Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0331720 | Msa1204980 | -0.808175 | 3.524301e-50 | -8.615850e-47 |
| Msa0331720 | Msa1205010 | -0.804627 | 1.972723e-49 | -8.615850e-47 |
| Msa0331720 | Msa1256540 | -0.801230 | 9.931294e-49 | -8.615850e-47 |
| Msa0331720 | Msa1296960 | -0.801079 | 1.066233e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATTTCCTCCTGGATT+TGG | 0.266908 | 2_4:+47688818 | None:intergenic |
| TAATTTCATTGCAGGAAGAA+TGG | 0.420159 | 2_4:-47688629 | Msa0331720:intron |
| AACTAACATGAATTTCCTCC+TGG | 0.422209 | 2_4:+47688812 | None:intergenic |
| CTTCAATAATGCTATAATGA+TGG | 0.425542 | 2_4:+47689574 | None:intergenic |
| TCTTGTGTACAAAAGACAAT+TGG | 0.432974 | 2_4:+47688600 | None:intergenic |
| ATGTCGCTGCCATCCTTTCA+AGG | 0.481072 | 2_4:-47689503 | Msa0331720:CDS |
| TTCAATAATGCTATAATGAT+GGG | 0.489170 | 2_4:+47689575 | None:intergenic |
| TTTCATAGACGGAGGATGAA+TGG | 0.511816 | 2_4:-47689528 | Msa0331720:CDS |
| CTCCGTCTATGAAATCCTCT+TGG | 0.518853 | 2_4:+47689537 | None:intergenic |
| AGCCTCTTACATTCCTTGAA+AGG | 0.522554 | 2_4:+47689490 | None:intergenic |
| TCTTACATTCCTTGAAAGGA+TGG | 0.539804 | 2_4:+47689494 | None:intergenic |
| AACCAAGAGGATTTCATAGA+CGG | 0.566720 | 2_4:-47689539 | Msa0331720:CDS |
| TTTGTACACAAGAGAAGAGG+TGG | 0.586704 | 2_4:-47688590 | Msa0331720:CDS |
| TTGTACACAAGAGAAGAGGT+GGG | 0.621613 | 2_4:-47688589 | Msa0331720:CDS |
| TGTACACAAGAGAAGAGGTG+GGG | 0.637250 | 2_4:-47688588 | Msa0331720:CDS |
| CAAGAGGATTTCATAGACGG+AGG | 0.668361 | 2_4:-47689536 | Msa0331720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTCTTCTAAAAAT+TGG | - | chr2_4:47688841-47688860 | Msa0331720:intron | 10.0% |
| !!! | TTATTTTTTCTTCTAAAAAT+TGG | - | chr2_4:47688841-47688860 | Msa0331720:intron | 10.0% |
| !! | ATATTAAAAAGGGATAAAAA+TGG | + | chr2_4:47688370-47688389 | None:intergenic | 15.0% |
| !!! | TGTATAAATTTTAGTAAGTT+TGG | - | chr2_4:47688990-47689009 | Msa0331720:intron | 15.0% |
| !!! | TTTTTTTAGTATGAATTGAA+AGG | - | chr2_4:47689038-47689057 | Msa0331720:intron | 15.0% |
| !!! | ACTTTTTTTTTTATCTCATT+CGG | - | chr2_4:47689436-47689455 | Msa0331720:intron | 15.0% |
| !!! | AAAGTAAAATACAACATTTT+AGG | + | chr2_4:47690137-47690156 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTTCCTTTTTT+TGG | - | chr2_4:47690163-47690182 | Msa0331720:intron | 15.0% |
| !!! | TTTTTCTTTTTCCTTTTTTT+GGG | - | chr2_4:47690164-47690183 | Msa0331720:intron | 15.0% |
| !! | ATTAGAAAACGAAAAAATTA+TGG | + | chr2_4:47690202-47690221 | None:intergenic | 15.0% |
| !! | ATATTAAAAAGGGATAAAAA+TGG | + | chr2_4:47688370-47688389 | None:intergenic | 15.0% |
| !!! | TGTATAAATTTTAGTAAGTT+TGG | - | chr2_4:47688990-47689009 | Msa0331720:intron | 15.0% |
| !!! | TTTTTTTAGTATGAATTGAA+AGG | - | chr2_4:47689038-47689057 | Msa0331720:intron | 15.0% |
| !!! | ACTTTTTTTTTTATCTCATT+CGG | - | chr2_4:47689436-47689455 | Msa0331720:intron | 15.0% |
| !!! | AAAGTAAAATACAACATTTT+AGG | + | chr2_4:47690137-47690156 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTTCCTTTTTT+TGG | - | chr2_4:47690163-47690182 | Msa0331720:intron | 15.0% |
| !!! | TTTTTCTTTTTCCTTTTTTT+GGG | - | chr2_4:47690164-47690183 | Msa0331720:intron | 15.0% |
| !! | ATTAGAAAACGAAAAAATTA+TGG | + | chr2_4:47690202-47690221 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTCTAGCTATAA+TGG | - | chr2_4:47688393-47688412 | Msa0331720:intron | 20.0% |
| !! | ATAAATACAACAGAAAAACA+GGG | + | chr2_4:47688737-47688756 | None:intergenic | 20.0% |
| !! | AATAAATACAACAGAAAAAC+AGG | + | chr2_4:47688738-47688757 | None:intergenic | 20.0% |
| !! | TAAATTCACTATAACATGAT+AGG | + | chr2_4:47688949-47688968 | None:intergenic | 20.0% |
| !! | TTCAATAATGCTATAATGAT+GGG | + | chr2_4:47689281-47689300 | None:intergenic | 20.0% |
| !! | ATATTTAAAAAGTGATTCGA+CGG | - | chr2_4:47689698-47689717 | Msa0331720:intron | 20.0% |
| !!! | GAAGAAAAATTAATTTGAGA+AGG | + | chr2_4:47689923-47689942 | None:intergenic | 20.0% |
| !!! | AATTAATTTTTCTTCTCACT+TGG | - | chr2_4:47689928-47689947 | Msa0331720:intron | 20.0% |
| !! | GATAAAGAAACTGAAATAAT+TGG | + | chr2_4:47690001-47690020 | None:intergenic | 20.0% |
| !! | TCTAATTATAATTTCATTGC+AGG | - | chr2_4:47690216-47690235 | Msa0331720:intron | 20.0% |
| !!! | TTTTTTCTTTCTAGCTATAA+TGG | - | chr2_4:47688393-47688412 | Msa0331720:intron | 20.0% |
| !! | ATAAATACAACAGAAAAACA+GGG | + | chr2_4:47688737-47688756 | None:intergenic | 20.0% |
| !! | AATAAATACAACAGAAAAAC+AGG | + | chr2_4:47688738-47688757 | None:intergenic | 20.0% |
| !! | TAAATTCACTATAACATGAT+AGG | + | chr2_4:47688949-47688968 | None:intergenic | 20.0% |
| !! | TTCAATAATGCTATAATGAT+GGG | + | chr2_4:47689281-47689300 | None:intergenic | 20.0% |
| !! | ATATTTAAAAAGTGATTCGA+CGG | - | chr2_4:47689698-47689717 | Msa0331720:intron | 20.0% |
| !!! | GAAGAAAAATTAATTTGAGA+AGG | + | chr2_4:47689923-47689942 | None:intergenic | 20.0% |
| !!! | AATTAATTTTTCTTCTCACT+TGG | - | chr2_4:47689928-47689947 | Msa0331720:intron | 20.0% |
| !! | GATAAAGAAACTGAAATAAT+TGG | + | chr2_4:47690001-47690020 | None:intergenic | 20.0% |
| !! | TCTAATTATAATTTCATTGC+AGG | - | chr2_4:47690216-47690235 | Msa0331720:intron | 20.0% |
| !!! | AAATGTTTTTCAAGCATTGA+GGG | - | chr2_4:47688312-47688331 | Msa0331720:intron | 25.0% |
| !!! | TTTTTATTTCTGTGTGTGAT+AGG | - | chr2_4:47688432-47688451 | Msa0331720:intron | 25.0% |
| !!! | TGCCAACATATTAGTTTTTT+TGG | - | chr2_4:47688532-47688551 | Msa0331720:intron | 25.0% |
| !!! | GCCAACATATTAGTTTTTTT+GGG | - | chr2_4:47688533-47688552 | Msa0331720:intron | 25.0% |
| ! | ACCCAAAAAAACTAATATGT+TGG | + | chr2_4:47688537-47688556 | None:intergenic | 25.0% |
| !!! | TGTTCAAAAAGTATTGAGTT+AGG | - | chr2_4:47688815-47688834 | Msa0331720:intron | 25.0% |
| ! | ACATGATAGGTCTATTTATT+TGG | + | chr2_4:47688936-47688955 | None:intergenic | 25.0% |
| !! | TCAGTTTTCAATTTCCAAAT+CGG | - | chr2_4:47689098-47689117 | Msa0331720:intron | 25.0% |
| !!! | TGTGAGTTTTTAGCAATTTT+TGG | - | chr2_4:47689172-47689191 | Msa0331720:intron | 25.0% |
| !!! | GTGAGTTTTTAGCAATTTTT+GGG | - | chr2_4:47689173-47689192 | Msa0331720:intron | 25.0% |
| ! | CTTCAATAATGCTATAATGA+TGG | + | chr2_4:47689282-47689301 | None:intergenic | 25.0% |
| !! | AAAATCAAGAAAAGAAGCAT+GGG | + | chr2_4:47689644-47689663 | None:intergenic | 25.0% |
| ! | AAAAATCAAGAAAAGAAGCA+TGG | + | chr2_4:47689645-47689664 | None:intergenic | 25.0% |
| !! | CTTTTTAAATATGCAATGTC+TGG | + | chr2_4:47689690-47689709 | None:intergenic | 25.0% |
| ! | TATTTAAAAAGTGATTCGAC+GGG | - | chr2_4:47689699-47689718 | Msa0331720:intron | 25.0% |
| ! | GTACATGCTATATAATTACT+CGG | - | chr2_4:47690295-47690314 | Msa0331720:intron | 25.0% |
| !! | TTGATTATGAGTAAAAGTGT+AGG | - | chr2_4:47690423-47690442 | Msa0331720:intron | 25.0% |
| !!! | AAATGTTTTTCAAGCATTGA+GGG | - | chr2_4:47688312-47688331 | Msa0331720:intron | 25.0% |
| !!! | TTTTTATTTCTGTGTGTGAT+AGG | - | chr2_4:47688432-47688451 | Msa0331720:intron | 25.0% |
| !!! | TGCCAACATATTAGTTTTTT+TGG | - | chr2_4:47688532-47688551 | Msa0331720:intron | 25.0% |
| !!! | GCCAACATATTAGTTTTTTT+GGG | - | chr2_4:47688533-47688552 | Msa0331720:intron | 25.0% |
| ! | ACCCAAAAAAACTAATATGT+TGG | + | chr2_4:47688537-47688556 | None:intergenic | 25.0% |
| !!! | TGTTCAAAAAGTATTGAGTT+AGG | - | chr2_4:47688815-47688834 | Msa0331720:intron | 25.0% |
| ! | ACATGATAGGTCTATTTATT+TGG | + | chr2_4:47688936-47688955 | None:intergenic | 25.0% |
| !! | TCAGTTTTCAATTTCCAAAT+CGG | - | chr2_4:47689098-47689117 | Msa0331720:intron | 25.0% |
| !!! | TGTGAGTTTTTAGCAATTTT+TGG | - | chr2_4:47689172-47689191 | Msa0331720:intron | 25.0% |
| !!! | GTGAGTTTTTAGCAATTTTT+GGG | - | chr2_4:47689173-47689192 | Msa0331720:intron | 25.0% |
| ! | CTTCAATAATGCTATAATGA+TGG | + | chr2_4:47689282-47689301 | None:intergenic | 25.0% |
| !! | AAAATCAAGAAAAGAAGCAT+GGG | + | chr2_4:47689644-47689663 | None:intergenic | 25.0% |
| ! | AAAAATCAAGAAAAGAAGCA+TGG | + | chr2_4:47689645-47689664 | None:intergenic | 25.0% |
| !! | CTTTTTAAATATGCAATGTC+TGG | + | chr2_4:47689690-47689709 | None:intergenic | 25.0% |
| ! | TATTTAAAAAGTGATTCGAC+GGG | - | chr2_4:47689699-47689718 | Msa0331720:intron | 25.0% |
| ! | GTACATGCTATATAATTACT+CGG | - | chr2_4:47690295-47690314 | Msa0331720:intron | 25.0% |
| !! | TTGATTATGAGTAAAAGTGT+AGG | - | chr2_4:47690423-47690442 | Msa0331720:intron | 25.0% |
| !!! | CAAATGTTTTTCAAGCATTG+AGG | - | chr2_4:47688311-47688330 | Msa0331720:intron | 30.0% |
| !!! | TTTTAACTTCTCCCTATTTG+TGG | - | chr2_4:47688487-47688506 | Msa0331720:intron | 30.0% |
| ! | TTTAACTTCTCCCTATTTGT+GGG | - | chr2_4:47688488-47688507 | Msa0331720:intron | 30.0% |
| !!! | TTTTGGCTGTTTTGATGTAT+AGG | - | chr2_4:47688684-47688703 | Msa0331720:intron | 30.0% |
| CTCATCTTTCATTCTTTATG+AGG | - | chr2_4:47688770-47688789 | Msa0331720:intron | 30.0% | |
| TCTTTCATTCTTTATGAGGA+TGG | - | chr2_4:47688774-47688793 | Msa0331720:intron | 30.0% | |
| GTAGAAAAAAATGAACCAAG+AGG | - | chr2_4:47689301-47689320 | Msa0331720:intron | 30.0% | |
| GAGGTTGTAATTTGAGAAAA+TGG | - | chr2_4:47689580-47689599 | Msa0331720:CDS | 30.0% | |
| !!! | ATTTTTTACCAACCCTCTTA+TGG | - | chr2_4:47689659-47689678 | Msa0331720:intron | 30.0% |
| !! | AGTTTTGTCTTTGAGTAGTT+GGG | + | chr2_4:47689864-47689883 | None:intergenic | 30.0% |
| GAAATTCATGTTAGTTAGGT+TGG | - | chr2_4:47690048-47690067 | Msa0331720:intron | 30.0% | |
| TAATTTCATTGCAGGAAGAA+TGG | - | chr2_4:47690224-47690243 | Msa0331720:intron | 30.0% | |
| TCTTGTGTACAAAAGACAAT+TGG | + | chr2_4:47690256-47690275 | None:intergenic | 30.0% | |
| ATGCTATATAATTACTCGGT+GGG | - | chr2_4:47690299-47690318 | Msa0331720:intron | 30.0% | |
| TTATGCTTGAGTAAAAGAGT+AGG | - | chr2_4:47690499-47690518 | Msa0331720:intron | 30.0% | |
| !!! | CAAATGTTTTTCAAGCATTG+AGG | - | chr2_4:47688311-47688330 | Msa0331720:intron | 30.0% |
| !!! | TTTTAACTTCTCCCTATTTG+TGG | - | chr2_4:47688487-47688506 | Msa0331720:intron | 30.0% |
| ! | TTTAACTTCTCCCTATTTGT+GGG | - | chr2_4:47688488-47688507 | Msa0331720:intron | 30.0% |
| !!! | TTTTGGCTGTTTTGATGTAT+AGG | - | chr2_4:47688684-47688703 | Msa0331720:intron | 30.0% |
| CTCATCTTTCATTCTTTATG+AGG | - | chr2_4:47688770-47688789 | Msa0331720:intron | 30.0% | |
| TCTTTCATTCTTTATGAGGA+TGG | - | chr2_4:47688774-47688793 | Msa0331720:intron | 30.0% | |
| GTAGAAAAAAATGAACCAAG+AGG | - | chr2_4:47689301-47689320 | Msa0331720:intron | 30.0% | |
| GAGGTTGTAATTTGAGAAAA+TGG | - | chr2_4:47689580-47689599 | Msa0331720:CDS | 30.0% | |
| !!! | ATTTTTTACCAACCCTCTTA+TGG | - | chr2_4:47689659-47689678 | Msa0331720:intron | 30.0% |
| !! | AGTTTTGTCTTTGAGTAGTT+GGG | + | chr2_4:47689864-47689883 | None:intergenic | 30.0% |
| GAAATTCATGTTAGTTAGGT+TGG | - | chr2_4:47690048-47690067 | Msa0331720:intron | 30.0% | |
| TAATTTCATTGCAGGAAGAA+TGG | - | chr2_4:47690224-47690243 | Msa0331720:intron | 30.0% | |
| TCTTGTGTACAAAAGACAAT+TGG | + | chr2_4:47690256-47690275 | None:intergenic | 30.0% | |
| ATGCTATATAATTACTCGGT+GGG | - | chr2_4:47690299-47690318 | Msa0331720:intron | 30.0% | |
| TTATGCTTGAGTAAAAGAGT+AGG | - | chr2_4:47690499-47690518 | Msa0331720:intron | 30.0% | |
| ATTTCTGTGTGTGATAGGTT+TGG | - | chr2_4:47688437-47688456 | Msa0331720:intron | 35.0% | |
| TTGGTACAATGAATGCATAG+AGG | - | chr2_4:47688456-47688475 | Msa0331720:intron | 35.0% | |
| TACCTCATTTCCCACAAATA+GGG | + | chr2_4:47688501-47688520 | None:intergenic | 35.0% | |
| !!! | TTAGTTTTTTTGGGTGTTGC+TGG | - | chr2_4:47688542-47688561 | Msa0331720:intron | 35.0% |
| !!! | GTTGTGCTTTGGTTTGTTTT+TGG | - | chr2_4:47688568-47688587 | Msa0331720:intron | 35.0% |
| !!! | TTCGGGTAGGTTTTTTTTTC+TGG | - | chr2_4:47688619-47688638 | Msa0331720:intron | 35.0% |
| ! | TGTTGCAGTTGTTGTTATTG+TGG | - | chr2_4:47688659-47688678 | Msa0331720:intron | 35.0% |
| ! | GTTGCAGTTGTTGTTATTGT+GGG | - | chr2_4:47688660-47688679 | Msa0331720:intron | 35.0% |
| ! | TTGCAGTTGTTGTTATTGTG+GGG | - | chr2_4:47688661-47688680 | Msa0331720:intron | 35.0% |
| !! | TTGTTGTTATTGTGGGGTTT+TGG | - | chr2_4:47688667-47688686 | Msa0331720:intron | 35.0% |
| ! | ATGTATAGGCGATTGTGTTT+TGG | - | chr2_4:47688698-47688717 | Msa0331720:intron | 35.0% |
| !! | TCATCATAATTGTGCCGATT+TGG | + | chr2_4:47689115-47689134 | None:intergenic | 35.0% |
| AACCAAGAGGATTTCATAGA+CGG | - | chr2_4:47689314-47689333 | Msa0331720:intron | 35.0% | |
| TCTTACATTCCTTGAAAGGA+TGG | + | chr2_4:47689362-47689381 | None:intergenic | 35.0% | |
| ATCCTTTCAAGGAATGTAAG+AGG | - | chr2_4:47689361-47689380 | Msa0331720:intron | 35.0% | |
| TGTTCCTGTCTACACTTTAT+AGG | - | chr2_4:47689505-47689524 | Msa0331720:CDS | 35.0% | |
| AGAACCTATAAAGTGTAGAC+AGG | + | chr2_4:47689512-47689531 | None:intergenic | 35.0% | |
| AAATCATAATCCAAGACTCG+TGG | + | chr2_4:47689560-47689579 | None:intergenic | 35.0% | |
| GAGTCTTGGATTATGATTTG+AGG | - | chr2_4:47689561-47689580 | Msa0331720:CDS | 35.0% | |
| !! | TTTGATGGACTCAAGTTCTA+TGG | - | chr2_4:47689734-47689753 | Msa0331720:intron | 35.0% |
| ! | AGACGAACACAAAAGTATGT+CGG | + | chr2_4:47689802-47689821 | None:intergenic | 35.0% |
| !! | GAGTTTTGTCTTTGAGTAGT+TGG | + | chr2_4:47689865-47689884 | None:intergenic | 35.0% |
| !! | GGTTTTGTGATTCTGAGAAT+TGG | + | chr2_4:47689887-47689906 | None:intergenic | 35.0% |
| CTCAGAATCACAAAACCAAA+AGG | - | chr2_4:47689890-47689909 | Msa0331720:intron | 35.0% | |
| AACTAACATGAATTTCCTCC+TGG | + | chr2_4:47690044-47690063 | None:intergenic | 35.0% | |
| GGAGGAAATTCATGTTAGTT+AGG | - | chr2_4:47690044-47690063 | Msa0331720:intron | 35.0% | |
| GCACATGTAATTGTGTATCT+AGG | - | chr2_4:47690089-47690108 | Msa0331720:intron | 35.0% | |
| ! | TGTATCTAGGATTGAAAGAG+TGG | - | chr2_4:47690102-47690121 | Msa0331720:intron | 35.0% |
| !!! | TCTTTTTCCTTTTTTTGGGC+TGG | - | chr2_4:47690168-47690187 | Msa0331720:intron | 35.0% |
| ! | TCTTTTGTACACAAGAGAAG+AGG | - | chr2_4:47690260-47690279 | Msa0331720:intron | 35.0% |
| CATGCTATATAATTACTCGG+TGG | - | chr2_4:47690298-47690317 | Msa0331720:intron | 35.0% | |
| ! | TGCTATATAATTACTCGGTG+GGG | - | chr2_4:47690300-47690319 | Msa0331720:intron | 35.0% |
| AATCAGTTTGATGCAGGTTT+AGG | + | chr2_4:47690338-47690357 | None:intergenic | 35.0% | |
| AATTTAATGCCATCTAGCAG+TGG | - | chr2_4:47690372-47690391 | Msa0331720:intron | 35.0% | |
| ATTTCTGTGTGTGATAGGTT+TGG | - | chr2_4:47688437-47688456 | Msa0331720:intron | 35.0% | |
| TTGGTACAATGAATGCATAG+AGG | - | chr2_4:47688456-47688475 | Msa0331720:intron | 35.0% | |
| TACCTCATTTCCCACAAATA+GGG | + | chr2_4:47688501-47688520 | None:intergenic | 35.0% | |
| !!! | TTAGTTTTTTTGGGTGTTGC+TGG | - | chr2_4:47688542-47688561 | Msa0331720:intron | 35.0% |
| !!! | GTTGTGCTTTGGTTTGTTTT+TGG | - | chr2_4:47688568-47688587 | Msa0331720:intron | 35.0% |
| !!! | TTCGGGTAGGTTTTTTTTTC+TGG | - | chr2_4:47688619-47688638 | Msa0331720:intron | 35.0% |
| ! | TGTTGCAGTTGTTGTTATTG+TGG | - | chr2_4:47688659-47688678 | Msa0331720:intron | 35.0% |
| ! | GTTGCAGTTGTTGTTATTGT+GGG | - | chr2_4:47688660-47688679 | Msa0331720:intron | 35.0% |
| ! | TTGCAGTTGTTGTTATTGTG+GGG | - | chr2_4:47688661-47688680 | Msa0331720:intron | 35.0% |
| !! | TTGTTGTTATTGTGGGGTTT+TGG | - | chr2_4:47688667-47688686 | Msa0331720:intron | 35.0% |
| ! | ATGTATAGGCGATTGTGTTT+TGG | - | chr2_4:47688698-47688717 | Msa0331720:intron | 35.0% |
| !! | TCATCATAATTGTGCCGATT+TGG | + | chr2_4:47689115-47689134 | None:intergenic | 35.0% |
| AACCAAGAGGATTTCATAGA+CGG | - | chr2_4:47689314-47689333 | Msa0331720:intron | 35.0% | |
| TCTTACATTCCTTGAAAGGA+TGG | + | chr2_4:47689362-47689381 | None:intergenic | 35.0% | |
| ATCCTTTCAAGGAATGTAAG+AGG | - | chr2_4:47689361-47689380 | Msa0331720:intron | 35.0% | |
| TGTTCCTGTCTACACTTTAT+AGG | - | chr2_4:47689505-47689524 | Msa0331720:CDS | 35.0% | |
| AGAACCTATAAAGTGTAGAC+AGG | + | chr2_4:47689512-47689531 | None:intergenic | 35.0% | |
| AAATCATAATCCAAGACTCG+TGG | + | chr2_4:47689560-47689579 | None:intergenic | 35.0% | |
| GAGTCTTGGATTATGATTTG+AGG | - | chr2_4:47689561-47689580 | Msa0331720:CDS | 35.0% | |
| !! | TTTGATGGACTCAAGTTCTA+TGG | - | chr2_4:47689734-47689753 | Msa0331720:intron | 35.0% |
| ! | AGACGAACACAAAAGTATGT+CGG | + | chr2_4:47689802-47689821 | None:intergenic | 35.0% |
| !! | GAGTTTTGTCTTTGAGTAGT+TGG | + | chr2_4:47689865-47689884 | None:intergenic | 35.0% |
| !! | GGTTTTGTGATTCTGAGAAT+TGG | + | chr2_4:47689887-47689906 | None:intergenic | 35.0% |
| CTCAGAATCACAAAACCAAA+AGG | - | chr2_4:47689890-47689909 | Msa0331720:intron | 35.0% | |
| AACTAACATGAATTTCCTCC+TGG | + | chr2_4:47690044-47690063 | None:intergenic | 35.0% | |
| GGAGGAAATTCATGTTAGTT+AGG | - | chr2_4:47690044-47690063 | Msa0331720:intron | 35.0% | |
| GCACATGTAATTGTGTATCT+AGG | - | chr2_4:47690089-47690108 | Msa0331720:intron | 35.0% | |
| ! | TGTATCTAGGATTGAAAGAG+TGG | - | chr2_4:47690102-47690121 | Msa0331720:intron | 35.0% |
| !!! | TCTTTTTCCTTTTTTTGGGC+TGG | - | chr2_4:47690168-47690187 | Msa0331720:intron | 35.0% |
| ! | TCTTTTGTACACAAGAGAAG+AGG | - | chr2_4:47690260-47690279 | Msa0331720:intron | 35.0% |
| CATGCTATATAATTACTCGG+TGG | - | chr2_4:47690298-47690317 | Msa0331720:intron | 35.0% | |
| ! | TGCTATATAATTACTCGGTG+GGG | - | chr2_4:47690300-47690319 | Msa0331720:intron | 35.0% |
| AATCAGTTTGATGCAGGTTT+AGG | + | chr2_4:47690338-47690357 | None:intergenic | 35.0% | |
| AATTTAATGCCATCTAGCAG+TGG | - | chr2_4:47690372-47690391 | Msa0331720:intron | 35.0% | |
| GTACCTCATTTCCCACAAAT+AGG | + | chr2_4:47688502-47688521 | None:intergenic | 40.0% | |
| !!! | GTGCTTTGGTTTGTTTTTGG+AGG | - | chr2_4:47688571-47688590 | Msa0331720:intron | 40.0% |
| AAAAAAACCTACCCGAACAG+AGG | + | chr2_4:47688616-47688635 | None:intergenic | 40.0% | |
| TTTCATAGACGGAGGATGAA+TGG | - | chr2_4:47689325-47689344 | Msa0331720:intron | 40.0% | |
| AGCCTCTTACATTCCTTGAA+AGG | + | chr2_4:47689366-47689385 | None:intergenic | 40.0% | |
| AGCATGTTCCCAACATGATT+GGG | - | chr2_4:47689401-47689420 | Msa0331720:intron | 40.0% | |
| TCGATGTTCCCAATCATGTT+GGG | + | chr2_4:47689412-47689431 | None:intergenic | 40.0% | |
| TTCGATGTTCCCAATCATGT+TGG | + | chr2_4:47689413-47689432 | None:intergenic | 40.0% | |
| AGAAGAAAAACCACGAGTCT+TGG | - | chr2_4:47689547-47689566 | Msa0331720:CDS | 40.0% | |
| TGTCTGGACTAACCATAAGA+GGG | + | chr2_4:47689674-47689693 | None:intergenic | 40.0% | |
| ATGTCTGGACTAACCATAAG+AGG | + | chr2_4:47689675-47689694 | None:intergenic | 40.0% | |
| TTAAAAAGTGATTCGACGGG+TGG | - | chr2_4:47689702-47689721 | Msa0331720:intron | 40.0% | |
| GGGTGGTATTGTAGATTTGA+TGG | - | chr2_4:47689719-47689738 | Msa0331720:intron | 40.0% | |
| AAGTATGTCGGGGATCAAAT+TGG | + | chr2_4:47689790-47689809 | None:intergenic | 40.0% | |
| ! | ACGAACACAAAAGTATGTCG+GGG | + | chr2_4:47689800-47689819 | None:intergenic | 40.0% |
| ! | GACGAACACAAAAGTATGTC+GGG | + | chr2_4:47689801-47689820 | None:intergenic | 40.0% |
| TCCATCTTCACCTTATTCAC+AGG | - | chr2_4:47689835-47689854 | Msa0331720:intron | 40.0% | |
| ACCTGTGAATAAGGTGAAGA+TGG | + | chr2_4:47689839-47689858 | None:intergenic | 40.0% | |
| ! | TGAGAAGGAATGATGCCTTT+TGG | + | chr2_4:47689908-47689927 | None:intergenic | 40.0% |
| GCAGAAAAATTGCCAAATCC+AGG | - | chr2_4:47690023-47690042 | Msa0331720:intron | 40.0% | |
| GAAAAATTGCCAAATCCAGG+AGG | - | chr2_4:47690026-47690045 | Msa0331720:intron | 40.0% | |
| CATGAATTTCCTCCTGGATT+TGG | + | chr2_4:47690038-47690057 | None:intergenic | 40.0% | |
| AGAATGACCAGCCCAAAAAA+AGG | + | chr2_4:47690178-47690197 | None:intergenic | 40.0% | |
| TTTGTACACAAGAGAAGAGG+TGG | - | chr2_4:47690263-47690282 | Msa0331720:intron | 40.0% | |
| TTGTACACAAGAGAAGAGGT+GGG | - | chr2_4:47690264-47690283 | Msa0331720:intron | 40.0% | |
| ! | TATATAATTACTCGGTGGGG+AGG | - | chr2_4:47690303-47690322 | Msa0331720:intron | 40.0% |
| ! | ATATAATTACTCGGTGGGGA+GGG | - | chr2_4:47690304-47690323 | Msa0331720:intron | 40.0% |
| TTCATGTATCCACTGCTAGA+TGG | + | chr2_4:47690384-47690403 | None:intergenic | 40.0% | |
| ATCTAGCAGTGGATACATGA+AGG | - | chr2_4:47690383-47690402 | Msa0331720:intron | 40.0% | |
| GTACCTCATTTCCCACAAAT+AGG | + | chr2_4:47688502-47688521 | None:intergenic | 40.0% | |
| !!! | GTGCTTTGGTTTGTTTTTGG+AGG | - | chr2_4:47688571-47688590 | Msa0331720:intron | 40.0% |
| AAAAAAACCTACCCGAACAG+AGG | + | chr2_4:47688616-47688635 | None:intergenic | 40.0% | |
| TTTCATAGACGGAGGATGAA+TGG | - | chr2_4:47689325-47689344 | Msa0331720:intron | 40.0% | |
| AGCCTCTTACATTCCTTGAA+AGG | + | chr2_4:47689366-47689385 | None:intergenic | 40.0% | |
| AGCATGTTCCCAACATGATT+GGG | - | chr2_4:47689401-47689420 | Msa0331720:intron | 40.0% | |
| TCGATGTTCCCAATCATGTT+GGG | + | chr2_4:47689412-47689431 | None:intergenic | 40.0% | |
| TTCGATGTTCCCAATCATGT+TGG | + | chr2_4:47689413-47689432 | None:intergenic | 40.0% | |
| AGAAGAAAAACCACGAGTCT+TGG | - | chr2_4:47689547-47689566 | Msa0331720:CDS | 40.0% | |
| TGTCTGGACTAACCATAAGA+GGG | + | chr2_4:47689674-47689693 | None:intergenic | 40.0% | |
| ATGTCTGGACTAACCATAAG+AGG | + | chr2_4:47689675-47689694 | None:intergenic | 40.0% | |
| TTAAAAAGTGATTCGACGGG+TGG | - | chr2_4:47689702-47689721 | Msa0331720:intron | 40.0% | |
| GGGTGGTATTGTAGATTTGA+TGG | - | chr2_4:47689719-47689738 | Msa0331720:intron | 40.0% | |
| AAGTATGTCGGGGATCAAAT+TGG | + | chr2_4:47689790-47689809 | None:intergenic | 40.0% | |
| ! | ACGAACACAAAAGTATGTCG+GGG | + | chr2_4:47689800-47689819 | None:intergenic | 40.0% |
| ! | GACGAACACAAAAGTATGTC+GGG | + | chr2_4:47689801-47689820 | None:intergenic | 40.0% |
| TCCATCTTCACCTTATTCAC+AGG | - | chr2_4:47689835-47689854 | Msa0331720:intron | 40.0% | |
| ACCTGTGAATAAGGTGAAGA+TGG | + | chr2_4:47689839-47689858 | None:intergenic | 40.0% | |
| ! | TGAGAAGGAATGATGCCTTT+TGG | + | chr2_4:47689908-47689927 | None:intergenic | 40.0% |
| GCAGAAAAATTGCCAAATCC+AGG | - | chr2_4:47690023-47690042 | Msa0331720:intron | 40.0% | |
| GAAAAATTGCCAAATCCAGG+AGG | - | chr2_4:47690026-47690045 | Msa0331720:intron | 40.0% | |
| CATGAATTTCCTCCTGGATT+TGG | + | chr2_4:47690038-47690057 | None:intergenic | 40.0% | |
| AGAATGACCAGCCCAAAAAA+AGG | + | chr2_4:47690178-47690197 | None:intergenic | 40.0% | |
| TTTGTACACAAGAGAAGAGG+TGG | - | chr2_4:47690263-47690282 | Msa0331720:intron | 40.0% | |
| TTGTACACAAGAGAAGAGGT+GGG | - | chr2_4:47690264-47690283 | Msa0331720:intron | 40.0% | |
| ! | TATATAATTACTCGGTGGGG+AGG | - | chr2_4:47690303-47690322 | Msa0331720:intron | 40.0% |
| ! | ATATAATTACTCGGTGGGGA+GGG | - | chr2_4:47690304-47690323 | Msa0331720:intron | 40.0% |
| TTCATGTATCCACTGCTAGA+TGG | + | chr2_4:47690384-47690403 | None:intergenic | 40.0% | |
| ATCTAGCAGTGGATACATGA+AGG | - | chr2_4:47690383-47690402 | Msa0331720:intron | 40.0% | |
| CTCCCTATTTGTGGGAAATG+AGG | - | chr2_4:47688496-47688515 | Msa0331720:intron | 45.0% | |
| !!! | GGTTTGTTTTTGGAGGTTCC+AGG | - | chr2_4:47688578-47688597 | Msa0331720:intron | 45.0% |
| ! | TGCTGTGATTTGCCTCTGTT+CGG | - | chr2_4:47688601-47688620 | Msa0331720:CDS | 45.0% |
| !! | AACAGAAAAACAGGGCACTG+CGG | + | chr2_4:47688729-47688748 | None:intergenic | 45.0% |
| CTCCGTCTATGAAATCCTCT+TGG | + | chr2_4:47689319-47689338 | None:intergenic | 45.0% | |
| CAAGAGGATTTCATAGACGG+AGG | - | chr2_4:47689317-47689336 | Msa0331720:intron | 45.0% | |
| GAGCATGTTCCCAACATGAT+TGG | - | chr2_4:47689400-47689419 | Msa0331720:intron | 45.0% | |
| !! | AAGAAGCATGGGAGCATTGA+TGG | + | chr2_4:47689633-47689652 | None:intergenic | 45.0% |
| TGGACTAACCATAAGAGGGT+TGG | + | chr2_4:47689670-47689689 | None:intergenic | 45.0% | |
| AGTTGGGTGACCTGTGAATA+AGG | + | chr2_4:47689848-47689867 | None:intergenic | 45.0% | |
| TGTACACAAGAGAAGAGGTG+GGG | - | chr2_4:47690265-47690284 | Msa0331720:intron | 45.0% | |
| ! | TATAATTACTCGGTGGGGAG+GGG | - | chr2_4:47690305-47690324 | Msa0331720:intron | 45.0% |
| CACTGCAATCAGTTTGATGC+AGG | + | chr2_4:47690344-47690363 | None:intergenic | 45.0% | |
| CTCCCTATTTGTGGGAAATG+AGG | - | chr2_4:47688496-47688515 | Msa0331720:intron | 45.0% | |
| !!! | GGTTTGTTTTTGGAGGTTCC+AGG | - | chr2_4:47688578-47688597 | Msa0331720:intron | 45.0% |
| ! | TGCTGTGATTTGCCTCTGTT+CGG | - | chr2_4:47688601-47688620 | Msa0331720:CDS | 45.0% |
| !! | AACAGAAAAACAGGGCACTG+CGG | + | chr2_4:47688729-47688748 | None:intergenic | 45.0% |
| CTCCGTCTATGAAATCCTCT+TGG | + | chr2_4:47689319-47689338 | None:intergenic | 45.0% | |
| CAAGAGGATTTCATAGACGG+AGG | - | chr2_4:47689317-47689336 | Msa0331720:intron | 45.0% | |
| GAGCATGTTCCCAACATGAT+TGG | - | chr2_4:47689400-47689419 | Msa0331720:intron | 45.0% | |
| !! | AAGAAGCATGGGAGCATTGA+TGG | + | chr2_4:47689633-47689652 | None:intergenic | 45.0% |
| TGGACTAACCATAAGAGGGT+TGG | + | chr2_4:47689670-47689689 | None:intergenic | 45.0% | |
| AGTTGGGTGACCTGTGAATA+AGG | + | chr2_4:47689848-47689867 | None:intergenic | 45.0% | |
| TGTACACAAGAGAAGAGGTG+GGG | - | chr2_4:47690265-47690284 | Msa0331720:intron | 45.0% | |
| ! | TATAATTACTCGGTGGGGAG+GGG | - | chr2_4:47690305-47690324 | Msa0331720:intron | 45.0% |
| CACTGCAATCAGTTTGATGC+AGG | + | chr2_4:47690344-47690363 | None:intergenic | 45.0% | |
| !! | GAAAAAATTAATATTAAAAA+GGG | + | chr2_4:47688380-47688399 | None:intergenic | 5.0% |
| !! | AGAAAAAATTAATATTAAAA+AGG | + | chr2_4:47688381-47688400 | None:intergenic | 5.0% |
| !! | GAAAAAATTAATATTAAAAA+GGG | + | chr2_4:47688380-47688399 | None:intergenic | 5.0% |
| !! | AGAAAAAATTAATATTAAAA+AGG | + | chr2_4:47688381-47688400 | None:intergenic | 5.0% |
| GTTGCTGGTGTGTTGTGCTT+TGG | - | chr2_4:47688557-47688576 | Msa0331720:intron | 50.0% | |
| ! | GCTGTGATTTGCCTCTGTTC+GGG | - | chr2_4:47688602-47688621 | Msa0331720:CDS | 50.0% |
| ! | TGATTTGCCTCTGTTCGGGT+AGG | - | chr2_4:47688606-47688625 | Msa0331720:CDS | 50.0% |
| ATGTCGCTGCCATCCTTTCA+AGG | - | chr2_4:47689350-47689369 | Msa0331720:intron | 50.0% | |
| GTTGCTGGTGTGTTGTGCTT+TGG | - | chr2_4:47688557-47688576 | Msa0331720:intron | 50.0% | |
| ! | GCTGTGATTTGCCTCTGTTC+GGG | - | chr2_4:47688602-47688621 | Msa0331720:CDS | 50.0% |
| ! | TGATTTGCCTCTGTTCGGGT+AGG | - | chr2_4:47688606-47688625 | Msa0331720:CDS | 50.0% |
| ATGTCGCTGCCATCCTTTCA+AGG | - | chr2_4:47689350-47689369 | Msa0331720:intron | 50.0% | |
| CAGAGGCAAATCACAGCACC+TGG | + | chr2_4:47688599-47688618 | None:intergenic | 55.0% | |
| !! | AAAAACAGGGCACTGCGGCT+AGG | + | chr2_4:47688724-47688743 | None:intergenic | 55.0% |
| CAGAGGCAAATCACAGCACC+TGG | + | chr2_4:47688599-47688618 | None:intergenic | 55.0% | |
| !! | AAAAACAGGGCACTGCGGCT+AGG | + | chr2_4:47688724-47688743 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47688295 | 47690580 | 47688295 | ID=Msa0331720;Name=Msa0331720 |
| chr2_4 | mRNA | 47688295 | 47690580 | 47688295 | ID=Msa0331720-mRNA-1;Parent=Msa0331720;Name=Msa0331720-mRNA-1;_AED=0.49;_eAED=0.50;_QI=0|0|0.2|0.8|0|0|5|0|78 |
| chr2_4 | exon | 47690577 | 47690580 | 47690577 | ID=Msa0331720-mRNA-1:exon:14392;Parent=Msa0331720-mRNA-1 |
| chr2_4 | exon | 47689500 | 47689612 | 47689500 | ID=Msa0331720-mRNA-1:exon:14391;Parent=Msa0331720-mRNA-1 |
| chr2_4 | exon | 47688819 | 47688848 | 47688819 | ID=Msa0331720-mRNA-1:exon:14390;Parent=Msa0331720-mRNA-1 |
| chr2_4 | exon | 47688581 | 47688637 | 47688581 | ID=Msa0331720-mRNA-1:exon:14389;Parent=Msa0331720-mRNA-1 |
| chr2_4 | exon | 47688295 | 47688327 | 47688295 | ID=Msa0331720-mRNA-1:exon:14388;Parent=Msa0331720-mRNA-1 |
| chr2_4 | CDS | 47690577 | 47690580 | 47690577 | ID=Msa0331720-mRNA-1:cds;Parent=Msa0331720-mRNA-1 |
| chr2_4 | CDS | 47689500 | 47689612 | 47689500 | ID=Msa0331720-mRNA-1:cds;Parent=Msa0331720-mRNA-1 |
| chr2_4 | CDS | 47688819 | 47688848 | 47688819 | ID=Msa0331720-mRNA-1:cds;Parent=Msa0331720-mRNA-1 |
| chr2_4 | CDS | 47688581 | 47688637 | 47688581 | ID=Msa0331720-mRNA-1:cds;Parent=Msa0331720-mRNA-1 |
| chr2_4 | CDS | 47688295 | 47688327 | 47688295 | ID=Msa0331720-mRNA-1:cds;Parent=Msa0331720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
