AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0326920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326920 MtrunA17_Chr2g0308321 95.572 542 21 2 1 542 1 539 0.0 956
Msa0326920 MtrunA17_Chr4g0061651 61.771 497 148 11 51 542 11 470 0.0 527
Msa0326920 MtrunA17_Chr5g0420051 39.623 371 191 11 1 355 1 354 4.31e-62 210
Msa0326920 MtrunA17_Chr3g0132091 34.204 383 178 15 125 492 18 341 5.30e-40 148
Msa0326920 MtrunA17_Chr8g0386271 57.692 130 50 2 125 249 45 174 3.42e-37 141
Msa0326920 MtrunA17_Chr7g0224821 38.168 262 113 6 169 423 72 291 4.56e-36 138
Msa0326920 MtrunA17_Chr7g0231911 60.377 106 36 2 168 267 143 248 5.96e-34 130
Msa0326920 MtrunA17_Chr7g0258471 58.929 112 44 2 165 274 133 244 6.27e-34 133
Msa0326920 MtrunA17_Chr1g0162871 62.376 101 37 1 150 249 79 179 2.31e-33 135
Msa0326920 MtrunA17_Chr8g0334671 72.368 76 21 0 174 249 187 262 7.91e-33 128
Msa0326920 MtrunA17_Chr7g0270541 51.613 124 58 2 124 247 97 218 9.21e-33 133
Msa0326920 MtrunA17_Chr2g0302791 66.279 86 27 1 172 255 137 222 1.18e-31 130
Msa0326920 MtrunA17_Chr3g0122411 47.020 151 68 3 106 249 95 240 1.23e-31 127
Msa0326920 MtrunA17_Chr2g0282521 67.500 80 26 0 174 253 64 143 2.05e-31 118
Msa0326920 MtrunA17_Chr4g0046991 67.532 77 25 0 174 250 73 149 2.68e-31 118
Msa0326920 MtrunA17_Chr1g0194121 57.009 107 41 1 146 247 114 220 4.83e-31 128
Msa0326920 MtrunA17_Chr8g0360361 68.919 74 23 0 174 247 65 138 1.62e-29 114
Msa0326920 MtrunA17_Chr8g0377421 58.667 75 31 0 173 247 131 205 2.34e-25 106
Msa0326920 MtrunA17_Chr8g0377401 58.904 73 30 0 174 246 162 234 2.23e-23 99.8
Msa0326920 MtrunA17_Chr2g0286661 46.237 93 50 0 158 250 87 179 3.29e-21 97.8
Msa0326920 MtrunA17_Chr2g0317041 68.085 47 15 0 174 220 99 145 9.13e-16 74.7
Msa0326920 MtrunA17_Chr1g0175031 68.085 47 15 0 174 220 74 120 1.19e-15 73.9
Msa0326920 MtrunA17_Chr8g0377431 45.588 68 37 0 160 227 137 204 3.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326920 AT1G69170.1 46.575 219 102 4 73 290 35 239 9.19e-50 177
Msa0326920 AT5G50570.1 40.239 251 122 9 125 357 42 282 2.20e-38 144
Msa0326920 AT5G50570.2 40.239 251 122 9 125 357 42 282 2.20e-38 144
Msa0326920 AT5G50670.1 40.239 251 122 9 125 357 42 282 2.20e-38 144
Msa0326920 AT5G50670.2 40.239 251 122 9 125 357 42 282 2.20e-38 144
Msa0326920 AT1G20980.1 55.469 128 51 3 125 247 67 193 1.40e-34 139
Msa0326920 AT2G42200.1 56.098 123 46 3 160 274 58 180 1.69e-34 134
Msa0326920 AT3G57920.1 62.857 105 38 1 146 249 30 134 1.05e-33 131
Msa0326920 AT1G27370.6 52.459 122 49 3 157 274 155 271 1.48e-33 130
Msa0326920 AT1G27370.1 52.459 122 49 3 157 274 155 271 3.50e-33 131
Msa0326920 AT1G27370.5 52.459 122 49 3 157 274 155 271 3.50e-33 131
Msa0326920 AT1G27370.3 52.459 122 49 3 157 274 155 271 3.50e-33 131
Msa0326920 AT1G27370.2 52.459 122 49 3 157 274 155 271 3.50e-33 131
Msa0326920 AT1G27370.4 52.459 122 49 3 157 274 155 271 3.50e-33 131
Msa0326920 AT1G27370.7 52.459 122 49 3 157 274 155 271 3.50e-33 131
Msa0326920 AT2G47070.1 59.813 107 34 2 144 247 79 179 6.62e-33 134
Msa0326920 AT5G43270.3 65.854 82 28 0 170 251 165 246 7.22e-33 130
Msa0326920 AT5G43270.1 65.854 82 28 0 170 251 165 246 7.22e-33 130
Msa0326920 AT5G43270.2 65.854 82 28 0 170 251 165 246 7.22e-33 130
Msa0326920 AT1G02065.1 74.324 74 19 0 174 247 188 261 1.50e-32 127
Msa0326920 AT1G76580.3 63.265 98 30 1 158 249 92 189 1.25e-31 130
Msa0326920 AT1G76580.2 63.265 98 30 1 158 249 92 189 1.35e-31 130
Msa0326920 AT1G76580.1 63.265 98 30 1 158 249 92 189 3.09e-31 129
Msa0326920 AT3G60030.1 67.901 81 26 0 167 247 120 200 3.68e-31 129
Msa0326920 AT2G33810.1 67.568 74 24 0 174 247 54 127 7.33e-31 117
Msa0326920 AT1G27360.2 56.731 104 40 2 171 274 172 270 3.55e-30 122
Msa0326920 AT1G27360.1 56.731 104 40 2 171 274 172 270 3.55e-30 122
Msa0326920 AT1G27360.3 56.731 104 40 2 171 274 172 270 3.55e-30 122
Msa0326920 AT1G27360.4 56.731 104 40 2 171 274 172 270 3.55e-30 122
Msa0326920 AT1G53160.2 60.870 92 32 1 171 258 51 142 4.14e-30 116
Msa0326920 AT1G53160.1 60.870 92 32 1 171 258 51 142 4.14e-30 116
Msa0326920 AT3G15270.1 53.097 113 46 3 174 279 63 175 4.50e-30 116
Msa0326920 AT1G53160.3 60.870 92 32 1 171 258 51 142 5.40e-30 116
Msa0326920 AT5G18830.2 50.549 91 42 1 160 250 127 214 1.34e-21 99.4
Msa0326920 AT5G18830.3 50.549 91 42 1 160 250 127 214 1.52e-21 99.4
Msa0326920 AT5G18830.1 53.333 90 38 2 160 248 127 213 1.54e-21 99.4
Msa0326920 AT2G47070.2 76.000 50 12 0 198 247 1 50 2.68e-18 89.0
Msa0326920 AT1G02065.2 68.750 48 15 0 174 221 188 235 3.83e-17 81.6

Find 160 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTTTCATTATTATTT+AGG 0.144422 2_4:-38081857 Msa0326920:five_prime_UTR
AATGAATGTGAAAGCCATTT+TGG 0.169213 2_4:+38081809 None:intergenic
TTAGATTACATTCACTAAAT+TGG 0.174095 2_4:+38076988 None:intergenic
TTTCCTTTCCTTCAAGAAAA+TGG 0.189331 2_4:-38078319 Msa0326920:CDS
TCGATTGGCTTGAAGAATTC+TGG 0.190530 2_4:+38078086 None:intergenic
TGTATCAATGTGTGACATTC+AGG 0.241788 2_4:-38077061 Msa0326920:three_prime_UTR
TGAGGATGTGCATTTATAAT+TGG 0.243639 2_4:+38078379 None:intergenic
CCACAAGTTGGTATTCATTC+TGG 0.255651 2_4:-38080011 Msa0326920:CDS
ACTATCCAGGTTTCATTTGC+TGG 0.261393 2_4:-38080102 Msa0326920:intron
AGAACCAAAGGTTCAATCTT+AGG 0.265075 2_4:-38081416 Msa0326920:CDS
GCCAGATATTAAGTTCTTTC+CGG 0.271958 2_4:+38077235 None:intergenic
AGCTTCAGGTCTTTAAATAC+TGG 0.310334 2_4:+38076844 None:intergenic
ACCTATTGAGTTTGAATGCT+TGG 0.311089 2_4:+38081154 None:intergenic
GGGAGGTTGCTTCAGTCATA+TGG 0.315390 2_4:-38079981 Msa0326920:CDS
GCATCAGAGGCGAGCCTTGC+AGG 0.317553 2_4:-38077771 Msa0326920:CDS
AAACATGACTCATGCTATAA+TGG 0.320615 2_4:+38078017 None:intergenic
TTACTGTTTGATATTAATAT+AGG 0.332199 2_4:+38077929 None:intergenic
TCTCTTTCTGAAAATGCATT+TGG 0.333291 2_4:+38081200 None:intergenic
CCAAGTACATGGATGTAATA+AGG 0.335472 2_4:-38080958 Msa0326920:CDS
TATTGTTGTACGAAGGAAAC+AGG 0.337560 2_4:+38078347 None:intergenic
ATCCAAGGAGGCTCGAATTC+CGG 0.339302 2_4:-38078241 Msa0326920:CDS
GCTTTCTACGACGCTCATTA+TGG 0.341005 2_4:+38080033 None:intergenic
CCAACCTAAGATTGAACCTT+TGG 0.348079 2_4:+38081412 None:intergenic
TTGTCATAAACACTTCAATA+AGG 0.351623 2_4:-38077035 Msa0326920:three_prime_UTR
CGATTGGCTTGAAGAATTCT+GGG 0.354670 2_4:+38078087 None:intergenic
CCTATTGAGTTTGAATGCTT+GGG 0.355993 2_4:+38081155 None:intergenic
GGAGGTTGCTTCAGTCATAT+GGG 0.364253 2_4:-38079980 Msa0326920:CDS
CCCCATCTGCCATTTCGAAA+TGG 0.368112 2_4:+38077897 None:intergenic
CCTTATTACATCCATGTACT+TGG 0.389421 2_4:+38080958 None:intergenic
TCCGGAAAGAACTTAATATC+TGG 0.391402 2_4:-38077236 Msa0326920:three_prime_UTR
CACTTCCTAAGGAGGTATCT+TGG 0.394888 2_4:+38078203 None:intergenic
TGAGTTTGAATGCTTGGGCT+TGG 0.395759 2_4:+38081160 None:intergenic
CCTGTGCAGCTTGTTGTGAC+TGG 0.401726 2_4:-38077289 Msa0326920:three_prime_UTR
CCCATCTGCCATTTCGAAAT+GGG 0.406149 2_4:+38077898 None:intergenic
CAAAGGTTCAATCTTAGGTT+GGG 0.407849 2_4:-38081411 Msa0326920:CDS
AGCTGTCGTAAACGTCTTGC+AGG 0.408574 2_4:-38080056 Msa0326920:CDS
ATCGTGGTCCCCTTAGAAAA+TGG 0.413161 2_4:+38081056 None:intergenic
TGAAGCTGACCAATGGCGGC+TGG 0.414356 2_4:-38077158 Msa0326920:three_prime_UTR
GTCGAAGAGGGTGAGGTCTT+CGG 0.415208 2_4:-38081006 Msa0326920:CDS
CCTAAAACCGGTTCCGCCTT+CGG 0.416837 2_4:+38078417 None:intergenic
TTACATTACATTCTAGCTGT+TGG 0.416888 2_4:+38077104 None:intergenic
ATAAAAGCCGAAGGCGGAAC+CGG 0.423047 2_4:-38078424 Msa0326920:CDS
GATTATGCAGAAGAAGCTTC+AGG 0.426141 2_4:+38076830 None:intergenic
GATTTGAAGCTTGGTAGATT+TGG 0.426241 2_4:-38081104 Msa0326920:CDS
GATGGAACTCAAAGTGAAAC+AGG 0.427062 2_4:+38081966 None:intergenic
TTACGTAAAATGCTTTCAAC+AGG 0.432048 2_4:-38077712 Msa0326920:intron
ATCCGGAATTCGAGCCTCCT+TGG 0.439031 2_4:+38078239 None:intergenic
TCACTCATTGATTTGAAGCT+TGG 0.440222 2_4:-38081113 Msa0326920:CDS
TGACTGGAAATATTCGTATC+AGG 0.442828 2_4:-38077273 Msa0326920:three_prime_UTR
GATGATGATGATGTTGTTGT+TGG 0.448687 2_4:-38081263 Msa0326920:CDS
ATCAGCTGTTCAAGGATTAT+CGG 0.450349 2_4:-38078155 Msa0326920:CDS
TGACTTTACCAGTGTGTACT+TGG 0.453555 2_4:+38081917 None:intergenic
GGTATTCATTCTGGAAGAGC+TGG 0.460050 2_4:-38080002 Msa0326920:CDS
TTATTCCAAGATACCTCCTT+AGG 0.463781 2_4:-38078208 Msa0326920:CDS
CCAAAGGTTCAATCTTAGGT+TGG 0.470404 2_4:-38081412 Msa0326920:CDS
TTTAGTGATATGTTCTCAAA+GGG 0.471354 2_4:+38081731 None:intergenic
GAAACATACTCTTTATCTTG+TGG 0.473319 2_4:+38081458 None:intergenic
ATTGAAGTCTTCACTTCCTA+AGG 0.476688 2_4:+38078192 None:intergenic
GAAACAGAATCAGCTGTTCA+AGG 0.477684 2_4:-38078163 Msa0326920:CDS
AGAAATGTGGAAATAGTAAC+TGG 0.480981 2_4:-38078456 Msa0326920:CDS
CCCAAGCATTCAAACTCAAT+AGG 0.481003 2_4:-38081155 Msa0326920:CDS
AATGGTCGTGCCATCTTCAC+AGG 0.486457 2_4:+38077832 None:intergenic
TATTGCGTCCCAGCCGCCAT+TGG 0.487032 2_4:+38077149 None:intergenic
TACTTGGAAGTAGTGGGAAT+GGG 0.488921 2_4:+38081933 None:intergenic
ATGAGTCATGTTTCTGAAAG+TGG 0.489233 2_4:-38078007 Msa0326920:CDS
GACCGTCTTTCCTGTGAAGA+TGG 0.490853 2_4:-38077842 Msa0326920:CDS
CTGAAAGTGGCGTCTCGGAT+AGG 0.491794 2_4:-38077994 Msa0326920:CDS
TGAAATCGCCCATTTCGAAA+TGG 0.493806 2_4:-38077906 Msa0326920:CDS
TCAGCTGTTCAAGGATTATC+GGG 0.494261 2_4:-38078154 Msa0326920:CDS
GCATGGGAATTCCTGTCGAT+TGG 0.495766 2_4:+38078071 None:intergenic
CAGTGTGTACTTGGAAGTAG+TGG 0.500544 2_4:+38081926 None:intergenic
CTGATGTTAGCATGGTTCCT+TGG 0.502694 2_4:+38078527 None:intergenic
ACTTCTAAAGTAATAGTGAA+TGG 0.503268 2_4:-38080876 Msa0326920:CDS
CCTCACCGGGGAGTATCTCT+TGG 0.503402 2_4:+38078491 None:intergenic
AACTCAATAGGTGACACTAA+TGG 0.504070 2_4:-38081143 Msa0326920:CDS
AATGGTGCTACATCTGCTAC+TGG 0.508879 2_4:-38078301 Msa0326920:CDS
ATAATTGGAATAGAAGAAAG+AGG 0.509513 2_4:+38078394 None:intergenic
ATGATTCTTCCTGCTCTCTA+CGG 0.510890 2_4:-38077736 Msa0326920:CDS
TCCGTCTGAGTTAAATCATA+CGG 0.511466 2_4:-38077969 Msa0326920:CDS
CCCATTTCGAAATGGCAGAT+GGG 0.511484 2_4:-38077898 Msa0326920:CDS
TTACGTAATCCGTAGAGAGC+AGG 0.520716 2_4:+38077727 None:intergenic
GGCAGTAAGCAATCTGAGAA+TGG 0.521246 2_4:+38080979 None:intergenic
GAAAATGACAACAATAATCA+AGG 0.521619 2_4:-38081347 Msa0326920:CDS
TTGCTGGCTGAATTTGATGA+TGG 0.522089 2_4:-38080086 Msa0326920:CDS
GTTTAGTGATATGTTCTCAA+AGG 0.522350 2_4:+38081730 None:intergenic
AGAAGAAAGAGGCCTAAAAC+CGG 0.523177 2_4:+38078405 None:intergenic
TTGGAATAATGATTGTGATC+CGG 0.528558 2_4:+38078222 None:intergenic
CTATAATGGCTATGGCTGCT+CGG 0.529046 2_4:+38078031 None:intergenic
CGACAGTTGAAGCAAGTCAA+TGG 0.529505 2_4:+38077814 None:intergenic
CGACGCCGTCGAAGAGGGTG+AGG 0.530255 2_4:-38081013 Msa0326920:CDS
TTGATCTTGTGATGGAGTCA+TGG 0.531002 2_4:-38081490 Msa0326920:exon
ATTGCTTACTGCCAAGTACA+TGG 0.531998 2_4:-38080969 Msa0326920:CDS
AATAACTAAATGACCAGGCA+TGG 0.532105 2_4:+38078054 None:intergenic
CCAGTCACAACAAGCTGCAC+AGG 0.532430 2_4:+38077289 None:intergenic
GCCCATTTCGAAATGGCAGA+TGG 0.532890 2_4:-38077899 Msa0326920:CDS
CAGGATAAGAACTTAGTGTC+CGG 0.532999 2_4:-38077254 Msa0326920:three_prime_UTR
TCGACAGGAATTCCCATGCC+TGG 0.536060 2_4:-38078067 Msa0326920:CDS
CCATTTCGAAATGGCAGATG+GGG 0.536154 2_4:-38077897 Msa0326920:CDS
TCAGAAGATAAGACCTCACC+GGG 0.542752 2_4:+38078478 None:intergenic
GAGGTTGCTTCAGTCATATG+GGG 0.543950 2_4:-38079979 Msa0326920:CDS
TTCGAGCCTCCTTGGATAGG+AGG 0.548698 2_4:+38078247 None:intergenic
GACTCATGCTATAATGGCTA+TGG 0.554681 2_4:+38078023 None:intergenic
TGGGGTCTTTGATCTTGTGA+TGG 0.556099 2_4:-38081498 Msa0326920:exon
CGTTGACAAAATCCGACCCC+TGG 0.557627 2_4:+38077870 None:intergenic
TATTCTTGCAAGAATTGAAG+TGG 0.557994 2_4:-38081518 Msa0326920:five_prime_UTR
GTACTTGGAAGTAGTGGGAA+TGG 0.558108 2_4:+38081932 None:intergenic
AGATTTGGTGATCATAGAGA+TGG 0.560484 2_4:-38081089 Msa0326920:CDS
GTATTCATTCTGGAAGAGCT+GGG 0.561734 2_4:-38080001 Msa0326920:CDS
GATCGTCGACGCCGTCGAAG+AGG 0.561825 2_4:-38081019 Msa0326920:CDS
GAAGCTGACCAATGGCGGCT+GGG 0.561893 2_4:-38077157 Msa0326920:three_prime_UTR
GAATTCGAGCCTCCTTGGAT+AGG 0.563220 2_4:+38078244 None:intergenic
TGTTTCTGAAAGTGGCGTCT+CGG 0.565635 2_4:-38077999 Msa0326920:CDS
AGATGAAGCAGAGAACTGAA+TGG 0.567859 2_4:+38081765 None:intergenic
AATTGTTTATTGTTGTACGA+AGG 0.567910 2_4:+38078340 None:intergenic
TCCGTATGATTTAACTCAGA+CGG 0.569364 2_4:+38077968 None:intergenic
TTGGATATATGTAGATAGAG+AGG 0.569382 2_4:+38077123 None:intergenic
AATTCTTCAAGCCAATCGAC+AGG 0.569495 2_4:-38078082 Msa0326920:CDS
GAAGTCTTCACTTCCTAAGG+AGG 0.571303 2_4:+38078195 None:intergenic
CTTACAGATAGTAGATTCCA+AGG 0.572899 2_4:-38078544 Msa0326920:intron
CTCAGAAGATAAGACCTCAC+CGG 0.577587 2_4:+38078477 None:intergenic
ATATGCCAAGAGATACTCCC+CGG 0.578163 2_4:-38078496 Msa0326920:CDS
CTCGGAATAACTAAATGACC+AGG 0.578215 2_4:+38078049 None:intergenic
GGAAACAGGGTTCTTGAATG+AGG 0.578570 2_4:+38078361 None:intergenic
ATTCTTGCAAGAATTGAAGT+GGG 0.583081 2_4:-38081517 Msa0326920:five_prime_UTR
TGCCATCTTCACAGGAAAGA+CGG 0.587669 2_4:+38077840 None:intergenic
ATAGTACCTCAAAAGACTGA+AGG 0.593679 2_4:+38081538 None:intergenic
ATCGTCGACGCCGTCGAAGA+GGG 0.596849 2_4:-38081018 Msa0326920:CDS
AGTCAATATCCTCCTATCCA+AGG 0.597117 2_4:-38078256 Msa0326920:CDS
AAAAGATGCTGATGTTAGCA+TGG 0.597201 2_4:+38078519 None:intergenic
TAGTGAATGGAATTGAACAA+AGG 0.600144 2_4:-38080863 Msa0326920:CDS
TAGTACCTCAAAAGACTGAA+GGG 0.601383 2_4:+38081539 None:intergenic
TTCAGCGTGTTGAGCATCAG+AGG 0.601537 2_4:-38077784 Msa0326920:CDS
CGGCTCGTGAAGCTGACCAA+TGG 0.603959 2_4:-38077165 Msa0326920:three_prime_UTR
GAAGACCTCACCCTCTTCGA+CGG 0.607299 2_4:+38081008 None:intergenic
CGTCGTAGAAAGCCACAAGT+TGG 0.607871 2_4:-38080023 Msa0326920:CDS
TGGATATATGTAGATAGAGA+GGG 0.609573 2_4:+38077124 None:intergenic
CCAGAATGAATACCAACTTG+TGG 0.611115 2_4:+38080011 None:intergenic
TCTGAGTTAAATCATACGGA+TGG 0.611214 2_4:-38077965 Msa0326920:CDS
ATAACTAAATGACCAGGCAT+GGG 0.613150 2_4:+38078055 None:intergenic
CTCGTGAAGCTGACCAATGG+CGG 0.613637 2_4:-38077162 Msa0326920:three_prime_UTR
GTCTTATCTTCTGAGAAATG+TGG 0.623862 2_4:-38078469 Msa0326920:CDS
GTTGTAAAGATTATCACAAG+AGG 0.629804 2_4:-38080926 Msa0326920:CDS
TTCTTGCAAGAATTGAAGTG+GGG 0.641448 2_4:-38081516 Msa0326920:five_prime_UTR
ACACTTGGTAGTAGAACCAA+AGG 0.641812 2_4:-38081428 Msa0326920:CDS
TATGTTTCAAATGACACACT+TGG 0.649632 2_4:-38081443 Msa0326920:CDS
TGCAGACCTATAAAAGCCGA+AGG 0.654610 2_4:-38078433 Msa0326920:CDS
GGATTATCGGGAGTATCAGA+CGG 0.658305 2_4:-38078142 Msa0326920:CDS
CACTACTTCCAAGTACACAC+TGG 0.659390 2_4:-38081925 Msa0326920:five_prime_UTR
ATTGTTGTACGAAGGAAACA+GGG 0.661617 2_4:+38078348 None:intergenic
TCCAGACGACGACAAAATCG+TGG 0.669160 2_4:+38081040 None:intergenic
TGAAGCAGAGAACTGAATGG+AGG 0.673241 2_4:+38081768 None:intergenic
AGTGTGTACTTGGAAGTAGT+GGG 0.679813 2_4:+38081927 None:intergenic
CCAAGAGATACTCCCCGGTG+AGG 0.681967 2_4:-38078491 Msa0326920:CDS
GGATGTAATAAGGATTTGAG+TGG 0.689862 2_4:-38080948 Msa0326920:CDS
CAATATCCTCCTATCCAAGG+AGG 0.696180 2_4:-38078253 Msa0326920:CDS
TTCATTCTGGAAGAGCTGGG+AGG 0.705305 2_4:-38079998 Msa0326920:CDS
AGACCTATAAAAGCCGAAGG+CGG 0.722914 2_4:-38078430 Msa0326920:CDS
AGGTTGCTTCAGTCATATGG+GGG 0.727655 2_4:-38079978 Msa0326920:intron
TTATCGGGAGTATCAGACGG+TGG 0.745082 2_4:-38078139 Msa0326920:CDS
CAGAAGATAAGACCTCACCG+GGG 0.863209 2_4:+38078479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTCTTTCATTATTATTT+AGG - chr2_4:38076958-38076977 Msa0326920:three_prime_UTR 15.0%
!! AAAAAAAAAAAATGTCAGAA+GGG + chr2_4:38077133-38077152 None:intergenic 15.0%
!! TAAAAAAAAAAAATGTCAGA+AGG + chr2_4:38077134-38077153 None:intergenic 15.0%
!! AAAAAACACAAAATTAGTTA+TGG - chr2_4:38078078-38078097 Msa0326920:CDS 15.0%
!! AAATAGGAATATTCATAAAA+TGG + chr2_4:38078419-38078438 None:intergenic 15.0%
!!! AAACAAAAAGATTCATTTTA+TGG - chr2_4:38079723-38079742 Msa0326920:intron 15.0%
!! GCTTTATAATATTAATAATC+AGG + chr2_4:38080118-38080137 None:intergenic 15.0%
!!! AAAAAAAAAGTCATTTTGAA+AGG + chr2_4:38080140-38080159 None:intergenic 15.0%
!! TTTAATATTCAAAACCATAT+TGG - chr2_4:38080171-38080190 Msa0326920:intron 15.0%
!! TTACTGTTTGATATTAATAT+AGG + chr2_4:38080889-38080908 None:intergenic 15.0%
!! GAAATGAAAATTTATTTATG+TGG - chr2_4:38081403-38081422 Msa0326920:CDS 15.0%
!!! TACTTTTCTTTTTTCCAAAA+TGG - chr2_4:38076992-38077011 Msa0326920:three_prime_UTR 20.0%
!!! ATGTATAGTTCTTTTTTTGA+AGG - chr2_4:38077247-38077266 Msa0326920:three_prime_UTR 20.0%
!!! TGTTTTTTCCATTTTAGAAA+AGG + chr2_4:38078395-38078414 None:intergenic 20.0%
!! ACTATAATCAACAGAAAAAT+AGG + chr2_4:38078435-38078454 None:intergenic 20.0%
!! AGTTGAAAATTAGAGTATAA+TGG - chr2_4:38079159-38079178 Msa0326920:intron 20.0%
!! TTAAGAACAAAGTGAAAATT+GGG + chr2_4:38079274-38079293 None:intergenic 20.0%
!! ATTAAGAACAAAGTGAAAAT+TGG + chr2_4:38079275-38079294 None:intergenic 20.0%
!! AAGAGAAAATTTGTAACAAA+TGG + chr2_4:38079546-38079565 None:intergenic 20.0%
!! TTAATAATCAGGAAAGTAAA+TGG + chr2_4:38080107-38080126 None:intergenic 20.0%
!! TAATTTGAAAACATGAAACA+TGG + chr2_4:38081291-38081310 None:intergenic 20.0%
!! TTAGATTACATTCACTAAAT+TGG + chr2_4:38081830-38081849 None:intergenic 20.0%
! TTTAGTGATATGTTCTCAAA+GGG + chr2_4:38077087-38077106 None:intergenic 25.0%
!!! TCTCAATCATCAATCTTTTT+TGG - chr2_4:38077170-38077189 Msa0326920:three_prime_UTR 25.0%
!!! TCATTTTCTATGTTTTGTTG+AGG + chr2_4:38077456-38077475 None:intergenic 25.0%
! GAAAATGACAACAATAATCA+AGG - chr2_4:38077468-38077487 Msa0326920:intron 25.0%
!! AATTGATACACCATTTTCTA+AGG - chr2_4:38077749-38077768 Msa0326920:CDS 25.0%
!! ATTGATACACCATTTTCTAA+GGG - chr2_4:38077750-38077769 Msa0326920:CDS 25.0%
!!! ACTTCTAAAGTAATAGTGAA+TGG - chr2_4:38077939-38077958 Msa0326920:CDS 25.0%
!!! ATGTTTTGTTTCACATCTTT+TGG - chr2_4:38078017-38078036 Msa0326920:CDS 25.0%
!!! TTGCAAAAAATTTAAGTTGC+TGG - chr2_4:38078144-38078163 Msa0326920:CDS 25.0%
! AGTCCAAATTGATCAATATA+TGG - chr2_4:38078316-38078335 Msa0326920:CDS 25.0%
! AGACCATATATTGATCAATT+TGG + chr2_4:38078322-38078341 None:intergenic 25.0%
! AATTGATCAATATATGGTCT+TGG - chr2_4:38078322-38078341 Msa0326920:CDS 25.0%
!!! ATAATAGATTCAGTCGTTTT+CGG - chr2_4:38078360-38078379 Msa0326920:CDS 25.0%
!!! TACTACTTCCTTTTCTAAAA+TGG - chr2_4:38078384-38078403 Msa0326920:CDS 25.0%
!! TGGCTAAAATTTTACTTTAG+AGG + chr2_4:38078594-38078613 None:intergenic 25.0%
! CAAGCAGATAAAGTAAAATT+TGG + chr2_4:38078614-38078633 None:intergenic 25.0%
!! AATTTTACTTTATCTGCTTG+AGG - chr2_4:38078614-38078633 Msa0326920:intron 25.0%
! AAATCCACTAAAAAGTAGTT+AGG + chr2_4:38078918-38078937 None:intergenic 25.0%
! TAAATATCGAGCTTGAAATT+TGG - chr2_4:38079053-38079072 Msa0326920:intron 25.0%
! AAATATCGAGCTTGAAATTT+GGG - chr2_4:38079054-38079073 Msa0326920:intron 25.0%
! AGATAATGATATCATCTACT+TGG - chr2_4:38079208-38079227 Msa0326920:intron 25.0%
!! TTTACAATTTTCCACAAAGA+TGG - chr2_4:38079339-38079358 Msa0326920:intron 25.0%
! AAACTGAATTACGAATACTT+TGG + chr2_4:38079381-38079400 None:intergenic 25.0%
!! TTGAATTCTGATTGATTCTA+TGG - chr2_4:38079491-38079510 Msa0326920:intron 25.0%
! AAATTATACTAGAGAGTTTG+AGG - chr2_4:38079935-38079954 Msa0326920:intron 25.0%
! ATTCAAAACCATATTGGTAA+AGG - chr2_4:38080177-38080196 Msa0326920:intron 25.0%
! TATGAAAACCTTTACCAATA+TGG + chr2_4:38080188-38080207 None:intergenic 25.0%
! ATAATTGGAATAGAAGAAAG+AGG + chr2_4:38080424-38080443 None:intergenic 25.0%
! AATTGTTTATTGTTGTACGA+AGG + chr2_4:38080478-38080497 None:intergenic 25.0%
!!! GAAGAATAAATCTTTGAAGT+CGG - chr2_4:38081347-38081366 Msa0326920:CDS 25.0%
! AAATGTTGTGAGTGATTTAA+TGG + chr2_4:38081466-38081485 None:intergenic 25.0%
! TTGTCATAAACACTTCAATA+AGG - chr2_4:38081780-38081799 Msa0326920:five_prime_UTR 25.0%
!!! ATTTTGATGAATGTTGATTC+TGG - chr2_4:38081869-38081888 Msa0326920:five_prime_UTR 25.0%
! AATGAATGTGAAAGCCATTT+TGG + chr2_4:38077009-38077028 None:intergenic 30.0%
GTTTAGTGATATGTTCTCAA+AGG + chr2_4:38077088-38077107 None:intergenic 30.0%
TATTCTTGCAAGAATTGAAG+TGG - chr2_4:38077297-38077316 Msa0326920:three_prime_UTR 30.0%
ATTCTTGCAAGAATTGAAGT+GGG - chr2_4:38077298-38077317 Msa0326920:three_prime_UTR 30.0%
GAAACATACTCTTTATCTTG+TGG + chr2_4:38077360-38077379 None:intergenic 30.0%
TATGTTTCAAATGACACACT+TGG - chr2_4:38077372-38077391 Msa0326920:intron 30.0%
TTGAGGTAAAAAACTAGATG+GGG + chr2_4:38077439-38077458 None:intergenic 30.0%
GTTGAGGTAAAAAACTAGAT+GGG + chr2_4:38077440-38077459 None:intergenic 30.0%
TGTTGAGGTAAAAAACTAGA+TGG + chr2_4:38077441-38077460 None:intergenic 30.0%
! CAACAATAATCAAGGTTTTG+AGG - chr2_4:38077476-38077495 Msa0326920:intron 30.0%
!!! TAATCAAGGTTTTGAGGAAT+TGG - chr2_4:38077482-38077501 Msa0326920:intron 30.0%
!!! AATCAAGGTTTTGAGGAATT+GGG - chr2_4:38077483-38077502 Msa0326920:intron 30.0%
! CACTAGTAGTTCTTTTGTTA+TGG - chr2_4:38077587-38077606 Msa0326920:intron 30.0%
! TCTCTTTCTGAAAATGCATT+TGG + chr2_4:38077618-38077637 None:intergenic 30.0%
! TTGATACACCATTTTCTAAG+GGG - chr2_4:38077751-38077770 Msa0326920:CDS 30.0%
GTTGTAAAGATTATCACAAG+AGG - chr2_4:38077889-38077908 Msa0326920:CDS 30.0%
TAGTGAATGGAATTGAACAA+AGG - chr2_4:38077952-38077971 Msa0326920:CDS 30.0%
TTTGCAACATATGTTTGAGA+AGG + chr2_4:38078131-38078150 None:intergenic 30.0%
GAGGTTATATGTCAAGATTT+AGG + chr2_4:38078214-38078233 None:intergenic 30.0%
ATCTACATGACAAACAATTG+AGG + chr2_4:38078236-38078255 None:intergenic 30.0%
TACCAAATCTGCATTATTTG+TGG - chr2_4:38078264-38078283 Msa0326920:CDS 30.0%
ACCAAATCTGCATTATTTGT+GGG - chr2_4:38078265-38078284 Msa0326920:CDS 30.0%
!! TAATAGATTCAGTCGTTTTC+GGG - chr2_4:38078361-38078380 Msa0326920:CDS 30.0%
! GACTTTTACTTTACTAAGCT+TGG - chr2_4:38078477-38078496 Msa0326920:CDS 30.0%
! TAATGTTTAGCTTACTATCC+AGG - chr2_4:38078700-38078719 Msa0326920:intron 30.0%
CACTAAAAAGTAGTTAGGAA+GGG + chr2_4:38078913-38078932 None:intergenic 30.0%
GATGATATCATTATCTGTGA+AGG + chr2_4:38079204-38079223 None:intergenic 30.0%
ACAAAAGTGGGAGAATAATT+CGG + chr2_4:38079575-38079594 None:intergenic 30.0%
!! AATTATTCTCCCACTTTTGT+TGG - chr2_4:38079575-38079594 Msa0326920:intron 30.0%
AGATGACAAATGATAAAGGA+TGG + chr2_4:38079608-38079627 None:intergenic 30.0%
CCAAAGATGACAAATGATAA+AGG + chr2_4:38079612-38079631 None:intergenic 30.0%
CCTTTATCATTTGTCATCTT+TGG - chr2_4:38079609-38079628 Msa0326920:intron 30.0%
!! GTGTAAAGCTAGCTTTAATT+TGG - chr2_4:38079631-38079650 Msa0326920:intron 30.0%
ATTTGGATTCTTTAGTCACA+TGG - chr2_4:38079648-38079667 Msa0326920:intron 30.0%
ATTGTTGAACAAGTCACTAA+TGG + chr2_4:38079684-38079703 None:intergenic 30.0%
! GACTTGTTCAACAATTACAA+TGG - chr2_4:38079689-38079708 Msa0326920:intron 30.0%
GGTTTAGTGACTATCATAAT+CGG - chr2_4:38079744-38079763 Msa0326920:intron 30.0%
! AATGCCAAATTTTCGTCAAT+GGG - chr2_4:38079776-38079795 Msa0326920:intron 30.0%
TCAAATAATCCAATGCAAAC+AGG - chr2_4:38080046-38080065 Msa0326920:CDS 30.0%
TAATTACTCAGAGACAAACA+TGG + chr2_4:38080235-38080254 None:intergenic 30.0%
GAGTAATTAACAAGATTGTG+TGG - chr2_4:38080246-38080265 Msa0326920:intron 30.0%
AGAAATGTGGAAATAGTAAC+TGG - chr2_4:38080359-38080378 Msa0326920:intron 30.0%
TGAGGATGTGCATTTATAAT+TGG + chr2_4:38080439-38080458 None:intergenic 30.0%
TTTCCTTTCCTTCAAGAAAA+TGG - chr2_4:38080496-38080515 Msa0326920:intron 30.0%
TTGGAATAATGATTGTGATC+CGG + chr2_4:38080596-38080615 None:intergenic 30.0%
AAACATGACTCATGCTATAA+TGG + chr2_4:38080801-38080820 None:intergenic 30.0%
TTACGTAAAATGCTTTCAAC+AGG - chr2_4:38081103-38081122 Msa0326920:CDS 30.0%
! GAAGTTCTTTTCTGCAAAAA+TGG + chr2_4:38081504-38081523 None:intergenic 30.0%
!! TAGTTTTACTTGTGCTGAAT+CGG - chr2_4:38081630-38081649 Msa0326920:five_prime_UTR 30.0%
TGGATATATGTAGATAGAGA+GGG + chr2_4:38081694-38081713 None:intergenic 30.0%
TTGGATATATGTAGATAGAG+AGG + chr2_4:38081695-38081714 None:intergenic 30.0%
! TTACATTACATTCTAGCTGT+TGG + chr2_4:38081714-38081733 None:intergenic 30.0%
! TTTTTCCCTTCAGTCTTTTG+AGG - chr2_4:38077271-38077290 Msa0326920:three_prime_UTR 35.0%
TAGTACCTCAAAAGACTGAA+GGG + chr2_4:38077279-38077298 None:intergenic 35.0%
ATAGTACCTCAAAAGACTGA+AGG + chr2_4:38077280-38077299 None:intergenic 35.0%
TTCTTGCAAGAATTGAAGTG+GGG - chr2_4:38077299-38077318 Msa0326920:three_prime_UTR 35.0%
AGAACCAAAGGTTCAATCTT+AGG - chr2_4:38077399-38077418 Msa0326920:intron 35.0%
CAAAGGTTCAATCTTAGGTT+GGG - chr2_4:38077404-38077423 Msa0326920:intron 35.0%
! TTTGAGGAATTGGGTTTTCA+TGG - chr2_4:38077492-38077511 Msa0326920:intron 35.0%
! ATTGGGTTTTCATGGTATGT+TGG - chr2_4:38077500-38077519 Msa0326920:intron 35.0%
! TTGGGTTTTCATGGTATGTT+GGG - chr2_4:38077501-38077520 Msa0326920:intron 35.0%
! GATGATGATGATGTTGTTGT+TGG - chr2_4:38077552-38077571 Msa0326920:intron 35.0%
CCTATTGAGTTTGAATGCTT+GGG + chr2_4:38077663-38077682 None:intergenic 35.0%
ACCTATTGAGTTTGAATGCT+TGG + chr2_4:38077664-38077683 None:intergenic 35.0%
AACTCAATAGGTGACACTAA+TGG - chr2_4:38077672-38077691 Msa0326920:intron 35.0%
!! TCACTCATTGATTTGAAGCT+TGG - chr2_4:38077702-38077721 Msa0326920:intron 35.0%
! GATTTGAAGCTTGGTAGATT+TGG - chr2_4:38077711-38077730 Msa0326920:intron 35.0%
!! AGATTTGGTGATCATAGAGA+TGG - chr2_4:38077726-38077745 Msa0326920:exon 35.0%
CCTTATTACATCCATGTACT+TGG + chr2_4:38077860-38077879 None:intergenic 35.0%
CCAAGTACATGGATGTAATA+AGG - chr2_4:38077857-38077876 Msa0326920:CDS 35.0%
GGATGTAATAAGGATTTGAG+TGG - chr2_4:38077867-38077886 Msa0326920:CDS 35.0%
!! GGTTTTGTCAACAATGTAGT+AGG - chr2_4:38077973-38077992 Msa0326920:CDS 35.0%
TTGTCAACAATGTAGTAGGT+TGG - chr2_4:38077977-38077996 Msa0326920:CDS 35.0%
TACATGACAAACAATTGAGG+AGG + chr2_4:38078233-38078252 None:intergenic 35.0%
CCAAATCTGCATTATTTGTG+GGG - chr2_4:38078266-38078285 Msa0326920:CDS 35.0%
ATTATTTGTGGGGAAATGGT+TGG - chr2_4:38078276-38078295 Msa0326920:CDS 35.0%
!! GGATTTTAGTCACTTAAGAG+CGG - chr2_4:38078498-38078517 Msa0326920:CDS 35.0%
CATATGGGGGTAATATTCTA+TGG - chr2_4:38078850-38078869 Msa0326920:intron 35.0%
TAAAAAGTAGTTAGGAAGGG+TGG + chr2_4:38078910-38078929 None:intergenic 35.0%
CCACTAAAAAGTAGTTAGGA+AGG + chr2_4:38078914-38078933 None:intergenic 35.0%
!!! CCTTCCTAACTACTTTTTAG+TGG - chr2_4:38078911-38078930 Msa0326920:intron 35.0%
!! CAATGGGCTAATTAATTGCA+TGG + chr2_4:38078964-38078983 None:intergenic 35.0%
CATGCAATTAATTAGCCCAT+TGG - chr2_4:38078962-38078981 Msa0326920:intron 35.0%
AACATCTGATCTTGATCCAA+TGG + chr2_4:38078991-38079010 None:intergenic 35.0%
!!! ACATCTTTTTTCCCTTCATC+GGG + chr2_4:38079463-38079482 None:intergenic 35.0%
!!! CACATCTTTTTTCCCTTCAT+CGG + chr2_4:38079464-38079483 None:intergenic 35.0%
ATGGATATAGATCTACAGCA+TGG - chr2_4:38079510-38079529 Msa0326920:intron 35.0%
! GAATGCCAAATTTTCGTCAA+TGG - chr2_4:38079775-38079794 Msa0326920:intron 35.0%
TAATTAGCTGTTCGTCCAAA+TGG + chr2_4:38079804-38079823 None:intergenic 35.0%
CTTACAGATAGTAGATTCCA+AGG - chr2_4:38080271-38080290 Msa0326920:intron 35.0%
AAAAGATGCTGATGTTAGCA+TGG + chr2_4:38080299-38080318 None:intergenic 35.0%
! GTCTTATCTTCTGAGAAATG+TGG - chr2_4:38080346-38080365 Msa0326920:intron 35.0%
ATTGTTGTACGAAGGAAACA+GGG + chr2_4:38080470-38080489 None:intergenic 35.0%
TATTGTTGTACGAAGGAAAC+AGG + chr2_4:38080471-38080490 None:intergenic 35.0%
! ATGTAGCACCATTTTCTTGA+AGG + chr2_4:38080507-38080526 None:intergenic 35.0%
TTATTCCAAGATACCTCCTT+AGG - chr2_4:38080607-38080626 Msa0326920:intron 35.0%
ATTGAAGTCTTCACTTCCTA+AGG + chr2_4:38080626-38080645 None:intergenic 35.0%
ATCAGCTGTTCAAGGATTAT+CGG - chr2_4:38080660-38080679 Msa0326920:intron 35.0%
ATAACTAAATGACCAGGCAT+GGG + chr2_4:38080763-38080782 None:intergenic 35.0%
AATAACTAAATGACCAGGCA+TGG + chr2_4:38080764-38080783 None:intergenic 35.0%
! ATGAGTCATGTTTCTGAAAG+TGG - chr2_4:38080808-38080827 Msa0326920:intron 35.0%
TCCGTCTGAGTTAAATCATA+CGG - chr2_4:38080846-38080865 Msa0326920:CDS 35.0%
TCCGTATGATTTAACTCAGA+CGG + chr2_4:38080850-38080869 None:intergenic 35.0%
TCTGAGTTAAATCATACGGA+TGG - chr2_4:38080850-38080869 Msa0326920:CDS 35.0%
! TCACCAAATTTTCTCTACGT+CGG - chr2_4:38081155-38081174 Msa0326920:CDS 35.0%
AAATACACAGTAGTACGACA+TGG + chr2_4:38081203-38081222 None:intergenic 35.0%
TGACTGGAAATATTCGTATC+AGG - chr2_4:38081542-38081561 Msa0326920:five_prime_UTR 35.0%
TCCGGAAAGAACTTAATATC+TGG - chr2_4:38081579-38081598 Msa0326920:five_prime_UTR 35.0%
GCCAGATATTAAGTTCTTTC+CGG + chr2_4:38081583-38081602 None:intergenic 35.0%
TGTATCAATGTGTGACATTC+AGG - chr2_4:38081754-38081773 Msa0326920:five_prime_UTR 35.0%
AGCTTCAGGTCTTTAAATAC+TGG + chr2_4:38081974-38081993 None:intergenic 35.0%
GATGGAACTCAAAGTGAAAC+AGG + chr2_4:38076852-38076871 None:intergenic 40.0%
! TACTTGGAAGTAGTGGGAAT+GGG + chr2_4:38076885-38076904 None:intergenic 40.0%
AGTGTGTACTTGGAAGTAGT+GGG + chr2_4:38076891-38076910 None:intergenic 40.0%
TGACTTTACCAGTGTGTACT+TGG + chr2_4:38076901-38076920 None:intergenic 40.0%
AGATGAAGCAGAGAACTGAA+TGG + chr2_4:38077053-38077072 None:intergenic 40.0%
! TTGATCTTGTGATGGAGTCA+TGG - chr2_4:38077325-38077344 Msa0326920:intron 40.0%
! ACACTTGGTAGTAGAACCAA+AGG - chr2_4:38077387-38077406 Msa0326920:intron 40.0%
CCAACCTAAGATTGAACCTT+TGG + chr2_4:38077406-38077425 None:intergenic 40.0%
CCAAAGGTTCAATCTTAGGT+TGG - chr2_4:38077403-38077422 Msa0326920:intron 40.0%
CCCAAGCATTCAAACTCAAT+AGG - chr2_4:38077660-38077679 Msa0326920:intron 40.0%
ATTGCTTACTGCCAAGTACA+TGG - chr2_4:38077846-38077865 Msa0326920:CDS 40.0%
CCCCACAAATAATGCAGATT+TGG + chr2_4:38078269-38078288 None:intergenic 40.0%
CTGCATTATTTGTGGGGAAA+TGG - chr2_4:38078272-38078291 Msa0326920:CDS 40.0%
ACTATCCAGGTTTCATTTGC+TGG - chr2_4:38078713-38078732 Msa0326920:intron 40.0%
! TTGCTGGCTGAATTTGATGA+TGG - chr2_4:38078729-38078748 Msa0326920:intron 40.0%
CCAGAATGAATACCAACTTG+TGG + chr2_4:38078807-38078826 None:intergenic 40.0%
!! CCACAAGTTGGTATTCATTC+TGG - chr2_4:38078804-38078823 Msa0326920:intron 40.0%
! GTATTCATTCTGGAAGAGCT+GGG - chr2_4:38078814-38078833 Msa0326920:intron 40.0%
GCAATTAATTAGCCCATTGG+TGG - chr2_4:38078965-38078984 Msa0326920:intron 40.0%
CTTCAGCAAATATATGCACG+TGG + chr2_4:38079141-38079160 None:intergenic 40.0%
TGATAGGCATTCCATCTTTG+TGG + chr2_4:38079353-38079372 None:intergenic 40.0%
AAGATGGAATGCCTATCATC+TGG - chr2_4:38079355-38079374 Msa0326920:intron 40.0%
GAATACTTTGGCCAGATGAT+AGG + chr2_4:38079369-38079388 None:intergenic 40.0%
!!! CATCTTTTTTCCCTTCATCG+GGG + chr2_4:38079462-38079481 None:intergenic 40.0%
GGTGCAAAACCAACAAAAGT+GGG + chr2_4:38079587-38079606 None:intergenic 40.0%
TGGTGCAAAACCAACAAAAG+TGG + chr2_4:38079588-38079607 None:intergenic 40.0%
TGGATTCTTTAGTCACATGG+TGG - chr2_4:38079651-38079670 Msa0326920:intron 40.0%
GGTTCCCATTGACGAAAATT+TGG + chr2_4:38079783-38079802 None:intergenic 40.0%
TTTCGTCAATGGGAACCATT+TGG - chr2_4:38079786-38079805 Msa0326920:intron 40.0%
AGACTGCTTGGAATAGCTTA+TGG + chr2_4:38079999-38080018 None:intergenic 40.0%
AGAAGAAAGAGGCCTAAAAC+CGG + chr2_4:38080413-38080432 None:intergenic 40.0%
! GCACCATTTTCTTGAAGGAA+AGG + chr2_4:38080502-38080521 None:intergenic 40.0%
AGTCAATATCCTCCTATCCA+AGG - chr2_4:38080559-38080578 Msa0326920:intron 40.0%
GAAACAGAATCAGCTGTTCA+AGG - chr2_4:38080652-38080671 Msa0326920:intron 40.0%
TCAGCTGTTCAAGGATTATC+GGG - chr2_4:38080661-38080680 Msa0326920:intron 40.0%
!! CGATTGGCTTGAAGAATTCT+GGG + chr2_4:38080731-38080750 None:intergenic 40.0%
!! TCGATTGGCTTGAAGAATTC+TGG + chr2_4:38080732-38080751 None:intergenic 40.0%
AATTCTTCAAGCCAATCGAC+AGG - chr2_4:38080733-38080752 Msa0326920:intron 40.0%
CTCGGAATAACTAAATGACC+AGG + chr2_4:38080769-38080788 None:intergenic 40.0%
GACTCATGCTATAATGGCTA+TGG + chr2_4:38080795-38080814 None:intergenic 40.0%
TGAAATCGCCCATTTCGAAA+TGG - chr2_4:38080909-38080928 Msa0326920:CDS 40.0%
ATGATTCTTCCTGCTCTCTA+CGG - chr2_4:38081079-38081098 Msa0326920:CDS 40.0%
TAGCCGACGTAGAGAAAATT+TGG + chr2_4:38081161-38081180 None:intergenic 40.0%
CAGGATAAGAACTTAGTGTC+CGG - chr2_4:38081561-38081580 Msa0326920:five_prime_UTR 40.0%
!! GTAGTGGGAATGGGTTTTGA+GGG + chr2_4:38076876-38076895 None:intergenic 45.0%
!! AGTAGTGGGAATGGGTTTTG+AGG + chr2_4:38076877-38076896 None:intergenic 45.0%
! GTACTTGGAAGTAGTGGGAA+TGG + chr2_4:38076886-38076905 None:intergenic 45.0%
CAGTGTGTACTTGGAAGTAG+TGG + chr2_4:38076892-38076911 None:intergenic 45.0%
CACTACTTCCAAGTACACAC+TGG - chr2_4:38076890-38076909 Msa0326920:three_prime_UTR 45.0%
TGAAGCAGAGAACTGAATGG+AGG + chr2_4:38077050-38077069 None:intergenic 45.0%
TGGGGTCTTTGATCTTGTGA+TGG - chr2_4:38077317-38077336 Msa0326920:intron 45.0%
TGAGTTTGAATGCTTGGGCT+TGG + chr2_4:38077658-38077677 None:intergenic 45.0%
ATCGTGGTCCCCTTAGAAAA+TGG + chr2_4:38077762-38077781 None:intergenic 45.0%
GGCAGTAAGCAATCTGAGAA+TGG + chr2_4:38077839-38077858 None:intergenic 45.0%
TTCAGCCAGCAAATGAAACC+TGG + chr2_4:38078721-38078740 None:intergenic 45.0%
GCTTTCTACGACGCTCATTA+TGG + chr2_4:38078785-38078804 None:intergenic 45.0%
! GGTATTCATTCTGGAAGAGC+TGG - chr2_4:38078813-38078832 Msa0326920:intron 45.0%
GGAGGTTGCTTCAGTCATAT+GGG - chr2_4:38078835-38078854 Msa0326920:intron 45.0%
GAGGTTGCTTCAGTCATATG+GGG - chr2_4:38078836-38078855 Msa0326920:intron 45.0%
AGGTTGCTTCAGTCATATGG+GGG - chr2_4:38078837-38078856 Msa0326920:intron 45.0%
GGAAGGGTGGAAAATTGAGA+AGG + chr2_4:38078897-38078916 None:intergenic 45.0%
TTGATCCAATGGCCACCAAT+GGG + chr2_4:38078980-38078999 None:intergenic 45.0%
! GACCACCTATGTATTGATCG+CGG - chr2_4:38079097-38079116 Msa0326920:intron 45.0%
TTCCGCGATCAATACATAGG+TGG + chr2_4:38079102-38079121 None:intergenic 45.0%
GCATTCCGCGATCAATACAT+AGG + chr2_4:38079105-38079124 None:intergenic 45.0%
TTAGAACCTGTGAGACTGCT+TGG + chr2_4:38080011-38080030 None:intergenic 45.0%
GCTTTACAGCCTGTTTGCAT+TGG + chr2_4:38080058-38080077 None:intergenic 45.0%
CTGATGTTAGCATGGTTCCT+TGG + chr2_4:38080291-38080310 None:intergenic 45.0%
ATATGCCAAGAGATACTCCC+CGG - chr2_4:38080319-38080338 Msa0326920:intron 45.0%
TCAGAAGATAAGACCTCACC+GGG + chr2_4:38080340-38080359 None:intergenic 45.0%
CTCAGAAGATAAGACCTCAC+CGG + chr2_4:38080341-38080360 None:intergenic 45.0%
TGCAGACCTATAAAAGCCGA+AGG - chr2_4:38080382-38080401 Msa0326920:intron 45.0%
AGACCTATAAAAGCCGAAGG+CGG - chr2_4:38080385-38080404 Msa0326920:intron 45.0%
GGAAACAGGGTTCTTGAATG+AGG + chr2_4:38080457-38080476 None:intergenic 45.0%
!! AATGGTGCTACATCTGCTAC+TGG - chr2_4:38080514-38080533 Msa0326920:intron 45.0%
CAATATCCTCCTATCCAAGG+AGG - chr2_4:38080562-38080581 Msa0326920:intron 45.0%
!! CACTTCCTAAGGAGGTATCT+TGG + chr2_4:38080615-38080634 None:intergenic 45.0%
GAAGTCTTCACTTCCTAAGG+AGG + chr2_4:38080623-38080642 None:intergenic 45.0%
!! GGATTATCGGGAGTATCAGA+CGG - chr2_4:38080673-38080692 Msa0326920:intron 45.0%
CTATAATGGCTATGGCTGCT+CGG + chr2_4:38080787-38080806 None:intergenic 45.0%
! TGTTTCTGAAAGTGGCGTCT+CGG - chr2_4:38080816-38080835 Msa0326920:intron 45.0%
! CCCATCTGCCATTTCGAAAT+GGG + chr2_4:38080920-38080939 None:intergenic 45.0%
CCCATTTCGAAATGGCAGAT+GGG - chr2_4:38080917-38080936 Msa0326920:CDS 45.0%
CCATTTCGAAATGGCAGATG+GGG - chr2_4:38080918-38080937 Msa0326920:CDS 45.0%
TGCCATCTTCACAGGAAAGA+CGG + chr2_4:38080978-38080997 None:intergenic 45.0%
CGACAGTTGAAGCAAGTCAA+TGG + chr2_4:38081004-38081023 None:intergenic 45.0%
! ATTTTCTCGCTTCACCTGCA+AGG + chr2_4:38081061-38081080 None:intergenic 45.0%
TTACGTAATCCGTAGAGAGC+AGG + chr2_4:38081091-38081110 None:intergenic 45.0%
!! TTTGAATATTAAATAAAAAA+TGG + chr2_4:38080164-38080183 None:intergenic 5.0%
!!! GGAATGGGTTTTGAGGGTGA+TGG + chr2_4:38076870-38076889 None:intergenic 50.0%
! ACCACGATTTTGTCGTCGTC+TGG - chr2_4:38077774-38077793 Msa0326920:CDS 50.0%
TCCAGACGACGACAAAATCG+TGG + chr2_4:38077778-38077797 None:intergenic 50.0%
AGCTGTCGTAAACGTCTTGC+AGG - chr2_4:38078759-38078778 Msa0326920:intron 50.0%
CGTCGTAGAAAGCCACAAGT+TGG - chr2_4:38078792-38078811 Msa0326920:intron 50.0%
! TTCATTCTGGAAGAGCTGGG+AGG - chr2_4:38078817-38078836 Msa0326920:intron 50.0%
GGGAGGTTGCTTCAGTCATA+TGG - chr2_4:38078834-38078853 Msa0326920:intron 50.0%
! ATTAGCCCATTGGTGGCCAT+TGG - chr2_4:38078972-38078991 Msa0326920:intron 50.0%
CTTGATCCAATGGCCACCAA+TGG + chr2_4:38078981-38079000 None:intergenic 50.0%
! TGTATTGATCGCGGAATGCG+TGG - chr2_4:38079106-38079125 Msa0326920:intron 50.0%
! GTATTGATCGCGGAATGCGT+GGG - chr2_4:38079107-38079126 Msa0326920:intron 50.0%
ACGTGTTCTTACCCCGATGA+AGG - chr2_4:38079448-38079467 Msa0326920:intron 50.0%
CGTGTTCTTACCCCGATGAA+GGG - chr2_4:38079449-38079468 Msa0326920:intron 50.0%
GCTATTCCAAGCAGTCTCAC+AGG - chr2_4:38080002-38080021 Msa0326920:CDS 50.0%
CAGAAGATAAGACCTCACCG+GGG + chr2_4:38080339-38080358 None:intergenic 50.0%
! GTTCCGCCTTCGGCTTTTAT+AGG + chr2_4:38080391-38080410 None:intergenic 50.0%
ATAAAAGCCGAAGGCGGAAC+CGG - chr2_4:38080391-38080410 Msa0326920:intron 50.0%
GAATTCGAGCCTCCTTGGAT+AGG + chr2_4:38080574-38080593 None:intergenic 50.0%
ATCCAAGGAGGCTCGAATTC+CGG - chr2_4:38080574-38080593 Msa0326920:intron 50.0%
!! TTATCGGGAGTATCAGACGG+TGG - chr2_4:38080676-38080695 Msa0326920:intron 50.0%
GCATGGGAATTCCTGTCGAT+TGG + chr2_4:38080747-38080766 None:intergenic 50.0%
GCCCATTTCGAAATGGCAGA+TGG - chr2_4:38080916-38080935 Msa0326920:CDS 50.0%
! CCCCATCTGCCATTTCGAAA+TGG + chr2_4:38080921-38080940 None:intergenic 50.0%
! AATGGCAGATGGGGTTTTCC+AGG - chr2_4:38080927-38080946 Msa0326920:CDS 50.0%
! ATGGCAGATGGGGTTTTCCA+GGG - chr2_4:38080928-38080947 Msa0326920:CDS 50.0%
GACCGTCTTTCCTGTGAAGA+TGG - chr2_4:38080973-38080992 Msa0326920:CDS 50.0%
AATGGTCGTGCCATCTTCAC+AGG + chr2_4:38080986-38081005 None:intergenic 50.0%
TTCAGCGTGTTGAGCATCAG+AGG - chr2_4:38081031-38081050 Msa0326920:CDS 50.0%
GAAGACCTCACCCTCTTCGA+CGG + chr2_4:38077810-38077829 None:intergenic 55.0%
GTCGAAGAGGGTGAGGTCTT+CGG - chr2_4:38077809-38077828 Msa0326920:CDS 55.0%
! CCTAAAACCGGTTCCGCCTT+CGG + chr2_4:38080401-38080420 None:intergenic 55.0%
TTCGAGCCTCCTTGGATAGG+AGG + chr2_4:38080571-38080590 None:intergenic 55.0%
ATCCGGAATTCGAGCCTCCT+TGG + chr2_4:38080579-38080598 None:intergenic 55.0%
TCGACAGGAATTCCCATGCC+TGG - chr2_4:38080748-38080767 Msa0326920:intron 55.0%
CTGAAAGTGGCGTCTCGGAT+AGG - chr2_4:38080821-38080840 Msa0326920:intron 55.0%
! TGGCAGATGGGGTTTTCCAG+GGG - chr2_4:38080929-38080948 Msa0326920:CDS 55.0%
! AGATGGGGTTTTCCAGGGGT+CGG - chr2_4:38080933-38080952 Msa0326920:CDS 55.0%
CGTTGACAAAATCCGACCCC+TGG + chr2_4:38080948-38080967 None:intergenic 55.0%
CCAGTCACAACAAGCTGCAC+AGG + chr2_4:38081529-38081548 None:intergenic 55.0%
!! CCTGTGCAGCTTGTTGTGAC+TGG - chr2_4:38081526-38081545 Msa0326920:five_prime_UTR 55.0%
CTCGTGAAGCTGACCAATGG+CGG - chr2_4:38081653-38081672 Msa0326920:five_prime_UTR 55.0%
ATCGTCGACGCCGTCGAAGA+GGG - chr2_4:38077797-38077816 Msa0326920:CDS 60.0%
!! CCTCACCGGGGAGTATCTCT+TGG + chr2_4:38080327-38080346 None:intergenic 60.0%
CCAAGAGATACTCCCCGGTG+AGG - chr2_4:38080324-38080343 Msa0326920:intron 60.0%
!! CCGAAGGCGGAACCGGTTTT+AGG - chr2_4:38080398-38080417 Msa0326920:intron 60.0%
CGGCTCGTGAAGCTGACCAA+TGG - chr2_4:38081650-38081669 Msa0326920:five_prime_UTR 60.0%
TGAAGCTGACCAATGGCGGC+TGG - chr2_4:38081657-38081676 Msa0326920:five_prime_UTR 60.0%
GAAGCTGACCAATGGCGGCT+GGG - chr2_4:38081658-38081677 Msa0326920:five_prime_UTR 60.0%
TATTGCGTCCCAGCCGCCAT+TGG + chr2_4:38081669-38081688 None:intergenic 60.0%
GATCGTCGACGCCGTCGAAG+AGG - chr2_4:38077796-38077815 Msa0326920:CDS 65.0%
GCATCAGAGGCGAGCCTTGC+AGG - chr2_4:38081044-38081063 Msa0326920:CDS 65.0%
CGACGCCGTCGAAGAGGGTG+AGG - chr2_4:38077802-38077821 Msa0326920:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 38076836 38082001 38076836 ID=Msa0326920;Name=Msa0326920
chr2_4 mRNA 38076836 38082001 38076836 ID=Msa0326920-mRNA-1;Parent=Msa0326920;Name=Msa0326920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=500|1|1|1|0.66|0.75|4|503|542
chr2_4 exon 38076836 38077324 38076836 ID=Msa0326920-mRNA-1:exon:11466;Parent=Msa0326920-mRNA-1
chr2_4 exon 38077713 38078559 38077713 ID=Msa0326920-mRNA-1:exon:11465;Parent=Msa0326920-mRNA-1
chr2_4 exon 38079979 38080115 38079979 ID=Msa0326920-mRNA-1:exon:11464;Parent=Msa0326920-mRNA-1
chr2_4 exon 38080843 38082001 38080843 ID=Msa0326920-mRNA-1:exon:11463;Parent=Msa0326920-mRNA-1
chr2_4 five_prime_UTR 38081502 38082001 38081502 ID=Msa0326920-mRNA-1:five_prime_utr;Parent=Msa0326920-mRNA-1
chr2_4 CDS 38080843 38081501 38080843 ID=Msa0326920-mRNA-1:cds;Parent=Msa0326920-mRNA-1
chr2_4 CDS 38079979 38080115 38079979 ID=Msa0326920-mRNA-1:cds;Parent=Msa0326920-mRNA-1
chr2_4 CDS 38077727 38078559 38077727 ID=Msa0326920-mRNA-1:cds;Parent=Msa0326920-mRNA-1
chr2_4 three_prime_UTR 38077713 38077726 38077713 ID=Msa0326920-mRNA-1:three_prime_utr;Parent=Msa0326920-mRNA-1
chr2_4 three_prime_UTR 38076836 38077324 38076836 ID=Msa0326920-mRNA-1:three_prime_utr;Parent=Msa0326920-mRNA-1
Gene Sequence

>Msa0326920

ATGGAGTCATGGAGTTTTGATCCACAAGATAAAGAGTATGTTTCAAATGACACACTTGGTAGTAGAACCAAAGGTTCAATCTTAGGTTGGGATTTGAAAACCCCATCTAGTTTTTTACCTCAACAAAACATAGAAAATGACAACAATAATCAAGGTTTTGAGGAATTGGGTTTTCATGGTATGTTGGGAAAACAATTGTCTAATGTTGTTGATGATGATGATGATGATGTTGTTGTTGGTAACAAAATTGTCACTAGTAGTTCTTTTGTTATGGCTGCACCAAATGCATTTTCAGAAAGAGAACAACAACACTTCAATTCCAAGCCCAAGCATTCAAACTCAATAGGTGACACTAATGGTTCTAATTCACTCATTGATTTGAAGCTTGGTAGATTTGGTGATCATAGAGATGGAATTGATACACCATTTTCTAAGGGGACCACGATTTTGTCGTCGTCTGGATCGTCGACGCCGTCGAAGAGGGTGAGGTCTTCGGCAGTCCATTCTCAGATTGCTTACTGCCAAGTACATGGATGTAATAAGGATTTGAGTGGTTGTAAAGATTATCACAAGAGGCATAAAGTTTGTGAAGTTCATTCAAAGACTTCTAAAGTAATAGTGAATGGAATTGAACAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGTCTTGCAGGCCATAATGAGCGTCGTAGAAAGCCACAAGTTGGTATTCATTCTGGAAGAGCTGGGAGGTTGCTTCAGTCATATGGGGATAGTAGATTCCAAGGAACCATGCTAACATCAGCATCTTTTATATGCCAAGAGATACTCCCCGGTGAGGTCTTATCTTCTGAGAAATGTGGAAATAGTAACTGGTGCAGACCTATAAAAGCCGAAGGCGGAACCGGTTTTAGGCCTCTTTCTTCTATTCCAATTATAAATGCACATCCTCATTCAAGAACCCTGTTTCCTTCGTACAACAATAAACAATTTCCTTTCCTTCAAGAAAATGGTGCTACATCTGCTACTGGAAGCATCTTCTGTGAAAACAGTAGTCAATATCCTCCTATCCAAGGAGGCTCGAATTCCGGATCACAATCATTATTCCAAGATACCTCCTTAGGAAGTGAAGACTTCAATGTTTTTGAAACAGAATCAGCTGTTCAAGGATTATCGGGAGTATCAGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAATTCTTCAAGCCAATCGACAGGAATTCCCATGCCTGGTCATTTAGTTATTCCGAGCAGCCATAGCCATTATAGCATGAGTCATGTTTCTGAAAGTGGCGTCTCGGATAGGTTTCCGTCTGAGTTAAATCATACGGATGGAAGTCATCTTAGTCCTATATTAATATCAAACAGTAATGAAATCGCCCATTTCGAAATGGCAGATGGGGTTTTCCAGGGGTCGGATTTTGTCAACGTGAAAGACCGTCTTTCCTGTGAAGATGGCACGACCATTGACTTGCTTCAACTGTCGTCACAACTTCAGCGTGTTGAGCATCAGAGGCGAGCCTTGCAGGTGAAGCGAGAAAATGATTCTTCCTGCTCTCTACGGATTACGTAA
Protein sequence

>Msa0326920

MESWSFDPQDKEYVSNDTLGSRTKGSILGWDLKTPSSFLPQQNIENDNNNQGFEELGFHGMLGKQLSNVVDDDDDDVVVGNKIVTSSSFVMAAPNAFSEREQQHFNSKPKHSNSIGDTNGSNSLIDLKLGRFGDHRDGIDTPFSKGTTILSSSGSSTPSKRVRSSAVHSQIAYCQVHGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYGDSRFQGTMLTSASFICQEILPGEVLSSEKCGNSNWCRPIKAEGGTGFRPLSSIPIINAHPHSRTLFPSYNNKQFPFLQENGATSATGSIFCENSSQYPPIQGGSNSGSQSLFQDTSLGSEDFNVFETESAVQGLSGVSDGGCALSLLSSQSQNSSSQSTGIPMPGHLVIPSSHSHYSMSHVSESGVSDRFPSELNHTDGSHLSPILISNSNEIAHFEMADGVFQGSDFVNVKDRLSCEDGTTIDLLQLSSQLQRVEHQRRALQVKRENDSSCSLRIT*