Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332770 | XP_024632249.1 | 84.428 | 411 | 57 | 1 | 1 | 404 | 1 | 411 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332770 | sp|Q9ZVA5|EP1L4_ARATH | 47.962 | 417 | 187 | 9 | 11 | 405 | 3 | 411 | 2.74e-125 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0214820 | Msa0332770 | 0.807383 | 5.193335e-50 | -8.615850e-47 |
| Msa0294200 | Msa0332770 | 0.802461 | 5.549076e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332770 | MtrunA17_Chr2g0315841 | 84.428 | 411 | 57 | 1 | 1 | 404 | 1 | 411 | 0.0 | 716 |
| Msa0332770 | MtrunA17_Chr2g0315851 | 82.367 | 414 | 64 | 2 | 1 | 405 | 1 | 414 | 0.0 | 683 |
| Msa0332770 | MtrunA17_Chr2g0315871 | 63.985 | 261 | 67 | 5 | 36 | 287 | 5 | 247 | 4.14e-106 | 314 |
| Msa0332770 | MtrunA17_Chr2g0315861 | 86.982 | 169 | 21 | 1 | 212 | 380 | 4 | 171 | 9.42e-105 | 306 |
| Msa0332770 | MtrunA17_Chr1g0149381 | 25.000 | 320 | 218 | 8 | 91 | 405 | 90 | 392 | 5.90e-22 | 98.6 |
| Msa0332770 | MtrunA17_Chr3g0106121 | 28.852 | 357 | 214 | 14 | 62 | 396 | 41 | 379 | 7.07e-21 | 95.1 |
| Msa0332770 | MtrunA17_Chr7g0244431 | 27.245 | 323 | 204 | 11 | 93 | 405 | 80 | 381 | 7.11e-21 | 94.4 |
| Msa0332770 | MtrunA17_Chr2g0323301 | 29.379 | 354 | 183 | 18 | 93 | 405 | 77 | 404 | 1.12e-19 | 91.7 |
| Msa0332770 | MtrunA17_Chr7g0237331 | 28.612 | 353 | 210 | 14 | 63 | 394 | 51 | 382 | 3.92e-19 | 89.7 |
| Msa0332770 | MtrunA17_Chr3g0106151 | 27.792 | 385 | 224 | 18 | 33 | 394 | 17 | 370 | 4.30e-19 | 89.7 |
| Msa0332770 | MtrunA17_Chr3g0134291 | 28.732 | 355 | 207 | 19 | 63 | 391 | 48 | 382 | 9.81e-19 | 88.6 |
| Msa0332770 | MtrunA17_Chr7g0257821 | 27.978 | 361 | 210 | 19 | 63 | 403 | 51 | 381 | 1.01e-18 | 88.6 |
| Msa0332770 | MtrunA17_Chr0c04g0492031 | 28.732 | 355 | 207 | 19 | 63 | 391 | 48 | 382 | 1.67e-18 | 87.8 |
| Msa0332770 | MtrunA17_Chr3g0137741 | 23.944 | 355 | 237 | 12 | 60 | 405 | 57 | 387 | 1.76e-18 | 87.8 |
| Msa0332770 | MtrunA17_Chr0c04g0492001 | 28.732 | 355 | 207 | 19 | 63 | 391 | 48 | 382 | 2.66e-18 | 87.4 |
| Msa0332770 | MtrunA17_Chr2g0333091 | 26.625 | 323 | 213 | 10 | 90 | 404 | 81 | 387 | 2.86e-18 | 87.0 |
| Msa0332770 | MtrunA17_Chr3g0106131 | 26.944 | 360 | 223 | 13 | 62 | 399 | 41 | 382 | 3.04e-18 | 87.0 |
| Msa0332770 | MtrunA17_Chr3g0106141 | 28.691 | 359 | 212 | 15 | 62 | 396 | 41 | 379 | 6.51e-18 | 85.9 |
| Msa0332770 | MtrunA17_Chr3g0106211 | 27.072 | 362 | 215 | 16 | 62 | 396 | 44 | 383 | 1.61e-17 | 84.7 |
| Msa0332770 | MtrunA17_Chr3g0134321 | 41.304 | 138 | 76 | 4 | 63 | 198 | 45 | 179 | 2.74e-17 | 84.0 |
| Msa0332770 | MtrunA17_Chr5g0428111 | 27.941 | 340 | 187 | 16 | 91 | 396 | 78 | 393 | 5.44e-17 | 83.2 |
| Msa0332770 | MtrunA17_Chr2g0280681 | 27.108 | 332 | 189 | 15 | 93 | 394 | 78 | 386 | 7.39e-17 | 82.8 |
| Msa0332770 | MtrunA17_Chr2g0280691 | 25.474 | 369 | 206 | 18 | 63 | 394 | 48 | 384 | 9.28e-17 | 82.4 |
| Msa0332770 | MtrunA17_Chr1g0202331 | 24.548 | 387 | 225 | 16 | 70 | 405 | 56 | 426 | 1.52e-16 | 82.0 |
| Msa0332770 | MtrunA17_Chr8g0340061 | 26.126 | 333 | 200 | 13 | 93 | 396 | 77 | 392 | 3.63e-16 | 80.1 |
| Msa0332770 | MtrunA17_Chr8g0361281 | 26.113 | 337 | 194 | 12 | 93 | 394 | 72 | 388 | 4.76e-16 | 80.5 |
| Msa0332770 | MtrunA17_Chr3g0106221 | 28.804 | 368 | 208 | 18 | 62 | 396 | 43 | 389 | 6.07e-16 | 80.1 |
| Msa0332770 | MtrunA17_Chr5g0428101 | 26.727 | 333 | 200 | 15 | 91 | 396 | 77 | 392 | 7.74e-16 | 79.7 |
| Msa0332770 | MtrunA17_Chr2g0280711 | 24.269 | 342 | 193 | 15 | 93 | 394 | 76 | 391 | 1.05e-15 | 79.3 |
| Msa0332770 | MtrunA17_Chr3g0106191 | 30.159 | 315 | 179 | 13 | 96 | 394 | 2 | 291 | 1.06e-15 | 79.3 |
| Msa0332770 | MtrunA17_Chr3g0106201 | 26.136 | 352 | 225 | 14 | 62 | 394 | 41 | 376 | 1.87e-15 | 78.6 |
| Msa0332770 | MtrunA17_Chr2g0318171 | 24.768 | 323 | 207 | 13 | 93 | 405 | 90 | 386 | 3.25e-15 | 77.8 |
| Msa0332770 | MtrunA17_Chr8g0348661 | 27.733 | 375 | 209 | 19 | 62 | 403 | 33 | 378 | 3.63e-15 | 77.8 |
| Msa0332770 | MtrunA17_Chr8g0340081 | 25.373 | 335 | 200 | 13 | 93 | 396 | 79 | 394 | 6.63e-15 | 76.6 |
| Msa0332770 | MtrunA17_Chr3g0078551 | 27.457 | 346 | 188 | 18 | 91 | 394 | 75 | 399 | 8.90e-15 | 76.3 |
| Msa0332770 | MtrunA17_Chr6g0467281 | 29.084 | 251 | 145 | 9 | 93 | 332 | 72 | 300 | 1.17e-14 | 75.9 |
| Msa0332770 | MtrunA17_Chr2g0280701 | 24.620 | 329 | 204 | 12 | 93 | 394 | 73 | 384 | 1.96e-14 | 75.5 |
| Msa0332770 | MtrunA17_Chr8g0340091 | 24.398 | 332 | 182 | 12 | 93 | 396 | 130 | 420 | 2.50e-14 | 75.1 |
| Msa0332770 | MtrunA17_Chr3g0084621 | 26.347 | 334 | 190 | 17 | 93 | 394 | 79 | 388 | 4.54e-14 | 73.9 |
| Msa0332770 | MtrunA17_Chr8g0361251 | 26.113 | 337 | 189 | 13 | 93 | 394 | 74 | 385 | 7.60e-14 | 73.6 |
| Msa0332770 | MtrunA17_Chr8g0361311 | 25.816 | 337 | 190 | 14 | 93 | 394 | 74 | 385 | 1.33e-13 | 72.0 |
| Msa0332770 | MtrunA17_Chr2g0323241 | 48.780 | 82 | 34 | 4 | 93 | 169 | 81 | 159 | 3.32e-13 | 70.9 |
| Msa0332770 | MtrunA17_Chr7g0236231 | 24.444 | 360 | 177 | 18 | 93 | 399 | 84 | 401 | 6.26e-13 | 70.9 |
| Msa0332770 | MtrunA17_Chr8g0361441 | 24.924 | 329 | 204 | 15 | 93 | 394 | 77 | 389 | 7.49e-13 | 70.5 |
| Msa0332770 | MtrunA17_Chr4g0042441 | 26.748 | 329 | 199 | 14 | 93 | 394 | 74 | 387 | 8.93e-13 | 70.1 |
| Msa0332770 | MtrunA17_Chr6g0467301 | 28.125 | 256 | 141 | 12 | 93 | 332 | 77 | 305 | 1.38e-12 | 69.7 |
| Msa0332770 | MtrunA17_Chr8g0361301 | 23.780 | 328 | 207 | 13 | 93 | 394 | 75 | 385 | 1.53e-12 | 69.3 |
| Msa0332770 | MtrunA17_Chr3g0114851 | 27.234 | 235 | 145 | 10 | 93 | 323 | 81 | 293 | 1.58e-12 | 69.3 |
| Msa0332770 | MtrunA17_Chr4g0042401 | 27.083 | 336 | 193 | 18 | 91 | 394 | 73 | 388 | 1.66e-12 | 69.3 |
| Msa0332770 | MtrunA17_Chr3g0078531 | 25.664 | 339 | 204 | 13 | 91 | 394 | 85 | 410 | 2.33e-12 | 68.9 |
| Msa0332770 | MtrunA17_Chr4g0048581 | 25.100 | 251 | 160 | 8 | 92 | 328 | 80 | 316 | 3.18e-12 | 68.6 |
| Msa0332770 | MtrunA17_Chr4g0042381 | 24.524 | 420 | 241 | 22 | 10 | 394 | 2 | 380 | 4.10e-12 | 68.2 |
| Msa0332770 | MtrunA17_Chr4g0042341 | 22.986 | 422 | 253 | 18 | 14 | 394 | 4 | 394 | 4.47e-12 | 68.2 |
| Msa0332770 | MtrunA17_Chr7g0236341 | 34.906 | 106 | 66 | 3 | 93 | 195 | 75 | 180 | 7.01e-12 | 67.4 |
| Msa0332770 | MtrunA17_Chr8g0340071 | 26.939 | 245 | 146 | 9 | 93 | 323 | 77 | 302 | 1.19e-11 | 66.6 |
| Msa0332770 | MtrunA17_Chr2g0318831 | 36.364 | 121 | 69 | 5 | 93 | 205 | 76 | 196 | 1.46e-11 | 66.2 |
| Msa0332770 | MtrunA17_Chr3g0078521 | 25.284 | 352 | 189 | 15 | 91 | 394 | 73 | 398 | 2.12e-11 | 65.9 |
| Msa0332770 | MtrunA17_Chr3g0098791 | 32.867 | 143 | 74 | 7 | 93 | 214 | 81 | 222 | 2.63e-11 | 65.5 |
| Msa0332770 | MtrunA17_Chr4g0042421 | 26.765 | 340 | 187 | 20 | 93 | 394 | 73 | 388 | 3.05e-11 | 65.1 |
| Msa0332770 | MtrunA17_Chr8g0361261 | 23.333 | 330 | 206 | 13 | 93 | 394 | 106 | 416 | 3.20e-11 | 65.5 |
| Msa0332770 | MtrunA17_Chr7g0236121 | 24.496 | 347 | 206 | 16 | 90 | 399 | 74 | 401 | 3.84e-11 | 65.1 |
| Msa0332770 | MtrunA17_Chr7g0236201 | 24.496 | 347 | 206 | 16 | 90 | 399 | 74 | 401 | 4.16e-11 | 65.1 |
| Msa0332770 | MtrunA17_Chr7g0236161 | 24.496 | 347 | 206 | 16 | 90 | 399 | 74 | 401 | 4.78e-11 | 64.7 |
| Msa0332770 | MtrunA17_Chr8g0357821 | 37.607 | 117 | 64 | 4 | 93 | 200 | 89 | 205 | 5.07e-11 | 62.0 |
| Msa0332770 | MtrunA17_Chr4g0048721 | 23.988 | 346 | 192 | 15 | 93 | 394 | 80 | 398 | 6.17e-11 | 63.9 |
| Msa0332770 | MtrunA17_Chr4g0023221 | 26.685 | 371 | 179 | 20 | 93 | 405 | 101 | 436 | 6.17e-11 | 64.7 |
| Msa0332770 | MtrunA17_Chr4g0048691 | 27.246 | 345 | 182 | 18 | 93 | 394 | 96 | 414 | 6.49e-11 | 63.9 |
| Msa0332770 | MtrunA17_Chr4g0048641 | 25.994 | 327 | 177 | 16 | 93 | 394 | 98 | 384 | 6.64e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332770 | AT1G78860.1 | 47.962 | 417 | 187 | 9 | 11 | 405 | 3 | 411 | 2.78e-126 | 372 |
| Msa0332770 | AT1G78850.1 | 47.837 | 416 | 186 | 10 | 12 | 405 | 5 | 411 | 1.60e-124 | 367 |
| Msa0332770 | AT1G16905.1 | 44.810 | 395 | 182 | 7 | 28 | 405 | 24 | 399 | 5.66e-112 | 335 |
| Msa0332770 | AT1G78830.1 | 41.609 | 435 | 218 | 11 | 6 | 405 | 1 | 434 | 6.09e-108 | 325 |
| Msa0332770 | AT1G78820.1 | 40.233 | 430 | 221 | 11 | 11 | 405 | 6 | 434 | 4.84e-102 | 310 |
| Msa0332770 | AT5G35370.1 | 27.327 | 333 | 200 | 13 | 93 | 405 | 86 | 396 | 1.06e-23 | 103 |
| Msa0332770 | AT3G12000.1 | 28.261 | 368 | 214 | 16 | 63 | 399 | 56 | 404 | 8.24e-20 | 91.3 |
| Msa0332770 | AT4G00340.1 | 26.882 | 372 | 206 | 14 | 63 | 401 | 40 | 378 | 2.86e-19 | 90.5 |
| Msa0332770 | AT4G00340.2 | 26.882 | 372 | 206 | 14 | 63 | 401 | 40 | 378 | 2.98e-19 | 90.5 |
| Msa0332770 | AT4G21390.1 | 26.667 | 330 | 200 | 14 | 93 | 394 | 79 | 394 | 1.11e-18 | 89.0 |
| Msa0332770 | AT4G21390.2 | 26.667 | 330 | 200 | 14 | 93 | 394 | 79 | 394 | 1.42e-18 | 88.6 |
| Msa0332770 | AT5G24080.2 | 26.462 | 359 | 205 | 16 | 93 | 405 | 81 | 426 | 2.23e-18 | 87.8 |
| Msa0332770 | AT1G65790.3 | 26.625 | 323 | 202 | 11 | 92 | 394 | 78 | 385 | 6.42e-17 | 83.2 |
| Msa0332770 | AT1G65790.2 | 26.625 | 323 | 202 | 11 | 92 | 394 | 78 | 385 | 6.42e-17 | 83.2 |
| Msa0332770 | AT1G65790.1 | 26.625 | 323 | 202 | 11 | 92 | 394 | 78 | 385 | 6.89e-17 | 83.6 |
| Msa0332770 | AT4G32300.1 | 24.148 | 352 | 226 | 13 | 70 | 405 | 61 | 387 | 1.44e-16 | 82.4 |
| Msa0332770 | AT3G51710.1 | 26.471 | 306 | 196 | 11 | 102 | 403 | 103 | 383 | 6.00e-16 | 79.7 |
| Msa0332770 | AT4G11900.10 | 27.446 | 368 | 187 | 18 | 93 | 405 | 81 | 423 | 7.88e-15 | 76.6 |
| Msa0332770 | AT4G11900.5 | 27.446 | 368 | 187 | 18 | 93 | 405 | 81 | 423 | 7.88e-15 | 76.6 |
| Msa0332770 | AT1G11330.3 | 25.882 | 340 | 201 | 16 | 93 | 398 | 84 | 406 | 8.18e-15 | 77.0 |
| Msa0332770 | AT4G11900.6 | 27.446 | 368 | 187 | 18 | 93 | 405 | 81 | 423 | 8.23e-15 | 77.0 |
| Msa0332770 | AT4G11900.4 | 27.446 | 368 | 187 | 18 | 93 | 405 | 81 | 423 | 8.23e-15 | 77.0 |
| Msa0332770 | AT4G11900.2 | 27.446 | 368 | 187 | 18 | 93 | 405 | 81 | 423 | 8.49e-15 | 76.6 |
| Msa0332770 | AT4G11900.3 | 27.446 | 368 | 187 | 18 | 93 | 405 | 81 | 423 | 8.49e-15 | 76.6 |
| Msa0332770 | AT4G11900.1 | 27.174 | 368 | 188 | 17 | 93 | 405 | 81 | 423 | 8.78e-15 | 77.0 |
| Msa0332770 | AT4G11900.7 | 27.446 | 368 | 187 | 18 | 93 | 405 | 81 | 423 | 9.88e-15 | 76.6 |
| Msa0332770 | AT4G11900.8 | 27.446 | 368 | 187 | 18 | 93 | 405 | 12 | 354 | 1.07e-14 | 76.3 |
| Msa0332770 | AT1G11330.2 | 25.882 | 340 | 201 | 16 | 93 | 398 | 84 | 406 | 1.09e-14 | 76.6 |
| Msa0332770 | AT4G11900.9 | 27.446 | 368 | 187 | 18 | 93 | 405 | 12 | 354 | 1.13e-14 | 76.6 |
| Msa0332770 | AT1G11330.1 | 25.882 | 340 | 201 | 16 | 93 | 398 | 84 | 406 | 1.26e-14 | 76.3 |
| Msa0332770 | AT4G21380.2 | 26.061 | 330 | 199 | 12 | 92 | 394 | 80 | 391 | 3.03e-14 | 75.1 |
| Msa0332770 | AT4G21380.1 | 26.061 | 330 | 199 | 12 | 92 | 394 | 80 | 391 | 3.60e-14 | 75.1 |
| Msa0332770 | AT2G41890.1 | 28.115 | 313 | 189 | 14 | 103 | 399 | 91 | 383 | 6.87e-14 | 73.9 |
| Msa0332770 | AT1G61360.1 | 26.331 | 338 | 194 | 16 | 93 | 396 | 69 | 385 | 2.09e-13 | 72.4 |
| Msa0332770 | AT2G19130.1 | 23.380 | 432 | 257 | 18 | 10 | 405 | 3 | 396 | 2.86e-13 | 72.0 |
| Msa0332770 | AT5G03700.1 | 23.203 | 306 | 195 | 10 | 113 | 405 | 109 | 387 | 3.35e-13 | 71.6 |
| Msa0332770 | AT1G65800.2 | 27.077 | 325 | 202 | 13 | 92 | 394 | 78 | 389 | 3.75e-13 | 71.6 |
| Msa0332770 | AT1G65800.1 | 27.077 | 325 | 202 | 13 | 92 | 394 | 78 | 389 | 4.34e-13 | 71.6 |
| Msa0332770 | AT1G11303.1 | 24.629 | 337 | 202 | 17 | 93 | 396 | 77 | 394 | 4.72e-13 | 71.6 |
| Msa0332770 | AT4G03230.5 | 26.829 | 328 | 178 | 18 | 113 | 405 | 30 | 330 | 5.25e-12 | 68.2 |
| Msa0332770 | AT1G61610.2 | 25.220 | 341 | 195 | 17 | 93 | 394 | 79 | 398 | 5.90e-12 | 68.2 |
| Msa0332770 | AT1G61610.1 | 25.220 | 341 | 195 | 17 | 93 | 394 | 79 | 398 | 6.19e-12 | 68.2 |
| Msa0332770 | AT1G11300.2 | 23.512 | 336 | 201 | 15 | 93 | 393 | 77 | 391 | 7.58e-12 | 67.8 |
| Msa0332770 | AT1G11300.1 | 23.512 | 336 | 201 | 15 | 93 | 393 | 77 | 391 | 8.65e-12 | 67.4 |
| Msa0332770 | AT1G11410.1 | 23.864 | 352 | 190 | 19 | 93 | 398 | 72 | 391 | 3.56e-11 | 65.5 |
| Msa0332770 | AT1G11410.3 | 23.864 | 352 | 190 | 19 | 93 | 398 | 48 | 367 | 3.59e-11 | 65.5 |
| Msa0332770 | AT1G11410.4 | 23.864 | 352 | 190 | 19 | 93 | 398 | 79 | 398 | 3.70e-11 | 65.5 |
Find 76 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGAGATGTGGAAAATT+TGG | 0.163981 | 2_4:+50043567 | Msa0332770:CDS |
| GTGCTAGAGTGAAGGCATTT+TGG | 0.194306 | 2_4:-50042849 | None:intergenic |
| ATCTTCAAATTTGTCAATTC+AGG | 0.207413 | 2_4:+50042733 | Msa0332770:CDS |
| AAAGGCAACAACGCCTTTAT+TGG | 0.229321 | 2_4:-50043031 | None:intergenic |
| CCTCTGGAGAATGGAATATT+TGG | 0.242972 | 2_4:+50043621 | Msa0332770:CDS |
| TGGTCCTTATAGTTTGGTTT+TGG | 0.289630 | 2_4:+50043215 | Msa0332770:CDS |
| AATCCATACTCAAATGATTC+TGG | 0.297053 | 2_4:-50043342 | None:intergenic |
| CAGAGAGATGTGGAAAATTT+GGG | 0.298081 | 2_4:+50043568 | Msa0332770:CDS |
| ATAGTAGTTTAACATATCTT+AGG | 0.306428 | 2_4:+50043427 | Msa0332770:CDS |
| ATTCTAAAGGTAAATTTGTT+TGG | 0.320757 | 2_4:+50043088 | Msa0332770:CDS |
| GTTGCCAATTCTACCACTTT+TGG | 0.323929 | 2_4:+50043375 | Msa0332770:CDS |
| GATCCAGAATCATTTGAGTA+TGG | 0.330989 | 2_4:+50043339 | Msa0332770:CDS |
| TTTACCAAAAGTGGTAGAAT+TGG | 0.337784 | 2_4:-50043379 | None:intergenic |
| TATCTTAGGCTTGGAATTGA+TGG | 0.341629 | 2_4:+50043441 | Msa0332770:CDS |
| CATAATCACTGTTTCATTCC+AGG | 0.343718 | 2_4:+50042807 | Msa0332770:CDS |
| ATAAAGGCGTTGTTGCCTTT+AGG | 0.347561 | 2_4:+50043034 | Msa0332770:CDS |
| TAATACAAAGCCAAACCTTT+AGG | 0.354199 | 2_4:-50043240 | None:intergenic |
| CAAACAAACACCTCCAATAA+AGG | 0.357643 | 2_4:+50043018 | Msa0332770:CDS |
| TGTTGATGGTCCTTATAGTT+TGG | 0.357941 | 2_4:+50043209 | Msa0332770:CDS |
| GATGAATCCATTGTAGAATA+TGG | 0.358322 | 2_4:+50042763 | Msa0332770:CDS |
| AAGTGTAGTCCTAAGCCTTT+AGG | 0.361000 | 2_4:+50043654 | Msa0332770:CDS |
| GGCTCCAAAACCAAACTATA+AGG | 0.363469 | 2_4:-50043219 | None:intergenic |
| TAGATGTTCAAGATGGTGTT+TGG | 0.367668 | 2_4:+50043490 | Msa0332770:CDS |
| TGTATTATAAGAGTAAATAT+TGG | 0.368951 | 2_4:+50043256 | Msa0332770:CDS |
| GATCAATATTTAAAACCTAA+TGG | 0.372051 | 2_4:+50043147 | Msa0332770:CDS |
| TTAAATATTGATCAACCAAA+AGG | 0.385064 | 2_4:-50043137 | None:intergenic |
| GTCCTTCAAAACTTGTTAGT+AGG | 0.397669 | 2_4:+50043169 | Msa0332770:CDS |
| TCATCCTACAGATACCCTTT+TGG | 0.400336 | 2_4:+50043122 | Msa0332770:CDS |
| TAAAGTGAGAAAAGAGGCTT+TGG | 0.407758 | 2_4:-50042656 | None:intergenic |
| TTTCATTACTACAAAATTGA+AGG | 0.410194 | 2_4:+50043699 | Msa0332770:CDS |
| GCCTTTAGGTTACTCTCAAA+TGG | 0.414987 | 2_4:+50043048 | Msa0332770:CDS |
| TATATGATCAAATACACTAT+TGG | 0.435441 | 2_4:+50043732 | Msa0332770:CDS |
| CCCAACACACTTGCAATCCT+TGG | 0.436348 | 2_4:-50043793 | None:intergenic |
| AGTTTAACATATCTTAGGCT+TGG | 0.448455 | 2_4:+50043432 | Msa0332770:CDS |
| AACACCTTGAGTCATCCTTA+TGG | 0.455333 | 2_4:-50043824 | None:intergenic |
| AGAAAAGAGGCTTTGGAGAG+AGG | 0.458136 | 2_4:-50042649 | None:intergenic |
| TGTTGGGTATTTCTACCATA+AGG | 0.465236 | 2_4:+50043809 | Msa0332770:CDS |
| CCAAGGATTGCAAGTGTGTT+GGG | 0.487333 | 2_4:+50043793 | Msa0332770:CDS |
| TTCACTCTAGCACTTCGAAT+GGG | 0.488713 | 2_4:+50042859 | Msa0332770:CDS |
| TTGGTAAAAGTATCATTGGT+AGG | 0.499228 | 2_4:+50043394 | Msa0332770:CDS |
| ATCAAATACACTATTGGTGA+TGG | 0.501238 | 2_4:+50043738 | Msa0332770:CDS |
| CATACTCCTCCTAAAGGCTT+AGG | 0.506091 | 2_4:-50043663 | None:intergenic |
| TAAATATTGATCAACCAAAA+GGG | 0.511119 | 2_4:-50043136 | None:intergenic |
| ACCATTTGAGAGTAACCTAA+AGG | 0.511899 | 2_4:-50043049 | None:intergenic |
| TGGAGGTAATTACAGAAGGA+TGG | 0.518177 | 2_4:+50042783 | Msa0332770:CDS |
| GGCAACAACGCCTTTATTGG+AGG | 0.528094 | 2_4:-50043028 | None:intergenic |
| GTTAAACTACTATTCTTCAC+TGG | 0.528281 | 2_4:-50043417 | None:intergenic |
| ATGCTGATGGAAGAATTGTT+TGG | 0.528512 | 2_4:+50042995 | Msa0332770:CDS |
| CTTGTGTTGGCTAATGCTGA+TGG | 0.532407 | 2_4:+50042982 | Msa0332770:CDS |
| GGATTAAGCGAAGTTAATTG+TGG | 0.533553 | 2_4:+50043759 | Msa0332770:CDS |
| TCAATGTGTTGGTTGTCCTC+TGG | 0.535016 | 2_4:+50043605 | Msa0332770:CDS |
| GTTGGTTGTCCTCTGGAGAA+TGG | 0.544761 | 2_4:+50043612 | Msa0332770:CDS |
| GCATTGCATACTCCTCCTAA+AGG | 0.549299 | 2_4:-50043669 | None:intergenic |
| TGGAGAATGGAATATTTGGT+TGG | 0.554960 | 2_4:+50043625 | Msa0332770:CDS |
| GGAGGTAATTACAGAAGGAT+GGG | 0.555281 | 2_4:+50042784 | Msa0332770:CDS |
| TGTGAGGATAATCAATGTGT+TGG | 0.560707 | 2_4:+50043594 | Msa0332770:CDS |
| CAATAATAAAGTGAGAAAAG+AGG | 0.566022 | 2_4:-50042662 | None:intergenic |
| AACGATTGCATGAGCAATGA+TGG | 0.566435 | 2_4:-50042698 | None:intergenic |
| ATTACCTCCATATTCTACAA+TGG | 0.570665 | 2_4:-50042770 | None:intergenic |
| ATAAGGATGACTCAAGGTGT+TGG | 0.572407 | 2_4:+50043826 | Msa0332770:CDS |
| ACCAAGGATTGCAAGTGTGT+TGG | 0.584572 | 2_4:+50043792 | Msa0332770:CDS |
| AATATGGAGGTAATTACAGA+AGG | 0.595926 | 2_4:+50042779 | Msa0332770:CDS |
| TGTAGTCCTAAGCCTTTAGG+AGG | 0.598203 | 2_4:+50043657 | Msa0332770:CDS |
| GTTACTCTCAAATGGTAACA+TGG | 0.602406 | 2_4:+50043056 | Msa0332770:CDS |
| CTTCACTCTAGCACTTCGAA+TGG | 0.608386 | 2_4:+50042858 | Msa0332770:CDS |
| TGGAAAATTTGGGCTTTGTG+AGG | 0.616742 | 2_4:+50043578 | Msa0332770:CDS |
| CATTCGAAGTGCTAGAGTGA+AGG | 0.617248 | 2_4:-50042857 | None:intergenic |
| TGTCAATTGCCAGAGAGATG+TGG | 0.617405 | 2_4:+50043558 | Msa0332770:CDS |
| TGGGTTTGGGAAGCAAATAG+AGG | 0.619163 | 2_4:+50042910 | Msa0332770:CDS |
| TGTTGATGGAAATCTTGTGT+TGG | 0.627952 | 2_4:+50042969 | Msa0332770:CDS |
| TCAACCAAAAGGGTATCTGT+AGG | 0.635839 | 2_4:-50043126 | None:intergenic |
| TTGTGGAAACAAATGTACCA+AGG | 0.648353 | 2_4:+50043776 | Msa0332770:CDS |
| GAATCCATTGTAGAATATGG+AGG | 0.662158 | 2_4:+50042766 | Msa0332770:CDS |
| CCAAATATTCCATTCTCCAG+AGG | 0.664062 | 2_4:-50043621 | None:intergenic |
| TCTACCATAAGGATGACTCA+AGG | 0.669490 | 2_4:+50043820 | Msa0332770:CDS |
| TCGAATGGGATTTGAAACGT+CGG | 0.694400 | 2_4:+50042873 | Msa0332770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTATAAGAGTAAATAT+TGG | + | chr2_4:50043256-50043275 | Msa0332770:CDS | 15.0% |
| !! | TGTATTATAAGAGTAAATAT+TGG | + | chr2_4:50043256-50043275 | Msa0332770:CDS | 15.0% |
| !!! | AATTTGAAGATTTCATTTTG+TGG | - | chr2_4:50042724-50042743 | None:intergenic | 20.0% |
| !!! | ATGGTTTTAATTGATTCTAA+AGG | + | chr2_4:50043075-50043094 | Msa0332770:CDS | 20.0% |
| !!! | ATTCTAAAGGTAAATTTGTT+TGG | + | chr2_4:50043088-50043107 | Msa0332770:CDS | 20.0% |
| !! | TAAATATTGATCAACCAAAA+GGG | - | chr2_4:50043139-50043158 | None:intergenic | 20.0% |
| !! | TTAAATATTGATCAACCAAA+AGG | - | chr2_4:50043140-50043159 | None:intergenic | 20.0% |
| !!! | GATCAATATTTAAAACCTAA+TGG | + | chr2_4:50043147-50043166 | Msa0332770:CDS | 20.0% |
| !! | ATAGTAGTTTAACATATCTT+AGG | + | chr2_4:50043427-50043446 | Msa0332770:CDS | 20.0% |
| !! | TTTCATTACTACAAAATTGA+AGG | + | chr2_4:50043699-50043718 | Msa0332770:CDS | 20.0% |
| !! | TATATGATCAAATACACTAT+TGG | + | chr2_4:50043732-50043751 | Msa0332770:CDS | 20.0% |
| !!! | AATTTGAAGATTTCATTTTG+TGG | - | chr2_4:50042724-50042743 | None:intergenic | 20.0% |
| !!! | ATGGTTTTAATTGATTCTAA+AGG | + | chr2_4:50043075-50043094 | Msa0332770:CDS | 20.0% |
| !!! | ATTCTAAAGGTAAATTTGTT+TGG | + | chr2_4:50043088-50043107 | Msa0332770:CDS | 20.0% |
| !! | TAAATATTGATCAACCAAAA+GGG | - | chr2_4:50043139-50043158 | None:intergenic | 20.0% |
| !! | TTAAATATTGATCAACCAAA+AGG | - | chr2_4:50043140-50043159 | None:intergenic | 20.0% |
| !!! | GATCAATATTTAAAACCTAA+TGG | + | chr2_4:50043147-50043166 | Msa0332770:CDS | 20.0% |
| !! | ATAGTAGTTTAACATATCTT+AGG | + | chr2_4:50043427-50043446 | Msa0332770:CDS | 20.0% |
| !! | TTTCATTACTACAAAATTGA+AGG | + | chr2_4:50043699-50043718 | Msa0332770:CDS | 20.0% |
| !! | TATATGATCAAATACACTAT+TGG | + | chr2_4:50043732-50043751 | Msa0332770:CDS | 20.0% |
| ! | CAATAATAAAGTGAGAAAAG+AGG | - | chr2_4:50042665-50042684 | None:intergenic | 25.0% |
| ! | ATCTTCAAATTTGTCAATTC+AGG | + | chr2_4:50042733-50042752 | Msa0332770:CDS | 25.0% |
| !!! | GAAAATGCAACTTTTTCATT+AGG | + | chr2_4:50042946-50042965 | Msa0332770:CDS | 25.0% |
| ! | TCAGAAAAAGAAAATGTTGA+TGG | + | chr2_4:50043195-50043214 | Msa0332770:CDS | 25.0% |
| !! | AATGATACTTTTACCAAAAG+TGG | - | chr2_4:50043391-50043410 | None:intergenic | 25.0% |
| !!! | ACTTTTGGTAAAAGTATCAT+TGG | + | chr2_4:50043390-50043409 | Msa0332770:CDS | 25.0% |
| !! | TATTTTCTAGATGTTCAAGA+TGG | + | chr2_4:50043483-50043502 | Msa0332770:CDS | 25.0% |
| ! | CAATAATAAAGTGAGAAAAG+AGG | - | chr2_4:50042665-50042684 | None:intergenic | 25.0% |
| ! | ATCTTCAAATTTGTCAATTC+AGG | + | chr2_4:50042733-50042752 | Msa0332770:CDS | 25.0% |
| !!! | GAAAATGCAACTTTTTCATT+AGG | + | chr2_4:50042946-50042965 | Msa0332770:CDS | 25.0% |
| ! | TCAGAAAAAGAAAATGTTGA+TGG | + | chr2_4:50043195-50043214 | Msa0332770:CDS | 25.0% |
| !! | AATGATACTTTTACCAAAAG+TGG | - | chr2_4:50043391-50043410 | None:intergenic | 25.0% |
| !!! | ACTTTTGGTAAAAGTATCAT+TGG | + | chr2_4:50043390-50043409 | Msa0332770:CDS | 25.0% |
| !! | TATTTTCTAGATGTTCAAGA+TGG | + | chr2_4:50043483-50043502 | Msa0332770:CDS | 25.0% |
| GATGAATCCATTGTAGAATA+TGG | + | chr2_4:50042763-50042782 | Msa0332770:CDS | 30.0% | |
| ATTACCTCCATATTCTACAA+TGG | - | chr2_4:50042773-50042792 | None:intergenic | 30.0% | |
| AATATGGAGGTAATTACAGA+AGG | + | chr2_4:50042779-50042798 | Msa0332770:CDS | 30.0% | |
| TAGTGTTGTAAAAACAAACC+TGG | - | chr2_4:50042828-50042847 | None:intergenic | 30.0% | |
| ! | AAGTTGCATTTTCATCAACT+GGG | - | chr2_4:50042939-50042958 | None:intergenic | 30.0% |
| ! | AAAGTTGCATTTTCATCAAC+TGG | - | chr2_4:50042940-50042959 | None:intergenic | 30.0% |
| !!! | ACTTTTTCATTAGGTGTTGA+TGG | + | chr2_4:50042955-50042974 | Msa0332770:CDS | 30.0% |
| TAATACAAAGCCAAACCTTT+AGG | - | chr2_4:50043243-50043262 | None:intergenic | 30.0% | |
| !!! | AATATTGGTTTTCATCTGCT+TGG | + | chr2_4:50043271-50043290 | Msa0332770:CDS | 30.0% |
| !! | GCTTGGTTTTCATTTGAAAA+AGG | + | chr2_4:50043288-50043307 | Msa0332770:CDS | 30.0% |
| AATCCATACTCAAATGATTC+TGG | - | chr2_4:50043345-50043364 | None:intergenic | 30.0% | |
| TTTACCAAAAGTGGTAGAAT+TGG | - | chr2_4:50043382-50043401 | None:intergenic | 30.0% | |
| !! | TTGGTAAAAGTATCATTGGT+AGG | + | chr2_4:50043394-50043413 | Msa0332770:CDS | 30.0% |
| GTTAAACTACTATTCTTCAC+TGG | - | chr2_4:50043420-50043439 | None:intergenic | 30.0% | |
| AGTTTAACATATCTTAGGCT+TGG | + | chr2_4:50043432-50043451 | Msa0332770:CDS | 30.0% | |
| ATCAAATACACTATTGGTGA+TGG | + | chr2_4:50043738-50043757 | Msa0332770:CDS | 30.0% | |
| GATGAATCCATTGTAGAATA+TGG | + | chr2_4:50042763-50042782 | Msa0332770:CDS | 30.0% | |
| ATTACCTCCATATTCTACAA+TGG | - | chr2_4:50042773-50042792 | None:intergenic | 30.0% | |
| AATATGGAGGTAATTACAGA+AGG | + | chr2_4:50042779-50042798 | Msa0332770:CDS | 30.0% | |
| TAGTGTTGTAAAAACAAACC+TGG | - | chr2_4:50042828-50042847 | None:intergenic | 30.0% | |
| ! | AAGTTGCATTTTCATCAACT+GGG | - | chr2_4:50042939-50042958 | None:intergenic | 30.0% |
| ! | AAAGTTGCATTTTCATCAAC+TGG | - | chr2_4:50042940-50042959 | None:intergenic | 30.0% |
| !!! | ACTTTTTCATTAGGTGTTGA+TGG | + | chr2_4:50042955-50042974 | Msa0332770:CDS | 30.0% |
| TAATACAAAGCCAAACCTTT+AGG | - | chr2_4:50043243-50043262 | None:intergenic | 30.0% | |
| !!! | AATATTGGTTTTCATCTGCT+TGG | + | chr2_4:50043271-50043290 | Msa0332770:CDS | 30.0% |
| !! | GCTTGGTTTTCATTTGAAAA+AGG | + | chr2_4:50043288-50043307 | Msa0332770:CDS | 30.0% |
| AATCCATACTCAAATGATTC+TGG | - | chr2_4:50043345-50043364 | None:intergenic | 30.0% | |
| TTTACCAAAAGTGGTAGAAT+TGG | - | chr2_4:50043382-50043401 | None:intergenic | 30.0% | |
| !! | TTGGTAAAAGTATCATTGGT+AGG | + | chr2_4:50043394-50043413 | Msa0332770:CDS | 30.0% |
| GTTAAACTACTATTCTTCAC+TGG | - | chr2_4:50043420-50043439 | None:intergenic | 30.0% | |
| AGTTTAACATATCTTAGGCT+TGG | + | chr2_4:50043432-50043451 | Msa0332770:CDS | 30.0% | |
| ATCAAATACACTATTGGTGA+TGG | + | chr2_4:50043738-50043757 | Msa0332770:CDS | 30.0% | |
| TAAAGTGAGAAAAGAGGCTT+TGG | - | chr2_4:50042659-50042678 | None:intergenic | 35.0% | |
| GAATCCATTGTAGAATATGG+AGG | + | chr2_4:50042766-50042785 | Msa0332770:CDS | 35.0% | |
| CATAATCACTGTTTCATTCC+AGG | + | chr2_4:50042807-50042826 | Msa0332770:CDS | 35.0% | |
| ! | TGTTGATGGAAATCTTGTGT+TGG | + | chr2_4:50042969-50042988 | Msa0332770:CDS | 35.0% |
| ATGCTGATGGAAGAATTGTT+TGG | + | chr2_4:50042995-50043014 | Msa0332770:CDS | 35.0% | |
| CAAACAAACACCTCCAATAA+AGG | + | chr2_4:50043018-50043037 | Msa0332770:CDS | 35.0% | |
| ACCATTTGAGAGTAACCTAA+AGG | - | chr2_4:50043052-50043071 | None:intergenic | 35.0% | |
| GTTACTCTCAAATGGTAACA+TGG | + | chr2_4:50043056-50043075 | Msa0332770:CDS | 35.0% | |
| !!! | ACAAGTTTTGAAGGACCATT+AGG | - | chr2_4:50043165-50043184 | None:intergenic | 35.0% |
| !! | GTCCTTCAAAACTTGTTAGT+AGG | + | chr2_4:50043169-50043188 | Msa0332770:CDS | 35.0% |
| !! | AGCCTACTAACAAGTTTTGA+AGG | - | chr2_4:50043174-50043193 | None:intergenic | 35.0% |
| !! | TGTTGATGGTCCTTATAGTT+TGG | + | chr2_4:50043209-50043228 | Msa0332770:CDS | 35.0% |
| !! | TGGTCCTTATAGTTTGGTTT+TGG | + | chr2_4:50043215-50043234 | Msa0332770:CDS | 35.0% |
| GATCCAGAATCATTTGAGTA+TGG | + | chr2_4:50043339-50043358 | Msa0332770:CDS | 35.0% | |
| TATCTTAGGCTTGGAATTGA+TGG | + | chr2_4:50043441-50043460 | Msa0332770:CDS | 35.0% | |
| TAGATGTTCAAGATGGTGTT+TGG | + | chr2_4:50043490-50043509 | Msa0332770:CDS | 35.0% | |
| CAGAGAGATGTGGAAAATTT+GGG | + | chr2_4:50043568-50043587 | Msa0332770:CDS | 35.0% | |
| TGTGAGGATAATCAATGTGT+TGG | + | chr2_4:50043594-50043613 | Msa0332770:CDS | 35.0% | |
| TGGAGAATGGAATATTTGGT+TGG | + | chr2_4:50043625-50043644 | Msa0332770:CDS | 35.0% | |
| GGATTAAGCGAAGTTAATTG+TGG | + | chr2_4:50043759-50043778 | Msa0332770:CDS | 35.0% | |
| TTGTGGAAACAAATGTACCA+AGG | + | chr2_4:50043776-50043795 | Msa0332770:CDS | 35.0% | |
| ! | TGTTGGGTATTTCTACCATA+AGG | + | chr2_4:50043809-50043828 | Msa0332770:CDS | 35.0% |
| TAAAGTGAGAAAAGAGGCTT+TGG | - | chr2_4:50042659-50042678 | None:intergenic | 35.0% | |
| GAATCCATTGTAGAATATGG+AGG | + | chr2_4:50042766-50042785 | Msa0332770:CDS | 35.0% | |
| CATAATCACTGTTTCATTCC+AGG | + | chr2_4:50042807-50042826 | Msa0332770:CDS | 35.0% | |
| ! | TGTTGATGGAAATCTTGTGT+TGG | + | chr2_4:50042969-50042988 | Msa0332770:CDS | 35.0% |
| ATGCTGATGGAAGAATTGTT+TGG | + | chr2_4:50042995-50043014 | Msa0332770:CDS | 35.0% | |
| CAAACAAACACCTCCAATAA+AGG | + | chr2_4:50043018-50043037 | Msa0332770:CDS | 35.0% | |
| ACCATTTGAGAGTAACCTAA+AGG | - | chr2_4:50043052-50043071 | None:intergenic | 35.0% | |
| GTTACTCTCAAATGGTAACA+TGG | + | chr2_4:50043056-50043075 | Msa0332770:CDS | 35.0% | |
| !!! | ACAAGTTTTGAAGGACCATT+AGG | - | chr2_4:50043165-50043184 | None:intergenic | 35.0% |
| !! | GTCCTTCAAAACTTGTTAGT+AGG | + | chr2_4:50043169-50043188 | Msa0332770:CDS | 35.0% |
| !! | AGCCTACTAACAAGTTTTGA+AGG | - | chr2_4:50043174-50043193 | None:intergenic | 35.0% |
| !! | TGTTGATGGTCCTTATAGTT+TGG | + | chr2_4:50043209-50043228 | Msa0332770:CDS | 35.0% |
| !! | TGGTCCTTATAGTTTGGTTT+TGG | + | chr2_4:50043215-50043234 | Msa0332770:CDS | 35.0% |
| GATCCAGAATCATTTGAGTA+TGG | + | chr2_4:50043339-50043358 | Msa0332770:CDS | 35.0% | |
| TATCTTAGGCTTGGAATTGA+TGG | + | chr2_4:50043441-50043460 | Msa0332770:CDS | 35.0% | |
| TAGATGTTCAAGATGGTGTT+TGG | + | chr2_4:50043490-50043509 | Msa0332770:CDS | 35.0% | |
| CAGAGAGATGTGGAAAATTT+GGG | + | chr2_4:50043568-50043587 | Msa0332770:CDS | 35.0% | |
| TGTGAGGATAATCAATGTGT+TGG | + | chr2_4:50043594-50043613 | Msa0332770:CDS | 35.0% | |
| TGGAGAATGGAATATTTGGT+TGG | + | chr2_4:50043625-50043644 | Msa0332770:CDS | 35.0% | |
| GGATTAAGCGAAGTTAATTG+TGG | + | chr2_4:50043759-50043778 | Msa0332770:CDS | 35.0% | |
| TTGTGGAAACAAATGTACCA+AGG | + | chr2_4:50043776-50043795 | Msa0332770:CDS | 35.0% | |
| ! | TGTTGGGTATTTCTACCATA+AGG | + | chr2_4:50043809-50043828 | Msa0332770:CDS | 35.0% |
| AACGATTGCATGAGCAATGA+TGG | - | chr2_4:50042701-50042720 | None:intergenic | 40.0% | |
| TGGAGGTAATTACAGAAGGA+TGG | + | chr2_4:50042783-50042802 | Msa0332770:CDS | 40.0% | |
| GGAGGTAATTACAGAAGGAT+GGG | + | chr2_4:50042784-50042803 | Msa0332770:CDS | 40.0% | |
| !!! | TGCTAGAGTGAAGGCATTTT+GGG | - | chr2_4:50042851-50042870 | None:intergenic | 40.0% |
| TTCACTCTAGCACTTCGAAT+GGG | + | chr2_4:50042859-50042878 | Msa0332770:CDS | 40.0% | |
| ! | TCGAATGGGATTTGAAACGT+CGG | + | chr2_4:50042873-50042892 | Msa0332770:CDS | 40.0% |
| ! | AAACGTCGGAAGAGCTTTTT+CGG | + | chr2_4:50042887-50042906 | Msa0332770:CDS | 40.0% |
| AAAGGCAACAACGCCTTTAT+TGG | - | chr2_4:50043034-50043053 | None:intergenic | 40.0% | |
| !! | ATAAAGGCGTTGTTGCCTTT+AGG | + | chr2_4:50043034-50043053 | Msa0332770:CDS | 40.0% |
| ! | GCCTTTAGGTTACTCTCAAA+TGG | + | chr2_4:50043048-50043067 | Msa0332770:CDS | 40.0% |
| ! | TCATCCTACAGATACCCTTT+TGG | + | chr2_4:50043122-50043141 | Msa0332770:CDS | 40.0% |
| !! | TCAACCAAAAGGGTATCTGT+AGG | - | chr2_4:50043129-50043148 | None:intergenic | 40.0% |
| GGCTCCAAAACCAAACTATA+AGG | - | chr2_4:50043222-50043241 | None:intergenic | 40.0% | |
| !!! | AGTTTGGTTTTGGAGCCTAA+AGG | + | chr2_4:50043225-50043244 | Msa0332770:CDS | 40.0% |
| ! | GTTGCCAATTCTACCACTTT+TGG | + | chr2_4:50043375-50043394 | Msa0332770:CDS | 40.0% |
| ! | CCAAATTTTCCACATCTCTC+TGG | - | chr2_4:50043570-50043589 | None:intergenic | 40.0% |
| CCAGAGAGATGTGGAAAATT+TGG | + | chr2_4:50043567-50043586 | Msa0332770:CDS | 40.0% | |
| ! | TGGAAAATTTGGGCTTTGTG+AGG | + | chr2_4:50043578-50043597 | Msa0332770:CDS | 40.0% |
| CCAAATATTCCATTCTCCAG+AGG | - | chr2_4:50043624-50043643 | None:intergenic | 40.0% | |
| ! | CCTCTGGAGAATGGAATATT+TGG | + | chr2_4:50043621-50043640 | Msa0332770:CDS | 40.0% |
| AAGTGTAGTCCTAAGCCTTT+AGG | + | chr2_4:50043654-50043673 | Msa0332770:CDS | 40.0% | |
| TCTACCATAAGGATGACTCA+AGG | + | chr2_4:50043820-50043839 | Msa0332770:CDS | 40.0% | |
| AACACCTTGAGTCATCCTTA+TGG | - | chr2_4:50043827-50043846 | None:intergenic | 40.0% | |
| ATAAGGATGACTCAAGGTGT+TGG | + | chr2_4:50043826-50043845 | Msa0332770:CDS | 40.0% | |
| AACGATTGCATGAGCAATGA+TGG | - | chr2_4:50042701-50042720 | None:intergenic | 40.0% | |
| TGGAGGTAATTACAGAAGGA+TGG | + | chr2_4:50042783-50042802 | Msa0332770:CDS | 40.0% | |
| GGAGGTAATTACAGAAGGAT+GGG | + | chr2_4:50042784-50042803 | Msa0332770:CDS | 40.0% | |
| !!! | TGCTAGAGTGAAGGCATTTT+GGG | - | chr2_4:50042851-50042870 | None:intergenic | 40.0% |
| TTCACTCTAGCACTTCGAAT+GGG | + | chr2_4:50042859-50042878 | Msa0332770:CDS | 40.0% | |
| ! | TCGAATGGGATTTGAAACGT+CGG | + | chr2_4:50042873-50042892 | Msa0332770:CDS | 40.0% |
| ! | AAACGTCGGAAGAGCTTTTT+CGG | + | chr2_4:50042887-50042906 | Msa0332770:CDS | 40.0% |
| AAAGGCAACAACGCCTTTAT+TGG | - | chr2_4:50043034-50043053 | None:intergenic | 40.0% | |
| !! | ATAAAGGCGTTGTTGCCTTT+AGG | + | chr2_4:50043034-50043053 | Msa0332770:CDS | 40.0% |
| ! | GCCTTTAGGTTACTCTCAAA+TGG | + | chr2_4:50043048-50043067 | Msa0332770:CDS | 40.0% |
| ! | TCATCCTACAGATACCCTTT+TGG | + | chr2_4:50043122-50043141 | Msa0332770:CDS | 40.0% |
| !! | TCAACCAAAAGGGTATCTGT+AGG | - | chr2_4:50043129-50043148 | None:intergenic | 40.0% |
| GGCTCCAAAACCAAACTATA+AGG | - | chr2_4:50043222-50043241 | None:intergenic | 40.0% | |
| !!! | AGTTTGGTTTTGGAGCCTAA+AGG | + | chr2_4:50043225-50043244 | Msa0332770:CDS | 40.0% |
| ! | GTTGCCAATTCTACCACTTT+TGG | + | chr2_4:50043375-50043394 | Msa0332770:CDS | 40.0% |
| ! | CCAAATTTTCCACATCTCTC+TGG | - | chr2_4:50043570-50043589 | None:intergenic | 40.0% |
| CCAGAGAGATGTGGAAAATT+TGG | + | chr2_4:50043567-50043586 | Msa0332770:CDS | 40.0% | |
| ! | TGGAAAATTTGGGCTTTGTG+AGG | + | chr2_4:50043578-50043597 | Msa0332770:CDS | 40.0% |
| CCAAATATTCCATTCTCCAG+AGG | - | chr2_4:50043624-50043643 | None:intergenic | 40.0% | |
| ! | CCTCTGGAGAATGGAATATT+TGG | + | chr2_4:50043621-50043640 | Msa0332770:CDS | 40.0% |
| AAGTGTAGTCCTAAGCCTTT+AGG | + | chr2_4:50043654-50043673 | Msa0332770:CDS | 40.0% | |
| TCTACCATAAGGATGACTCA+AGG | + | chr2_4:50043820-50043839 | Msa0332770:CDS | 40.0% | |
| AACACCTTGAGTCATCCTTA+TGG | - | chr2_4:50043827-50043846 | None:intergenic | 40.0% | |
| ATAAGGATGACTCAAGGTGT+TGG | + | chr2_4:50043826-50043845 | Msa0332770:CDS | 40.0% | |
| !! | AGAAAAGAGGCTTTGGAGAG+AGG | - | chr2_4:50042652-50042671 | None:intergenic | 45.0% |
| !!! | GTGCTAGAGTGAAGGCATTT+TGG | - | chr2_4:50042852-50042871 | None:intergenic | 45.0% |
| ! | CATTCGAAGTGCTAGAGTGA+AGG | - | chr2_4:50042860-50042879 | None:intergenic | 45.0% |
| CTTCACTCTAGCACTTCGAA+TGG | + | chr2_4:50042858-50042877 | Msa0332770:CDS | 45.0% | |
| !!! | AAGAGCTTTTTCGGTGGGTT+TGG | + | chr2_4:50042896-50042915 | Msa0332770:CDS | 45.0% |
| !!! | AGAGCTTTTTCGGTGGGTTT+GGG | + | chr2_4:50042897-50042916 | Msa0332770:CDS | 45.0% |
| TGGGTTTGGGAAGCAAATAG+AGG | + | chr2_4:50042910-50042929 | Msa0332770:CDS | 45.0% | |
| !! | CTTGTGTTGGCTAATGCTGA+TGG | + | chr2_4:50042982-50043001 | Msa0332770:CDS | 45.0% |
| !!! | GGTTTTGGAGCCTAAAGGTT+TGG | + | chr2_4:50043230-50043249 | Msa0332770:CDS | 45.0% |
| TGTCAATTGCCAGAGAGATG+TGG | + | chr2_4:50043558-50043577 | Msa0332770:CDS | 45.0% | |
| !! | TCAATGTGTTGGTTGTCCTC+TGG | + | chr2_4:50043605-50043624 | Msa0332770:CDS | 45.0% |
| TGTAGTCCTAAGCCTTTAGG+AGG | + | chr2_4:50043657-50043676 | Msa0332770:CDS | 45.0% | |
| CATACTCCTCCTAAAGGCTT+AGG | - | chr2_4:50043666-50043685 | None:intergenic | 45.0% | |
| GCATTGCATACTCCTCCTAA+AGG | - | chr2_4:50043672-50043691 | None:intergenic | 45.0% | |
| ACCAAGGATTGCAAGTGTGT+TGG | + | chr2_4:50043792-50043811 | Msa0332770:CDS | 45.0% | |
| CCAAGGATTGCAAGTGTGTT+GGG | + | chr2_4:50043793-50043812 | Msa0332770:CDS | 45.0% | |
| !! | AGAAAAGAGGCTTTGGAGAG+AGG | - | chr2_4:50042652-50042671 | None:intergenic | 45.0% |
| !!! | GTGCTAGAGTGAAGGCATTT+TGG | - | chr2_4:50042852-50042871 | None:intergenic | 45.0% |
| ! | CATTCGAAGTGCTAGAGTGA+AGG | - | chr2_4:50042860-50042879 | None:intergenic | 45.0% |
| CTTCACTCTAGCACTTCGAA+TGG | + | chr2_4:50042858-50042877 | Msa0332770:CDS | 45.0% | |
| !!! | AAGAGCTTTTTCGGTGGGTT+TGG | + | chr2_4:50042896-50042915 | Msa0332770:CDS | 45.0% |
| !!! | AGAGCTTTTTCGGTGGGTTT+GGG | + | chr2_4:50042897-50042916 | Msa0332770:CDS | 45.0% |
| TGGGTTTGGGAAGCAAATAG+AGG | + | chr2_4:50042910-50042929 | Msa0332770:CDS | 45.0% | |
| !! | CTTGTGTTGGCTAATGCTGA+TGG | + | chr2_4:50042982-50043001 | Msa0332770:CDS | 45.0% |
| !!! | GGTTTTGGAGCCTAAAGGTT+TGG | + | chr2_4:50043230-50043249 | Msa0332770:CDS | 45.0% |
| TGTCAATTGCCAGAGAGATG+TGG | + | chr2_4:50043558-50043577 | Msa0332770:CDS | 45.0% | |
| !! | TCAATGTGTTGGTTGTCCTC+TGG | + | chr2_4:50043605-50043624 | Msa0332770:CDS | 45.0% |
| TGTAGTCCTAAGCCTTTAGG+AGG | + | chr2_4:50043657-50043676 | Msa0332770:CDS | 45.0% | |
| CATACTCCTCCTAAAGGCTT+AGG | - | chr2_4:50043666-50043685 | None:intergenic | 45.0% | |
| GCATTGCATACTCCTCCTAA+AGG | - | chr2_4:50043672-50043691 | None:intergenic | 45.0% | |
| ACCAAGGATTGCAAGTGTGT+TGG | + | chr2_4:50043792-50043811 | Msa0332770:CDS | 45.0% | |
| CCAAGGATTGCAAGTGTGTT+GGG | + | chr2_4:50043793-50043812 | Msa0332770:CDS | 45.0% | |
| !!! | GTCGGAAGAGCTTTTTCGGT+GGG | + | chr2_4:50042891-50042910 | Msa0332770:CDS | 50.0% |
| GGCAACAACGCCTTTATTGG+AGG | - | chr2_4:50043031-50043050 | None:intergenic | 50.0% | |
| ! | GTTGGTTGTCCTCTGGAGAA+TGG | + | chr2_4:50043612-50043631 | Msa0332770:CDS | 50.0% |
| CCCAACACACTTGCAATCCT+TGG | - | chr2_4:50043796-50043815 | None:intergenic | 50.0% | |
| !!! | GTCGGAAGAGCTTTTTCGGT+GGG | + | chr2_4:50042891-50042910 | Msa0332770:CDS | 50.0% |
| GGCAACAACGCCTTTATTGG+AGG | - | chr2_4:50043031-50043050 | None:intergenic | 50.0% | |
| ! | GTTGGTTGTCCTCTGGAGAA+TGG | + | chr2_4:50043612-50043631 | Msa0332770:CDS | 50.0% |
| CCCAACACACTTGCAATCCT+TGG | - | chr2_4:50043796-50043815 | None:intergenic | 50.0% | |
| !!! | CGTCGGAAGAGCTTTTTCGG+TGG | + | chr2_4:50042890-50042909 | Msa0332770:CDS | 55.0% |
| !!! | CGTCGGAAGAGCTTTTTCGG+TGG | + | chr2_4:50042890-50042909 | Msa0332770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 50042637 | 50043854 | 50042637 | ID=Msa0332770;Name=Msa0332770 |
| chr2_4 | mRNA | 50042637 | 50043854 | 50042637 | ID=Msa0332770-mRNA-1;Parent=Msa0332770;Name=Msa0332770-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|405 |
| chr2_4 | exon | 50042637 | 50043854 | 50042637 | ID=Msa0332770-mRNA-1:exon:14947;Parent=Msa0332770-mRNA-1 |
| chr2_4 | CDS | 50042637 | 50043854 | 50042637 | ID=Msa0332770-mRNA-1:cds;Parent=Msa0332770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
