AlfalfaGEDB | Msa1204980

M. sativa cultivar zhongmu-4 / Msa1204980

KEGG: K03097
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0023052 GO:0031974 GO:0031981 GO:0040008 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070013 GO:2000026 GO:2000028 GO:2000241
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204980	sp\|O64816\|CSK2P_ARATH	85.756	344	29	1	74	397	85	428	0.0	578

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204980	A0A072UNW2	94.048	420	4	2	1	400	1	419	0.0	809

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1204980	0.810979	8.802634e-51	-8.615850e-47
Msa0006700	Msa1204980	-0.860138	2.545620e-63	-8.615850e-47
Msa0007080	Msa1204980	-0.804711	1.894528e-49	-8.615850e-47
Msa0008850	Msa1204980	-0.825967	3.510866e-54	-8.615850e-47
Msa0011720	Msa1204980	-0.816309	5.910416e-52	-8.615850e-47
Msa0012780	Msa1204980	0.814511	1.484423e-51	-8.615850e-47
Msa0013050	Msa1204980	0.844543	7.085196e-59	-8.615850e-47
Msa0014410	Msa1204980	-0.831945	1.251538e-55	-8.615850e-47
Msa0015100	Msa1204980	-0.834642	2.663942e-56	-8.615850e-47
Msa0020630	Msa1204980	-0.873323	1.607882e-67	-8.615850e-47

Showing 1 to 10 of 1,003 entries

Previous1 2 3 4 5…101Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204980	MtrunA17_Chr4g0053951	94.048	420	4	2	1	400	1	419	0.0	809
Msa1204980	MtrunA17_Chr5g0401371	79.827	347	50	1	74	400	68	414	0.0	571
Msa1204980	MtrunA17_Chr4g0053821	75.623	361	64	2	64	400	28	388	0.0	532
Msa1204980	MtrunA17_Chr1g0187371	28.746	327	166	11	109	389	6	311	1.71e-37	138
Msa1204980	MtrunA17_Chr4g0002001	27.950	322	164	9	119	389	2	306	8.25e-36	133
Msa1204980	MtrunA17_Chr8g0350311	30.671	313	160	12	121	395	139	432	4.85e-35	134
Msa1204980	MtrunA17_Chr2g0293491	30.392	306	169	9	118	392	1	293	2.17e-34	129
Msa1204980	MtrunA17_Chr8g0358921	28.616	318	176	9	119	399	45	348	7.14e-33	126
Msa1204980	MtrunA17_Chr4g0051261	29.836	305	170	9	119	392	2	293	1.29e-32	124
Msa1204980	MtrunA17_Chr2g0320011	29.180	305	167	10	120	390	87	376	1.68e-32	127

Showing 1 to 10 of 118 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204980	AT2G23070.1	85.756	344	29	1	74	397	85	428	0.0	578
Msa1204980	AT5G67380.1	79.042	334	50	1	87	400	76	409	0.0	523
Msa1204980	AT3G50000.1	79.518	332	48	1	89	400	72	403	0.0	522
Msa1204980	AT2G23080.1	77.039	331	56	1	89	399	2	332	7.25e-178	498
Msa1204980	AT5G67380.2	71.257	334	43	2	87	400	76	376	2.56e-174	491
Msa1204980	AT2G23080.2	77.778	297	46	1	89	365	2	298	8.51e-157	444
Msa1204980	AT2G38620.2	29.268	328	152	10	119	389	2	306	4.04e-37	137
Msa1204980	AT3G54180.1	28.834	326	154	10	119	389	2	304	5.92e-36	134
Msa1204980	AT1G20930.1	29.618	314	160	12	119	389	14	309	6.17e-36	134
Msa1204980	AT3G48750.1	30.464	302	166	10	119	389	2	290	1.33e-35	132

Showing 1 to 10 of 264 entries

Previous1 2 3 4 5…27Next

Find 137 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTACAGAATCTTTG+TGG	0.454458	8_1:+60950419	Msa1204980:CDS
AAACCCTCACCGTTCAGTGG+GGG	0.687592	8_1:+60948529	Msa1204980:CDS
AAATGGTTGTTCGGCGGTGA+CGG	0.488819	8_1:-60948360	None:intergenic
AAATTTGCTGCTTACCATCC+CGG	0.491733	8_1:-60952635	None:intergenic
AAGAAAGAGAGAAAAGATTT+GGG	0.292694	8_1:-60948312	None:intergenic
AAGATGATTATGAGGTGGTG+AGG	0.574125	8_1:+60948687	Msa1204980:CDS
AAGCTTCGCCTTATAGATTG+GGG	0.553750	8_1:+60951674	Msa1204980:CDS
AATATTAATGCAGATCAAGA+GGG	0.616701	8_1:+60950391	Msa1204980:intron
AATCGGAAACCAAAGGCAAT+AGG	0.350752	8_1:-60954683	None:intergenic
AATCTAAAACTAACATTCGT+TGG	0.430858	8_1:-60954840	None:intergenic

Showing 1 to 10 of 137 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAAATGGAAAATGGGTCAA+GGG	-	chr8_1:60948186-60948205	None:intergenic	30.0%
AGAAAGAGAGAAAAGATTTG+GGG	-	chr8_1:60948314-60948333	None:intergenic	30.0%
GAAGAAAGAGAGAAAAGATT+TGG	-	chr8_1:60948316-60948335	None:intergenic	30.0%
CATAGCTGATAAATGATGAT+AGG	+	chr8_1:60948891-60948910	Msa1204980:intron	30.0%
ATGAGTATGCTAGAAATTTC+AGG	-	chr8_1:60949059-60949078	None:intergenic	30.0%
TATGTCATGCTACTCTAAAT+TGG	-	chr8_1:60949263-60949282	None:intergenic	30.0%
ATGATGTGTATAATCCGTAA+TGG	-	chr8_1:60949346-60949365	None:intergenic	30.0%
CTCTTGAATTTCATATGCAA+AGG	+	chr8_1:60949852-60949871	Msa1204980:intron	30.0%
CATTTATCATCAAGTTACCA+TGG	-	chr8_1:60949942-60949961	None:intergenic	30.0%
AAAATAGAAAATGTCGTGCT+GGG	+	chr8_1:60950101-60950120	Msa1204980:intron	30.0%

Showing 1 to 10 of 461 entries

Previous1 2 3 4 5…47Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	60948072	60954906	60948072	ID=Msa1204980;Name=Msa1204980
chr8_1	mRNA	60948072	60954906	60948072	ID=Msa1204980-mRNA-1;Parent=Msa1204980;Name=Msa1204980-mRNA-1;_AED=0.15;_eAED=0.15;_QI=132\|0.88\|0.9\|1\|0.88\|0.8\|10\|355\|400
chr8_1	exon	60948072	60948550	60948072	ID=Msa1204980-mRNA-1:exon:19784;Parent=Msa1204980-mRNA-1
chr8_1	exon	60948682	60948811	60948682	ID=Msa1204980-mRNA-1:exon:19785;Parent=Msa1204980-mRNA-1
chr8_1	exon	60950404	60950538	60950404	ID=Msa1204980-mRNA-1:exon:19786;Parent=Msa1204980-mRNA-1
chr8_1	exon	60951593	60951750	60951593	ID=Msa1204980-mRNA-1:exon:19787;Parent=Msa1204980-mRNA-1
chr8_1	exon	60952552	60952642	60952552	ID=Msa1204980-mRNA-1:exon:19788;Parent=Msa1204980-mRNA-1
chr8_1	exon	60952825	60952890	60952825	ID=Msa1204980-mRNA-1:exon:19789;Parent=Msa1204980-mRNA-1
chr8_1	exon	60953314	60953396	60953314	ID=Msa1204980-mRNA-1:exon:19790;Parent=Msa1204980-mRNA-1
chr8_1	exon	60953498	60953561	60953498	ID=Msa1204980-mRNA-1:exon:19791;Parent=Msa1204980-mRNA-1
chr8_1	exon	60953636	60953704	60953636	ID=Msa1204980-mRNA-1:exon:19792;Parent=Msa1204980-mRNA-1
chr8_1	exon	60954492	60954906	60954492	ID=Msa1204980-mRNA-1:exon:19793;Parent=Msa1204980-mRNA-1
chr8_1	five_prime_UTR	60948072	60948203	60948072	ID=Msa1204980-mRNA-1:five_prime_utr;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60948204	60948550	60948204	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60948682	60948811	60948682	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60950404	60950538	60950404	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60951593	60951750	60951593	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60952552	60952642	60952552	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60952825	60952890	60952825	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60953314	60953396	60953314	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60953498	60953561	60953498	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60953636	60953704	60953636	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	CDS	60954492	60954551	60954492	ID=Msa1204980-mRNA-1:cds;Parent=Msa1204980-mRNA-1
chr8_1	three_prime_UTR	60954552	60954906	60954552	ID=Msa1204980-mRNA-1:three_prime_utr;Parent=Msa1204980-mRNA-1

Gene Sequence

>Msa1204980

ATGGCCGTAAAACATTTGCAATTCCAATTCAACTTGTCGCGCGATAGATTGGTCTTTCTCTTTCGAACATCTCAATCTCATTCTTTATTTCCTTATAATAATAAATTCCCCAAATCTTTTCTCTCTTTCTTCCTCCGCCGCTCCTCCTCAACAACTCCGTCACCGCCGAACAACCATTTCCGCCGTCCGCGGCCTCCTCCTCCTCGTCCACCCGTCGACATGGCGCAGAAATTCGGAAAATCCACTCGCCGCCCCGGCGCTGCATCCAAGGCTAGGGTTTATGCTGATGTCAACGTCGTTCGTCCTAAGGAATATTGGGATTACGAAACCCTCACCGTTCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGGAAAGTGGGAAGGGGGAAATACAGTGAGGTTTTTGAAGGTGTTCATTGTACTGATAATGAAAAATGTGTTATCAAGATTCTCAAACCTGTTAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCAAGTCTCATATTTGAATATGTCAACAACACTGATTTTAAAGCATTGGATTATTGCCATTCGCAAGGGATTATGCATCGGGATGTGAAGCCCCATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAGGAATATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGCCCAGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCCGGGATGATATTCCGGAAGGAGCCGTTCTTTTATGGTCACGATAACTATGATCAACTGGTCAAGATAGCCAGGGTACTTGGGACGGATGAATTAAATACATATTTGAATAAGTATCGCATTGAGTTGGACCCACATTTTGCAGCACTTATTGGGAGGCATAGCAGGAAGCCATGGCAAAGGTTCATTAATGTTGAAAATCAACACTTGACTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTACGATACGATCACCAAGAACGGCCCACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAATTAGAAATGTGGAAAGTAGCAGAGCTCGTGCACATTGA

Protein sequence

>Msa1204980

MAVKHLQFQFNLSRDRLVFLFRTSQSHSLFPYNNKFPKSFLSFFLRRSSSTTPSPPNNHFRRPRPPPPRPPVDMAQKFGKSTRRPGAASKARVYADVNVVRPKEYWDYETLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIARVLGTDELNTYLNKYRIELDPHFAALIGRHSRKPWQRFINVENQHLTVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPIRNVESSRARAH*