AlfalfaGEDB | Msa0395870

M. sativa cultivar zhongmu-4 / Msa0395870

KEGG: K12878
GO: GO:0000160 GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0030422 GO:0031047 GO:0031050 GO:0031503 GO:0032870 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035556 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699
PFAM: PF11957.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395870	XP_024635469.1	97.855	606	8	2	1	601	1	606	0.0	1219

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395870	sp\|Q93VM9\|THOC1_ARATH	73.746	598	147	5	1	594	1	592	0.0	914

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395870	A0A396IJ60	97.855	606	8	2	1	601	1	606	0.0	1219

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0395870	0.810758	9.830725e-51	-8.615850e-47
Msa0008670	Msa0395870	0.802797	4.729777e-49	-8.615850e-47
Msa0017510	Msa0395870	0.800790	1.221735e-48	-8.615850e-47
Msa0040450	Msa0395870	0.813646	2.303168e-51	-8.615850e-47
Msa0044020	Msa0395870	0.815383	9.509846e-52	-8.615850e-47
Msa0047050	Msa0395870	0.811803	5.831321e-51	-8.615850e-47
Msa0054480	Msa0395870	0.803667	3.124845e-49	-8.615850e-47
Msa0068680	Msa0395870	0.801637	8.197521e-49	-8.615850e-47
Msa0076000	Msa0395870	0.823576	1.285781e-53	-8.615850e-47
Msa0076310	Msa0395870	0.802482	5.493057e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395870	MtrunA17_Chr3g0081951	97.855	606	8	2	1	601	1	606	0.0	1219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395870	AT5G09860.1	73.746	598	147	5	1	594	1	592	0.0	914
Msa0395870	AT5G09860.2	73.579	598	147	6	1	594	1	591	0.0	908

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Find 146 sgRNAs with CRISPR-Local

Find 1055 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGGCCATATTACAACC+TGG	0.546155	3_2:-13212977	Msa0395870:CDS
AAAGATTACCAACAAGCTGG+AGG	0.667174	3_2:+13209029	None:intergenic
AAAGTTCACCTCCAGCTTGT+TGG	0.472457	3_2:-13209037	Msa0395870:intron
AACGGGCCATATTACAACCT+GGG	0.554894	3_2:-13212976	Msa0395870:CDS
AACTGTCTCAGTTGTGGAAG+TGG	0.476519	3_2:-13205131	Msa0395870:CDS
AAGACGAGGAATGTGGCCTT+GGG	0.522881	3_2:+13210525	None:intergenic
AAGGTCTTCGTCTTTCAGCA+CGG	0.616622	3_2:-13202724	Msa0395870:CDS
AATACCACCACAAGAATAAT+CGG	0.381891	3_2:-13204196	Msa0395870:CDS
AATCCCTAGAGAACATTCTA+CGG	0.577568	3_2:-13211831	Msa0395870:CDS
AATCTTACATCTTCAGCCAA+CGG	0.595620	3_2:+13204396	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTCAATTCAAACTCCATAA+TGG	-	chr3_2:13199100-13199119	Msa0395870:three_prime_UTR	30.0%
TTTGAATGGTTATAGGTTCT+GGG	-	chr3_2:13199261-13199280	Msa0395870:exon	30.0%
TATCAAAATAAGGTCCTGTT+TGG	-	chr3_2:13199332-13199351	Msa0395870:CDS	30.0%
GGAAACAAAATTGGTTATAG+AGG	+	chr3_2:13199691-13199710	None:intergenic	30.0%
TGGATAACGTAGTGTATATT+TGG	+	chr3_2:13199727-13199746	None:intergenic	30.0%
AACATTCACACAAGTACTTA+TGG	-	chr3_2:13199807-13199826	Msa0395870:intron	30.0%
TGTTTGATTGTTGAATTCAC+TGG	-	chr3_2:13199889-13199908	Msa0395870:intron	30.0%
GTACTACAATTATACTGGAA+TGG	+	chr3_2:13200167-13200186	None:intergenic	30.0%
CTGAACTAATTTCCAAACTA+TGG	-	chr3_2:13200206-13200225	Msa0395870:intron	30.0%
AATCTACTACATCCATAGTT+TGG	+	chr3_2:13200221-13200240	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	13198969	13213983	13198969	ID=Msa0395870;Name=Msa0395870
chr3_2	mRNA	13198969	13213983	13198969	ID=Msa0395870-mRNA-1;Parent=Msa0395870;Name=Msa0395870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=150\|1\|1\|1\|1\|1\|21\|295\|601
chr3_2	exon	13198969	13199503	13198969	ID=Msa0395870-mRNA-1:exon:3087;Parent=Msa0395870-mRNA-1
chr3_2	exon	13202468	13202617	13202468	ID=Msa0395870-mRNA-1:exon:3086;Parent=Msa0395870-mRNA-1
chr3_2	exon	13202700	13202759	13202700	ID=Msa0395870-mRNA-1:exon:3085;Parent=Msa0395870-mRNA-1
chr3_2	exon	13204196	13204246	13204196	ID=Msa0395870-mRNA-1:exon:3084;Parent=Msa0395870-mRNA-1
chr3_2	exon	13204404	13204475	13204404	ID=Msa0395870-mRNA-1:exon:3083;Parent=Msa0395870-mRNA-1
chr3_2	exon	13205116	13205182	13205116	ID=Msa0395870-mRNA-1:exon:3082;Parent=Msa0395870-mRNA-1
chr3_2	exon	13206450	13206532	13206450	ID=Msa0395870-mRNA-1:exon:3081;Parent=Msa0395870-mRNA-1
chr3_2	exon	13206654	13206770	13206654	ID=Msa0395870-mRNA-1:exon:3080;Parent=Msa0395870-mRNA-1
chr3_2	exon	13208468	13208509	13208468	ID=Msa0395870-mRNA-1:exon:3079;Parent=Msa0395870-mRNA-1
chr3_2	exon	13208608	13208673	13208608	ID=Msa0395870-mRNA-1:exon:3078;Parent=Msa0395870-mRNA-1
chr3_2	exon	13208804	13208929	13208804	ID=Msa0395870-mRNA-1:exon:3077;Parent=Msa0395870-mRNA-1
chr3_2	exon	13209038	13209109	13209038	ID=Msa0395870-mRNA-1:exon:3076;Parent=Msa0395870-mRNA-1
chr3_2	exon	13209351	13209397	13209351	ID=Msa0395870-mRNA-1:exon:3075;Parent=Msa0395870-mRNA-1
chr3_2	exon	13209524	13209589	13209524	ID=Msa0395870-mRNA-1:exon:3074;Parent=Msa0395870-mRNA-1
chr3_2	exon	13209682	13209754	13209682	ID=Msa0395870-mRNA-1:exon:3073;Parent=Msa0395870-mRNA-1
chr3_2	exon	13210067	13210138	13210067	ID=Msa0395870-mRNA-1:exon:3072;Parent=Msa0395870-mRNA-1
chr3_2	exon	13210255	13210400	13210255	ID=Msa0395870-mRNA-1:exon:3071;Parent=Msa0395870-mRNA-1
chr3_2	exon	13210521	13210614	13210521	ID=Msa0395870-mRNA-1:exon:3070;Parent=Msa0395870-mRNA-1
chr3_2	exon	13211810	13211884	13211810	ID=Msa0395870-mRNA-1:exon:3069;Parent=Msa0395870-mRNA-1
chr3_2	exon	13212925	13213008	13212925	ID=Msa0395870-mRNA-1:exon:3068;Parent=Msa0395870-mRNA-1
chr3_2	exon	13213831	13213983	13213831	ID=Msa0395870-mRNA-1:exon:3067;Parent=Msa0395870-mRNA-1
chr3_2	five_prime_UTR	13213834	13213983	13213834	ID=Msa0395870-mRNA-1:five_prime_utr;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13213831	13213833	13213831	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13212925	13213008	13212925	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13211810	13211884	13211810	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13210521	13210614	13210521	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13210255	13210400	13210255	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13210067	13210138	13210067	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13209682	13209754	13209682	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13209524	13209589	13209524	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13209351	13209397	13209351	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13209038	13209109	13209038	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13208804	13208929	13208804	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13208608	13208673	13208608	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13208468	13208509	13208468	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13206654	13206770	13206654	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13206450	13206532	13206450	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13205116	13205182	13205116	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13204404	13204475	13204404	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13204196	13204246	13204196	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13202700	13202759	13202700	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13202468	13202617	13202468	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	CDS	13199264	13199503	13199264	ID=Msa0395870-mRNA-1:cds;Parent=Msa0395870-mRNA-1
chr3_2	three_prime_UTR	13198969	13199263	13198969	ID=Msa0395870-mRNA-1:three_prime_utr;Parent=Msa0395870-mRNA-1

Gene Sequence

>Msa0395870

ATGGAGGTATTTAAACGGGCCATATTACAACCTGGGCCACCTGAAAGTTTTGCTTTGCAGACTGTTCAAGAAGTAATAAAGCCTCAGAGACAAACAAAATTAGCCCAAGATGAGAACCAATCCCTAGAGAACATTCTACGGCTGCTACTTCAGGAATTCGTGTCGGCAGCAGTACAGTGTGGGGAGGAAGTAATGCAATACGGGCAATCAATTGATGCTAATGAAACTGCCCAAGGCCACATTCCTCGTCTTCTTGATATAGTGCTATATCTGTGTGAGAAGGAACACATTGAAGGTGGAATGATTTTTCAGTTGTTGGAAGATTTGACAGAAATGTCTACAATGAAAAACTGCAAGGATATTTTTGGCTATATAGAGAGTAAACAAGATATATTGGGAAAGCAAGAACTTTTTGCTCGAGGAAAACTTGTGATGCTGAGAACCTGTAATCAACTACTTCGCCGTCTTTCAAAGGCAAATGATGTGGTCTTTTGCGGAAGAATTCTCATGTTTCTGGCTCATTTCTTTCCATTATCAGAGCGATCTGCCTTAAATATCAAGGGAGTTTTTAACACATCAAATGAAACAAAATATGAGAAAGAACCTGTAGAAGGCATATGCATTGATTTCAATTTTTATGAAACTTTTTGGGGCTTACAGGAATATTTTTCCAACCCTGCTCCTATAATTCACTCTACATTTAAGTGGAAAAAGTTCACCTCCAGCTTGTTGGTTGTACTGAATACATTTGAAGCACAACCTTTAAGTGACGAAGAGGGAGATGCTAATAATTTGGAAGAAGAGGCAGTTAACTTTAGTATAAAATATCTCACAAGCAGTAAATTAATGGGTCTAGAGTTGAAGGATCCAAGTTTTCGACGCCATGTTCTTGTGCAGTGTCTCATATTGTTTAATTATTTGAAGGCCCCTGGAAAAAGTGACAAGGATTTGCCATCTGAAACCATGAAAGATGAGATCACATCATGTGAAGAACGTGTTAAAAAACTTATTGAACTGACTCCACCCAAAGGCAAAGAGTTCCTTCACAAAATTGAGCATATATTAGAACGAGAAAAGAATTGGGTGTGGTGGAAACGTGACGGCTGCCCACCATATGAAAAACAACCTACAGAGAAGAAAGCGGTACAAGATGGGTCGAAGAAACGTAAGCCAAGATGGAGATTGGGTAACAAAGAACTGTCTCAGTTGTGGAAGTGGGCAGATCAAAATCCGAATGCTTTAACTGATCCTCAACGTGTTCAAACACCTTCAATTCTGGAGTACTGGAAACCGTTGGCTGAAGATATGGATCCTTCTGCTGGAATAGAAGCTGAATACCACCACAAGAATAATCGGGTTTATTGTTGGAAAGGTCTTCGTCTTTCAGCACGGCAGGACTTGGAGGGTTTTTCTAAGTTTACTGAATATGGAATTGAAGGGGTTGTACCACTAGAACTTTTGCCGTCTGATGTCCAATCTAAATACCAAGCTAAACCAAATGACAGAAGTAAACGTGGTAAAAAGGAAGAGGCAAAAAAAGCTGCTAATCAAGTTGAAGAAAATCAGACTGCTACACCTTCAACTGAGATAGATGGTGAAGGCATTAGAGCAGATAGCACAGCAACACCTATGGAATTTGATGCTGCTGCTCTCCCTGGTGGAACCTCAACTTCTGATGAACTTCAGAAGAATGGCTCAGATACTGATATCGGTCAGGAAGCAGGTCAATTGGAAGCAGATACTGAAGTTGAAGATGGACTCATAGATGATGCTGATGCTGATGCTGATTTAGATGCAGTTGGCTAA

Protein sequence

>Msa0395870

MEVFKRAILQPGPPESFALQTVQEVIKPQRQTKLAQDENQSLENILRLLLQEFVSAAVQCGEEVMQYGQSIDANETAQGHIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSALNIKGVFNTSNETKYEKEPVEGICIDFNFYETFWGLQEYFSNPAPIIHSTFKWKKFTSSLLVVLNTFEAQPLSDEEGDANNLEEEAVNFSIKYLTSSKLMGLELKDPSFRRHVLVQCLILFNYLKAPGKSDKDLPSETMKDEITSCEERVKKLIELTPPKGKEFLHKIEHILEREKNWVWWKRDGCPPYEKQPTEKKAVQDGSKKRKPRWRLGNKELSQLWKWADQNPNALTDPQRVQTPSILEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRLSARQDLEGFSKFTEYGIEGVVPLELLPSDVQSKYQAKPNDRSKRGKKEEAKKAANQVEENQTATPSTEIDGEGIRADSTATPMEFDAAALPGGTSTSDELQKNGSDTDIGQEAGQLEADTEVEDGLIDDADADADLDAVG*