AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0254930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0254930 MtrunA17_Chr2g0315531 96.610 472 14 1 4 473 1 472 0.0 941
Msa0254930 MtrunA17_Chr8g0359791 66.000 400 121 7 70 465 32 420 7.33e-178 504
Msa0254930 MtrunA17_Chr8g0379551 46.004 463 235 7 1 453 14 471 5.13e-128 380
Msa0254930 MtrunA17_Chr4g0011611 41.795 390 209 5 71 453 34 412 5.83e-100 306
Msa0254930 MtrunA17_Chr7g0230481 32.242 397 244 5 69 453 139 522 1.31e-58 201
Msa0254930 MtrunA17_Chr3g0103691 31.172 401 249 9 73 457 92 481 1.76e-51 181
Msa0254930 MtrunA17_Chr5g0432511 31.139 395 230 9 86 473 33 392 1.82e-50 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0254930 AT1G53380.2 52.941 459 201 7 1 453 1 450 4.91e-169 484
Msa0254930 AT1G53380.4 52.941 459 201 7 1 453 1 450 4.91e-169 484
Msa0254930 AT1G53380.1 52.941 459 201 7 1 453 1 450 4.91e-169 484
Msa0254930 AT1G53380.3 52.941 459 201 7 1 453 1 450 4.91e-169 484
Msa0254930 AT1G53380.5 52.941 459 201 7 1 453 1 450 4.91e-169 484
Msa0254930 AT3G14870.4 50.858 466 211 5 1 453 1 461 1.83e-165 475
Msa0254930 AT3G14870.5 50.858 466 211 5 1 453 1 461 1.83e-165 475
Msa0254930 AT3G14870.2 50.858 466 211 5 1 453 1 461 1.83e-165 475
Msa0254930 AT3G14870.3 50.858 466 211 5 1 453 2 462 2.36e-165 475
Msa0254930 AT3G14870.1 50.858 466 211 5 1 453 5 465 2.61e-165 475
Msa0254930 AT1G29300.1 42.678 478 230 9 1 457 1 455 1.24e-112 340
Msa0254930 AT2G45260.1 40.852 399 223 3 62 453 26 418 4.90e-102 312
Msa0254930 AT3G60680.1 33.247 385 241 4 74 453 120 493 6.18e-61 207
Msa0254930 AT4G34080.1 37.143 280 169 2 62 334 2 281 3.41e-56 188
Msa0254930 AT2G30380.1 33.069 378 210 4 76 453 76 410 4.91e-54 187
Msa0254930 AT4G33320.1 35.315 286 177 3 62 339 2 287 6.09e-50 172
Msa0254930 AT5G58960.2 29.056 413 249 8 73 456 86 483 1.68e-47 171
Msa0254930 AT5G58960.3 29.056 413 249 8 73 456 86 483 1.68e-47 171
Msa0254930 AT5G58960.1 29.056 413 249 8 73 456 161 558 5.72e-47 171
Msa0254930 AT2G32130.1 45.161 124 68 0 73 196 34 157 7.26e-27 106
Msa0254930 AT4G36100.1 45.098 102 53 1 62 160 2 103 2.48e-20 90.5

Find 115 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGAGTCAGTTATTT+TGG 0.074345 2_2:-48457168 None:intergenic
GCCTAATATCAATACAATTT+TGG 0.077216 2_2:-48456969 None:intergenic
GCTAGCATTTCAACTGTTAA+AGG 0.156700 2_2:+48455399 Msa0254930:CDS
AGAAAATGGGTCAGTTATTC+CGG 0.254483 2_2:-48457132 None:intergenic
TCCATGTTTGTTTCATCCTT+TGG 0.256313 2_2:-48455273 None:intergenic
CCCAAAATTGTATTGATATT+AGG 0.269358 2_2:+48456968 Msa0254930:three_prime_UTR
TCATTTGGAAGATTGAAATT+AGG 0.272865 2_2:-48456005 None:intergenic
GATAATGTTGTTCACATATC+AGG 0.291769 2_2:+48455765 Msa0254930:CDS
ATTTAGTGTTATATTGTATT+GGG 0.297084 2_2:-48457214 None:intergenic
TTTCTATAAGCAAATGTAAA+AGG 0.307592 2_2:+48456727 Msa0254930:three_prime_UTR
ATGTCCTTCCCTTGTGTTGT+AGG 0.319600 2_2:-48456773 None:intergenic
TATTTAGTGTTATATTGTAT+TGG 0.323817 2_2:-48457215 None:intergenic
CATGGCATGGAGTGAACTTT+TGG 0.326286 2_2:+48456793 Msa0254930:three_prime_UTR
AGCTGAATCGAAGGAGATAA+AGG 0.344297 2_2:+48455581 Msa0254930:CDS
ATGAAATGAGATCTGCAAAA+TGG 0.347278 2_2:+48455865 Msa0254930:CDS
TTCCTAGCTAATTTCTTGCT+TGG 0.369258 2_2:-48455189 None:intergenic
TCTTAGCCGTCGATCTAAAT+CGG 0.369940 2_2:+48456644 Msa0254930:three_prime_UTR
AAAAGTGGAATATATTGTAT+TGG 0.389960 2_2:-48457256 None:intergenic
GAGAAAGAGAGAATAAAAGC+AGG 0.390355 2_2:-48451507 None:intergenic
TCATCAGAAAGTGCCTCATT+TGG 0.395734 2_2:-48456020 None:intergenic
GACGAAGAACAGTAGCAAAA+TGG 0.401046 2_2:-48455800 None:intergenic
GATTAACTCCTGTGTGAAAT+CGG 0.402654 2_2:-48456560 None:intergenic
AAAGTGGAATATATTGTATT+GGG 0.405398 2_2:-48457255 None:intergenic
GAAATCTTTCAAGTGGGAAA+AGG 0.412349 2_2:+48456335 Msa0254930:CDS
AATTGTTGCAGGACCGCGTT+TGG 0.416860 2_2:+48452264 Msa0254930:intron
TCAGAAGCTTCAATTCCATC+AGG 0.419938 2_2:-48455462 None:intergenic
GAATCATATATAATATAGTT+AGG 0.423631 2_2:+48457060 Msa0254930:three_prime_UTR
TTGCTTGGTGTCACTGCTGA+AGG 0.427239 2_2:-48455174 None:intergenic
GTTTCTTAAAGAGAAATTAG+TGG 0.430754 2_2:+48455677 Msa0254930:CDS
TCAGAAGAAGAACCAGTTGT+TGG 0.431414 2_2:+48456434 Msa0254930:CDS
AATTGCGCAAACGATGATCT+TGG 0.434932 2_2:-48456125 None:intergenic
GAAACTCTCCACCACTCAAA+AGG 0.448344 2_2:-48456223 None:intergenic
TGTCCTTCCCTTGTGTTGTA+GGG 0.453529 2_2:-48456772 None:intergenic
AGAGTAGTAACATAGATAAG+TGG 0.456069 2_2:-48451637 None:intergenic
GAGTAGTAACATAGATAAGT+GGG 0.457277 2_2:-48451636 None:intergenic
ATATTATATCATGCAATGTC+TGG 0.464188 2_2:-48457028 None:intergenic
GTAAAAGGAGATTTGTGGTC+AGG 0.467104 2_2:+48456742 Msa0254930:three_prime_UTR
GAAAATGGGTCAGTTATTCC+GGG 0.468412 2_2:-48457131 None:intergenic
CATCGTTTGCGCAATTCTGC+AGG 0.469810 2_2:+48456132 Msa0254930:CDS
TAATTTCAATCTTCCAAATG+AGG 0.473527 2_2:+48456007 Msa0254930:CDS
TGCTCTAAGATGAAGAACTT+TGG 0.476082 2_2:-48455217 None:intergenic
TGCGAAGAAGTTGGAATCAC+AGG 0.477263 2_2:+48455629 Msa0254930:CDS
AGCTTGAACCTCAAAAGAAA+AGG 0.479323 2_2:-48456312 None:intergenic
CAACACAAGTAGTTCGGATT+CGG 0.488827 2_2:+48451428 None:intergenic
AGCTAGTGGGACCATAGCAT+TGG 0.490242 2_2:+48456869 Msa0254930:three_prime_UTR
GTAAGCCAACACAAGTAGTT+CGG 0.493901 2_2:+48451422 None:intergenic
TGTTCTGAGGTTTAGAAAAG+TGG 0.494945 2_2:-48451686 None:intergenic
AAATCTTTCAAGTGGGAAAA+GGG 0.495316 2_2:+48456336 Msa0254930:CDS
ACAACATAGAATCCATTTCA+AGG 0.496599 2_2:+48456689 Msa0254930:three_prime_UTR
TCAATGTTTGCTCTGTTCTG+AGG 0.496959 2_2:-48451699 None:intergenic
CGAGATTACTGCGAAGAAGT+TGG 0.497474 2_2:+48455620 Msa0254930:CDS
TCAATTCCATCAGGGTCAAA+AGG 0.497708 2_2:-48455453 None:intergenic
TAAAATAGCCAAAACACAAA+AGG 0.498057 2_2:-48456831 None:intergenic
GCTGCGAGTATCGCTTTCTC+TGG 0.498611 2_2:-48455561 None:intergenic
GACACAGCTGGAAGTGAGAA+AGG 0.502027 2_2:-48451578 None:intergenic
ATGAAGAGATTGAAGAACAA+AGG 0.502913 2_2:+48455343 Msa0254930:CDS
AGAAAGAGAGAATAAAAGCA+GGG 0.503857 2_2:-48451506 None:intergenic
ATTGATATTAGGCCGGTGAC+AGG 0.504472 2_2:+48456979 Msa0254930:three_prime_UTR
ACAACAGTAAAACCAACAAC+TGG 0.508318 2_2:-48456446 None:intergenic
TGAAATGAGATCTGCAAAAT+GGG 0.517744 2_2:+48455866 Msa0254930:CDS
AGAAGTTGGAATCACAGGTT+AGG 0.521372 2_2:+48455634 Msa0254930:CDS
TGAGTAGAAGTGTGTGATGA+AGG 0.521621 2_2:-48451729 None:intergenic
GTATTATACTCCCTCCGTCC+CGG 0.529006 2_2:+48457113 Msa0254930:three_prime_UTR
TTGATATTAGGCCGGTGACA+GGG 0.531815 2_2:+48456980 Msa0254930:three_prime_UTR
GCTGAATCGAAGGAGATAAA+GGG 0.535338 2_2:+48455582 Msa0254930:CDS
CTTAGCCGTCGATCTAAATC+GGG 0.535991 2_2:+48456645 Msa0254930:three_prime_UTR
GCTAGTGGGACCATAGCATT+GGG 0.540918 2_2:+48456870 Msa0254930:three_prime_UTR
AAATGATGAGGAGAAATTGA+AGG 0.550074 2_2:-48452380 None:intergenic
TCATTTGTGTATCCACCAAA+GGG 0.550796 2_2:+48451599 Msa0254930:five_prime_UTR
AGCTAGACCACCCCTGTCAC+CGG 0.551001 2_2:-48456991 None:intergenic
TGGAAAAGACTACAATAACT+TGG 0.552801 2_2:+48455292 Msa0254930:CDS
GTCAGTTATTCCGGGACGGA+GGG 0.558569 2_2:-48457123 None:intergenic
GTCATTTGTGTATCCACCAA+AGG 0.558935 2_2:+48451598 Msa0254930:five_prime_UTR
GGATACACAAATGACACAGC+TGG 0.559609 2_2:-48451590 None:intergenic
AAATTGTATTGATATTAGGC+CGG 0.563272 2_2:+48456972 Msa0254930:three_prime_UTR
AAGAATCACATCAAGGTGAA+AGG 0.566762 2_2:+48456524 Msa0254930:CDS
AAAGGTTGTTCCCAATGCTA+TGG 0.567458 2_2:-48456880 None:intergenic
TCAAGCTGAAATCTTTCAAG+TGG 0.572316 2_2:+48456328 Msa0254930:CDS
AAGGTGAAAGGATCGCGTGC+TGG 0.574947 2_2:+48456536 Msa0254930:CDS
CACAAGGGAAGGACATGGCA+TGG 0.575353 2_2:+48456780 Msa0254930:three_prime_UTR
ATAACAAGTTGATTGAGAAG+AGG 0.576898 2_2:+48455712 Msa0254930:CDS
TGATATTAGGCCGGTGACAG+GGG 0.580443 2_2:+48456981 Msa0254930:three_prime_UTR
CAAATGTAAAAGGAGATTTG+TGG 0.587350 2_2:+48456737 Msa0254930:three_prime_UTR
CTTCTTCGCAGTAATCTCGT+AGG 0.589891 2_2:-48455616 None:intergenic
GAGAAGAGGTTGAATCAAAG+TGG 0.590872 2_2:+48455726 Msa0254930:CDS
AGTAGTAACATAGATAAGTG+GGG 0.591109 2_2:-48451635 None:intergenic
GGTCAGTTATTCCGGGACGG+AGG 0.593751 2_2:-48457124 None:intergenic
ACTTCTACTCATAGTCATTG+AGG 0.593987 2_2:+48451741 Msa0254930:five_prime_UTR
GAAAGAGAGAATAAAAGCAG+GGG 0.596993 2_2:-48451505 None:intergenic
ATCATCGATTCGAGATCAGA+CGG 0.598111 2_2:+48456586 Msa0254930:three_prime_UTR
CAAGCTGAAATCTTTCAAGT+GGG 0.598623 2_2:+48456329 Msa0254930:CDS
TCCAAAGGATGAAACAAACA+TGG 0.604906 2_2:+48455272 Msa0254930:CDS
GATACTCGCAGCTGAATCGA+AGG 0.611880 2_2:+48455572 Msa0254930:CDS
CGATGCTATTGAACATAATG+TGG 0.612500 2_2:+48455905 Msa0254930:CDS
CAGAAGCTTCAATTCCATCA+GGG 0.612641 2_2:-48455461 None:intergenic
AGTATCGCTTTCTCTGGTGA+AGG 0.613880 2_2:-48455555 None:intergenic
TGCTACTGTTCTTCGTCACG+CGG 0.615594 2_2:+48455806 Msa0254930:CDS
TATATCTGATACAAATCCAA+AGG 0.615715 2_2:+48455257 Msa0254930:CDS
TGATGTGATTCTTCTGCATG+AGG 0.623145 2_2:-48456514 None:intergenic
TATTAGGCCGGTGACAGGGG+TGG 0.625854 2_2:+48456984 Msa0254930:three_prime_UTR
CATGCAGAAGAATCACATCA+AGG 0.633754 2_2:+48456517 Msa0254930:CDS
GTAGTAACATAGATAAGTGG+GGG 0.635429 2_2:-48451634 None:intergenic
ATGGGTCAGTTATTCCGGGA+CGG 0.635699 2_2:-48457127 None:intergenic
CACCAAGCAAGAAATTAGCT+AGG 0.637970 2_2:+48455187 Msa0254930:CDS
AGAACAGTAGCAAAATGGCT+AGG 0.639681 2_2:-48455795 None:intergenic
GTGCCCTACAACACAAGGGA+AGG 0.641725 2_2:+48456769 Msa0254930:three_prime_UTR
TACAACCCGATTTAGATCGA+CGG 0.641967 2_2:-48456650 None:intergenic
GTAATGTGCCCTACAACACA+AGG 0.646598 2_2:+48456764 Msa0254930:three_prime_UTR
TATGTTGTAACTGTGTCGCA+TGG 0.648760 2_2:-48456674 None:intergenic
ATTGAAGGTGAAGTTGAATG+TGG 0.648761 2_2:-48452365 None:intergenic
GAGTAGAAGTGTGTGATGAA+GGG 0.654118 2_2:-48451728 None:intergenic
GTGCTGGTCCGATTTCACAC+AGG 0.697518 2_2:+48456552 Msa0254930:CDS
TACAACACAAGGGAAGGACA+TGG 0.699467 2_2:+48456775 Msa0254930:three_prime_UTR
TGTTGTTCTAACACCAAACG+CGG 0.717628 2_2:-48452277 None:intergenic
TAATGTGCCCTACAACACAA+GGG 0.747709 2_2:+48456765 Msa0254930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATATATAAATATT+TGG + chr2_2:48452205-48452224 Msa0254930:intron 0.0%
!!! TTTGTTTTATAAAAAGATAA+AGG - chr2_2:48451805-48451824 None:intergenic 10.0%
!!! TTTTGTATAATAAAAAATGT+GGG - chr2_2:48452875-48452894 None:intergenic 10.0%
!!! ATTTTGTATAATAAAAAATG+TGG - chr2_2:48452876-48452895 None:intergenic 10.0%
!! AAAAGATAAAGGAAAAAATT+GGG - chr2_2:48451794-48451813 None:intergenic 15.0%
!! AAAAAGATAAAGGAAAAAAT+TGG - chr2_2:48451795-48451814 None:intergenic 15.0%
!!! TTTTTTTTATTATCTTCTGT+AGG + chr2_2:48451922-48451941 Msa0254930:intron 15.0%
!! ATACTAACAATGAAAATAAA+GGG - chr2_2:48452148-48452167 None:intergenic 15.0%
!! AATACTAACAATGAAAATAA+AGG - chr2_2:48452149-48452168 None:intergenic 15.0%
!!! AACTATTATTACTACATTTT+AGG + chr2_2:48452552-48452571 Msa0254930:intron 15.0%
!!! AAATTTGCAATGTTTATTTT+AGG + chr2_2:48452604-48452623 Msa0254930:intron 15.0%
!!! TTTTATCATAAACCATATTT+CGG + chr2_2:48453457-48453476 Msa0254930:intron 15.0%
!! ATATATTTATCACAAATACA+AGG - chr2_2:48453577-48453596 None:intergenic 15.0%
!! TAGACATTATTGTAAATTTA+TGG - chr2_2:48454090-48454109 None:intergenic 15.0%
!! ATAAATTTACAATAATGTCT+AGG + chr2_2:48454089-48454108 Msa0254930:intron 15.0%
!! TATATAATTACTTGATTGAT+GGG + chr2_2:48454279-48454298 Msa0254930:intron 15.0%
!!! ATAATGAAAGTATATAGAAT+GGG + chr2_2:48454367-48454386 Msa0254930:intron 15.0%
!!! TTTTATTCTGGTATAAAATA+AGG + chr2_2:48454449-48454468 Msa0254930:intron 15.0%
!! CATCTATCTATAAAAAAAAA+AGG - chr2_2:48454899-48454918 None:intergenic 15.0%
!! ATAGAAAAAATCAACAAAAT+TGG + chr2_2:48456042-48456061 Msa0254930:CDS 15.0%
!!! AAAAAGATTCTAAAAGAAAA+AGG - chr2_2:48456901-48456920 None:intergenic 15.0%
!! GAATCATATATAATATAGTT+AGG + chr2_2:48457060-48457079 Msa0254930:three_prime_UTR 15.0%
!! AATACTAAAAAAAGAAAAAG+AGG - chr2_2:48457098-48457117 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr2_2:48457217-48457236 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr2_2:48457218-48457237 None:intergenic 15.0%
!!! ATATAAATATTTGGTGATGA+TGG + chr2_2:48452214-48452233 Msa0254930:intron 20.0%
!!! AGGTATGTTTAATTTCTTTT+TGG + chr2_2:48452409-48452428 Msa0254930:intron 20.0%
!!! GGACATTTTTGTAATTTTAA+AGG + chr2_2:48452703-48452722 Msa0254930:intron 20.0%
!! TTAATGCATATTAGTTGTAA+CGG - chr2_2:48452973-48452992 None:intergenic 20.0%
!! ACAACTAATATGCATTAATA+TGG + chr2_2:48452975-48452994 Msa0254930:intron 20.0%
!! CAAACAATATATGTAAAGTA+TGG - chr2_2:48453014-48453033 None:intergenic 20.0%
!! AATAATGACATCAATAGTTA+AGG - chr2_2:48453247-48453266 None:intergenic 20.0%
!!! TATCTTTTGTCATGATTATA+AGG + chr2_2:48453660-48453679 Msa0254930:intron 20.0%
!!! TCAGTTTTTTTTTTTTAGTC+AGG + chr2_2:48453863-48453882 Msa0254930:intron 20.0%
!! GGATTTAAAAACTAATTAGT+AGG - chr2_2:48454069-48454088 None:intergenic 20.0%
!!! AATAGTTTTTTACAAAGGAA+TGG - chr2_2:48454234-48454253 None:intergenic 20.0%
!! GTATATAATTACTTGATTGA+TGG + chr2_2:48454278-48454297 Msa0254930:intron 20.0%
!!! CATAATGAAAGTATATAGAA+TGG + chr2_2:48454366-48454385 Msa0254930:intron 20.0%
!!! TTGTGCATTATTTTTTATTC+TGG + chr2_2:48454437-48454456 Msa0254930:intron 20.0%
!!! TAATGACAATATCTTTTACT+AGG - chr2_2:48455064-48455083 None:intergenic 20.0%
!! TTTCTATAAGCAAATGTAAA+AGG + chr2_2:48456727-48456746 Msa0254930:three_prime_UTR 20.0%
!!! TAATATCAATACAATTTTGG+GGG - chr2_2:48456969-48456988 None:intergenic 20.0%
!!! CTAATATCAATACAATTTTG+GGG - chr2_2:48456970-48456989 None:intergenic 20.0%
!!! CCTAATATCAATACAATTTT+GGG - chr2_2:48456971-48456990 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr2_2:48457148-48457167 None:intergenic 20.0%
!!! TTAACGTTGTTGTTGTTTTT+TGG + chr2_2:48452051-48452070 Msa0254930:intron 25.0%
!!! TCATTGTTTTTTTCCTCTTT+CGG + chr2_2:48452079-48452098 Msa0254930:intron 25.0%
!!! GTTTTTTTCTTGGTTCATTT+TGG + chr2_2:48452236-48452255 Msa0254930:intron 25.0%
! GTAAAAATGCAAAAACCAAA+CGG - chr2_2:48452442-48452461 None:intergenic 25.0%
!! AGTATAAAAAGGCATAACAA+GGG - chr2_2:48452934-48452953 None:intergenic 25.0%
! TATATGTAAAGTATGGCTAT+TGG - chr2_2:48453007-48453026 None:intergenic 25.0%
!! TTATGCAATGGCTATATTTT+TGG + chr2_2:48453315-48453334 Msa0254930:intron 25.0%
! TAAATGCTAAACAAGATGTT+TGG + chr2_2:48453351-48453370 Msa0254930:intron 25.0%
!!! AATTTTAACCATGTAACTGA+CGG - chr2_2:48453426-48453445 None:intergenic 25.0%
!! TTTTGTCATGATTATAAGGT+TGG + chr2_2:48453664-48453683 Msa0254930:intron 25.0%
! TCAGTATCTCACTTTAAATA+TGG + chr2_2:48453697-48453716 Msa0254930:intron 25.0%
! CAGTATCTCACTTTAAATAT+GGG + chr2_2:48453698-48453717 Msa0254930:intron 25.0%
! ACAATGCATTATTATATGCA+GGG - chr2_2:48453955-48453974 None:intergenic 25.0%
! ATCATTAACCCTAGAAAATT+TGG + chr2_2:48454180-48454199 Msa0254930:intron 25.0%
! TCATTAACCCTAGAAAATTT+GGG + chr2_2:48454181-48454200 Msa0254930:intron 25.0%
!! GTTAAAACCCAAATTTTCTA+GGG - chr2_2:48454191-48454210 None:intergenic 25.0%
!! AGTTAAAACCCAAATTTTCT+AGG - chr2_2:48454192-48454211 None:intergenic 25.0%
!!! GGTTTTAACTGTTTTTTAGT+TGG + chr2_2:48454202-48454221 Msa0254930:intron 25.0%
!!! TGGTCAATAGTTTTTTACAA+AGG - chr2_2:48454239-48454258 None:intergenic 25.0%
!! CATAATTTGTAATGTCAAAG+TGG - chr2_2:48454259-48454278 None:intergenic 25.0%
!! TTTAGTTTCATTATGCTTCA+AGG - chr2_2:48454322-48454341 None:intergenic 25.0%
! AAATAATGCACAACTTTGAA+TGG - chr2_2:48454430-48454449 None:intergenic 25.0%
! ATACAATTCTTAACAAGCAA+AGG - chr2_2:48454551-48454570 None:intergenic 25.0%
! GCAAAGGAATAAAAAATTGA+AGG - chr2_2:48454628-48454647 None:intergenic 25.0%
!!! ATAGTGCTCTTTAATTTTTG+TGG - chr2_2:48454827-48454846 None:intergenic 25.0%
!!! TCATTCTATACTTTTTCAGA+TGG + chr2_2:48455140-48455159 Msa0254930:intron 25.0%
! TATATCTGATACAAATCCAA+AGG + chr2_2:48455257-48455276 Msa0254930:CDS 25.0%
! GTTTCTTAAAGAGAAATTAG+TGG + chr2_2:48455677-48455696 Msa0254930:CDS 25.0%
! TCATTTGGAAGATTGAAATT+AGG - chr2_2:48456008-48456027 None:intergenic 25.0%
! TAATTTCAATCTTCCAAATG+AGG + chr2_2:48456007-48456026 Msa0254930:CDS 25.0%
!! AAAAATGATGACTCCATTTT+TGG - chr2_2:48456182-48456201 None:intergenic 25.0%
!!! AAAATGGAGTCATCATTTTT+TGG + chr2_2:48456182-48456201 Msa0254930:CDS 25.0%
!!! GATGCAAAAAAATCACTTTT+TGG - chr2_2:48456248-48456267 None:intergenic 25.0%
! TAAAATAGCCAAAACACAAA+AGG - chr2_2:48456834-48456853 None:intergenic 25.0%
! AAAAAAAAGAGAAAAGCTAG+TGG + chr2_2:48456855-48456874 Msa0254930:three_prime_UTR 25.0%
! AAAAAAAGAGAAAAGCTAGT+GGG + chr2_2:48456856-48456875 Msa0254930:three_prime_UTR 25.0%
!! AATATCAATACAATTTTGGG+GGG - chr2_2:48456968-48456987 None:intergenic 25.0%
!! CCCAAAATTGTATTGATATT+AGG + chr2_2:48456968-48456987 Msa0254930:three_prime_UTR 25.0%
!! GCCTAATATCAATACAATTT+TGG - chr2_2:48456972-48456991 None:intergenic 25.0%
!! AAATTGTATTGATATTAGGC+CGG + chr2_2:48456972-48456991 Msa0254930:three_prime_UTR 25.0%
! ATATTATATCATGCAATGTC+TGG - chr2_2:48457031-48457050 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr2_2:48457149-48457168 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr2_2:48457170-48457189 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr2_2:48457171-48457190 None:intergenic 25.0%
AGAAAGAGAGAATAAAAGCA+GGG - chr2_2:48451509-48451528 None:intergenic 30.0%
AGTAGTAACATAGATAAGTG+GGG - chr2_2:48451638-48451657 None:intergenic 30.0%
GAGTAGTAACATAGATAAGT+GGG - chr2_2:48451639-48451658 None:intergenic 30.0%
AGAGTAGTAACATAGATAAG+TGG - chr2_2:48451640-48451659 None:intergenic 30.0%
!! TTTTGATGAAACTGATTCAG+TGG + chr2_2:48451839-48451858 Msa0254930:intron 30.0%
!!! TTTGAGGTGAGTTTTAGTTA+TGG + chr2_2:48451865-48451884 Msa0254930:intron 30.0%
!!! TTGAGGTGAGTTTTAGTTAT+GGG + chr2_2:48451866-48451885 Msa0254930:intron 30.0%
!!! CATTGTTTTTTTCCTCTTTC+GGG + chr2_2:48452080-48452099 Msa0254930:intron 30.0%
!!! TTTTGGCTTTTAATTGTTGC+AGG + chr2_2:48452253-48452272 Msa0254930:intron 30.0%
AAATGATGAGGAGAAATTGA+AGG - chr2_2:48452383-48452402 None:intergenic 30.0%
ATACCTTGAGAAAAATGATG+AGG - chr2_2:48452395-48452414 None:intergenic 30.0%
!! CATTTTAGGTAGTATCTGTT+TGG + chr2_2:48452566-48452585 Msa0254930:intron 30.0%
AGTATGATTGTAATCTGTGA+AGG + chr2_2:48452661-48452680 Msa0254930:intron 30.0%
! TTGTAATCTGTGAAGGATTT+TGG + chr2_2:48452668-48452687 Msa0254930:intron 30.0%
!! GGATTTTGGTATTTGAAGTA+TGG + chr2_2:48452682-48452701 Msa0254930:intron 30.0%
TGTTGAAATGACATAAACCT+TGG + chr2_2:48452806-48452825 Msa0254930:intron 30.0%
GTTGAAATGACATAAACCTT+GGG + chr2_2:48452807-48452826 Msa0254930:intron 30.0%
AATCATATAACATCTTCCCA+AGG - chr2_2:48452826-48452845 None:intergenic 30.0%
! GAGTATAAAAAGGCATAACA+AGG - chr2_2:48452935-48452954 None:intergenic 30.0%
ACATGTGAGCATAACTAAAT+TGG + chr2_2:48453064-48453083 Msa0254930:intron 30.0%
!! TCGAGTACAAAGTTGATTTT+TGG + chr2_2:48453122-48453141 Msa0254930:intron 30.0%
!! CGAGTACAAAGTTGATTTTT+GGG + chr2_2:48453123-48453142 Msa0254930:intron 30.0%
! TTTGGGTTAAAACAGTATCA+AGG + chr2_2:48453140-48453159 Msa0254930:intron 30.0%
TTGGGTTAAAACAGTATCAA+GGG + chr2_2:48453141-48453160 Msa0254930:intron 30.0%
TAGTTAAGGCATAATGGTTT+GGG - chr2_2:48453233-48453252 None:intergenic 30.0%
ATAGTTAAGGCATAATGGTT+TGG - chr2_2:48453234-48453253 None:intergenic 30.0%
CATCAATAGTTAAGGCATAA+TGG - chr2_2:48453239-48453258 None:intergenic 30.0%
CTAGTATGACATTTATGCAA+TGG + chr2_2:48453303-48453322 Msa0254930:intron 30.0%
AATTGTGTCCATTTGAAAGT+TGG - chr2_2:48453397-48453416 None:intergenic 30.0%
! TTTAAAGTGAGATACTGACA+GGG - chr2_2:48453695-48453714 None:intergenic 30.0%
! ATTTAAAGTGAGATACTGAC+AGG - chr2_2:48453696-48453715 None:intergenic 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr2_2:48453906-48453925 Msa0254930:intron 30.0%
CAATGCATTATTATATGCAG+GGG - chr2_2:48453954-48453973 None:intergenic 30.0%
GACAATGCATTATTATATGC+AGG - chr2_2:48453956-48453975 None:intergenic 30.0%
CTCAATGATAAACTGACAAA+TGG - chr2_2:48454005-48454024 None:intergenic 30.0%
CATTTGTCAGTTTATCATTG+AGG + chr2_2:48454003-48454022 Msa0254930:intron 30.0%
CAATAATGTCTAGGAAAACA+TGG + chr2_2:48454098-48454117 Msa0254930:intron 30.0%
TAGGGTTAATGATTACATGT+TGG - chr2_2:48454173-48454192 None:intergenic 30.0%
GGAATAAAAAATTGAAGGAC+AGG - chr2_2:48454623-48454642 None:intergenic 30.0%
! AAAAAGCATGTAAGAAGCAA+AGG - chr2_2:48454644-48454663 None:intergenic 30.0%
TGGAAAAGACTACAATAACT+TGG + chr2_2:48455292-48455311 Msa0254930:CDS 30.0%
ATGAAGAGATTGAAGAACAA+AGG + chr2_2:48455343-48455362 Msa0254930:CDS 30.0%
!! ATAACAAGTTGATTGAGAAG+AGG + chr2_2:48455712-48455731 Msa0254930:CDS 30.0%
GATAATGTTGTTCACATATC+AGG + chr2_2:48455765-48455784 Msa0254930:CDS 30.0%
ATGAAATGAGATCTGCAAAA+TGG + chr2_2:48455865-48455884 Msa0254930:CDS 30.0%
TGAAATGAGATCTGCAAAAT+GGG + chr2_2:48455866-48455885 Msa0254930:CDS 30.0%
! TTTTGCATCTTTTGCTGAAA+TGG + chr2_2:48456259-48456278 Msa0254930:CDS 30.0%
!! TTGTTTAGCCTTTTCTTTTG+AGG + chr2_2:48456304-48456323 Msa0254930:CDS 30.0%
! AAATCTTTCAAGTGGGAAAA+GGG + chr2_2:48456336-48456355 Msa0254930:CDS 30.0%
! TAGATTTTCTGATGTGTACA+TGG + chr2_2:48456361-48456380 Msa0254930:CDS 30.0%
ACAACATAGAATCCATTTCA+AGG + chr2_2:48456689-48456708 Msa0254930:three_prime_UTR 30.0%
!!! GAACTTTTTTCACCTTGAAA+TGG - chr2_2:48456704-48456723 None:intergenic 30.0%
CAAATGTAAAAGGAGATTTG+TGG + chr2_2:48456737-48456756 Msa0254930:three_prime_UTR 30.0%
! GATTTTGTCCTTTTGTGTTT+TGG + chr2_2:48456823-48456842 Msa0254930:three_prime_UTR 30.0%
GAAATGACGAAAAAAGACAC+TGG - chr2_2:48451464-48451483 None:intergenic 35.0%
GAAAGAGAGAATAAAAGCAG+GGG - chr2_2:48451508-48451527 None:intergenic 35.0%
GAGAAAGAGAGAATAAAAGC+AGG - chr2_2:48451510-48451529 None:intergenic 35.0%
TCATTTGTGTATCCACCAAA+GGG + chr2_2:48451599-48451618 Msa0254930:five_prime_UTR 35.0%
!!! TTTTTGGTTTTACCCTTTGG+TGG - chr2_2:48451614-48451633 None:intergenic 35.0%
GTAGTAACATAGATAAGTGG+GGG - chr2_2:48451637-48451656 None:intergenic 35.0%
!! TGTTCTGAGGTTTAGAAAAG+TGG - chr2_2:48451689-48451708 None:intergenic 35.0%
ACTTCTACTCATAGTCATTG+AGG + chr2_2:48451741-48451760 Msa0254930:five_prime_UTR 35.0%
!!! GAGTTTTAGTTATGGGTTCA+AGG + chr2_2:48451873-48451892 Msa0254930:intron 35.0%
!!! GCGTTGTTGTTTTTCATGTT+TGG + chr2_2:48452104-48452123 Msa0254930:intron 35.0%
!!! GGTGATGATGGTTTTTTTCT+TGG + chr2_2:48452226-48452245 Msa0254930:intron 35.0%
ATTGAAGGTGAAGTTGAATG+TGG - chr2_2:48452368-48452387 None:intergenic 35.0%
!! TCTCCTCATCATTTTTCTCA+AGG + chr2_2:48452389-48452408 Msa0254930:five_prime_UTR 35.0%
! GTATCTGTTTGGAAAAGTGT+TGG + chr2_2:48452577-48452596 Msa0254930:intron 35.0%
CATTATGTCAGAAGTTCACA+TGG - chr2_2:48452784-48452803 None:intergenic 35.0%
CATGTGAACTTCTGACATAA+TGG + chr2_2:48452782-48452801 Msa0254930:intron 35.0%
TCACAAGGTGGAGTATAAAA+AGG - chr2_2:48452945-48452964 None:intergenic 35.0%
ACGTTGCATTATATATGCAG+AGG + chr2_2:48453092-48453111 Msa0254930:intron 35.0%
! TGTTGCTTCCAACTTTCAAA+TGG + chr2_2:48453386-48453405 Msa0254930:intron 35.0%
! TTTTTACACCGTCAGTTACA+TGG + chr2_2:48453415-48453434 Msa0254930:intron 35.0%
TGATAAGAACGACCGAAATA+TGG - chr2_2:48453472-48453491 None:intergenic 35.0%
GTTCCTCAAACAAACACAAA+GGG - chr2_2:48453637-48453656 None:intergenic 35.0%
TGTTCCTCAAACAAACACAA+AGG - chr2_2:48453638-48453657 None:intergenic 35.0%
AATCCTAAGGATTATGAGTC+AGG + chr2_2:48453793-48453812 Msa0254930:intron 35.0%
TTTCCTGACTCATAATCCTT+AGG - chr2_2:48453799-48453818 None:intergenic 35.0%
!! TTTTTAGTCAGGTAACCTAG+TGG + chr2_2:48453874-48453893 Msa0254930:intron 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr2_2:48453894-48453913 Msa0254930:intron 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr2_2:48453905-48453924 Msa0254930:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr2_2:48453907-48453926 Msa0254930:intron 35.0%
CACGTACTAGAAAGAAAACA+AGG - chr2_2:48454396-48454415 None:intergenic 35.0%
!! CTTGTTTTCTTTCTAGTACG+TGG + chr2_2:48454394-48454413 Msa0254930:intron 35.0%
TTGCTTTAACACATAGATCG+AGG - chr2_2:48454958-48454977 None:intergenic 35.0%
TTCCTAGCTAATTTCTTGCT+TGG - chr2_2:48455192-48455211 None:intergenic 35.0%
!! TGCTCTAAGATGAAGAACTT+TGG - chr2_2:48455220-48455239 None:intergenic 35.0%
TCCAAAGGATGAAACAAACA+TGG + chr2_2:48455272-48455291 Msa0254930:CDS 35.0%
TCCATGTTTGTTTCATCCTT+TGG - chr2_2:48455276-48455295 None:intergenic 35.0%
GCTAGCATTTCAACTGTTAA+AGG + chr2_2:48455399-48455418 Msa0254930:CDS 35.0%
CGATGCTATTGAACATAATG+TGG + chr2_2:48455905-48455924 Msa0254930:CDS 35.0%
! GAGACTTGTTCATCCAAAAA+TGG + chr2_2:48456166-48456185 Msa0254930:CDS 35.0%
!! TTTTTGGCAACATGATTCAC+AGG + chr2_2:48456198-48456217 Msa0254930:CDS 35.0%
! TTTTGCTGAAATGGCTAAGA+GGG + chr2_2:48456268-48456287 Msa0254930:CDS 35.0%
AGCTTGAACCTCAAAAGAAA+AGG - chr2_2:48456315-48456334 None:intergenic 35.0%
TCAAGCTGAAATCTTTCAAG+TGG + chr2_2:48456328-48456347 Msa0254930:CDS 35.0%
! CAAGCTGAAATCTTTCAAGT+GGG + chr2_2:48456329-48456348 Msa0254930:CDS 35.0%
! GAAATCTTTCAAGTGGGAAA+AGG + chr2_2:48456335-48456354 Msa0254930:CDS 35.0%
ACAACAGTAAAACCAACAAC+TGG - chr2_2:48456449-48456468 None:intergenic 35.0%
!! TTACTGTTGTTCCTGGTTTT+AGG + chr2_2:48456459-48456478 Msa0254930:CDS 35.0%
! GTTTTACCAATCCTAAAACC+AGG - chr2_2:48456473-48456492 None:intergenic 35.0%
AAGAATCACATCAAGGTGAA+AGG + chr2_2:48456524-48456543 Msa0254930:CDS 35.0%
GATTAACTCCTGTGTGAAAT+CGG - chr2_2:48456563-48456582 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr2_2:48457135-48457154 None:intergenic 35.0%
GAAGAGAGAGAGAGAGTAAT+TGG - chr2_2:48451486-48451505 None:intergenic 40.0%
GTCATTTGTGTATCCACCAA+AGG + chr2_2:48451598-48451617 Msa0254930:five_prime_UTR 40.0%
!!! GGGTTTTTGGTTTTACCCTT+TGG - chr2_2:48451617-48451636 None:intergenic 40.0%
! CATAGATAAGTGGGGGTTTT+TGG - chr2_2:48451630-48451649 None:intergenic 40.0%
TCAATGTTTGCTCTGTTCTG+AGG - chr2_2:48451702-48451721 None:intergenic 40.0%
! GAGTAGAAGTGTGTGATGAA+GGG - chr2_2:48451731-48451750 None:intergenic 40.0%
! TGAGTAGAAGTGTGTGATGA+AGG - chr2_2:48451732-48451751 None:intergenic 40.0%
!! ACTGATTCAGTGGCTTTTTG+AGG + chr2_2:48451849-48451868 Msa0254930:intron 40.0%
TGTTGTTCTAACACCAAACG+CGG - chr2_2:48452280-48452299 None:intergenic 40.0%
!! CTTTTTGGTCTGTTACCGTT+TGG + chr2_2:48452424-48452443 Msa0254930:intron 40.0%
!! GTTGTAACGGATCTATCACA+AGG - chr2_2:48452960-48452979 None:intergenic 40.0%
! AGTATCAAGGGTTCTAGTCA+CGG + chr2_2:48453153-48453172 Msa0254930:intron 40.0%
CAAACAAACACAAAGGGCAA+GGG - chr2_2:48453631-48453650 None:intergenic 40.0%
TCAAACAAACACAAAGGGCA+AGG - chr2_2:48453632-48453651 None:intergenic 40.0%
TTGCCCTTTGTGTTTGTTTG+AGG + chr2_2:48453631-48453650 Msa0254930:intron 40.0%
GTCTAGATCTTCAAAGATGC+TGG + chr2_2:48453753-48453772 Msa0254930:intron 40.0%
ATGCTGGATATGCATATCTC+AGG + chr2_2:48453769-48453788 Msa0254930:intron 40.0%
TGCTGGATATGCATATCTCA+GGG + chr2_2:48453770-48453789 Msa0254930:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr2_2:48453892-48453911 None:intergenic 40.0%
CCCCACTTATTCACCTTATA+AGG - chr2_2:48453910-48453929 None:intergenic 40.0%
TCGAGGACTTTAGTAGTGAA+GGG - chr2_2:48454941-48454960 None:intergenic 40.0%
ATCGAGGACTTTAGTAGTGA+AGG - chr2_2:48454942-48454961 None:intergenic 40.0%
CACCAAGCAAGAAATTAGCT+AGG + chr2_2:48455187-48455206 Msa0254930:CDS 40.0%
TCAATTCCATCAGGGTCAAA+AGG - chr2_2:48455456-48455475 None:intergenic 40.0%
CAGAAGCTTCAATTCCATCA+GGG - chr2_2:48455464-48455483 None:intergenic 40.0%
TCAGAAGCTTCAATTCCATC+AGG - chr2_2:48455465-48455484 None:intergenic 40.0%
AGCTGAATCGAAGGAGATAA+AGG + chr2_2:48455581-48455600 Msa0254930:CDS 40.0%
GCTGAATCGAAGGAGATAAA+GGG + chr2_2:48455582-48455601 Msa0254930:CDS 40.0%
AGAAGTTGGAATCACAGGTT+AGG + chr2_2:48455634-48455653 Msa0254930:CDS 40.0%
GAGAAGAGGTTGAATCAAAG+TGG + chr2_2:48455726-48455745 Msa0254930:CDS 40.0%
AGAACAGTAGCAAAATGGCT+AGG - chr2_2:48455798-48455817 None:intergenic 40.0%
GACGAAGAACAGTAGCAAAA+TGG - chr2_2:48455803-48455822 None:intergenic 40.0%
!! TCATCAGAAAGTGCCTCATT+TGG - chr2_2:48456023-48456042 None:intergenic 40.0%
AATTGCGCAAACGATGATCT+TGG - chr2_2:48456128-48456147 None:intergenic 40.0%
! ATTCACAGGAACCTTTTGAG+TGG + chr2_2:48456212-48456231 Msa0254930:CDS 40.0%
! CTTTTGCTGAAATGGCTAAG+AGG + chr2_2:48456267-48456286 Msa0254930:CDS 40.0%
TCAGAAGAAGAACCAGTTGT+TGG + chr2_2:48456434-48456453 Msa0254930:CDS 40.0%
!!! GTTGGTTTTACTGTTGTTCC+TGG + chr2_2:48456452-48456471 Msa0254930:CDS 40.0%
!!! GTTGTTCCTGGTTTTAGGAT+TGG + chr2_2:48456464-48456483 Msa0254930:CDS 40.0%
TGATGTGATTCTTCTGCATG+AGG - chr2_2:48456517-48456536 None:intergenic 40.0%
CATGCAGAAGAATCACATCA+AGG + chr2_2:48456517-48456536 Msa0254930:CDS 40.0%
!! ATCATCGATTCGAGATCAGA+CGG + chr2_2:48456586-48456605 Msa0254930:three_prime_UTR 40.0%
TCTTAGCCGTCGATCTAAAT+CGG + chr2_2:48456644-48456663 Msa0254930:three_prime_UTR 40.0%
TACAACCCGATTTAGATCGA+CGG - chr2_2:48456653-48456672 None:intergenic 40.0%
TATGTTGTAACTGTGTCGCA+TGG - chr2_2:48456677-48456696 None:intergenic 40.0%
GTAAAAGGAGATTTGTGGTC+AGG + chr2_2:48456742-48456761 Msa0254930:three_prime_UTR 40.0%
TAATGTGCCCTACAACACAA+GGG + chr2_2:48456765-48456784 Msa0254930:three_prime_UTR 40.0%
AAAGGTTGTTCCCAATGCTA+TGG - chr2_2:48456883-48456902 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr2_2:48457134-48457153 None:intergenic 40.0%
GGATACACAAATGACACAGC+TGG - chr2_2:48451593-48451612 None:intergenic 45.0%
!! GTAACGGATCTATCACAAGG+TGG - chr2_2:48452957-48452976 None:intergenic 45.0%
! GTATCAAGGGTTCTAGTCAC+GGG + chr2_2:48453154-48453173 Msa0254930:intron 45.0%
TTCTAGTCACGGGAAACACA+TGG + chr2_2:48453164-48453183 Msa0254930:intron 45.0%
GCATATCTCAGGGAATCCTA+AGG + chr2_2:48453780-48453799 Msa0254930:intron 45.0%
ATTATTATATGCAGGGGCCG+GGG - chr2_2:48453948-48453967 None:intergenic 45.0%
CATTATTATATGCAGGGGCC+GGG - chr2_2:48453949-48453968 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG - chr2_2:48453950-48453969 None:intergenic 45.0%
ATGAGCATAGCTCAGTTGGT+AGG - chr2_2:48453978-48453997 None:intergenic 45.0%
TACCAACTGAGCTATGCTCA+TGG + chr2_2:48453977-48453996 Msa0254930:intron 45.0%
ACCAACTGAGCTATGCTCAT+GGG + chr2_2:48453978-48453997 Msa0254930:intron 45.0%
!! TTATGCTTCAAGGAGCGTTG+AGG - chr2_2:48454312-48454331 None:intergenic 45.0%
AGTATCGCTTTCTCTGGTGA+AGG - chr2_2:48455558-48455577 None:intergenic 45.0%
CTTCTTCGCAGTAATCTCGT+AGG - chr2_2:48455619-48455638 None:intergenic 45.0%
CGAGATTACTGCGAAGAAGT+TGG + chr2_2:48455620-48455639 Msa0254930:CDS 45.0%
TGCGAAGAAGTTGGAATCAC+AGG + chr2_2:48455629-48455648 Msa0254930:CDS 45.0%
GAAACTCTCCACCACTCAAA+AGG - chr2_2:48456226-48456245 None:intergenic 45.0%
CTTAGCCGTCGATCTAAATC+GGG + chr2_2:48456645-48456664 Msa0254930:three_prime_UTR 45.0%
GTAATGTGCCCTACAACACA+AGG + chr2_2:48456764-48456783 Msa0254930:three_prime_UTR 45.0%
TGTCCTTCCCTTGTGTTGTA+GGG - chr2_2:48456775-48456794 None:intergenic 45.0%
ATGTCCTTCCCTTGTGTTGT+AGG - chr2_2:48456776-48456795 None:intergenic 45.0%
TACAACACAAGGGAAGGACA+TGG + chr2_2:48456775-48456794 Msa0254930:three_prime_UTR 45.0%
! CATGGCATGGAGTGAACTTT+TGG + chr2_2:48456793-48456812 Msa0254930:three_prime_UTR 45.0%
! GCATGGAGTGAACTTTTGGT+AGG + chr2_2:48456797-48456816 Msa0254930:three_prime_UTR 45.0%
ATTGATATTAGGCCGGTGAC+AGG + chr2_2:48456979-48456998 Msa0254930:three_prime_UTR 45.0%
TTGATATTAGGCCGGTGACA+GGG + chr2_2:48456980-48456999 Msa0254930:three_prime_UTR 45.0%
GACACAGCTGGAAGTGAGAA+AGG - chr2_2:48451581-48451600 None:intergenic 50.0%
AACAACAACGCACCCGAAAG+AGG - chr2_2:48452095-48452114 None:intergenic 50.0%
AATTGTTGCAGGACCGCGTT+TGG + chr2_2:48452264-48452283 Msa0254930:intron 50.0%
! GTGAATAAGTGGGGTGTCCA+CGG + chr2_2:48453916-48453935 Msa0254930:intron 50.0%
TCCCATGAGCATAGCTCAGT+TGG - chr2_2:48453982-48454001 None:intergenic 50.0%
!! TCAAGGAGCGTTGAGGCAAT+AGG - chr2_2:48454305-48454324 None:intergenic 50.0%
!! TTGCTTGGTGTCACTGCTGA+AGG - chr2_2:48455177-48455196 None:intergenic 50.0%
! CAGACACCTTTTGACCCTGA+TGG + chr2_2:48455447-48455466 Msa0254930:CDS 50.0%
GATACTCGCAGCTGAATCGA+AGG + chr2_2:48455572-48455591 Msa0254930:CDS 50.0%
TGCTACTGTTCTTCGTCACG+CGG + chr2_2:48455806-48455825 Msa0254930:CDS 50.0%
CATCGTTTGCGCAATTCTGC+AGG + chr2_2:48456132-48456151 Msa0254930:CDS 50.0%
!! CACAGGAACCTTTTGAGTGG+TGG + chr2_2:48456215-48456234 Msa0254930:CDS 50.0%
AGCTAGTGGGACCATAGCAT+TGG + chr2_2:48456869-48456888 Msa0254930:three_prime_UTR 50.0%
GCTAGTGGGACCATAGCATT+GGG + chr2_2:48456870-48456889 Msa0254930:three_prime_UTR 50.0%
TGATATTAGGCCGGTGACAG+GGG + chr2_2:48456981-48457000 Msa0254930:three_prime_UTR 50.0%
GTATTATACTCCCTCCGTCC+CGG + chr2_2:48457113-48457132 Msa0254930:three_prime_UTR 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr2_2:48457130-48457149 None:intergenic 50.0%
! GCTGCGAGTATCGCTTTCTC+TGG - chr2_2:48455564-48455583 None:intergenic 55.0%
AAGGTGAAAGGATCGCGTGC+TGG + chr2_2:48456536-48456555 Msa0254930:CDS 55.0%
! GTGCTGGTCCGATTTCACAC+AGG + chr2_2:48456552-48456571 Msa0254930:CDS 55.0%
GTGCCCTACAACACAAGGGA+AGG + chr2_2:48456769-48456788 Msa0254930:three_prime_UTR 55.0%
CACAAGGGAAGGACATGGCA+TGG + chr2_2:48456780-48456799 Msa0254930:three_prime_UTR 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr2_2:48457126-48457145 None:intergenic 55.0%
TATTAGGCCGGTGACAGGGG+TGG + chr2_2:48456984-48457003 Msa0254930:three_prime_UTR 60.0%
AGCTAGACCACCCCTGTCAC+CGG - chr2_2:48456994-48457013 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr2_2:48457127-48457146 None:intergenic 60.0%
GGTGTCCACGGTTCGAACCC+CGG + chr2_2:48453928-48453947 Msa0254930:intron 65.0%
AGGGGCCGGGGTTCGAACCG+TGG - chr2_2:48453936-48453955 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 48451431 48457272 48451431 ID=Msa0254930;Name=Msa0254930
chr2_2 mRNA 48451431 48457272 48451431 ID=Msa0254930-mRNA-1;Parent=Msa0254930;Name=Msa0254930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=468|1|1|1|0|0.33|3|692|473
chr2_2 exon 48451431 48451762 48451431 ID=Msa0254930-mRNA-1:exon:14589;Parent=Msa0254930-mRNA-1
chr2_2 exon 48452275 48452410 48452275 ID=Msa0254930-mRNA-1:exon:14590;Parent=Msa0254930-mRNA-1
chr2_2 exon 48455159 48457272 48455159 ID=Msa0254930-mRNA-1:exon:14591;Parent=Msa0254930-mRNA-1
chr2_2 five_prime_UTR 48451431 48451762 48451431 ID=Msa0254930-mRNA-1:five_prime_utr;Parent=Msa0254930-mRNA-1
chr2_2 five_prime_UTR 48452275 48452410 48452275 ID=Msa0254930-mRNA-1:five_prime_utr;Parent=Msa0254930-mRNA-1
chr2_2 CDS 48455159 48456580 48455159 ID=Msa0254930-mRNA-1:cds;Parent=Msa0254930-mRNA-1
chr2_2 three_prime_UTR 48456581 48457272 48456581 ID=Msa0254930-mRNA-1:three_prime_utr;Parent=Msa0254930-mRNA-1
Gene Sequence

>Msa0254930

ATGGAATCAATGAAACCTTCAGCAGTGACACCAAGCAAGAAATTAGCTAGGAATTTTGCCAAAGTTCTTCATCTTAGAGCATTTTTGAAGAATGTTACTATATCTGATACAAATCCAAAGGATGAAACAAACATGGAAAAGACTACAATAACTTGGTCTGAATCATTCAAAAAAGTTGATGAAGATGAAGAGATTGAAGAACAAAGGATTGCAACAGAAGCACTTCTTTCAAAGATTTTTGCTAGCATTTCAACTGTTAAAGGTGCTTATGCTGAACTGCAGCATTTTCAGACACCTTTTGACCCTGATGGAATTGAAGCTTCTGATAAACTGCTAGTTTCTGAGTTGAAGCATTTATCTGAGCTAAAACAATGTTACTTGAAGAAACAATTTGATCCTTCACCAGAGAAAGCGATACTCGCAGCTGAATCGAAGGAGATAAAGGGTGTCATAAAAACCTACGAGATTACTGCGAAGAAGTTGGAATCACAGGTTAGGCTCAAAGATTCTGAGATTATGTTTCTTAAAGAGAAATTAGTGGAAGCTAATAGTCATAACAAGTTGATTGAGAAGAGGTTGAATCAAAGTGGATCATTATCAGTACTTGATAATGTTGTTCACATATCAGGATTAAGTCCTAGCCATTTTGCTACTGTTCTTCGTCACGCGGTTAGATCGATTCGAAACTTTGTGAAGTTGATTGTTGATGAAATGAGATCTGCAAAATGGGATATTGATGCTGCTGTCGATGCTATTGAACATAATGTGGTTTATATGATTGAAGATCACAAGTGTTTCACAATTGAATCTTTTGTTTGCAGAGAAATGTTTGATGCATTTCACTTTCCTAATTTCAATCTTCCAAATGAGGCACTTTCTGATGATAGAAAAAATCAACAAAATTGGTTCTTTGAAAAGTTCAATGAGTTGAAATCAACGAAAGCTAAAGACTTTCTTGCTGAGAAACCAAGATCATCGTTTGCGCAATTCTGCAGGAACAAGTATTTGAGACTTGTTCATCCAAAAATGGAGTCATCATTTTTTGGCAACATGATTCACAGGAACCTTTTGAGTGGTGGAGAGTTTCCAAAAAGTGATTTTTTTGCATCTTTTGCTGAAATGGCTAAGAGGGTTTTTCTCTTACATTGTTTAGCCTTTTCTTTTGAGGTTCAAGCTGAAATCTTTCAAGTGGGAAAAGGGTGTAGATTTTCTGATGTGTACATGGAAAGTGTGAATGATGAAATGTTTGTGTTTTCAGACAAGACAGTTGTTGAATCAGAAGAAGAACCAGTTGTTGGTTTTACTGTTGTTCCTGGTTTTAGGATTGGTAAAACTGTTTTACAATGTCAAGTTTACCTCATGCAGAAGAATCACATCAAGGTGAAAGGATCGCGTGCTGGTCCGATTTCACACAGGAGTTAA
Protein sequence

>Msa0254930

MESMKPSAVTPSKKLARNFAKVLHLRAFLKNVTISDTNPKDETNMEKTTITWSESFKKVDEDEEIEEQRIATEALLSKIFASISTVKGAYAELQHFQTPFDPDGIEASDKLLVSELKHLSELKQCYLKKQFDPSPEKAILAAESKEIKGVIKTYEITAKKLESQVRLKDSEIMFLKEKLVEANSHNKLIEKRLNQSGSLSVLDNVVHISGLSPSHFATVLRHAVRSIRNFVKLIVDEMRSAKWDIDAAVDAIEHNVVYMIEDHKCFTIESFVCREMFDAFHFPNFNLPNEALSDDRKNQQNWFFEKFNELKSTKAKDFLAEKPRSSFAQFCRNKYLRLVHPKMESSFFGNMIHRNLLSGGEFPKSDFFASFAEMAKRVFLLHCLAFSFEVQAEIFQVGKGCRFSDVYMESVNDEMFVFSDKTVVESEEEPVVGFTVVPGFRIGKTVLQCQVYLMQKNHIKVKGSRAGPISHRS*