AGAAGCTCCGTATTTAGTTG+AGG - chr2_1:31381493-31381512 Msa0205110:intron 40.0%
TGGATGGCCTCAACTAAATA+CGG + chr2_1:31381503-31381522 None:intergenic 40.0%
GAATTTCAAGCTATGGCTCA+AGG + chr2_1:31381558-31381577 None:intergenic 40.0%
GTTCAGTTTCTTACTACTCC+AGG - chr2_1:31381605-31381624 Msa0205110:CDS 40.0%
ATGCAGTATTAGTCACCGAT+TGG + chr2_1:31381677-31381696 None:intergenic 40.0%
!! GGGAATTTTCTAGAAGTGGT+GGG + chr2_1:31381338-31381357 None:intergenic 40.0%
!! AGGGAATTTTCTAGAAGTGG+TGG + chr2_1:31381721-31381740 None:intergenic 40.0%
! GCCAAGAGTACAAGCAATAA+AGG + chr2_1:31381778-31381797 None:intergenic 40.0%
!! GTTTGCTTTGGGAAATGAAG+AGG - chr2_1:31381911-31381930 Msa0205110:intron 40.0%
TATGTTGAGACGTCTGTTGA+AGG + chr2_1:31382018-31382037 None:intergenic 40.0%
GAATAAGAGGTCCTTAGTTG+AGG + chr2_1:31382134-31382153 None:intergenic 40.0%
AGGGATTCTGCTTGAATAAG+AGG + chr2_1:31382147-31382166 None:intergenic 40.0%
AAACATTTACACCAGTGGCA+AGG + chr2_1:31382293-31382312 None:intergenic 40.0%
TGTGTGTATCCGAACTGATT+TGG - chr2_1:31382620-31382639 Msa0205110:intron 40.0%
ACAGGCTTCTACTAAAATCC+TGG - chr2_1:31382693-31382712 Msa0205110:intron 40.0%
CTTCTACTAAAATCCTGGCT+CGG - chr2_1:31382698-31382717 Msa0205110:intron 40.0%
! CCTGCAGATTAGTTATCTGT+TGG + chr2_1:31382741-31382760 None:intergenic 40.0%
CCAACAGATAACTAATCTGC+AGG - chr2_1:31382738-31382757 Msa0205110:intron 40.0%
CAAGCACTTCAATCTCTACA+GGG - chr2_1:31382891-31382910 Msa0205110:intron 40.0%
TTCAATCTCTACAGGGATGA+AGG - chr2_1:31382898-31382917 Msa0205110:intron 40.0%
TCAATCTCTACAGGGATGAA+GGG - chr2_1:31382899-31382918 Msa0205110:intron 40.0%
AGCAATGGTGGCAATGAATA+AGG - chr2_1:31382931-31382950 Msa0205110:intron 40.0%
GGAAATGTTTGACAGAAGAC+TGG - chr2_1:31383152-31383171 Msa0205110:intron 40.0%
TCATTGTGGTGTGCAATCTT+TGG + chr2_1:31383565-31383584 None:intergenic 40.0%
TTTCGCCAGTATTAGACTGT+TGG - chr2_1:31383621-31383640 Msa0205110:intron 40.0%
TTCGCCAGTATTAGACTGTT+GGG - chr2_1:31383622-31383641 Msa0205110:intron 40.0%
AGTTCCCAACAGTCTAATAC+TGG + chr2_1:31383629-31383648 None:intergenic 40.0%
CACTATCGTCTTCAGTATAG+TGG + chr2_1:31383934-31383953 None:intergenic 40.0%
CACTATACTGAAGACGATAG+TGG - chr2_1:31383932-31383951 Msa0205110:intron 40.0%
! GGTTTTTGCACTGGACAAAT+TGG - chr2_1:31383959-31383978 Msa0205110:intron 40.0%
AAACACAGAAGGAGAACTTG+AGG - chr2_1:31384010-31384029 Msa0205110:intron 40.0%
TCAGAATATTGCTGTGACGT+GGG - chr2_1:31384171-31384190 Msa0205110:intron 40.0%
GGAAACTTGTCACAGCAATT+GGG - chr2_1:31384226-31384245 Msa0205110:intron 40.0%
GAAACTTGTCACAGCAATTG+GGG - chr2_1:31384227-31384246 Msa0205110:intron 40.0%
TACTCTGTTGTACTCAACCA+CGG - chr2_1:31384349-31384368 Msa0205110:intron 40.0%
! CTGCTTTAAGTACTACCATG+AGG + chr2_1:31384477-31384496 None:intergenic 40.0%
CTCATGGTAGTACTTAAAGC+AGG - chr2_1:31384475-31384494 Msa0205110:intron 40.0%
CATCATCTCAAACTGCATCT+CGG + chr2_1:31384559-31384578 None:intergenic 40.0%
ATCAGAAGAACTCACTAACC+AGG - chr2_1:31384711-31384730 Msa0205110:intron 40.0%
GGTTCTTGATGAAATTGGAG+TGG - chr2_1:31384832-31384851 Msa0205110:intron 40.0%
ATTGGGCTCAAAACAAACCT+GGG + chr2_1:31384867-31384886 None:intergenic 40.0%
TATTGGGCTCAAAACAAACC+TGG + chr2_1:31384868-31384887 None:intergenic 40.0%
CCAACTACTCGAAAACTCTT+AGG + chr2_1:31385000-31385019 None:intergenic 40.0%
!!! CCTAAGAGTTTTCGAGTAGT+TGG - chr2_1:31384997-31385016 Msa0205110:intron 40.0%
TAGTTATCTTCTGCTCCGAA+AGG - chr2_1:31385105-31385124 Msa0205110:intron 40.0%
TGGCAGTCAATAAGCTACTT+CGG - chr2_1:31385552-31385571 Msa0205110:intron 40.0%
AGTCAATAAGCTACTTCGGT+CGG - chr2_1:31385556-31385575 Msa0205110:intron 40.0%
AGCGTGTGCTGTGTATTGTT+GGG + chr2_1:31379193-31379212 None:intergenic 45.0%
AAGAGAGAGGAGAGACCTTT+GGG + chr2_1:31379223-31379242 None:intergenic 45.0%
TAAGAGAGAGGAGAGACCTT+TGG + chr2_1:31379224-31379243 None:intergenic 45.0%
CTACTGTAACATCCTCTGCT+TGG - chr2_1:31379342-31379361 Msa0205110:intron 45.0%
CCAAAACCTAATCCAAGCAG+AGG + chr2_1:31379357-31379376 None:intergenic 45.0%
!! CCTCTGCTTGGATTAGGTTT+TGG - chr2_1:31379354-31379373 Msa0205110:intron 45.0%
CATCGACACTTCACACATTG+AGG - chr2_1:31379844-31379863 Msa0205110:intron 45.0%
GAGCTAAGGGTTAATGGAGT+TGG - chr2_1:31380060-31380079 Msa0205110:intron 45.0%
GTATTGGATACAGAGGTTCC+AGG + chr2_1:31380283-31380302 None:intergenic 45.0%
TGTCCACTAGACCAAACCAT+TGG - chr2_1:31380304-31380323 Msa0205110:CDS 45.0%
!! ACTCCAATGGTTTGGTCTAG+TGG + chr2_1:31380310-31380329 None:intergenic 45.0%
GATAGCATCACTTCAGATGG+AGG - chr2_1:31380468-31380487 Msa0205110:intron 45.0%
TTAACTGCCTTGTCTACTGC+AGG - chr2_1:31380555-31380574 Msa0205110:intron 45.0%
CGTATGACAAAATCACGGTG+TGG + chr2_1:31380842-31380861 None:intergenic 45.0%
CGGTGCGTATGACAAAATCA+CGG + chr2_1:31380847-31380866 None:intergenic 45.0%
TCCCTTGGACATCAATTGGT+AGG + chr2_1:31380959-31380978 None:intergenic 45.0%
GTGTTCCCTTGGACATCAAT+TGG + chr2_1:31380963-31380982 None:intergenic 45.0%
! CAAGCGCGTATAAGAGTATG+AGG - chr2_1:31381268-31381287 Msa0205110:intron 45.0%
! CAGTATCAGTCATCGATTGG+AGG + chr2_1:31381298-31381317 None:intergenic 45.0%
!! GGGGAATTTTCTAGAAGTGG+TGG + chr2_1:31381339-31381358 None:intergenic 45.0%
CTGATTACTAAACGGGTAGG+GGG + chr2_1:31381358-31381377 None:intergenic 45.0%
GGTCTGATTACTAAACGGGT+AGG + chr2_1:31381361-31381380 None:intergenic 45.0%
! TTATGAGCATTGCCAGTAGG+TGG - chr2_1:31381447-31381466 Msa0205110:intron 45.0%
! CATTGCCAGTAGGTGGTTTT+TGG - chr2_1:31381454-31381473 Msa0205110:intron 45.0%
TGTCTAGAGACTTTGTTGCC+TGG + chr2_1:31381626-31381645 None:intergenic 45.0%
GTATGAGGTTGACCTCCAAT+CGG - chr2_1:31381283-31381302 Msa0205110:intron 45.0%
! CAGTATTAGTCACCGATTGG+AGG + chr2_1:31381674-31381693 None:intergenic 45.0%
GGAGTTGCTTATTCGCAACA+AGG + chr2_1:31381937-31381956 None:intergenic 45.0%
AGTCGTACAGTCTTCGTTTG+TGG - chr2_1:31382042-31382061 Msa0205110:intron 45.0%
AACCATCTCTCGTGCTTGAT+TGG + chr2_1:31382074-31382093 None:intergenic 45.0%
TGCACACCATTCCTCAACTA+AGG - chr2_1:31382120-31382139 Msa0205110:intron 45.0%
AGAGGTCCTTAGTTGAGGAA+TGG + chr2_1:31382129-31382148 None:intergenic 45.0%
AATCATTATGCTAGGCGGAG+AGG - chr2_1:31382368-31382387 Msa0205110:intron 45.0%
ATCATTATGCTAGGCGGAGA+GGG - chr2_1:31382369-31382388 Msa0205110:intron 45.0%
TACTGTAGTATCTGCCCAAC+TGG - chr2_1:31382572-31382591 Msa0205110:intron 45.0%
GCAAGCACTTCAATCTCTAC+AGG - chr2_1:31382890-31382909 Msa0205110:intron 45.0%
CATTGCCACCATTGCTTTAG+TGG + chr2_1:31382927-31382946 None:intergenic 45.0%
GTTTATGACCCAAAGGGTAG+AGG - chr2_1:31383045-31383064 Msa0205110:intron 45.0%
CAAGACAACCTCTACCCTTT+GGG + chr2_1:31383056-31383075 None:intergenic 45.0%
TCAAGACAACCTCTACCCTT+TGG + chr2_1:31383057-31383076 None:intergenic 45.0%
ATCTTCTCAGCAAATGGCAC+CGG - chr2_1:31383363-31383382 Msa0205110:intron 45.0%
ATCACTTTAGCCTGCTTTGC+CGG + chr2_1:31383385-31383404 None:intergenic 45.0%
!!! CCAGTTGTGCTGATTGCTTT+TGG + chr2_1:31383417-31383436 None:intergenic 45.0%
CCAAAAGCAATCAGCACAAC+TGG - chr2_1:31383414-31383433 Msa0205110:intron 45.0%
ATCAGCACAACTGGACATGA+CGG - chr2_1:31383423-31383442 Msa0205110:intron 45.0%
ATACTGGCGAAACACTGGAT+TGG + chr2_1:31383613-31383632 None:intergenic 45.0%
GTCTAATACTGGCGAAACAC+TGG + chr2_1:31383618-31383637 None:intergenic 45.0%
GCATTGTATGATCCACCCAA+AGG - chr2_1:31383675-31383694 Msa0205110:intron 45.0%
TTGTATGATCCACCCAAAGG+TGG - chr2_1:31383678-31383697 Msa0205110:intron 45.0%
ATCGTCTTCAGTATAGTGGC+AGG + chr2_1:31383930-31383949 None:intergenic 45.0%
ACAGAAGGAGAACTTGAGGT+TGG - chr2_1:31384014-31384033 Msa0205110:intron 45.0%
GAAGATTGTGGGCAATAGAG+AGG - chr2_1:31384056-31384075 Msa0205110:intron 45.0%
GTCAGAATATTGCTGTGACG+TGG - chr2_1:31384170-31384189 Msa0205110:intron 45.0%
! CTGTGACAAGTTTCCCCTTT+TGG + chr2_1:31384221-31384240 None:intergenic 45.0%
GGGAAACTTGTCACAGCAAT+TGG - chr2_1:31384225-31384244 Msa0205110:intron 45.0%
GAGGTCACAGGTTCAATTTG+TGG - chr2_1:31384267-31384286 Msa0205110:intron 45.0%
ACCAGCTTCTAGCAAAAGCA+AGG - chr2_1:31384291-31384310 Msa0205110:intron 45.0%
!! ACCTTGCTTTTGCTAGAAGC+TGG + chr2_1:31384295-31384314 None:intergenic 45.0%
GGTTGAGTACAACAGAGTAC+TGG + chr2_1:31384348-31384367 None:intergenic 45.0%
AGTACTACCATGAGGCTATC+AGG + chr2_1:31384469-31384488 None:intergenic 45.0%
TATCTTCTGCTCCGAAAGGT+CGG - chr2_1:31385109-31385128 Msa0205110:intron 45.0%
CTTGAAGCAATCCGACCTTT+CGG + chr2_1:31385123-31385142 None:intergenic 45.0%
ATGCTGAAAATGCTGCTCCA+AGG - chr2_1:31385145-31385164 Msa0205110:intron 45.0%
TCTGCATGCACAAAGCAACA+TGG + chr2_1:31385245-31385264 None:intergenic 45.0%
! GTTGCTTTGTGCATGCAGAT+CGG - chr2_1:31385246-31385265 Msa0205110:intron 45.0%
!! TTTGTAATTAAAAAAAAAAA+AGG + chr2_1:31379262-31379281 None:intergenic 5.0%
!!! ATATTATATTCATTATTTTA+AGG + chr2_1:31379803-31379822 None:intergenic 5.0%
GAGCGTGTGCTGTGTATTGT+TGG + chr2_1:31379194-31379213 None:intergenic 50.0%
GATGAACGAACCTTTGGGTG+TGG + chr2_1:31379414-31379433 None:intergenic 50.0%
TTGAGGTGTGTCCGACACAT+TGG - chr2_1:31379861-31379880 Msa0205110:CDS 50.0%
GGAGATCCTTGGTTCAAACG+CGG - chr2_1:31380081-31380100 Msa0205110:intron 50.0%
GAGATCCTTGGTTCAAACGC+GGG - chr2_1:31380082-31380101 Msa0205110:intron 50.0%
TTTGTCCCGCGTTTGAACCA+AGG + chr2_1:31380090-31380109 None:intergenic 50.0%
GGATTTCAAGCTATGGCTCG+AGG + chr2_1:31381180-31381199 None:intergenic 50.0%
GCACACCAAAAACCACCTAC+TGG + chr2_1:31381462-31381481 None:intergenic 50.0%
CACCAATCAAGCACGAGAGA+TGG - chr2_1:31382069-31382088 Msa0205110:CDS 50.0%
ACCAGTGGCAAGGATGAACA+CGG + chr2_1:31382283-31382302 None:intergenic 50.0%
!! GAAGGGTGCCACTAAAGCAA+TGG - chr2_1:31382916-31382935 Msa0205110:intron 50.0%
AAGTAAGCACCACCTTTGGG+TGG + chr2_1:31383690-31383709 None:intergenic 50.0%
!! ACTGAAGACGATAGTGGGTG+TGG - chr2_1:31383938-31383957 Msa0205110:intron 50.0%
! AGTGGGTGTGGTTTTTGCAC+TGG - chr2_1:31383950-31383969 Msa0205110:intron 50.0%
TGGAGTGGATATTGCATCCC+AGG - chr2_1:31384847-31384866 Msa0205110:intron 50.0%
CGAAAGGTCGGATTGCTTCA+AGG - chr2_1:31385121-31385140 Msa0205110:intron 50.0%
GCATGCACAAAGCAACATGG+AGG + chr2_1:31385242-31385261 None:intergenic 50.0%
AGGAGAGACCTTTGGGCTTG+GGG + chr2_1:31379216-31379235 None:intergenic 55.0%
GAGGAGAGACCTTTGGGCTT+GGG + chr2_1:31379217-31379236 None:intergenic 55.0%
AGAGGAGAGACCTTTGGGCT+TGG + chr2_1:31379218-31379237 None:intergenic 55.0%
TCCTCAACTAGAGAGGGGGT+GGG + chr2_1:31380771-31380790 None:intergenic 55.0%
TTCCTCAACTAGAGAGGGGG+TGG + chr2_1:31380772-31380791 None:intergenic 55.0%
ACCGTGTTCATCCTTGCCAC+TGG - chr2_1:31382279-31382298 Msa0205110:CDS 55.0%
AGGGAAGTCGTGCACAGATC+AGG - chr2_1:31382758-31382777 Msa0205110:intron 55.0%
GGGAAGTCGTGCACAGATCA+GGG - chr2_1:31382759-31382778 Msa0205110:intron 55.0%
GGAAGTCGTGCACAGATCAG+GGG - chr2_1:31382760-31382779 Msa0205110:intron 55.0%
GGGTGTAGCAACTCACACAC+AGG - chr2_1:31382780-31382799 Msa0205110:intron 55.0%
!! GGGTGCCACTAAAGCAATGG+TGG - chr2_1:31382919-31382938 Msa0205110:intron 55.0%
TGGGGTTGCACCATGTGACT+AGG - chr2_1:31384245-31384264 Msa0205110:intron 55.0%
GGTTGCACCATGTGACTAGG+AGG - chr2_1:31384248-31384267 Msa0205110:intron 55.0%
CCTGTGACCTCCTAGTCACA+TGG + chr2_1:31384258-31384277 None:intergenic 55.0%
CCATGTGACTAGGAGGTCAC+AGG - chr2_1:31384255-31384274 Msa0205110:intron 55.0%
TGTTGTACTCAACCACGGCG+AGG - chr2_1:31384354-31384373 Msa0205110:intron 55.0%
ATAAAGCTCTTGCCTCGCCG+TGG + chr2_1:31384369-31384388 None:intergenic 55.0%
CTACCATGAGGCTATCAGGC+AGG + chr2_1:31384465-31384484 None:intergenic 55.0%
ACCCACCCCCTCTCTAGTTG+AGG - chr2_1:31380767-31380786 Msa0205110:intron 60.0%
!! TCCTGGCTCGGCAGCTAGTT+AGG - chr2_1:31382710-31382729 Msa0205110:intron 60.0%
ACCTAACTAGCTGCCGAGCC+AGG + chr2_1:31382714-31382733 None:intergenic 60.0%
!! GCAAATGGCACCGGCAAAGC+AGG - chr2_1:31383372-31383391 Msa0205110:intron 60.0%
GTGCCTGCCTGATAGCCTCA+TGG - chr2_1:31384459-31384478 Msa0205110:intron 60.0%
ACACCTTATGCAGGTGCCCG+CGG + chr2_1:31385625-31385644 None:intergenic 60.0%
CACACGCTCCCCAAGCCCAA+AGG - chr2_1:31379205-31379224 Msa0205110:three_prime_UTR 65.0%
!! CCTCCCTCCAAGGGCACTAG+CGG - chr2_1:31380249-31380268 Msa0205110:intron 65.0%
!! CTCCCTCCAAGGGCACTAGC+GGG - chr2_1:31380250-31380269 Msa0205110:intron 65.0%
!! TCCCTCCAAGGGCACTAGCG+GGG - chr2_1:31380251-31380270 Msa0205110:intron 65.0%
GTACCGCGGGCACCTGCATA+AGG - chr2_1:31385619-31385638 Msa0205110:exon 65.0%
CCGCTAGTGCCCTTGGAGGG+AGG + chr2_1:31380252-31380271 None:intergenic 70.0%
GCCCCGCTAGTGCCCTTGGA+GGG + chr2_1:31380255-31380274 None:intergenic 70.0%
AGCCCCGCTAGTGCCCTTGG+AGG + chr2_1:31380256-31380275 None:intergenic 70.0%
TCGAGCCCCGCTAGTGCCCT+TGG + chr2_1:31380259-31380278 None:intergenic 70.0%
GCACTAGCGGGGCTCGAACC+TGG - chr2_1:31380262-31380281 Msa0205110:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 31379180 31385836 31379180 ID=Msa0205110;Name=Msa0205110
chr2_1 mRNA 31379180 31385836 31379180 ID=Msa0205110-mRNA-1;Parent=Msa0205110;Name=Msa0205110-mRNA-1;_AED=0.15;_eAED=0.15;_QI=113|1|1|1|0.83|0.69|13|412|216
chr2_1 exon 31379180 31379264 31379180 ID=Msa0205110-mRNA-1:exon:11055;Parent=Msa0205110-mRNA-1
chr2_1 exon 31379365 31379752 31379365 ID=Msa0205110-mRNA-1:exon:11054;Parent=Msa0205110-mRNA-1
chr2_1 exon 31379850 31379908 31379850 ID=Msa0205110-mRNA-1:exon:11053;Parent=Msa0205110-mRNA-1
chr2_1 exon 31380148 31380183 31380148 ID=Msa0205110-mRNA-1:exon:11052;Parent=Msa0205110-mRNA-1
chr2_1 exon 31380284 31380364 31380284 ID=Msa0205110-mRNA-1:exon:11051;Parent=Msa0205110-mRNA-1
chr2_1 exon 31381572 31381643 31381572 ID=Msa0205110-mRNA-1:exon:11050;Parent=Msa0205110-mRNA-1
chr2_1 exon 31382064 31382135 31382064 ID=Msa0205110-mRNA-1:exon:11049;Parent=Msa0205110-mRNA-1
chr2_1 exon 31382215 31382319 31382215 ID=Msa0205110-mRNA-1:exon:11048;Parent=Msa0205110-mRNA-1
chr2_1 exon 31384389 31384439 31384389 ID=Msa0205110-mRNA-1:exon:11047;Parent=Msa0205110-mRNA-1
chr2_1 exon 31384527 31384561 31384527 ID=Msa0205110-mRNA-1:exon:11046;Parent=Msa0205110-mRNA-1
chr2_1 exon 31385418 31385462 31385418 ID=Msa0205110-mRNA-1:exon:11045;Parent=Msa0205110-mRNA-1
chr2_1 exon 31385594 31385693 31385594 ID=Msa0205110-mRNA-1:exon:11044;Parent=Msa0205110-mRNA-1
chr2_1 exon 31385790 31385836 31385790 ID=Msa0205110-mRNA-1:exon:11043;Parent=Msa0205110-mRNA-1
chr2_1 five_prime_UTR 31385790 31385836 31385790 ID=Msa0205110-mRNA-1:five_prime_utr;Parent=Msa0205110-mRNA-1
chr2_1 five_prime_UTR 31385628 31385693 31385628 ID=Msa0205110-mRNA-1:five_prime_utr;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31385594 31385627 31385594 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31385418 31385462 31385418 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31384527 31384561 31384527 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31384389 31384439 31384389 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31382215 31382319 31382215 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31382064 31382135 31382064 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31381572 31381643 31381572 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31380284 31380364 31380284 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31380148 31380183 31380148 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31379850 31379908 31379850 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 CDS 31379692 31379752 31379692 ID=Msa0205110-mRNA-1:cds;Parent=Msa0205110-mRNA-1
chr2_1 three_prime_UTR 31379365 31379691 31379365 ID=Msa0205110-mRNA-1:three_prime_utr;Parent=Msa0205110-mRNA-1
chr2_1 three_prime_UTR 31379180 31379264 31379180 ID=Msa0205110-mRNA-1:three_prime_utr;Parent=Msa0205110-mRNA-1
Gene Sequence

>Msa0205110

ATGAACATCTTCAAGAAGAAAACCACACCCAAAGAAGCTCTGCGACAAAGTAAAAGAGAAATGTCTGTTGCAACTAGAGGAATTGAAAGAGAGATAGCATCACTTCAGATGGAGGAAAAGAAGTTAGTGGCAGAGATTAAAAGAGAGGCAAAAACTGGAAATGAGGCTTCTACTAAAATCCTGGCTCGGCAGCTAGTTAGGTTACGCCAACAGATAACTAATCTGCAGGGAAGTCGTGCACAGATCAGGGGTGTAGCAACTCACACACAGGCATTATATGCAAGCACTTCAATCTCTACAGGGATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGCAAATGGCACCGGCAAAGCAGGCTAAAGTGATTCAAGAATTCCAAAAGCAATCAGCACAACTGGACATGACGATTGAGATGATGTCAGAATCTATTGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAATCAGAAGAACTCACTAACCAGGTTCTTGATGAAATTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCGAAAGGTCGGATTGCTTCAAGGAATGCTGAAAATGCTGCTCCAAGATCGGAATCACAAGATGTTGAAGAACTTGAAAAGAGATTGGCTTCTCTTCGAAGAATATAA

Protein sequence

>Msa0205110

MNIFKKKTTPKEALRQSKREMSVATRGIEREIASLQMEEKKLVAEIKREAKTGNEASTKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQAKVIQEFQKQSAQLDMTIEMMSESIDETLDKDEAEEESEELTNQVLDEIGVDIASQLSSAPKGRIASRNAENAAPRSESQDVEELEKRLASLRRI*