AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333020 MtrunA17_Chr2g0316241 94.611 334 14 2 3 335 5 335 0.0 610
Msa0333020 MtrunA17_Chr8g0360581 80.757 317 59 1 21 335 25 341 0.0 540
Msa0333020 MtrunA17_Chr4g0004991 36.641 262 149 7 74 321 22 280 5.99e-52 173
Msa0333020 MtrunA17_Chr4g0024631 35.496 262 152 7 74 321 135 393 2.61e-49 169
Msa0333020 MtrunA17_Chr3g0115251 34.307 274 162 8 61 320 110 379 8.69e-48 165
Msa0333020 MtrunA17_Chr2g0322591 34.483 261 155 6 74 321 131 388 4.76e-45 158
Msa0333020 MtrunA17_Chr4g0017871 38.095 231 121 7 108 321 10 235 2.26e-41 144
Msa0333020 MtrunA17_Chr5g0396961 33.043 230 143 6 76 298 113 338 4.36e-39 141
Msa0333020 MtrunA17_Chr3g0126221 32.114 246 153 6 69 309 106 342 2.45e-36 134
Msa0333020 MtrunA17_Chr1g0149521 35.622 233 134 9 72 297 115 338 2.67e-34 128
Msa0333020 MtrunA17_Chr5g0417441 26.000 200 140 3 81 278 390 583 1.61e-12 68.6
Msa0333020 MtrunA17_Chr4g0068981 24.710 259 180 6 74 325 391 641 4.49e-12 67.0
Msa0333020 MtrunA17_Chr2g0285521 21.930 228 161 5 74 293 438 656 5.59e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333020 AT1G53290.1 71.053 342 87 3 4 335 5 344 1.70e-179 500
Msa0333020 AT3G14960.1 72.107 337 86 4 3 335 10 342 3.46e-178 497
Msa0333020 AT2G26100.1 61.755 319 119 1 20 335 50 368 8.49e-140 401
Msa0333020 AT2G26100.2 71.130 239 69 0 73 311 106 344 3.12e-127 369
Msa0333020 AT1G11730.1 35.606 264 153 7 72 321 110 370 2.27e-49 169
Msa0333020 AT1G77810.2 35.496 262 154 7 74 322 112 371 3.68e-49 169
Msa0333020 AT1G77810.1 35.496 262 154 7 74 322 115 374 4.03e-49 169
Msa0333020 AT1G32930.1 36.900 271 150 8 69 321 118 385 7.16e-49 169
Msa0333020 AT1G33430.1 36.667 270 152 8 75 330 122 386 1.05e-48 168
Msa0333020 AT1G05170.2 34.601 263 155 7 73 321 134 393 1.80e-48 168
Msa0333020 AT1G22015.1 38.129 278 146 9 61 322 115 382 3.60e-47 164
Msa0333020 AT1G33430.2 35.740 277 153 9 75 330 122 394 3.04e-46 162
Msa0333020 AT4G26940.1 35.249 261 153 6 74 321 136 393 2.96e-45 159
Msa0333020 AT2G32430.1 35.115 262 153 7 74 321 137 395 1.18e-44 158
Msa0333020 AT1G05170.1 36.036 222 135 4 73 289 134 353 1.27e-44 156
Msa0333020 AT4G32120.1 34.981 263 152 9 45 296 82 336 2.96e-39 142
Msa0333020 AT5G53340.2 32.911 237 144 7 78 309 111 337 8.73e-37 135
Msa0333020 AT5G53340.1 32.489 237 146 6 78 309 111 338 1.11e-36 135
Msa0333020 AT1G33430.3 40.884 181 101 3 76 251 123 302 3.38e-35 130
Msa0333020 AT2G25300.2 36.564 227 129 8 76 295 40 258 4.55e-35 129
Msa0333020 AT2G25300.1 36.564 227 129 8 76 295 118 336 1.98e-34 129
Msa0333020 AT4G26940.2 40.278 144 83 2 74 215 136 278 2.14e-24 101
Msa0333020 AT1G27120.1 25.728 206 141 4 77 279 425 621 8.26e-13 69.7
Msa0333020 AT1G27120.2 25.728 206 141 4 77 279 394 590 8.60e-13 69.7
Msa0333020 AT1G26810.2 25.909 220 150 4 81 293 396 609 1.52e-12 68.9
Msa0333020 AT1G26810.1 25.909 220 150 4 81 293 396 609 1.52e-12 68.9
Msa0333020 AT5G62620.1 24.638 207 144 4 76 279 431 628 3.98e-12 67.8
Msa0333020 AT3G06440.1 25.941 239 149 7 76 300 370 594 1.59e-11 65.9
Msa0333020 AT3G06440.2 25.941 239 149 7 76 300 341 565 1.66e-11 65.5

Find 106 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAGCATTGTTATTATT+TGG 0.151450 2_4:+50569930 None:intergenic
CGAAGATGTCTGCACTTAAA+AGG 0.205693 2_4:-50568339 Msa0333020:CDS
TTTCTCATCCTTTACATATA+AGG 0.218163 2_4:+50564760 None:intergenic
TTCAATGATCCTTTCCAAAA+AGG 0.240859 2_4:+50564691 None:intergenic
CTAGATCCGTTCGCGTTGTT+TGG 0.244084 2_4:-50569690 Msa0333020:CDS
CAAACAACGCGAACGGATCT+AGG 0.247402 2_4:+50569691 None:intergenic
CTGATGATGACATATATTTA+AGG 0.264025 2_4:-50568108 Msa0333020:CDS
CCTATCGGCAACAACATTTC+TGG 0.290197 2_4:+50569639 None:intergenic
GTACATAGGATGCATGAAAA+AGG 0.293304 2_4:-50567938 Msa0333020:CDS
TTTCCAAGCAAATTAGATAA+TGG 0.334739 2_4:+50567311 None:intergenic
CATCGACATCAATCGCTGTT+TGG 0.338964 2_4:-50566311 Msa0333020:CDS
TACACTAACCATTTGAGTTT+CGG 0.341334 2_4:+50567898 None:intergenic
TAGATCCGTTCGCGTTGTTT+GGG 0.344788 2_4:-50569689 Msa0333020:CDS
TATTCATCAGATTCCATTGT+TGG 0.349171 2_4:+50564959 None:intergenic
TGGGATATTCCAAAGTGTTC+AGG 0.349634 2_4:-50566291 Msa0333020:intron
TCATGCATCCTATGTACGTC+TGG 0.353445 2_4:+50567944 None:intergenic
ATATGACGATTTCATTCAAT+TGG 0.361639 2_4:-50568305 Msa0333020:CDS
ACCGGAACTGTAAGAAGTTC+CGG 0.363589 2_4:+50569874 None:intergenic
TTTATCCTTATATTTAGTTC+AGG 0.364320 2_4:-50564927 Msa0333020:three_prime_UTR
ATCAGCTTTGACATAAAATT+CGG 0.372389 2_4:+50568126 None:intergenic
TGGTTTCCTTCCGATCCTAA+TGG 0.377181 2_4:-50569541 Msa0333020:CDS
ATCGACATCAATCGCTGTTT+GGG 0.381526 2_4:-50566310 Msa0333020:CDS
TTCCATTCCTCAACCACAAC+CGG 0.385003 2_4:-50569893 Msa0333020:five_prime_UTR
TGCCGATAGGCATAAGGTTA+TGG 0.390206 2_4:-50569626 Msa0333020:CDS
ACCGGAACTTCTTACAGTTC+CGG 0.391811 2_4:-50569875 Msa0333020:five_prime_UTR
GAGTTCCTGAACTAAATATA+AGG 0.393799 2_4:+50564922 None:intergenic
GCATTTGTCGGTATTCAGAC+TGG 0.399480 2_4:-50569604 Msa0333020:CDS
TGTCAAGCTTGGTCGCTCTT+AGG 0.399911 2_4:-50567235 Msa0333020:CDS
GAATGCAGCTGTCCATTTGA+TGG 0.400266 2_4:+50564987 None:intergenic
TAGTACCGTTGAAGTCCATT+AGG 0.400530 2_4:+50569526 None:intergenic
ATGAGAAAATATATATACTA+AGG 0.403664 2_4:-50564745 Msa0333020:three_prime_UTR
AGTTTCGGATCAGTGAAAAC+AGG 0.412422 2_4:+50567913 None:intergenic
ATTGATGTCGATGTACATTC+TGG 0.423236 2_4:+50566321 None:intergenic
AGCAATGAGGATGTTACAAT+TGG 0.423646 2_4:-50566399 Msa0333020:CDS
TTGGAAGGCGTGAATCTTTG+AGG 0.424287 2_4:-50569570 Msa0333020:CDS
TGCTGATGTTGTGTCAAGCT+TGG 0.426295 2_4:-50567246 Msa0333020:CDS
TGGTCGCTCTTAGGAATAAC+AGG 0.428844 2_4:-50567226 Msa0333020:intron
AGAAGTTCCGGTTGTGGTTG+AGG 0.429886 2_4:+50569886 None:intergenic
GAGCCATTATCTAATTTGCT+TGG 0.431342 2_4:-50567314 Msa0333020:CDS
GTTCGCGTTGTTTGGGATCA+CGG 0.448653 2_4:-50569682 Msa0333020:CDS
ATGGTTTGGAAGGCATTGTC+AGG 0.449095 2_4:+50569845 None:intergenic
GTGGTTGAGGAATGGAATAA+TGG 0.454082 2_4:+50569899 None:intergenic
CATAAGGTTATGGCATTTGT+CGG 0.466732 2_4:-50569616 Msa0333020:CDS
TGTTGTTGCCGATAGGCATA+AGG 0.472626 2_4:-50569632 Msa0333020:CDS
TCAGCAGAAAGAGCATATAT+AGG 0.474635 2_4:+50567263 None:intergenic
AATGTTGGAACTCCATCAAA+TGG 0.475957 2_4:-50564999 Msa0333020:CDS
TCCAGCTTGGAAGAAGCTAC+TGG 0.476169 2_4:-50568403 Msa0333020:intron
TCCCTTTACCTTCTTCAGGC+CGG 0.476767 2_4:-50564783 Msa0333020:three_prime_UTR
CGATGAGGAGTAAAAGGAGG+AGG 0.476875 2_4:+50569758 None:intergenic
AAATACAAACCTGAACACTT+TGG 0.478218 2_4:+50566282 None:intergenic
ATTTCTGGCGCCGTTGGTGA+CGG 0.479564 2_4:+50569654 None:intergenic
TCACTGATCCGAAACTCAAA+TGG 0.480790 2_4:-50567906 Msa0333020:intron
ATTATCTAATTTGCTTGGAA+AGG 0.483371 2_4:-50567309 Msa0333020:CDS
GGAGGAGGAAGGTGATGAGG+AGG 0.489252 2_4:+50569773 None:intergenic
CAGACTGGGTTTAGATCTGT+TGG 0.492313 2_4:-50569589 Msa0333020:CDS
GAAGATGTCTGCACTTAAAA+GGG 0.496040 2_4:-50568338 Msa0333020:CDS
TGAGAATCTGCGAAGGGGAA+TGG 0.496211 2_4:+50569804 None:intergenic
GTGTGACGTGGGTTGAAGAA+TGG 0.496529 2_4:+50569826 None:intergenic
ACGTGGGTTGAAGAATGGTT+TGG 0.499262 2_4:+50569831 None:intergenic
TTCCGGTTGTGGTTGAGGAA+TGG 0.501352 2_4:+50569891 None:intergenic
AACAACATTTCTGGCGCCGT+TGG 0.510437 2_4:+50569648 None:intergenic
GCCGGCCTGAAGAAGGTAAA+GGG 0.513753 2_4:+50564782 None:intergenic
GAGGAGTAAAAGGAGGAGGA+AGG 0.516677 2_4:+50569762 None:intergenic
CATTTGTCGGTATTCAGACT+GGG 0.517713 2_4:-50569603 Msa0333020:CDS
AAAGGAGGAGGAAGGTGATG+AGG 0.518968 2_4:+50569770 None:intergenic
AAACAACGCGAACGGATCTA+GGG 0.523178 2_4:+50569692 None:intergenic
GTGAATCTTTGAGGAAGACT+TGG 0.526407 2_4:-50569561 Msa0333020:CDS
CTTGGAAGAAGCTACTGGAT+TGG 0.527346 2_4:-50568398 Msa0333020:CDS
CGAAGGGGAATGGTGTGACG+TGG 0.533817 2_4:+50569814 None:intergenic
TCTCATTCCCAGACGTACAT+AGG 0.534214 2_4:-50567952 Msa0333020:CDS
CACGGCAACGCCGTCACCAA+CGG 0.537116 2_4:-50569664 Msa0333020:CDS
CATGCATCCTATGTACGTCT+GGG 0.539002 2_4:+50567945 None:intergenic
AAAGTTCATGAATATTCTCA+TGG 0.542243 2_4:+50566349 None:intergenic
TGCCATAACCTTATGCCTAT+CGG 0.542296 2_4:+50569624 None:intergenic
GATGACATATATTTAAGGCC+AGG 0.545400 2_4:-50568103 Msa0333020:intron
ATATAAGGCCGGCCTGAAGA+AGG 0.550875 2_4:+50564775 None:intergenic
CATTCAATTGGATATTGAAG+AGG 0.553721 2_4:-50568293 Msa0333020:CDS
TCATCCTTTACATATAAGGC+CGG 0.554286 2_4:+50564764 None:intergenic
ATGAGAAAGGTGGTGACGGA+GGG 0.555706 2_4:+50569994 None:intergenic
TAATCCAGAAAAGAGAATGT+TGG 0.561149 2_4:-50565014 Msa0333020:CDS
GGCCGGCCTGAAGAAGGTAA+AGG 0.567415 2_4:+50564781 None:intergenic
CAGGCCGGCCTTATATGTAA+AGG 0.570103 2_4:-50564768 Msa0333020:three_prime_UTR
AGGATGTTACAATTGGAGCT+TGG 0.574710 2_4:-50566392 Msa0333020:CDS
TGAGAAAATATATATACTAA+GGG 0.581214 2_4:-50564744 Msa0333020:three_prime_UTR
AAACGATGAGGAGTAAAAGG+AGG 0.582478 2_4:+50569755 None:intergenic
GATGAGAAAGGTGGTGACGG+AGG 0.590923 2_4:+50569993 None:intergenic
TGAAGAATGAGAATCTGCGA+AGG 0.595531 2_4:+50569797 None:intergenic
CCAGAAATGTTGTTGCCGAT+AGG 0.597294 2_4:-50569639 Msa0333020:CDS
ACTGTAAGAAGTTCCGGTTG+TGG 0.600300 2_4:+50569880 None:intergenic
GGGTTGAAGAATGGTTTGGA+AGG 0.603310 2_4:+50569835 None:intergenic
TGAAGTCCATTAGGATCGGA+AGG 0.604237 2_4:+50569535 None:intergenic
CTGGGTTTAGATCTGTTGGA+AGG 0.609512 2_4:-50569585 Msa0333020:CDS
CCGTTGAAGTCCATTAGGAT+CGG 0.614621 2_4:+50569531 None:intergenic
GAAGAATGAGAATCTGCGAA+GGG 0.627764 2_4:+50569798 None:intergenic
ATGAAGAATGAGAGAGACAG+TGG 0.628816 2_4:+50569963 None:intergenic
CCGATCCTAATGGACTTCAA+CGG 0.632210 2_4:-50569531 Msa0333020:intron
CTGCATTCAGAGTCCAACAA+TGG 0.632354 2_4:-50564972 Msa0333020:CDS
GTGATCCCAAACAACGCGAA+CGG 0.639513 2_4:+50569684 None:intergenic
GTTTCGGATCAGTGAAAACA+GGG 0.647891 2_4:+50567914 None:intergenic
AGTGGAACTGATGATGAGAA+AGG 0.654373 2_4:+50569981 None:intergenic
GCTTATTGTCTAAGCAAGCA+AGG 0.656075 2_4:-50570036 Msa0333020:five_prime_UTR
GAAGGGGAATGGTGTGACGT+GGG 0.674684 2_4:+50569815 None:intergenic
GATGATGAGAAAGGTGGTGA+CGG 0.680548 2_4:+50569990 None:intergenic
AAGAATGAGAATCTGCGAAG+GGG 0.692002 2_4:+50569799 None:intergenic
TAAAGATTAATGTATACACA+AGG 0.700571 2_4:+50564900 None:intergenic
GGAACTGATGATGAGAAAGG+TGG 0.730968 2_4:+50569984 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAACATTAAATTGTTT+TGG - chr2_4:50565739-50565758 Msa0333020:intron 10.0%
!!! AATTTATGAATCTTTAATTT+GGG - chr2_4:50567062-50567081 Msa0333020:intron 10.0%
!!! TTTTTTATTTGCTAATATTA+TGG + chr2_4:50568194-50568213 None:intergenic 10.0%
!!! TATATATTTTTAACATTTTG+TGG + chr2_4:50568487-50568506 None:intergenic 10.0%
!! TGTTAAAAATATATATATAG+AGG - chr2_4:50568492-50568511 Msa0333020:intron 10.0%
!! GAATTTATGAATCTTTAATT+TGG - chr2_4:50567061-50567080 Msa0333020:intron 15.0%
!! ATGTAATTTCCAATATTTAT+GGG - chr2_4:50567246-50567265 Msa0333020:CDS 15.0%
!! TATAAAGAATTAATGAACTA+GGG + chr2_4:50567932-50567951 None:intergenic 15.0%
!!! ACTGTGTTTTAAAAAATAAA+AGG + chr2_4:50568307-50568326 None:intergenic 15.0%
!!! ATTTTTTAAAACACAGTTTT+CGG - chr2_4:50568310-50568329 Msa0333020:CDS 15.0%
!! AAAAATATATATATAGAGGA+TGG - chr2_4:50568496-50568515 Msa0333020:intron 15.0%
!! TTAGATTAAAACAAAATAGA+TGG + chr2_4:50568569-50568588 None:intergenic 15.0%
!!! TCTATTTTGTTTTAATCTAA+CGG - chr2_4:50568569-50568588 Msa0333020:intron 15.0%
!! AAAATTACAGAAAAAAACTA+AGG + chr2_4:50569915-50569934 None:intergenic 15.0%
!! ATGAGAAAATATATATACTA+AGG - chr2_4:50569993-50570012 Msa0333020:five_prime_UTR 15.0%
!! TGAGAAAATATATATACTAA+GGG - chr2_4:50569994-50570013 Msa0333020:five_prime_UTR 15.0%
!!! ATCATAGCATTGTTATTATT+TGG + chr2_4:50564811-50564830 None:intergenic 20.0%
!!! TTGTTTTTATTGTAGTATTG+AGG - chr2_4:50565619-50565638 Msa0333020:intron 20.0%
!!! GTTTTACTTATCATTTTACT+TGG - chr2_4:50566187-50566206 Msa0333020:intron 20.0%
!!! ATTTAATGTACTTTTGTTAC+CGG - chr2_4:50566249-50566268 Msa0333020:intron 20.0%
!! AATAGGAATAAATCAATATG+AGG + chr2_4:50566312-50566331 None:intergenic 20.0%
!! AAAATATGGTCATTTATTAC+AGG - chr2_4:50566552-50566571 Msa0333020:intron 20.0%
!! GTAATAACAACATTAAAACT+AGG + chr2_4:50566683-50566702 None:intergenic 20.0%
!! TATGATAGGCATAAAATATT+TGG - chr2_4:50566929-50566948 Msa0333020:intron 20.0%
!! CATGTAATTTCCAATATTTA+TGG - chr2_4:50567245-50567264 Msa0333020:CDS 20.0%
!! TGTAATTTCCAATATTTATG+GGG - chr2_4:50567247-50567266 Msa0333020:CDS 20.0%
!! AAAAAGAAACTGAGAATTAA+CGG - chr2_4:50567768-50567787 Msa0333020:intron 20.0%
!! CTATAAAGAATTAATGAACT+AGG + chr2_4:50567933-50567952 None:intergenic 20.0%
!! AAGTATGATATTGTATGAAT+TGG + chr2_4:50568082-50568101 None:intergenic 20.0%
!! AACTTCATAACTATTCTTTA+AGG + chr2_4:50568109-50568128 None:intergenic 20.0%
!! AACTTTACATTCACAATTAT+AGG + chr2_4:50568279-50568298 None:intergenic 20.0%
!! AATAATTGAAAGAGTTACAT+AGG + chr2_4:50568844-50568863 None:intergenic 20.0%
!! TAACTCTTTCAATTATTTAC+TGG - chr2_4:50568847-50568866 Msa0333020:intron 20.0%
!!! AATCAGCATTTAATGATTTT+TGG - chr2_4:50569609-50569628 Msa0333020:CDS 20.0%
!!! TTTATCCTTATATTTAGTTC+AGG - chr2_4:50569811-50569830 Msa0333020:CDS 20.0%
!! TAAAGATTAATGTATACACA+AGG + chr2_4:50569841-50569860 None:intergenic 20.0%
!!! TTTCTGTAATTTTTCTTTTG+TGG - chr2_4:50569922-50569941 Msa0333020:five_prime_UTR 20.0%
!!! TACTAATCTCTTTTTTGTTG+AGG - chr2_4:50565230-50565249 Msa0333020:intron 25.0%
! ACATGTATAAGGAAGATTTA+TGG - chr2_4:50565371-50565390 Msa0333020:intron 25.0%
! GATTTATGGATTCTGTAATA+AGG - chr2_4:50565385-50565404 Msa0333020:intron 25.0%
!!! TTTCTCTGATAGTTTTTTCT+TGG + chr2_4:50565446-50565465 None:intergenic 25.0%
! AAACTATCAGAGAAACTATT+AGG - chr2_4:50565451-50565470 Msa0333020:intron 25.0%
! AGAAACTATTAGGAAAGATT+TGG - chr2_4:50565461-50565480 Msa0333020:intron 25.0%
! AGATTTGGAAATTAATGAGT+TGG - chr2_4:50565476-50565495 Msa0333020:intron 25.0%
! TTCTATCATACACCATATTT+CGG + chr2_4:50565503-50565522 None:intergenic 25.0%
!!! AATGTCGATGTTTTGATTTT+AGG - chr2_4:50565582-50565601 Msa0333020:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG - chr2_4:50565893-50565912 Msa0333020:intron 25.0%
! CAAATAAGTCAATCCAAATA+GGG - chr2_4:50565894-50565913 Msa0333020:intron 25.0%
! ATGTGATATTGTTTAATGAC+AGG - chr2_4:50566141-50566160 Msa0333020:intron 25.0%
!! TAAATGCAAATCGTTTTCAA+TGG - chr2_4:50566165-50566184 Msa0333020:intron 25.0%
! ATATGACGATTTCATTCAAT+TGG - chr2_4:50566433-50566452 Msa0333020:intron 25.0%
!! GTGTTTCTAAGCTAAAAATA+TGG - chr2_4:50566538-50566557 Msa0333020:intron 25.0%
!! ATCAGCTTTGACATAAAATT+CGG + chr2_4:50566615-50566634 None:intergenic 25.0%
!! CTGATGATGACATATATTTA+AGG - chr2_4:50566630-50566649 Msa0333020:intron 25.0%
! TTGCAAAAATCCTGATTATT+TGG + chr2_4:50566721-50566740 None:intergenic 25.0%
!! ATTTAGAACCCCATAAATAT+TGG + chr2_4:50567258-50567277 None:intergenic 25.0%
! TTTCCAAGCAAATTAGATAA+TGG + chr2_4:50567430-50567449 None:intergenic 25.0%
!!! ATTATCTAATTTGCTTGGAA+AGG - chr2_4:50567429-50567448 Msa0333020:intron 25.0%
! ATATATGTAGCATGCAAATA+AGG + chr2_4:50567601-50567620 None:intergenic 25.0%
! ACAATTATAGGAATATGGAA+GGG + chr2_4:50568267-50568286 None:intergenic 25.0%
! CATTCACAATTATAGGAATA+TGG + chr2_4:50568272-50568291 None:intergenic 25.0%
! AAAGTTCATGAATATTCTCA+TGG + chr2_4:50568392-50568411 None:intergenic 25.0%
!!! AAATACAACGCTGAATTTTT+TGG + chr2_4:50568723-50568742 None:intergenic 25.0%
! TTAAAAAAGAAGCTTAGAGT+TGG + chr2_4:50568789-50568808 None:intergenic 25.0%
! AAAGAACTGGATAATTACAT+AGG + chr2_4:50568905-50568924 None:intergenic 25.0%
!!! AACTTCTTATTTTGCTATCT+TGG - chr2_4:50568967-50568986 Msa0333020:intron 25.0%
!!! GTATTTTGAGATAAAAGCAA+CGG - chr2_4:50569108-50569127 Msa0333020:intron 25.0%
! AGGTGAATATTATCAATTTC+TGG + chr2_4:50569387-50569406 None:intergenic 25.0%
!! TTTCAACTTAACATTTGTTG+AGG - chr2_4:50569460-50569479 Msa0333020:intron 25.0%
! GGAGAATTACATAAGAAAAT+CGG + chr2_4:50569508-50569527 None:intergenic 25.0%
!!! CTTTTTTCTGAATGATGATT+TGG - chr2_4:50569677-50569696 Msa0333020:CDS 25.0%
! TTTCTCATCCTTTACATATA+AGG + chr2_4:50569981-50570000 None:intergenic 25.0%
!!! ACTATACCTTTTTTCCTTTT+TGG - chr2_4:50570033-50570052 Msa0333020:five_prime_UTR 25.0%
TGGTGTATGATAGAACATTA+TGG - chr2_4:50565508-50565527 Msa0333020:intron 30.0%
! TTGATTTGAAGTCTCATGTT+TGG - chr2_4:50565643-50565662 Msa0333020:intron 30.0%
TGTAATACACAACACAACTT+AGG + chr2_4:50565920-50565939 None:intergenic 30.0%
GTGTTGTGTATTACAAGAAT+TGG - chr2_4:50565925-50565944 Msa0333020:intron 30.0%
TACTTTGCATAGGTAATGAA+TGG + chr2_4:50565983-50566002 None:intergenic 30.0%
AATCAAAACCGACTAACATA+AGG + chr2_4:50566043-50566062 None:intergenic 30.0%
!!! TAGTCGGTTTTGATTGATTT+TGG - chr2_4:50566048-50566067 Msa0333020:intron 30.0%
!!! AGTCGGTTTTGATTGATTTT+GGG - chr2_4:50566049-50566068 Msa0333020:intron 30.0%
!!! TTGGCTTTTAGGTTTGTTAT+TGG - chr2_4:50566359-50566378 Msa0333020:CDS 30.0%
CATTCAATTGGATATTGAAG+AGG - chr2_4:50566445-50566464 Msa0333020:intron 30.0%
TATGGTCATTTATTACAGGT+TGG - chr2_4:50566556-50566575 Msa0333020:intron 30.0%
TACATAGGATGCATGAAAAA+GGG - chr2_4:50566801-50566820 Msa0333020:intron 30.0%
! TACACTAACCATTTGAGTTT+CGG + chr2_4:50566843-50566862 None:intergenic 30.0%
TGCCTATCATAAAGTGAAAT+GGG + chr2_4:50566920-50566939 None:intergenic 30.0%
ATGCCTATCATAAAGTGAAA+TGG + chr2_4:50566921-50566940 None:intergenic 30.0%
! AATGATTTTCATTCCCTTTG+AGG + chr2_4:50567130-50567149 None:intergenic 30.0%
GAAAACGAAAGAAACAAGAT+GGG + chr2_4:50567171-50567190 None:intergenic 30.0%
AGAAAACGAAAGAAACAAGA+TGG + chr2_4:50567172-50567191 None:intergenic 30.0%
AAACGTCTCAACATAAACTA+GGG - chr2_4:50567215-50567234 Msa0333020:intron 30.0%
!!! ATTGTTATCTGCCTCTTTTT+TGG - chr2_4:50567276-50567295 Msa0333020:CDS 30.0%
!!! TTGTTATCTGCCTCTTTTTT+GGG - chr2_4:50567277-50567296 Msa0333020:CDS 30.0%
! TCATTTTACAACCAGCATAT+TGG - chr2_4:50567355-50567374 Msa0333020:intron 30.0%
!!! GGCTTTTGGAGTAATTTTAT+CGG - chr2_4:50567385-50567404 Msa0333020:intron 30.0%
! GAGTATTTTCTTCATGCTTA+TGG - chr2_4:50567451-50567470 Msa0333020:intron 30.0%
CAAGTTGTAGACAAAGAAAA+GGG + chr2_4:50567540-50567559 None:intergenic 30.0%
! TTTTTCCACTATCTCACTTT+TGG - chr2_4:50567622-50567641 Msa0333020:intron 30.0%
AAAATCCAAAAGTGAGATAG+TGG + chr2_4:50567630-50567649 None:intergenic 30.0%
ATCTTTGTCAGAATTGTGTT+TGG - chr2_4:50567693-50567712 Msa0333020:intron 30.0%
ACTATATAAACCAAAGCAGA+TGG + chr2_4:50567735-50567754 None:intergenic 30.0%
TAAATCTCCAAGCAATTGAA+TGG + chr2_4:50568024-50568043 None:intergenic 30.0%
!!! TTGTTTTTGCCTTTTCACAA+AGG - chr2_4:50568153-50568172 Msa0333020:CDS 30.0%
ATCTTTGTTCCTTTGTGAAA+AGG + chr2_4:50568165-50568184 None:intergenic 30.0%
CACAATTATAGGAATATGGA+AGG + chr2_4:50568268-50568287 None:intergenic 30.0%
AAATACAAACCTGAACACTT+TGG + chr2_4:50568459-50568478 None:intergenic 30.0%
TAAGTCTATAGACTTACTCT+TGG + chr2_4:50568533-50568552 None:intergenic 30.0%
AAAGAGTTACATAGGCAAAT+CGG + chr2_4:50568836-50568855 None:intergenic 30.0%
! GTTTTTGAATTTCTACCTTG+AGG - chr2_4:50569027-50569046 Msa0333020:intron 30.0%
ATAAATCAAGAAACCTTGTG+TGG + chr2_4:50569071-50569090 None:intergenic 30.0%
TTTCTTGATTTATGTGTGAC+AGG - chr2_4:50569078-50569097 Msa0333020:intron 30.0%
TTCTTGATTTATGTGTGACA+GGG - chr2_4:50569079-50569098 Msa0333020:intron 30.0%
CTTGAAGATTGGATTCATTA+AGG - chr2_4:50569173-50569192 Msa0333020:intron 30.0%
AAGATTGGATTCATTAAGGT+AGG - chr2_4:50569177-50569196 Msa0333020:intron 30.0%
TAGGAAAACAAAAACATACG+TGG - chr2_4:50569196-50569215 Msa0333020:intron 30.0%
! ATTTTCTTTTTGACGAATCG+CGG + chr2_4:50569350-50569369 None:intergenic 30.0%
ATTCTCCAATTCTATTGCAT+TGG - chr2_4:50569521-50569540 Msa0333020:intron 30.0%
TGAATAACATAAGAGAGAGA+TGG + chr2_4:50569565-50569584 None:intergenic 30.0%
! TTTCTGAATGATGATTTGGA+TGG - chr2_4:50569681-50569700 Msa0333020:CDS 30.0%
TAATCCAGAAAAGAGAATGT+TGG - chr2_4:50569724-50569743 Msa0333020:CDS 30.0%
TATTCATCAGATTCCATTGT+TGG + chr2_4:50569782-50569801 None:intergenic 30.0%
GAGTTCCTGAACTAAATATA+AGG + chr2_4:50569819-50569838 None:intergenic 30.0%
!!! ACCTTTTTTCCTTTTTGGAA+AGG - chr2_4:50570038-50570057 Msa0333020:five_prime_UTR 30.0%
TCCTTTCCAAAAAGGAAAAA+AGG + chr2_4:50570042-50570061 None:intergenic 30.0%
GAAAAACGATGAGGAGTAAA+AGG + chr2_4:50564989-50565008 None:intergenic 35.0%
ACGGTTTAAGAAAAACGATG+AGG + chr2_4:50564998-50565017 None:intergenic 35.0%
!!! AGACAGCGATTGTTTTGAAA+CGG + chr2_4:50565017-50565036 None:intergenic 35.0%
CATAAGGTTATGGCATTTGT+CGG - chr2_4:50565122-50565141 Msa0333020:intron 35.0%
TTACCGTATTAGAGAGAGTT+AGG - chr2_4:50565310-50565329 Msa0333020:intron 35.0%
TACCGTATTAGAGAGAGTTA+GGG - chr2_4:50565311-50565330 Msa0333020:intron 35.0%
TACCCTAACTCTCTCTAATA+CGG + chr2_4:50565316-50565335 None:intergenic 35.0%
GTATGGTAGAAAACAAGCTT+AGG - chr2_4:50565340-50565359 Msa0333020:intron 35.0%
GAAAACAAGCTTAGGTGATT+TGG - chr2_4:50565348-50565367 Msa0333020:intron 35.0%
! AGGTGATTTGGACATGTATA+AGG - chr2_4:50565360-50565379 Msa0333020:intron 35.0%
GATTCTGTAATAAGGAGAGA+TGG - chr2_4:50565393-50565412 Msa0333020:intron 35.0%
ATAAGGAGAGATGGATCAAA+TGG - chr2_4:50565402-50565421 Msa0333020:intron 35.0%
! TAATGAGTTGGACCGAAATA+TGG - chr2_4:50565488-50565507 Msa0333020:intron 35.0%
CCAAAAACAAGACCACAAAA+GGG + chr2_4:50565957-50565976 None:intergenic 35.0%
TCCAAAAACAAGACCACAAA+AGG + chr2_4:50565958-50565977 None:intergenic 35.0%
GCATTATGCCTTATGTTAGT+CGG - chr2_4:50566032-50566051 Msa0333020:intron 35.0%
! TTTTGTTACCGGTGCAATTT+GGG - chr2_4:50566260-50566279 Msa0333020:intron 35.0%
GAAGATGTCTGCACTTAAAA+GGG - chr2_4:50566400-50566419 Msa0333020:CDS 35.0%
! TCAGAACACACGTTTTGTAT+GGG + chr2_4:50566484-50566503 None:intergenic 35.0%
! GATGACATATATTTAAGGCC+AGG - chr2_4:50566635-50566654 Msa0333020:intron 35.0%
CTTGAAAGAGCCAAATAATC+AGG - chr2_4:50566708-50566727 Msa0333020:intron 35.0%
GTACATAGGATGCATGAAAA+AGG - chr2_4:50566800-50566819 Msa0333020:intron 35.0%
ATCTTTAATTGTGTCCTTCC+TGG - chr2_4:50566866-50566885 Msa0333020:intron 35.0%
GGGTGAAAATTGAAAAGTTC+CGG + chr2_4:50566900-50566919 None:intergenic 35.0%
CACCCATTTCACTTTATGAT+AGG - chr2_4:50566915-50566934 Msa0333020:intron 35.0%
TAGATTACAACTACTGTCTG+TGG - chr2_4:50567039-50567058 Msa0333020:intron 35.0%
CTAGTTTATGTTGAGACGTT+TGG + chr2_4:50567216-50567235 None:intergenic 35.0%
CAAACGTCTCAACATAAACT+AGG - chr2_4:50567214-50567233 Msa0333020:intron 35.0%
AACGTCTCAACATAAACTAG+GGG - chr2_4:50567216-50567235 Msa0333020:intron 35.0%
!!! TGTTATCTGCCTCTTTTTTG+GGG - chr2_4:50567278-50567297 Msa0333020:CDS 35.0%
! TTTTCATTGTCGCTATAGAG+AGG + chr2_4:50567324-50567343 None:intergenic 35.0%
!!! ATATTGGCTTCTTTGGCTTT+TGG - chr2_4:50567371-50567390 Msa0333020:intron 35.0%
!! GAGCCATTATCTAATTTGCT+TGG - chr2_4:50567424-50567443 Msa0333020:intron 35.0%
! TCAGCAGAAAGAGCATATAT+AGG + chr2_4:50567478-50567497 None:intergenic 35.0%
GCAAGTTGTAGACAAAGAAA+AGG + chr2_4:50567541-50567560 None:intergenic 35.0%
ACACAATTCTGACAAAGATG+TGG + chr2_4:50567692-50567711 None:intergenic 35.0%
TTGTCAGAATTGTGTTTGGT+TGG - chr2_4:50567697-50567716 Msa0333020:intron 35.0%
AAATGAGCCATTCAATTGCT+TGG - chr2_4:50568014-50568033 Msa0333020:intron 35.0%
TCAATTGCTTGGAGATTTAG+TGG - chr2_4:50568025-50568044 Msa0333020:intron 35.0%
AAAGAAATATGCTCAGTGCA+TGG + chr2_4:50568051-50568070 None:intergenic 35.0%
TTATAGGAATATGGAAGGGA+GGG + chr2_4:50568263-50568282 None:intergenic 35.0%
ATTATAGGAATATGGAAGGG+AGG + chr2_4:50568264-50568283 None:intergenic 35.0%
AGCAATGAGGATGTTACAAT+TGG - chr2_4:50568339-50568358 Msa0333020:CDS 35.0%
ATTGATGTCGATGTACATTC+TGG + chr2_4:50568420-50568439 None:intergenic 35.0%
ATGAGGTGTGGAATATTGTT+TGG + chr2_4:50568620-50568639 None:intergenic 35.0%
AAAAAGAAGCTTAGAGTTGG+AGG + chr2_4:50568786-50568805 None:intergenic 35.0%
GAACTGGATAATTACATAGG+CGG + chr2_4:50568902-50568921 None:intergenic 35.0%
GTTGTTCAATGCAAAAGAAC+TGG + chr2_4:50568918-50568937 None:intergenic 35.0%
TCTTGATTTATGTGTGACAG+GGG - chr2_4:50569080-50569099 Msa0333020:intron 35.0%
! AGTTCCAACATTCTCTTTTC+TGG + chr2_4:50569731-50569750 None:intergenic 35.0%
AATGTTGGAACTCCATCAAA+TGG - chr2_4:50569739-50569758 Msa0333020:CDS 35.0%
! TTTTTCCCTTTACCTTCTTC+AGG - chr2_4:50569951-50569970 Msa0333020:five_prime_UTR 35.0%
TCATCCTTTACATATAAGGC+CGG + chr2_4:50569977-50569996 None:intergenic 35.0%
GCTTATTGTCTAAGCAAGCA+AGG - chr2_4:50564702-50564721 Msa0333020:three_prime_UTR 40.0%
! AGTGGAACTGATGATGAGAA+AGG + chr2_4:50564760-50564779 None:intergenic 40.0%
ATGAAGAATGAGAGAGACAG+TGG + chr2_4:50564778-50564797 None:intergenic 40.0%
GTGGTTGAGGAATGGAATAA+TGG + chr2_4:50564842-50564861 None:intergenic 40.0%
AAGAATGAGAATCTGCGAAG+GGG + chr2_4:50564942-50564961 None:intergenic 40.0%
GAAGAATGAGAATCTGCGAA+GGG + chr2_4:50564943-50564962 None:intergenic 40.0%
TGAAGAATGAGAATCTGCGA+AGG + chr2_4:50564944-50564963 None:intergenic 40.0%
AAACGATGAGGAGTAAAAGG+AGG + chr2_4:50564986-50565005 None:intergenic 40.0%
TGCCATAACCTTATGCCTAT+CGG + chr2_4:50565117-50565136 None:intergenic 40.0%
CATTTGTCGGTATTCAGACT+GGG - chr2_4:50565135-50565154 Msa0333020:intron 40.0%
! GTGAATCTTTGAGGAAGACT+TGG - chr2_4:50565177-50565196 Msa0333020:intron 40.0%
TAGTACCGTTGAAGTCCATT+AGG + chr2_4:50565215-50565234 None:intergenic 40.0%
AGATGGATCAAATGGAGGAT+AGG - chr2_4:50565410-50565429 Msa0333020:intron 40.0%
! AAACCTTTTCCCCACTAAGT+GGG + chr2_4:50565558-50565577 None:intergenic 40.0%
! AAAACCTTTTCCCCACTAAG+TGG + chr2_4:50565559-50565578 None:intergenic 40.0%
AACACAACTTAGGCCCTATT+TGG + chr2_4:50565910-50565929 None:intergenic 40.0%
! AATTGGAAGCTTCCCTTTTG+TGG - chr2_4:50565942-50565961 Msa0333020:intron 40.0%
!!! CCCTTTTGTGGTCTTGTTTT+TGG - chr2_4:50565954-50565973 Msa0333020:intron 40.0%
ATCCGTCTGAATCTAGCTAT+TGG - chr2_4:50566211-50566230 Msa0333020:intron 40.0%
GTCCAATAGCTAGATTCAGA+CGG + chr2_4:50566216-50566235 None:intergenic 40.0%
! CTTTTGTTACCGGTGCAATT+TGG - chr2_4:50566259-50566278 Msa0333020:intron 40.0%
TTTGTTACCGGTGCAATTTG+GGG - chr2_4:50566261-50566280 Msa0333020:intron 40.0%
TATTCCTATTGCTTCCAGCT+TGG - chr2_4:50566322-50566341 Msa0333020:CDS 40.0%
!!! AAGCTACTGGATTGGCTTTT+AGG - chr2_4:50566348-50566367 Msa0333020:CDS 40.0%
CGAAGATGTCTGCACTTAAA+AGG - chr2_4:50566399-50566418 Msa0333020:CDS 40.0%
! CTCAGAACACACGTTTTGTA+TGG + chr2_4:50566485-50566504 None:intergenic 40.0%
GTTTCGGATCAGTGAAAACA+GGG + chr2_4:50566827-50566846 None:intergenic 40.0%
AGTTTCGGATCAGTGAAAAC+AGG + chr2_4:50566828-50566847 None:intergenic 40.0%
TCACTGATCCGAAACTCAAA+TGG - chr2_4:50566832-50566851 Msa0333020:intron 40.0%
AAAGTTCCGGAAATTAAGCC+AGG + chr2_4:50566887-50566906 None:intergenic 40.0%
TTAAACTGTAGCAGCCTCAA+AGG - chr2_4:50567113-50567132 Msa0333020:intron 40.0%
TAAACTGTAGCAGCCTCAAA+GGG - chr2_4:50567114-50567133 Msa0333020:intron 40.0%
TTGAGACGTTTGGAGGAAAA+GGG + chr2_4:50567206-50567225 None:intergenic 40.0%
GTTTATGTTGAGACGTTTGG+AGG + chr2_4:50567213-50567232 None:intergenic 40.0%
ACTACATGACCCCAAAAAAG+AGG + chr2_4:50567290-50567309 None:intergenic 40.0%
!! AACCAGCATATTGGCTTCTT+TGG - chr2_4:50567364-50567383 Msa0333020:intron 40.0%
! ATTTTATCGGCAACTCTTGC+AGG - chr2_4:50567398-50567417 Msa0333020:intron 40.0%
TGACAAAGATGTGGAACAGA+CGG + chr2_4:50567683-50567702 None:intergenic 40.0%
GTTGTACACTATGAAACCCA+AGG + chr2_4:50567814-50567833 None:intergenic 40.0%
ATCAATGTATTGCAGTCCTG+AGG - chr2_4:50567852-50567871 Msa0333020:intron 40.0%
CAAAATTGACCATGAACCTC+AGG + chr2_4:50567871-50567890 None:intergenic 40.0%
TATAGGAATATGGAAGGGAG+GGG + chr2_4:50568262-50568281 None:intergenic 40.0%
! TTTTCGGATGTTCAGCAATG+AGG - chr2_4:50568326-50568345 Msa0333020:CDS 40.0%
AGGATGTTACAATTGGAGCT+TGG - chr2_4:50568346-50568365 Msa0333020:CDS 40.0%
ATCGACATCAATCGCTGTTT+GGG - chr2_4:50568428-50568447 Msa0333020:intron 40.0%
! TGGGATATTCCAAAGTGTTC+AGG - chr2_4:50568447-50568466 Msa0333020:intron 40.0%
!! AATCAATGGTTGATGAGGTG+TGG + chr2_4:50568632-50568651 None:intergenic 40.0%
! GGAACAATCAATGGTTGATG+AGG + chr2_4:50568637-50568656 None:intergenic 40.0%
GAACAATTGAAAGACGCTGA+AGG + chr2_4:50568658-50568677 None:intergenic 40.0%
!!! CGCTGAATTTTTTGGTCTGA+AGG + chr2_4:50568715-50568734 None:intergenic 40.0%
TATTTCAATTGCCTCTTCCC+TGG - chr2_4:50568738-50568757 Msa0333020:intron 40.0%
TATTTACTGGTGCACCTTCT+TGG - chr2_4:50568860-50568879 Msa0333020:intron 40.0%
CGGTTTAAATGATGCCAAGA+AGG + chr2_4:50568877-50568896 None:intergenic 40.0%
GGATAATTACATAGGCGGAT+CGG + chr2_4:50568897-50568916 None:intergenic 40.0%
AGAAGTTCAAAGCTGAGAGA+TGG + chr2_4:50568954-50568973 None:intergenic 40.0%
AGGGAAGATTGAAATCCTCA+AGG + chr2_4:50569045-50569064 None:intergenic 40.0%
AATCAAGAAACCTTGTGTGG+TGG + chr2_4:50569068-50569087 None:intergenic 40.0%
ACTCGGTAATGCTTGAAGAT+TGG - chr2_4:50569162-50569181 Msa0333020:intron 40.0%
! ACTGTATCGCTGTTGGTTAA+GGG + chr2_4:50569440-50569459 None:intergenic 40.0%
! AACTGTATCGCTGTTGGTTA+AGG + chr2_4:50569441-50569460 None:intergenic 40.0%
GTTGAAAACTGTATCGCTGT+TGG + chr2_4:50569447-50569466 None:intergenic 40.0%
GCTGTCCAATGCAATAGAAT+TGG + chr2_4:50569529-50569548 None:intergenic 40.0%
TTTGGATGGTGTTTACCTAC+AGG - chr2_4:50569695-50569714 Msa0333020:CDS 40.0%
GATGATGAGAAAGGTGGTGA+CGG + chr2_4:50564751-50564770 None:intergenic 45.0%
! GGAACTGATGATGAGAAAGG+TGG + chr2_4:50564757-50564776 None:intergenic 45.0%
TTCCATTCCTCAACCACAAC+CGG - chr2_4:50564845-50564864 Msa0333020:three_prime_UTR 45.0%
ACTGTAAGAAGTTCCGGTTG+TGG + chr2_4:50564861-50564880 None:intergenic 45.0%
ACCGGAACTTCTTACAGTTC+CGG - chr2_4:50564863-50564882 Msa0333020:three_prime_UTR 45.0%
ACCGGAACTGTAAGAAGTTC+CGG + chr2_4:50564867-50564886 None:intergenic 45.0%
!!! GGCATTGTCAGGTTTTAGAC+CGG + chr2_4:50564885-50564904 None:intergenic 45.0%
!! ATGGTTTGGAAGGCATTGTC+AGG + chr2_4:50564896-50564915 None:intergenic 45.0%
! GGGTTGAAGAATGGTTTGGA+AGG + chr2_4:50564906-50564925 None:intergenic 45.0%
! ACGTGGGTTGAAGAATGGTT+TGG + chr2_4:50564910-50564929 None:intergenic 45.0%
AAACAACGCGAACGGATCTA+GGG + chr2_4:50565049-50565068 None:intergenic 45.0%
TAGATCCGTTCGCGTTGTTT+GGG - chr2_4:50565049-50565068 Msa0333020:intron 45.0%
CCTATCGGCAACAACATTTC+TGG + chr2_4:50565102-50565121 None:intergenic 45.0%
CCAGAAATGTTGTTGCCGAT+AGG - chr2_4:50565099-50565118 Msa0333020:intron 45.0%
TGTTGTTGCCGATAGGCATA+AGG - chr2_4:50565106-50565125 Msa0333020:intron 45.0%
TGCCGATAGGCATAAGGTTA+TGG - chr2_4:50565112-50565131 Msa0333020:intron 45.0%
GCATTTGTCGGTATTCAGAC+TGG - chr2_4:50565134-50565153 Msa0333020:intron 45.0%
CAGACTGGGTTTAGATCTGT+TGG - chr2_4:50565149-50565168 Msa0333020:intron 45.0%
CTGGGTTTAGATCTGTTGGA+AGG - chr2_4:50565153-50565172 Msa0333020:intron 45.0%
! TTGGAAGGCGTGAATCTTTG+AGG - chr2_4:50565168-50565187 Msa0333020:intron 45.0%
TGGTTTCCTTCCGATCCTAA+TGG - chr2_4:50565197-50565216 Msa0333020:intron 45.0%
TGAAGTCCATTAGGATCGGA+AGG + chr2_4:50565206-50565225 None:intergenic 45.0%
CCGTTGAAGTCCATTAGGAT+CGG + chr2_4:50565210-50565229 None:intergenic 45.0%
!! CCGATCCTAATGGACTTCAA+CGG - chr2_4:50565207-50565226 Msa0333020:intron 45.0%
TTAGAGAGAGTTAGGGTAGC+AGG - chr2_4:50565318-50565337 Msa0333020:intron 45.0%
AGGAGAGATGGATCAAATGG+AGG - chr2_4:50565405-50565424 Msa0333020:intron 45.0%
ATCAAATGGAGGATAGGCAG+AGG - chr2_4:50565416-50565435 Msa0333020:intron 45.0%
! CACTGCTAGCTACTTTGCAT+AGG + chr2_4:50565993-50566012 None:intergenic 45.0%
TTTCAGACCCCAAATTGCAC+CGG + chr2_4:50566271-50566290 None:intergenic 45.0%
TCTTCCAAGCTGGAAGCAAT+AGG + chr2_4:50566329-50566348 None:intergenic 45.0%
CTTGGAAGAAGCTACTGGAT+TGG - chr2_4:50566340-50566359 Msa0333020:CDS 45.0%
GCCAGGTGCAATTTCTTTCA+GGG - chr2_4:50566652-50566671 Msa0333020:intron 45.0%
ACCCTGAAAGAAATTGCACC+TGG + chr2_4:50566656-50566675 None:intergenic 45.0%
TCTCATTCCCAGACGTACAT+AGG - chr2_4:50566786-50566805 Msa0333020:intron 45.0%
CATGCATCCTATGTACGTCT+GGG + chr2_4:50566796-50566815 None:intergenic 45.0%
TCATGCATCCTATGTACGTC+TGG + chr2_4:50566797-50566816 None:intergenic 45.0%
GTCCTTCCTGGCTTAATTTC+CGG - chr2_4:50566878-50566897 Msa0333020:intron 45.0%
TTCCGGAAATTAAGCCAGGA+AGG + chr2_4:50566883-50566902 None:intergenic 45.0%
TGAGACGTTTGGAGGAAAAG+GGG + chr2_4:50567205-50567224 None:intergenic 45.0%
GTTGAGACGTTTGGAGGAAA+AGG + chr2_4:50567207-50567226 None:intergenic 45.0%
AGCCAAAGAAGCCAATATGC+TGG + chr2_4:50567369-50567388 None:intergenic 45.0%
TGCTGATGTTGTGTCAAGCT+TGG - chr2_4:50567492-50567511 Msa0333020:intron 45.0%
TGGTCGCTCTTAGGAATAAC+AGG - chr2_4:50567512-50567531 Msa0333020:intron 45.0%
CAGAATTGTGTTTGGTTGGC+TGG - chr2_4:50567701-50567720 Msa0333020:intron 45.0%
ACGGAGATGTTCATGTCATG+TGG - chr2_4:50567787-50567806 Msa0333020:intron 45.0%
TGTTCATGTCATGTGGTCCT+TGG - chr2_4:50567794-50567813 Msa0333020:intron 45.0%
GTTCATGTCATGTGGTCCTT+GGG - chr2_4:50567795-50567814 Msa0333020:intron 45.0%
TATTGCAGTCCTGAGGTTCA+TGG - chr2_4:50567859-50567878 Msa0333020:intron 45.0%
! AACTTGCTCACTGCTCGATA+TGG + chr2_4:50567969-50567988 None:intergenic 45.0%
CATCGACATCAATCGCTGTT+TGG - chr2_4:50568427-50568446 Msa0333020:intron 45.0%
GACGCTGAAGGAACAATCAA+TGG + chr2_4:50568646-50568665 None:intergenic 45.0%
AAGAAGCTTAGAGTTGGAGG+TGG + chr2_4:50568783-50568802 None:intergenic 45.0%
! AAGAAACCTTGTGTGGTGGA+GGG + chr2_4:50569064-50569083 None:intergenic 45.0%
ACCGAAGAATGAACTCGACT+CGG - chr2_4:50569145-50569164 Msa0333020:intron 45.0%
ACCGAGTCGAGTTCATTCTT+CGG + chr2_4:50569149-50569168 None:intergenic 45.0%
GTGGTTGGGTATAGACGAAT+AGG + chr2_4:50569407-50569426 None:intergenic 45.0%
! CATTTGTTGAGGCACCTTCT+TGG - chr2_4:50569471-50569490 Msa0333020:intron 45.0%
TGGTCAGACATATGCACATG+TGG - chr2_4:50569629-50569648 Msa0333020:CDS 45.0%
TCTGGATTACAGAGACCTGT+AGG + chr2_4:50569713-50569732 None:intergenic 45.0%
GAATGCAGCTGTCCATTTGA+TGG + chr2_4:50569754-50569773 None:intergenic 45.0%
CTGCATTCAGAGTCCAACAA+TGG - chr2_4:50569766-50569785 Msa0333020:CDS 45.0%
!! ATGAGAAAGGTGGTGACGGA+GGG + chr2_4:50564747-50564766 None:intergenic 50.0%
TTCCGGTTGTGGTTGAGGAA+TGG + chr2_4:50564850-50564869 None:intergenic 50.0%
AGAAGTTCCGGTTGTGGTTG+AGG + chr2_4:50564855-50564874 None:intergenic 50.0%
! GTGTGACGTGGGTTGAAGAA+TGG + chr2_4:50564915-50564934 None:intergenic 50.0%
TGAGAATCTGCGAAGGGGAA+TGG + chr2_4:50564937-50564956 None:intergenic 50.0%
AAAGGAGGAGGAAGGTGATG+AGG + chr2_4:50564971-50564990 None:intergenic 50.0%
GAGGAGTAAAAGGAGGAGGA+AGG + chr2_4:50564979-50564998 None:intergenic 50.0%
CGATGAGGAGTAAAAGGAGG+AGG + chr2_4:50564983-50565002 None:intergenic 50.0%
CAAACAACGCGAACGGATCT+AGG + chr2_4:50565050-50565069 None:intergenic 50.0%
CTAGATCCGTTCGCGTTGTT+TGG - chr2_4:50565048-50565067 Msa0333020:intron 50.0%
GTGATCCCAAACAACGCGAA+CGG + chr2_4:50565057-50565076 None:intergenic 50.0%
! GTTCGCGTTGTTTGGGATCA+CGG - chr2_4:50565056-50565075 Msa0333020:intron 50.0%
!! AACAACATTTCTGGCGCCGT+TGG + chr2_4:50565093-50565112 None:intergenic 50.0%
GAGAGTTAGGGTAGCAGGTA+TGG - chr2_4:50565323-50565342 Msa0333020:intron 50.0%
!! TTTTCCCCACTAAGTGGGCT+CGG + chr2_4:50565553-50565572 None:intergenic 50.0%
TCCAGCTTGGAAGAAGCTAC+TGG - chr2_4:50566335-50566354 Msa0333020:CDS 50.0%
TCCAGTAGCTTCTTCCAAGC+TGG + chr2_4:50566339-50566358 None:intergenic 50.0%
GGCCAGGTGCAATTTCTTTC+AGG - chr2_4:50566651-50566670 Msa0333020:intron 50.0%
TGTCAAGCTTGGTCGCTCTT+AGG - chr2_4:50567503-50567522 Msa0333020:intron 50.0%
GGTCTGTAGACCATCTGCTT+TGG - chr2_4:50567722-50567741 Msa0333020:intron 50.0%
AGCTTAGAGTTGGAGGTGGT+GGG + chr2_4:50568779-50568798 None:intergenic 50.0%
AAGCTTAGAGTTGGAGGTGG+TGG + chr2_4:50568780-50568799 None:intergenic 50.0%
AATCTTCCCTCCACCACACA+AGG - chr2_4:50569055-50569074 Msa0333020:intron 50.0%
CAAGAAACCTTGTGTGGTGG+AGG + chr2_4:50569065-50569084 None:intergenic 50.0%
AAGTGCATTTCAGGGGGTTC+TGG + chr2_4:50569230-50569249 None:intergenic 50.0%
ACCCCCTGAAATGCACTTCA+AGG - chr2_4:50569232-50569251 Msa0333020:intron 50.0%
CCCTTGAAGTGCATTTCAGG+GGG + chr2_4:50569236-50569255 None:intergenic 50.0%
CCCCCTGAAATGCACTTCAA+GGG - chr2_4:50569233-50569252 Msa0333020:intron 50.0%
CCCCTTGAAGTGCATTTCAG+GGG + chr2_4:50569237-50569256 None:intergenic 50.0%
CCCCTGAAATGCACTTCAAG+GGG - chr2_4:50569234-50569253 Msa0333020:intron 50.0%
CCCCCTTGAAGTGCATTTCA+GGG + chr2_4:50569238-50569257 None:intergenic 50.0%
CCCTGAAATGCACTTCAAGG+GGG - chr2_4:50569235-50569254 Msa0333020:intron 50.0%
AGGGTTCGTGTGATGTGGTT+GGG + chr2_4:50569421-50569440 None:intergenic 50.0%
AAGGGTTCGTGTGATGTGGT+TGG + chr2_4:50569422-50569441 None:intergenic 50.0%
GGTTAAGGGTTCGTGTGATG+TGG + chr2_4:50569426-50569445 None:intergenic 50.0%
CGGTTTGAGAGATGCCAAGA+AGG + chr2_4:50569488-50569507 None:intergenic 50.0%
TCCCTTTACCTTCTTCAGGC+CGG - chr2_4:50569955-50569974 Msa0333020:five_prime_UTR 50.0%
ATATAAGGCCGGCCTGAAGA+AGG + chr2_4:50569966-50569985 None:intergenic 50.0%
! CAGGCCGGCCTTATATGTAA+AGG - chr2_4:50569970-50569989 Msa0333020:five_prime_UTR 50.0%
!! GATGAGAAAGGTGGTGACGG+AGG + chr2_4:50564748-50564767 None:intergenic 55.0%
GAAGGGGAATGGTGTGACGT+GGG + chr2_4:50564926-50564945 None:intergenic 55.0%
!! ATTTCTGGCGCCGTTGGTGA+CGG + chr2_4:50565087-50565106 None:intergenic 55.0%
! ACTAAGTGGGCTCGGCTACA+TGG + chr2_4:50565545-50565564 None:intergenic 55.0%
ATGTAGCCGAGCCCACTTAG+TGG - chr2_4:50565544-50565563 Msa0333020:intron 55.0%
TGTAGCCGAGCCCACTTAGT+GGG - chr2_4:50565545-50565564 Msa0333020:intron 55.0%
GAGCCCACTTAGTGGGGAAA+AGG - chr2_4:50565552-50565571 Msa0333020:intron 55.0%
GCTTAGAGTTGGAGGTGGTG+GGG + chr2_4:50568778-50568797 None:intergenic 55.0%
GCCCCCTTGAAGTGCATTTC+AGG + chr2_4:50569239-50569258 None:intergenic 55.0%
GCCGGCCTGAAGAAGGTAAA+GGG + chr2_4:50569959-50569978 None:intergenic 55.0%
CGAAGGGGAATGGTGTGACG+TGG + chr2_4:50564927-50564946 None:intergenic 60.0%
GGAGGAGGAAGGTGATGAGG+AGG + chr2_4:50564968-50564987 None:intergenic 60.0%
GTAGCCGAGCCCACTTAGTG+GGG - chr2_4:50565546-50565565 Msa0333020:intron 60.0%
GGAAGGGAGGGGACTGAACA+AGG + chr2_4:50568251-50568270 None:intergenic 60.0%
!! GTTGGAGGTGGTGGGGACAA+GGG + chr2_4:50568771-50568790 None:intergenic 60.0%
!! AGTTGGAGGTGGTGGGGACA+AGG + chr2_4:50568772-50568791 None:intergenic 60.0%
GGCCGGCCTGAAGAAGGTAA+AGG + chr2_4:50569960-50569979 None:intergenic 60.0%
CACGGCAACGCCGTCACCAA+CGG - chr2_4:50565074-50565093 Msa0333020:intron 65.0%
AGGGAGGGTAGCCAGGGAAG+AGG + chr2_4:50568752-50568771 None:intergenic 65.0%
GGGACAAGGGAGGGTAGCCA+GGG + chr2_4:50568758-50568777 None:intergenic 65.0%
!! GAGGTGGTGGGGACAAGGGA+GGG + chr2_4:50568767-50568786 None:intergenic 65.0%
GGGGACAAGGGAGGGTAGCC+AGG + chr2_4:50568759-50568778 None:intergenic 70.0%
!! GGAGGTGGTGGGGACAAGGG+AGG + chr2_4:50568768-50568787 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 50564693 50570067 50564693 ID=Msa0333020;Name=Msa0333020
chr2_4 mRNA 50564693 50570067 50564693 ID=Msa0333020-mRNA-1;Parent=Msa0333020;Name=Msa0333020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=207|1|1|1|1|1|7|265|335
chr2_4 exon 50564693 50565043 50564693 ID=Msa0333020-mRNA-1:exon:15098;Parent=Msa0333020-mRNA-1
chr2_4 exon 50566292 50566434 50566292 ID=Msa0333020-mRNA-1:exon:15097;Parent=Msa0333020-mRNA-1
chr2_4 exon 50567227 50567340 50567227 ID=Msa0333020-mRNA-1:exon:15096;Parent=Msa0333020-mRNA-1
chr2_4 exon 50567907 50568006 50567907 ID=Msa0333020-mRNA-1:exon:15095;Parent=Msa0333020-mRNA-1
chr2_4 exon 50568104 50568186 50568104 ID=Msa0333020-mRNA-1:exon:15094;Parent=Msa0333020-mRNA-1
chr2_4 exon 50568268 50568420 50568268 ID=Msa0333020-mRNA-1:exon:15093;Parent=Msa0333020-mRNA-1
chr2_4 exon 50569532 50570067 50569532 ID=Msa0333020-mRNA-1:exon:15092;Parent=Msa0333020-mRNA-1
chr2_4 five_prime_UTR 50569861 50570067 50569861 ID=Msa0333020-mRNA-1:five_prime_utr;Parent=Msa0333020-mRNA-1
chr2_4 CDS 50569532 50569860 50569532 ID=Msa0333020-mRNA-1:cds;Parent=Msa0333020-mRNA-1
chr2_4 CDS 50568268 50568420 50568268 ID=Msa0333020-mRNA-1:cds;Parent=Msa0333020-mRNA-1
chr2_4 CDS 50568104 50568186 50568104 ID=Msa0333020-mRNA-1:cds;Parent=Msa0333020-mRNA-1
chr2_4 CDS 50567907 50568006 50567907 ID=Msa0333020-mRNA-1:cds;Parent=Msa0333020-mRNA-1
chr2_4 CDS 50567227 50567340 50567227 ID=Msa0333020-mRNA-1:cds;Parent=Msa0333020-mRNA-1
chr2_4 CDS 50566292 50566434 50566292 ID=Msa0333020-mRNA-1:cds;Parent=Msa0333020-mRNA-1
chr2_4 CDS 50564958 50565043 50564958 ID=Msa0333020-mRNA-1:cds;Parent=Msa0333020-mRNA-1
chr2_4 three_prime_UTR 50564693 50564957 50564693 ID=Msa0333020-mRNA-1:three_prime_utr;Parent=Msa0333020-mRNA-1
Gene Sequence

>Msa0333020

ATGCCTTCCAAACCATTCTTCAACCCACGTCACACCATTCCCCTTCGCAGATTCTCATTCTTCATCCTCCTCATCACCTTCCTCCTCCTTTTACTCCTCATCGTTTTTCTTAAACCGTTTCAAAACAATCGCTGTCTCAACACTAACCCTAGATCCGTTCGCGTTGTTTGGGATCACGGCAACGCCGTCACCAACGGCGCCAGAAATGTTGTTGCCGATAGGCATAAGGTTATGGCATTTGTCGGTATTCAGACTGGGTTTAGATCTGTTGGAAGGCGTGAATCTTTGAGGAAGACTTGGTTTCCTTCCGATCCTAATGGACTTCAACGCTTGGAAGAAGCTACTGGATTGGCTTTTAGGTTTGTTATTGGTAGAACGAGTGATAGATCGAAGATGTCTGCACTTAAAAGGGAAATAGCTGAATATGACGATTTCATTCAATTGGATATTGAAGAGGAGTACAGTAAGCTCCCATACAAAACGTTGGCTTTCTTTAAAGCTGCTTACGCTCTTTTTGTAGCCGAATTTTATGTCAAAGCTGATGATGACATATATTTAAGGCCAGATCGTCTTTCATTACTGCTTGCAAAAGAGAGATCTCATTCCCAGACGTACATAGGATGCATGAAAAAGGGCCCTGTTTTCACTGATCCGAAACTCAAATGGTATGAGCCATTATCTAATTTGCTTGGAAAGGAGTATTTTCTTCATGCTTATGGTCCTATATATGCTCTTTCTGCTGATGTTGTGTCAAGCTTGGTCGCTCTTAGGAATAACAGTTTTCGGATGTTCAGCAATGAGGATGTTACAATTGGAGCTTGGATGCTTGCAATGAATGTCAACCATGAGAATATTCATGAACTTTGTTCTCCAGAATGTACATCGACATCAATCGCTGTTTGGGATATTCCAAAGTGTTCAGGTCTCTGTAATCCAGAAAAGAGAATGTTGGAACTCCATCAAATGGACAGCTGCATTCAGAGTCCAACAATGGAATCTGATGAATAG

Protein sequence

>Msa0333020

MPSKPFFNPRHTIPLRRFSFFILLITFLLLLLLIVFLKPFQNNRCLNTNPRSVRVVWDHGNAVTNGARNVVADRHKVMAFVGIQTGFRSVGRRESLRKTWFPSDPNGLQRLEEATGLAFRFVIGRTSDRSKMSALKREIAEYDDFIQLDIEEEYSKLPYKTLAFFKAAYALFVAEFYVKADDDIYLRPDRLSLLLAKERSHSQTYIGCMKKGPVFTDPKLKWYEPLSNLLGKEYFLHAYGPIYALSADVVSSLVALRNNSFRMFSNEDVTIGAWMLAMNVNHENIHELCSPECTSTSIAVWDIPKCSGLCNPEKRMLELHQMDSCIQSPTMESDE*