Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0326460 | Msa0750650 | 0.807292 | 5.427716e-50 | -8.615850e-47 |
| Msa0326460 | Msa0936300 | 0.806437 | 8.228486e-50 | -8.615850e-47 |
| Msa0326460 | Msa1430410 | 0.948257 | 1.350085e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGATCTTAAATCCTTTA+AGG | 0.154933 | 2_4:+36349970 | Msa0326460:CDS |
| GAAATTATATGTTACCTTAA+AGG | 0.158934 | 2_4:-36349984 | None:intergenic |
| TCCTTCCTGATTATTGCTTT+TGG | 0.239235 | 2_4:-36352043 | None:intergenic |
| AGAAGAAGAAGTAATCAATT+TGG | 0.277514 | 2_4:+36349919 | Msa0326460:five_prime_UTR |
| AGTGGTGAGAAAAGGGAAAA+TGG | 0.278092 | 2_4:-36349723 | None:intergenic |
| AAAGCTCCTACACCAACATT+AGG | 0.347170 | 2_4:+36349864 | Msa0326460:five_prime_UTR |
| AAGGATTTAAGATCCATCTT+TGG | 0.355406 | 2_4:-36349965 | None:intergenic |
| GAAGAAGAAGTAATCAATTT+GGG | 0.363060 | 2_4:+36349920 | Msa0326460:five_prime_UTR |
| AGTAATCAATTTGGGTATGT+TGG | 0.388725 | 2_4:+36349928 | Msa0326460:exon |
| TGTCGAGAGAGAAGATGAAA+GGG | 0.388822 | 2_4:+36349767 | Msa0326460:five_prime_UTR |
| ATGGACCAAAAGCAATAATC+AGG | 0.422893 | 2_4:+36352038 | Msa0326460:CDS |
| TTATGAAGTGGGAAGGCTTA+AGG | 0.429941 | 2_4:-36349829 | None:intergenic |
| TCTACTGTAGTGGTGAGAAA+AGG | 0.444555 | 2_4:-36349731 | None:intergenic |
| CAATAATCAGGAAGGAAGTC+TGG | 0.445314 | 2_4:+36352050 | Msa0326460:CDS |
| AAGCTCCTACACCAACATTA+GGG | 0.460989 | 2_4:+36349865 | Msa0326460:five_prime_UTR |
| GTGGTGAGAAAAGGGAAAAT+GGG | 0.461366 | 2_4:-36349722 | None:intergenic |
| CTACTGTAGTGGTGAGAAAA+GGG | 0.466765 | 2_4:-36349730 | None:intergenic |
| TTTCTGTCTAACCCTAATGT+TGG | 0.471425 | 2_4:-36349876 | None:intergenic |
| TTGTCGAGAGAGAAGATGAA+AGG | 0.497904 | 2_4:+36349766 | Msa0326460:five_prime_UTR |
| ACAAACAATTGAAGATATGA+AGG | 0.499490 | 2_4:+36352083 | Msa0326460:CDS |
| AATCAATTTGGGTATGTTGG+AGG | 0.501098 | 2_4:+36349931 | Msa0326460:exon |
| CTATGGGGAAATTATGAAGT+GGG | 0.502485 | 2_4:-36349840 | None:intergenic |
| GGTTGAAGAAGAACCAAAGA+TGG | 0.535814 | 2_4:+36349952 | Msa0326460:CDS |
| AGGGAAAATGGGTATAGAGT+TGG | 0.546792 | 2_4:-36349711 | None:intergenic |
| GTCGAGAGAGAAGATGAAAG+GGG | 0.569334 | 2_4:+36349768 | Msa0326460:five_prime_UTR |
| TCTATGGGGAAATTATGAAG+TGG | 0.604070 | 2_4:-36349841 | None:intergenic |
| GGGGAAATTATGAAGTGGGA+AGG | 0.605746 | 2_4:-36349836 | None:intergenic |
| TCTAACCCTAATGTTGGTGT+AGG | 0.608709 | 2_4:-36349870 | None:intergenic |
| GCTATGCAATGAAATGATAG+AGG | 0.613912 | 2_4:-36349799 | None:intergenic |
| ACCAAAAGCAATAATCAGGA+AGG | 0.620971 | 2_4:+36352042 | Msa0326460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATAATTGAGATATTT+AGG | + | chr2_4:36350051-36350070 | Msa0326460:intron | 10.0% |
| !! | TAATATAATTGAGATATTTA+GGG | + | chr2_4:36350052-36350071 | Msa0326460:intron | 10.0% |
| !!! | AATGAAATCAAATAATTTTG+TGG | - | chr2_4:36350588-36350607 | None:intergenic | 15.0% |
| !! | TTAAATGATGATTTAATAGA+TGG | + | chr2_4:36350746-36350765 | Msa0326460:intron | 15.0% |
| !! | CAAAAAAAAAAAAAAAGGAA+TGG | - | chr2_4:36350803-36350822 | None:intergenic | 15.0% |
| !!! | TTCCTTTTTTTTTTTTTTTG+AGG | + | chr2_4:36350803-36350822 | Msa0326460:intron | 15.0% |
| !!! | TCCTTTTTTTTTTTTTTTGA+GGG | + | chr2_4:36350804-36350823 | Msa0326460:intron | 15.0% |
| !!! | TTTTTAATGAAGTCTTTTAA+AGG | + | chr2_4:36351651-36351670 | Msa0326460:intron | 15.0% |
| !!! | TTTTAATGAAGTCTTTTAAA+GGG | + | chr2_4:36351652-36351671 | Msa0326460:intron | 15.0% |
| !! | AATAAAGTTTAAACTGAAAT+TGG | + | chr2_4:36351727-36351746 | Msa0326460:intron | 15.0% |
| !! | ATAAAGTTTAAACTGAAATT+GGG | + | chr2_4:36351728-36351747 | Msa0326460:intron | 15.0% |
| !! | GAAATTATATGTTACCTTAA+AGG | - | chr2_4:36349987-36350006 | None:intergenic | 20.0% |
| !!! | ATTTTGCATTTGATTTTGAT+AGG | + | chr2_4:36350132-36350151 | Msa0326460:intron | 20.0% |
| !!! | ACTGATTTGAACTTTAATTT+TGG | + | chr2_4:36350188-36350207 | Msa0326460:intron | 20.0% |
| !! | TTTAGATATAGATAGAAAGA+AGG | + | chr2_4:36350235-36350254 | Msa0326460:intron | 20.0% |
| !! | AAATTCAAGGTAATTAATTC+AGG | - | chr2_4:36350509-36350528 | None:intergenic | 20.0% |
| !!! | AATTACCTTGAATTTTGATA+TGG | + | chr2_4:36350514-36350533 | Msa0326460:intron | 20.0% |
| !!! | ATTACCTTGAATTTTGATAT+GGG | + | chr2_4:36350515-36350534 | Msa0326460:intron | 20.0% |
| !!! | TAATTTTGTGGATTTTACTT+GGG | - | chr2_4:36350576-36350595 | None:intergenic | 20.0% |
| !!! | ATAATTTTGTGGATTTTACT+TGG | - | chr2_4:36350577-36350596 | None:intergenic | 20.0% |
| !!! | TATTTCTAAACTATTCAAAG+TGG | + | chr2_4:36350667-36350686 | Msa0326460:intron | 20.0% |
| !! | TCCCTCAAAAAAAAAAAAAA+AGG | - | chr2_4:36350808-36350827 | None:intergenic | 20.0% |
| !! | TCCTTATTAAAGAGTTATAA+TGG | + | chr2_4:36350896-36350915 | Msa0326460:intron | 20.0% |
| !!! | CATTCTTAGTTTCAAAATTT+TGG | - | chr2_4:36351993-36352012 | None:intergenic | 20.0% |
| ! | AGAAGAAGAAGTAATCAATT+TGG | + | chr2_4:36349919-36349938 | Msa0326460:five_prime_UTR | 25.0% |
| ! | GAAGAAGAAGTAATCAATTT+GGG | + | chr2_4:36349920-36349939 | Msa0326460:five_prime_UTR | 25.0% |
| !!! | AGTTGATTTGATTGATTGTT+TGG | + | chr2_4:36350087-36350106 | Msa0326460:intron | 25.0% |
| ! | ATTTGATTGATTGTTTGGTT+TGG | + | chr2_4:36350092-36350111 | Msa0326460:intron | 25.0% |
| !! | GGTGACTTTTAATAACTTAT+TGG | + | chr2_4:36350314-36350333 | Msa0326460:intron | 25.0% |
| ! | CACGACAAAAATAACTAAAA+CGG | - | chr2_4:36350776-36350795 | None:intergenic | 25.0% |
| ! | GCCATTATAACTCTTTAATA+AGG | - | chr2_4:36350900-36350919 | None:intergenic | 25.0% |
| !!! | CATAATAGTTTTGTGATGTA+TGG | + | chr2_4:36350919-36350938 | Msa0326460:intron | 25.0% |
| !!! | GTTTTTGAGATTTAATGAGA+AGG | + | chr2_4:36351391-36351410 | Msa0326460:intron | 25.0% |
| !! | AGTTTTACTCACTATGTATT+TGG | + | chr2_4:36351521-36351540 | Msa0326460:intron | 25.0% |
| !! | GTTTTACTCACTATGTATTT+GGG | + | chr2_4:36351522-36351541 | Msa0326460:intron | 25.0% |
| !! | TTTTACTCACTATGTATTTG+GGG | + | chr2_4:36351523-36351542 | Msa0326460:intron | 25.0% |
| AGTAATCAATTTGGGTATGT+TGG | + | chr2_4:36349928-36349947 | Msa0326460:exon | 30.0% | |
| ! | AAGGATTTAAGATCCATCTT+TGG | - | chr2_4:36349968-36349987 | None:intergenic | 30.0% |
| GATGGATCTTAAATCCTTTA+AGG | + | chr2_4:36349970-36349989 | Msa0326460:CDS | 30.0% | |
| ! | ATGTTTGTGCAGAAATTTTC+AGG | - | chr2_4:36350286-36350305 | None:intergenic | 30.0% |
| ATTGGCATGTGATATTCATA+TGG | + | chr2_4:36350332-36350351 | Msa0326460:intron | 30.0% | |
| TTGGCATGTGATATTCATAT+GGG | + | chr2_4:36350333-36350352 | Msa0326460:intron | 30.0% | |
| !! | TGCATTAGTCTTATGTTCAT+TGG | + | chr2_4:36350465-36350484 | Msa0326460:intron | 30.0% |
| TGTTCCCATATCAAAATTCA+AGG | - | chr2_4:36350522-36350541 | None:intergenic | 30.0% | |
| ! | AATTGTCTTTGTTTGTGAAC+TGG | + | chr2_4:36350546-36350565 | Msa0326460:intron | 30.0% |
| CTTTCTATAATCATTGCAAG+AGG | + | chr2_4:36350702-36350721 | Msa0326460:intron | 30.0% | |
| !!! | ATAGTTTTGTGATGTATGGT+TGG | + | chr2_4:36350923-36350942 | Msa0326460:intron | 30.0% |
| ! | GATGTATGGTTGGTTATTAA+AGG | + | chr2_4:36350933-36350952 | Msa0326460:intron | 30.0% |
| TGGTTATTAAAGGTTGAAGA+AGG | + | chr2_4:36350943-36350962 | Msa0326460:intron | 30.0% | |
| ! | ACTTTTCTCATGTCATTGAA+CGG | - | chr2_4:36351004-36351023 | None:intergenic | 30.0% |
| TATTAAGATTTACCCTTGCA+AGG | + | chr2_4:36351164-36351183 | Msa0326460:intron | 30.0% | |
| !!! | TTCATAGTTTTAACCTCTTC+TGG | - | chr2_4:36351266-36351285 | None:intergenic | 30.0% |
| TCATTAAAAACTCTAGACTC+TGG | - | chr2_4:36351641-36351660 | None:intergenic | 30.0% | |
| CTTCTCTTACTAAAAGAAGT+GGG | + | chr2_4:36351823-36351842 | Msa0326460:intron | 30.0% | |
| TTCTCTTACTAAAAGAAGTG+GGG | + | chr2_4:36351824-36351843 | Msa0326460:intron | 30.0% | |
| TGCCAATTCATAATTCAGAA+TGG | + | chr2_4:36352019-36352038 | Msa0326460:intron | 30.0% | |
| GTCCATTCTGAATTATGAAT+TGG | - | chr2_4:36352024-36352043 | None:intergenic | 30.0% | |
| GCTATGCAATGAAATGATAG+AGG | - | chr2_4:36349802-36349821 | None:intergenic | 35.0% | |
| CTATGGGGAAATTATGAAGT+GGG | - | chr2_4:36349843-36349862 | None:intergenic | 35.0% | |
| TCTATGGGGAAATTATGAAG+TGG | - | chr2_4:36349844-36349863 | None:intergenic | 35.0% | |
| TTTCTGTCTAACCCTAATGT+TGG | - | chr2_4:36349879-36349898 | None:intergenic | 35.0% | |
| AATCAATTTGGGTATGTTGG+AGG | + | chr2_4:36349931-36349950 | Msa0326460:exon | 35.0% | |
| TTCTCTTCTTAAACCTCTTC+AGG | + | chr2_4:36350004-36350023 | Msa0326460:intron | 35.0% | |
| TCTCTTCTTAAACCTCTTCA+GGG | + | chr2_4:36350005-36350024 | Msa0326460:intron | 35.0% | |
| AGGGTGTGCTTATAAATTGT+TGG | + | chr2_4:36350024-36350043 | Msa0326460:intron | 35.0% | |
| GAAGATAGTCAACTTGCATA+TGG | - | chr2_4:36350375-36350394 | None:intergenic | 35.0% | |
| CTATTCAAAGTGGTGAATCA+TGG | + | chr2_4:36350677-36350696 | Msa0326460:intron | 35.0% | |
| TAACCATTCCTAAAGAACAG+AGG | + | chr2_4:36350834-36350853 | Msa0326460:intron | 35.0% | |
| ! | AAACCTCTGTTCTTTAGGAA+TGG | - | chr2_4:36350840-36350859 | None:intergenic | 35.0% |
| TTCTCAAACCTCTGTTCTTT+AGG | - | chr2_4:36350845-36350864 | None:intergenic | 35.0% | |
| AACACGTTTAATAGCGTGAA+TGG | + | chr2_4:36351042-36351061 | Msa0326460:intron | 35.0% | |
| TTAACCTCTTCTGGTAAGAT+TGG | - | chr2_4:36351257-36351276 | None:intergenic | 35.0% | |
| TAAAACGTTTCCAACCATGT+CGG | - | chr2_4:36351471-36351490 | None:intergenic | 35.0% | |
| GCTTCTCTTACTAAAAGAAG+TGG | + | chr2_4:36351822-36351841 | Msa0326460:intron | 35.0% | |
| !!! | ACATTTTTGAAACCCTCACT+CGG | - | chr2_4:36351872-36351891 | None:intergenic | 35.0% |
| AACAATTAAGCCATCTGATG+TGG | + | chr2_4:36351898-36351917 | Msa0326460:intron | 35.0% | |
| GCTAATGTGGATAAGGAATT+AGG | + | chr2_4:36351966-36351985 | Msa0326460:intron | 35.0% | |
| ATGGACCAAAAGCAATAATC+AGG | + | chr2_4:36352038-36352057 | Msa0326460:CDS | 35.0% | |
| ACCAAAAGCAATAATCAGGA+AGG | + | chr2_4:36352042-36352061 | Msa0326460:CDS | 35.0% | |
| ! | TCCTTCCTGATTATTGCTTT+TGG | - | chr2_4:36352046-36352065 | None:intergenic | 35.0% |
| GTGGTGAGAAAAGGGAAAAT+GGG | - | chr2_4:36349725-36349744 | None:intergenic | 40.0% | |
| AGTGGTGAGAAAAGGGAAAA+TGG | - | chr2_4:36349726-36349745 | None:intergenic | 40.0% | |
| CTACTGTAGTGGTGAGAAAA+GGG | - | chr2_4:36349733-36349752 | None:intergenic | 40.0% | |
| TCTACTGTAGTGGTGAGAAA+AGG | - | chr2_4:36349734-36349753 | None:intergenic | 40.0% | |
| TTGTCGAGAGAGAAGATGAA+AGG | + | chr2_4:36349766-36349785 | Msa0326460:five_prime_UTR | 40.0% | |
| TGTCGAGAGAGAAGATGAAA+GGG | + | chr2_4:36349767-36349786 | Msa0326460:five_prime_UTR | 40.0% | |
| TTATGAAGTGGGAAGGCTTA+AGG | - | chr2_4:36349832-36349851 | None:intergenic | 40.0% | |
| ! | TGGTGTAGGAGCTTTTCTAT+GGG | - | chr2_4:36349859-36349878 | None:intergenic | 40.0% |
| ! | TTGGTGTAGGAGCTTTTCTA+TGG | - | chr2_4:36349860-36349879 | None:intergenic | 40.0% |
| AAAGCTCCTACACCAACATT+AGG | + | chr2_4:36349864-36349883 | Msa0326460:five_prime_UTR | 40.0% | |
| AAGCTCCTACACCAACATTA+GGG | + | chr2_4:36349865-36349884 | Msa0326460:five_prime_UTR | 40.0% | |
| TCTAACCCTAATGTTGGTGT+AGG | - | chr2_4:36349873-36349892 | None:intergenic | 40.0% | |
| GGTTGAAGAAGAACCAAAGA+TGG | + | chr2_4:36349952-36349971 | Msa0326460:CDS | 40.0% | |
| TTTATAAGCACACCCTGAAG+AGG | - | chr2_4:36350020-36350039 | None:intergenic | 40.0% | |
| TCTGCACAAACATGTTCAGT+TGG | + | chr2_4:36350293-36350312 | Msa0326460:intron | 40.0% | |
| AGTGCTCCGTCTATATATGA+CGG | + | chr2_4:36351189-36351208 | Msa0326460:intron | 40.0% | |
| CATGTCCCGTCATATATAGA+CGG | - | chr2_4:36351198-36351217 | None:intergenic | 40.0% | |
| ATCTCCAATCTTACCAGAAG+AGG | + | chr2_4:36351250-36351269 | Msa0326460:intron | 40.0% | |
| CACACTTAGTGACTTAGACA+AGG | + | chr2_4:36351335-36351354 | Msa0326460:intron | 40.0% | |
| ACTTAGTGACTTAGACAAGG+AGG | + | chr2_4:36351338-36351357 | Msa0326460:intron | 40.0% | |
| CTAATGTGCACTTCTATACC+TGG | - | chr2_4:36351557-36351576 | None:intergenic | 40.0% | |
| TGTGCATGCAAATGATCTGA+TGG | + | chr2_4:36351768-36351787 | Msa0326460:intron | 40.0% | |
| ! | GCAAATGATCTGATGGATGA+TGG | + | chr2_4:36351775-36351794 | Msa0326460:intron | 40.0% |
| AATTAAGCCATCTGATGTGG+AGG | + | chr2_4:36351901-36351920 | Msa0326460:intron | 40.0% | |
| ATTAAGCCATCTGATGTGGA+GGG | + | chr2_4:36351902-36351921 | Msa0326460:intron | 40.0% | |
| CAATAATCAGGAAGGAAGTC+TGG | + | chr2_4:36352050-36352069 | Msa0326460:CDS | 40.0% | |
| TCTCTCTCTCTCTACTGTAG+TGG | - | chr2_4:36349744-36349763 | None:intergenic | 45.0% | |
| GTCGAGAGAGAAGATGAAAG+GGG | + | chr2_4:36349768-36349787 | Msa0326460:five_prime_UTR | 45.0% | |
| GGGGAAATTATGAAGTGGGA+AGG | - | chr2_4:36349839-36349858 | None:intergenic | 45.0% | |
| ! | GGTGTAGGAGCTTTTCTATG+GGG | - | chr2_4:36349858-36349877 | None:intergenic | 45.0% |
| GCATATGGACACGATGCAAT+TGG | - | chr2_4:36350360-36350379 | None:intergenic | 45.0% | |
| GTGCTCCGTCTATATATGAC+GGG | + | chr2_4:36351190-36351209 | Msa0326460:intron | 45.0% | |
| ACATGTAAGCGAGGGTAAAC+AGG | + | chr2_4:36351213-36351232 | Msa0326460:intron | 45.0% | |
| CATGTAAGCGAGGGTAAACA+GGG | + | chr2_4:36351214-36351233 | Msa0326460:intron | 45.0% | |
| ! | GTATTTGGGGTTACGTTTCC+AGG | + | chr2_4:36351536-36351555 | Msa0326460:intron | 45.0% |
| TCAGCCGTAAATCGTTCAGT+CGG | + | chr2_4:36351602-36351621 | Msa0326460:intron | 45.0% | |
| TCTAGACTCTGGACGTGATT+CGG | - | chr2_4:36351630-36351649 | None:intergenic | 45.0% | |
| CACTCGGAGCAAGATTCTAA+TGG | - | chr2_4:36351856-36351875 | None:intergenic | 45.0% | |
| TTAGAATCTTGCTCCGAGTG+AGG | + | chr2_4:36351856-36351875 | Msa0326460:intron | 45.0% | |
| TAGAATCTTGCTCCGAGTGA+GGG | + | chr2_4:36351857-36351876 | Msa0326460:intron | 45.0% | |
| ! | TATGACGGGACATGTAAGCG+AGG | + | chr2_4:36351204-36351223 | Msa0326460:intron | 50.0% |
| ! | ATGACGGGACATGTAAGCGA+GGG | + | chr2_4:36351205-36351224 | Msa0326460:intron | 50.0% |
| CCATGTCGGTGTGCTAAACA+TGG | - | chr2_4:36351457-36351476 | None:intergenic | 50.0% | |
| CCATGTTTAGCACACCGACA+TGG | + | chr2_4:36351454-36351473 | Msa0326460:intron | 50.0% | |
| GTTTAGCACACCGACATGGT+TGG | + | chr2_4:36351458-36351477 | Msa0326460:intron | 50.0% | |
| GGCTCCGACTGAACGATTTA+CGG | - | chr2_4:36351609-36351628 | None:intergenic | 50.0% | |
| CTTTCTCCCTCCACATCAGA+TGG | - | chr2_4:36351911-36351930 | None:intergenic | 50.0% | |
| ! | ACATTAGCCTCCCCAAACTC+GGG | - | chr2_4:36351954-36351973 | None:intergenic | 50.0% |
| ! | CACATTAGCCTCCCCAAACT+CGG | - | chr2_4:36351955-36351974 | None:intergenic | 50.0% |
| TGGGGAGGCTAATGTGGATA+AGG | + | chr2_4:36351959-36351978 | Msa0326460:intron | 50.0% | |
| ! | ACGGAGCACTCACCTTGCAA+GGG | - | chr2_4:36351179-36351198 | None:intergenic | 55.0% |
| TTAGTCCCGACTCCCGAGTT+TGG | + | chr2_4:36351939-36351958 | Msa0326460:intron | 55.0% | |
| TAGTCCCGACTCCCGAGTTT+GGG | + | chr2_4:36351940-36351959 | Msa0326460:intron | 55.0% | |
| CGAGTTTGGGGAGGCTAATG+TGG | + | chr2_4:36351953-36351972 | Msa0326460:intron | 55.0% | |
| ! | GACGGAGCACTCACCTTGCA+AGG | - | chr2_4:36351180-36351199 | None:intergenic | 60.0% |
| CGGGAGTCGGGACTAACTAC+TGG | - | chr2_4:36351935-36351954 | None:intergenic | 60.0% | |
| AGTCCCGACTCCCGAGTTTG+GGG | + | chr2_4:36351941-36351960 | Msa0326460:intron | 60.0% | |
| CCTCCCCAAACTCGGGAGTC+GGG | - | chr2_4:36351947-36351966 | None:intergenic | 65.0% | |
| GCCTCCCCAAACTCGGGAGT+CGG | - | chr2_4:36351948-36351967 | None:intergenic | 65.0% | |
| CCCGACTCCCGAGTTTGGGG+AGG | + | chr2_4:36351944-36351963 | Msa0326460:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 36349712 | 36352102 | 36349712 | ID=Msa0326460;Name=Msa0326460 |
| chr2_4 | mRNA | 36349712 | 36352102 | 36349712 | ID=Msa0326460-mRNA-1;Parent=Msa0326460;Name=Msa0326460-mRNA-1;_AED=0.38;_eAED=0.50;_QI=232|0|0.5|1|0|0.5|2|0|37 |
| chr2_4 | exon | 36349712 | 36349991 | 36349712 | ID=Msa0326460-mRNA-1:exon:11177;Parent=Msa0326460-mRNA-1 |
| chr2_4 | exon | 36352037 | 36352102 | 36352037 | ID=Msa0326460-mRNA-1:exon:11178;Parent=Msa0326460-mRNA-1 |
| chr2_4 | five_prime_UTR | 36349712 | 36349943 | 36349712 | ID=Msa0326460-mRNA-1:five_prime_utr;Parent=Msa0326460-mRNA-1 |
| chr2_4 | CDS | 36349944 | 36349991 | 36349944 | ID=Msa0326460-mRNA-1:cds;Parent=Msa0326460-mRNA-1 |
| chr2_4 | CDS | 36352037 | 36352102 | 36352037 | ID=Msa0326460-mRNA-1:cds;Parent=Msa0326460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
