AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215350 MtrunA17_Chr2g0316241 93.824 340 15 3 1 339 1 335 0.0 611
Msa0215350 MtrunA17_Chr8g0360581 77.419 341 74 2 1 339 2 341 0.0 545
Msa0215350 MtrunA17_Chr4g0004991 36.641 262 149 7 78 325 22 280 4.98e-52 174
Msa0215350 MtrunA17_Chr4g0024631 35.496 262 152 7 78 325 135 393 1.97e-49 170
Msa0215350 MtrunA17_Chr3g0115251 34.307 274 162 8 65 324 110 379 9.60e-48 165
Msa0215350 MtrunA17_Chr2g0322591 34.483 261 155 6 78 325 131 388 4.12e-45 159
Msa0215350 MtrunA17_Chr4g0017871 37.281 228 127 6 112 325 10 235 2.40e-41 144
Msa0215350 MtrunA17_Chr5g0396961 33.043 230 143 6 80 302 113 338 3.78e-39 141
Msa0215350 MtrunA17_Chr3g0126221 32.114 246 153 6 73 313 106 342 2.60e-36 134
Msa0215350 MtrunA17_Chr1g0149521 35.622 233 134 9 76 301 115 338 2.75e-34 128
Msa0215350 MtrunA17_Chr5g0417441 25.455 220 151 4 85 297 390 603 1.68e-12 68.6
Msa0215350 MtrunA17_Chr4g0068981 24.710 259 180 6 78 329 391 641 4.64e-12 67.0
Msa0215350 MtrunA17_Chr2g0285521 21.930 228 161 5 78 297 438 656 4.60e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215350 AT1G53290.1 70.930 344 88 3 6 339 3 344 6.14e-180 502
Msa0215350 AT3G14960.1 71.637 342 89 4 2 339 5 342 1.75e-179 500
Msa0215350 AT2G26100.1 61.755 319 119 1 24 339 50 368 9.14e-140 401
Msa0215350 AT2G26100.2 71.130 239 69 0 77 315 106 344 2.31e-127 369
Msa0215350 AT1G11730.1 35.985 264 152 7 76 325 110 370 2.43e-49 169
Msa0215350 AT1G77810.2 35.496 262 154 7 78 326 112 371 3.03e-49 169
Msa0215350 AT1G77810.1 35.496 262 154 7 78 326 115 374 3.76e-49 169
Msa0215350 AT1G32930.1 36.900 271 150 8 73 325 118 385 6.21e-49 169
Msa0215350 AT1G33430.1 36.667 270 152 8 79 334 122 386 1.09e-48 168
Msa0215350 AT1G05170.2 34.601 263 155 7 77 325 134 393 1.70e-48 168
Msa0215350 AT1G22015.1 38.129 278 146 9 65 326 115 382 4.01e-47 164
Msa0215350 AT1G33430.2 35.740 277 153 9 79 334 122 394 2.84e-46 162
Msa0215350 AT4G26940.1 35.249 261 153 6 78 325 136 393 3.78e-45 159
Msa0215350 AT2G32430.1 35.115 262 153 7 78 325 137 395 1.11e-44 158
Msa0215350 AT1G05170.1 36.036 222 135 4 77 293 134 353 1.17e-44 157
Msa0215350 AT4G32120.1 34.981 263 152 9 49 300 82 336 3.04e-39 142
Msa0215350 AT5G53340.1 32.489 237 146 6 82 313 111 338 1.00e-36 135
Msa0215350 AT5G53340.2 32.911 237 144 7 82 313 111 337 1.10e-36 135
Msa0215350 AT1G33430.3 40.884 181 101 3 80 255 123 302 3.10e-35 130
Msa0215350 AT2G25300.2 36.564 227 129 8 80 299 40 258 5.20e-35 129
Msa0215350 AT2G25300.1 36.564 227 129 8 80 299 118 336 2.67e-34 129
Msa0215350 AT4G26940.2 40.278 144 83 2 78 219 136 278 1.92e-24 101
Msa0215350 AT1G27120.1 25.728 206 141 4 81 283 425 621 6.89e-13 70.1
Msa0215350 AT1G27120.2 25.728 206 141 4 81 283 394 590 7.43e-13 69.7
Msa0215350 AT1G26810.2 25.909 220 150 4 85 297 396 609 1.28e-12 69.3
Msa0215350 AT1G26810.1 25.909 220 150 4 85 297 396 609 1.28e-12 69.3
Msa0215350 AT5G62620.1 24.638 207 144 4 80 283 431 628 3.66e-12 67.8
Msa0215350 AT3G06440.2 25.941 239 149 7 80 304 341 565 1.48e-11 65.9
Msa0215350 AT3G06440.1 25.941 239 149 7 80 304 370 594 1.64e-11 65.9

Find 103 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGATGTCTGCACTTAAA+AGG 0.205693 2_1:-60545160 Msa0215350:CDS
TTTCTCATCCTTTACATATA+AGG 0.218163 2_1:+60541579 None:intergenic
TTCAATGATCCTTTCCAAAA+AGG 0.240859 2_1:+60541510 None:intergenic
CTAGATCCGTTCGCGTTGTT+TGG 0.244084 2_1:-60546474 Msa0215350:CDS
CAAACAACGCGAACGGATCT+AGG 0.247402 2_1:+60546475 None:intergenic
CTGATGATGACATATATTTA+AGG 0.264025 2_1:-60544929 Msa0215350:CDS
CCTATCGGCAACAACATTTC+TGG 0.290197 2_1:+60546423 None:intergenic
GTACATAGGATGCATGAAAA+AGG 0.293304 2_1:-60544759 Msa0215350:CDS
TTTCCAAGCAAATTAGATAA+TGG 0.334739 2_1:+60544132 None:intergenic
CATCGACATCAATCGCTGTT+TGG 0.338964 2_1:-60543132 Msa0215350:CDS
TACACTAACCATTTGAGTTT+CGG 0.341334 2_1:+60544719 None:intergenic
TAGATCCGTTCGCGTTGTTT+GGG 0.344788 2_1:-60546473 Msa0215350:CDS
TATTCATCAGATTCCATTGT+TGG 0.349171 2_1:+60541778 None:intergenic
TGGGATATTCCAAAGTGTTC+AGG 0.349634 2_1:-60543112 Msa0215350:intron
TCATGCATCCTATGTACGTC+TGG 0.353445 2_1:+60544765 None:intergenic
ATATGACGATTTCATTCAAT+TGG 0.361639 2_1:-60545126 Msa0215350:CDS
TTTATCCTTATATTTAGTTC+AGG 0.364320 2_1:-60541746 Msa0215350:three_prime_UTR
ACCGGAACTTGATGAAGTTC+CGG 0.364429 2_1:+60546677 None:intergenic
ATCAGCTTTGACATAAAATT+CGG 0.372389 2_1:+60544947 None:intergenic
TGGTTTCCTTCCGATCCTAA+TGG 0.377181 2_1:-60546325 Msa0215350:CDS
ATCGACATCAATCGCTGTTT+GGG 0.381526 2_1:-60543131 Msa0215350:CDS
TGCCGATAGGCATAAGGTTA+TGG 0.390206 2_1:-60546410 Msa0215350:CDS
GAGTTCCTGAACTAAATATA+AGG 0.393799 2_1:+60541741 None:intergenic
GCATTTGTCGGTATTCAGAC+TGG 0.399480 2_1:-60546388 Msa0215350:CDS
TGTCAAGCTTGGTCGCTCTT+AGG 0.399911 2_1:-60544056 Msa0215350:CDS
GAATGCAGCTGTCCATTTGA+TGG 0.400266 2_1:+60541806 None:intergenic
TAGTACCGTTGAAGTCCATT+AGG 0.400530 2_1:+60546310 None:intergenic
TTCTATTCTCACATCACAAC+CGG 0.401618 2_1:-60546696 Msa0215350:five_prime_UTR
ATGAGAAAATATATATACTA+AGG 0.403664 2_1:-60541564 Msa0215350:three_prime_UTR
AGTTTCGGATCAGTGAAAAC+AGG 0.412422 2_1:+60544734 None:intergenic
ATTGATGTCGATGTACATTC+TGG 0.423236 2_1:+60543142 None:intergenic
AGCAATGAGGATGTTACAAT+TGG 0.423646 2_1:-60543220 Msa0215350:CDS
TTGGAAGGCGTGAATCTTTG+AGG 0.424287 2_1:-60546354 Msa0215350:CDS
TGCTGATGTTGTGTCAAGCT+TGG 0.426295 2_1:-60544067 Msa0215350:CDS
TGGTCGCTCTTAGGAATAAC+AGG 0.428844 2_1:-60544047 Msa0215350:intron
GAGCCATTATCTAATTTGCT+TGG 0.431342 2_1:-60544135 Msa0215350:CDS
GTGATGTGAGAATAGAATAA+TGG 0.446046 2_1:+60546702 None:intergenic
GTTCGCGTTGTTTGGGATCA+CGG 0.448653 2_1:-60546466 Msa0215350:CDS
ACCGGAACTTCATCAAGTTC+CGG 0.450097 2_1:-60546678 Msa0215350:five_prime_UTR
CATAAGGTTATGGCATTTGT+CGG 0.466732 2_1:-60546400 Msa0215350:CDS
TGTTGTTGCCGATAGGCATA+AGG 0.472626 2_1:-60546416 Msa0215350:CDS
TCAGCAGAAAGAGCATATAT+AGG 0.474635 2_1:+60544084 None:intergenic
AATGTTGGAACTCCATCAAA+TGG 0.475957 2_1:-60541818 Msa0215350:CDS
TCCAGCTTGGAAGAAGCTAC+TGG 0.476169 2_1:-60545224 Msa0215350:intron
TCCCTTTACCTTCTTCAGGC+CGG 0.476767 2_1:-60541602 Msa0215350:three_prime_UTR
CGATGAGGAGTAAAAGGAGG+AGG 0.476875 2_1:+60546542 None:intergenic
AAATACAAACCTGAACACTT+TGG 0.478218 2_1:+60543103 None:intergenic
GAAAATGAAGAAGGCATTGT+GGG 0.478423 2_1:+60546640 None:intergenic
ATTTCTGGCGCCGTTGGTGA+CGG 0.479564 2_1:+60546438 None:intergenic
TCACTGATCCGAAACTCAAA+TGG 0.480790 2_1:-60544727 Msa0215350:intron
ATTATCTAATTTGCTTGGAA+AGG 0.483371 2_1:-60544130 Msa0215350:CDS
GGAGGAGGAAGGTGATGAGG+AGG 0.489252 2_1:+60546557 None:intergenic
CAGACTGGGTTTAGATCTGT+TGG 0.492313 2_1:-60546373 Msa0215350:CDS
GAAGATGTCTGCACTTAAAA+GGG 0.496040 2_1:-60545159 Msa0215350:CDS
TGAGAATCTGCGAAGGGGAA+TGG 0.496211 2_1:+60546588 None:intergenic
GTGTGACGTGGGTTGAAGAA+TGG 0.496529 2_1:+60546610 None:intergenic
ACGTGGGTTGAAGAATGGTT+TGG 0.507473 2_1:+60546615 None:intergenic
AACAACATTTCTGGCGCCGT+TGG 0.510437 2_1:+60546432 None:intergenic
GCCGGCCTGAAGAAGGTAAA+GGG 0.513753 2_1:+60541601 None:intergenic
GAGGAGTAAAAGGAGGAGGA+AGG 0.516677 2_1:+60546546 None:intergenic
CATTTGTCGGTATTCAGACT+GGG 0.517713 2_1:-60546387 Msa0215350:CDS
AAAGGAGGAGGAAGGTGATG+AGG 0.518968 2_1:+60546554 None:intergenic
AAACAACGCGAACGGATCTA+GGG 0.523178 2_1:+60546476 None:intergenic
TGGGTTGAAGAATGGTTTGG+AGG 0.524516 2_1:+60546618 None:intergenic
AGTGTAACTGTTGAGGAGAA+AGG 0.526072 2_1:+60546780 None:intergenic
GTGAATCTTTGAGGAAGACT+TGG 0.526407 2_1:-60546345 Msa0215350:CDS
CTTGGAAGAAGCTACTGGAT+TGG 0.527346 2_1:-60545219 Msa0215350:CDS
CGAAGGGGAATGGTGTGACG+TGG 0.533817 2_1:+60546598 None:intergenic
TCTCATTCCCAGACGTACAT+AGG 0.534214 2_1:-60544773 Msa0215350:CDS
CACGGCAACGCCGTCACCAA+CGG 0.537116 2_1:-60546448 Msa0215350:CDS
CATGCATCCTATGTACGTCT+GGG 0.539002 2_1:+60544766 None:intergenic
AAAGTTCATGAATATTCTCA+TGG 0.542243 2_1:+60543170 None:intergenic
TGCCATAACCTTATGCCTAT+CGG 0.542296 2_1:+60546408 None:intergenic
GAGGAGAAAGGTGGTGACGG+AGG 0.542667 2_1:+60546792 None:intergenic
GATGACATATATTTAAGGCC+AGG 0.545400 2_1:-60544924 Msa0215350:intron
ATATAAGGCCGGCCTGAAGA+AGG 0.550875 2_1:+60541594 None:intergenic
CATTCAATTGGATATTGAAG+AGG 0.553721 2_1:-60545114 Msa0215350:CDS
TCATCCTTTACATATAAGGC+CGG 0.554286 2_1:+60541583 None:intergenic
TAATCCAGAAAAGAGAATGT+TGG 0.561149 2_1:-60541833 Msa0215350:CDS
GGCCGGCCTGAAGAAGGTAA+AGG 0.567415 2_1:+60541600 None:intergenic
CAGGCCGGCCTTATATGTAA+AGG 0.570103 2_1:-60541587 Msa0215350:three_prime_UTR
GGAAAATGAAGAAGGCATTG+TGG 0.573706 2_1:+60546639 None:intergenic
AGGATGTTACAATTGGAGCT+TGG 0.574710 2_1:-60543213 Msa0215350:CDS
TGAGAAAATATATATACTAA+GGG 0.581214 2_1:-60541563 Msa0215350:three_prime_UTR
AAACGATGAGGAGTAAAAGG+AGG 0.582478 2_1:+60546539 None:intergenic
GAGAGACAGTGTAACTGTTG+AGG 0.588739 2_1:+60546773 None:intergenic
TGAAGAATGAGAATCTGCGA+AGG 0.595531 2_1:+60546581 None:intergenic
CCAGAAATGTTGTTGCCGAT+AGG 0.597294 2_1:-60546423 Msa0215350:CDS
TGAAGTCCATTAGGATCGGA+AGG 0.604237 2_1:+60546319 None:intergenic
GGTTTGGAGGAAAATGAAGA+AGG 0.606976 2_1:+60546631 None:intergenic
CTGGGTTTAGATCTGTTGGA+AGG 0.609512 2_1:-60546369 Msa0215350:CDS
CCGTTGAAGTCCATTAGGAT+CGG 0.614621 2_1:+60546315 None:intergenic
GAAGAATGAGAATCTGCGAA+GGG 0.627764 2_1:+60546582 None:intergenic
CCGATCCTAATGGACTTCAA+CGG 0.632210 2_1:-60546315 Msa0215350:intron
CTGCATTCAGAGTCCAACAA+TGG 0.632354 2_1:-60541791 Msa0215350:CDS
GTTGAGGAGAAAGGTGGTGA+CGG 0.638927 2_1:+60546789 None:intergenic
GTGATCCCAAACAACGCGAA+CGG 0.639513 2_1:+60546468 None:intergenic
GTTTCGGATCAGTGAAAACA+GGG 0.647891 2_1:+60544735 None:intergenic
AAAATGAAGAAGGCATTGTG+GGG 0.666104 2_1:+60546641 None:intergenic
GAAGGGGAATGGTGTGACGT+GGG 0.674684 2_1:+60546599 None:intergenic
AAGAATGAGAATCTGCGAAG+GGG 0.692002 2_1:+60546583 None:intergenic
TAAAGATTAATGTATACACA+AGG 0.700571 2_1:+60541719 None:intergenic
GTAACTGTTGAGGAGAAAGG+TGG 0.751772 2_1:+60546783 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAACATTAAATTGTTT+TGG - chr2_1:60542516-60542535 Msa0215350:intron 10.0%
!!! AATTTATGAATCTTTAATTT+GGG - chr2_1:60543839-60543858 Msa0215350:intron 10.0%
!!! TTTTTTATTTGCTAATATTA+TGG + chr2_1:60544971-60544990 None:intergenic 10.0%
!!! TATATATTTTTAACATTTTG+TGG + chr2_1:60545264-60545283 None:intergenic 10.0%
!! TGTTAAAAATATATATATAG+AGG - chr2_1:60545269-60545288 Msa0215350:intron 10.0%
!! GAATTTATGAATCTTTAATT+TGG - chr2_1:60543838-60543857 Msa0215350:intron 15.0%
!! ATGTAATTTCCAATATTTAT+GGG - chr2_1:60544023-60544042 Msa0215350:intron 15.0%
!! TATAAAGAATTAATGAACTA+GGG + chr2_1:60544709-60544728 None:intergenic 15.0%
!!! ACTGTGTTTTAAAAAATAAA+AGG + chr2_1:60545084-60545103 None:intergenic 15.0%
!!! ATTTTTTAAAACACAGTTTT+CGG - chr2_1:60545087-60545106 Msa0215350:intron 15.0%
!! AAAAATATATATATAGAGGA+TGG - chr2_1:60545273-60545292 Msa0215350:intron 15.0%
!! TTAGATTAAAACAAAATAGA+TGG + chr2_1:60545346-60545365 None:intergenic 15.0%
!!! TCTATTTTGTTTTAATCTAA+CGG - chr2_1:60545346-60545365 Msa0215350:intron 15.0%
!! AAAATTACAGAAAAAAACTA+AGG + chr2_1:60546694-60546713 None:intergenic 15.0%
!! ATGAGAAAATATATATACTA+AGG - chr2_1:60546772-60546791 Msa0215350:five_prime_UTR 15.0%
!! TGAGAAAATATATATACTAA+GGG - chr2_1:60546773-60546792 Msa0215350:five_prime_UTR 15.0%
!!! TTGTTTTTATTGTAGTATTG+AGG - chr2_1:60542396-60542415 Msa0215350:intron 20.0%
!!! GTTTTACTTATCATTTTACT+TGG - chr2_1:60542964-60542983 Msa0215350:intron 20.0%
!!! ATTTAATGTACTTTTGTTAC+CGG - chr2_1:60543026-60543045 Msa0215350:intron 20.0%
!! AATAGGAATAAATCAATATG+AGG + chr2_1:60543089-60543108 None:intergenic 20.0%
!! AAAATATGGTCATTTATTAC+AGG - chr2_1:60543329-60543348 Msa0215350:intron 20.0%
!! GTAATAACAACATTAAAACT+AGG + chr2_1:60543460-60543479 None:intergenic 20.0%
!! TATGATAGGCATAAAATATT+TGG - chr2_1:60543706-60543725 Msa0215350:intron 20.0%
!! CATGTAATTTCCAATATTTA+TGG - chr2_1:60544022-60544041 Msa0215350:intron 20.0%
!! TGTAATTTCCAATATTTATG+GGG - chr2_1:60544024-60544043 Msa0215350:intron 20.0%
!! AAAAAGAAACTGAGAATTAA+CGG - chr2_1:60544545-60544564 Msa0215350:intron 20.0%
!! CTATAAAGAATTAATGAACT+AGG + chr2_1:60544710-60544729 None:intergenic 20.0%
!! AAGTATGATATTGTATGAAT+TGG + chr2_1:60544859-60544878 None:intergenic 20.0%
!! AACTTCATAACTATTCTTTA+AGG + chr2_1:60544886-60544905 None:intergenic 20.0%
!! AACTTTACATTCACAATTAT+AGG + chr2_1:60545056-60545075 None:intergenic 20.0%
!! AATAATTGAAAGAGTTACAT+AGG + chr2_1:60545621-60545640 None:intergenic 20.0%
!! TAACTCTTTCAATTATTTAC+TGG - chr2_1:60545624-60545643 Msa0215350:intron 20.0%
!!! AATCAGCATTTAATGATTTT+TGG - chr2_1:60546388-60546407 Msa0215350:CDS 20.0%
!!! TTTATCCTTATATTTAGTTC+AGG - chr2_1:60546590-60546609 Msa0215350:CDS 20.0%
!! TAAAGATTAATGTATACACA+AGG + chr2_1:60546620-60546639 None:intergenic 20.0%
!!! TTTCTGTAATTTTTCTTTTG+TGG - chr2_1:60546701-60546720 Msa0215350:five_prime_UTR 20.0%
!!! TACTAATCTCTTTTTTGTTG+AGG - chr2_1:60542044-60542063 Msa0215350:intron 25.0%
! ACATGTATAAGGAAGATTTA+TGG - chr2_1:60542148-60542167 Msa0215350:intron 25.0%
! GATTTATGGATTCTGTAATA+AGG - chr2_1:60542162-60542181 Msa0215350:intron 25.0%
!!! TTTCTCTGATAGTTTTTTCT+TGG + chr2_1:60542223-60542242 None:intergenic 25.0%
! AAACTATCAGAGAAACTATT+AGG - chr2_1:60542228-60542247 Msa0215350:intron 25.0%
! AGAAACTATTAGGAAAGATT+TGG - chr2_1:60542238-60542257 Msa0215350:intron 25.0%
! AGATTTGGAAATTAATGAGT+TGG - chr2_1:60542253-60542272 Msa0215350:intron 25.0%
! TTCTATCATACACCATATTT+CGG + chr2_1:60542280-60542299 None:intergenic 25.0%
!!! AATGTCGATGTTTTGATTTT+AGG - chr2_1:60542359-60542378 Msa0215350:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG - chr2_1:60542670-60542689 Msa0215350:intron 25.0%
! CAAATAAGTCAATCCAAATA+GGG - chr2_1:60542671-60542690 Msa0215350:intron 25.0%
! ATGTGATATTGTTTAATGAC+AGG - chr2_1:60542918-60542937 Msa0215350:intron 25.0%
!! TAAATGCAAATCGTTTTCAA+TGG - chr2_1:60542942-60542961 Msa0215350:intron 25.0%
! ATATGACGATTTCATTCAAT+TGG - chr2_1:60543210-60543229 Msa0215350:CDS 25.0%
!! GTGTTTCTAAGCTAAAAATA+TGG - chr2_1:60543315-60543334 Msa0215350:intron 25.0%
!! ATCAGCTTTGACATAAAATT+CGG + chr2_1:60543392-60543411 None:intergenic 25.0%
!! CTGATGATGACATATATTTA+AGG - chr2_1:60543407-60543426 Msa0215350:intron 25.0%
! TTGCAAAAATCCTGATTATT+TGG + chr2_1:60543498-60543517 None:intergenic 25.0%
!! ATTTAGAACCCCATAAATAT+TGG + chr2_1:60544035-60544054 None:intergenic 25.0%
! TTTCCAAGCAAATTAGATAA+TGG + chr2_1:60544207-60544226 None:intergenic 25.0%
!!! ATTATCTAATTTGCTTGGAA+AGG - chr2_1:60544206-60544225 Msa0215350:intron 25.0%
! ATATATGTAGCATGCAAATA+AGG + chr2_1:60544378-60544397 None:intergenic 25.0%
! ACAATTATAGGAATATGGAA+GGG + chr2_1:60545044-60545063 None:intergenic 25.0%
! CATTCACAATTATAGGAATA+TGG + chr2_1:60545049-60545068 None:intergenic 25.0%
! AAAGTTCATGAATATTCTCA+TGG + chr2_1:60545169-60545188 None:intergenic 25.0%
! TTAAAAAAGAAGCTTAGAGT+TGG + chr2_1:60545566-60545585 None:intergenic 25.0%
! AAAGAACTGGATAATTACAT+AGG + chr2_1:60545682-60545701 None:intergenic 25.0%
!!! AACTTCTTATTTTGCTATCT+TGG - chr2_1:60545744-60545763 Msa0215350:intron 25.0%
!!! GTATTTTGAGATAAAAGCAA+CGG - chr2_1:60545887-60545906 Msa0215350:intron 25.0%
! AGGTGAATATTATCAATTTC+TGG + chr2_1:60546166-60546185 None:intergenic 25.0%
!! TTTCAACTTAACATTTGTTG+AGG - chr2_1:60546239-60546258 Msa0215350:intron 25.0%
! GGAGAATTACATAAGAAAAT+CGG + chr2_1:60546287-60546306 None:intergenic 25.0%
!!! CTTTTTTCTGAATGATGATT+TGG - chr2_1:60546456-60546475 Msa0215350:CDS 25.0%
! TTTCTCATCCTTTACATATA+AGG + chr2_1:60546760-60546779 None:intergenic 25.0%
!!! ACTATACCTTTTTTCCTTTT+TGG - chr2_1:60546812-60546831 Msa0215350:five_prime_UTR 25.0%
GTGATGTGAGAATAGAATAA+TGG + chr2_1:60541637-60541656 None:intergenic 30.0%
ATAAGGAGAGATAGATCAAA+TGG - chr2_1:60542179-60542198 Msa0215350:intron 30.0%
TGGTGTATGATAGAACATTA+TGG - chr2_1:60542285-60542304 Msa0215350:intron 30.0%
! TTGATTTGAAGTCTCATGTT+TGG - chr2_1:60542420-60542439 Msa0215350:intron 30.0%
TGTAATACACAACACAACTT+AGG + chr2_1:60542697-60542716 None:intergenic 30.0%
GTGTTGTGTATTACAAGAAT+TGG - chr2_1:60542702-60542721 Msa0215350:intron 30.0%
TACTTTGCATAGGTAATGAA+TGG + chr2_1:60542760-60542779 None:intergenic 30.0%
AATCAAAACCGACTAACATA+AGG + chr2_1:60542820-60542839 None:intergenic 30.0%
!!! TAGTCGGTTTTGATTGATTT+TGG - chr2_1:60542825-60542844 Msa0215350:intron 30.0%
!!! AGTCGGTTTTGATTGATTTT+GGG - chr2_1:60542826-60542845 Msa0215350:intron 30.0%
!!! TTGGCTTTTAGGTTTGTTAT+TGG - chr2_1:60543136-60543155 Msa0215350:CDS 30.0%
CATTCAATTGGATATTGAAG+AGG - chr2_1:60543222-60543241 Msa0215350:CDS 30.0%
TATGGTCATTTATTACAGGT+TGG - chr2_1:60543333-60543352 Msa0215350:intron 30.0%
TACATAGGATGCATGAAAAA+GGG - chr2_1:60543578-60543597 Msa0215350:intron 30.0%
! TACACTAACCATTTGAGTTT+CGG + chr2_1:60543620-60543639 None:intergenic 30.0%
TGCCTATCATAAAGTGAAAT+GGG + chr2_1:60543697-60543716 None:intergenic 30.0%
ATGCCTATCATAAAGTGAAA+TGG + chr2_1:60543698-60543717 None:intergenic 30.0%
! AATGATTTTCATTCCCTTTG+AGG + chr2_1:60543907-60543926 None:intergenic 30.0%
GAAAACGAAAGAAACAAGAT+GGG + chr2_1:60543948-60543967 None:intergenic 30.0%
AGAAAACGAAAGAAACAAGA+TGG + chr2_1:60543949-60543968 None:intergenic 30.0%
AAACGTCTCAACATAAACTA+GGG - chr2_1:60543992-60544011 Msa0215350:intron 30.0%
!!! ATTGTTATCTGCCTCTTTTT+TGG - chr2_1:60544053-60544072 Msa0215350:CDS 30.0%
!!! TTGTTATCTGCCTCTTTTTT+GGG - chr2_1:60544054-60544073 Msa0215350:CDS 30.0%
! TCATTTTACAACCAGCATAT+TGG - chr2_1:60544132-60544151 Msa0215350:CDS 30.0%
!!! GGCTTTTGGAGTAATTTTAT+CGG - chr2_1:60544162-60544181 Msa0215350:intron 30.0%
! GAGTATTTTCTTCATGCTTA+TGG - chr2_1:60544228-60544247 Msa0215350:intron 30.0%
CAAGTTGTAGACAAAGAAAA+GGG + chr2_1:60544317-60544336 None:intergenic 30.0%
! TTTTTCCACTATCTCACTTT+TGG - chr2_1:60544399-60544418 Msa0215350:intron 30.0%
AAAATCCAAAAGTGAGATAG+TGG + chr2_1:60544407-60544426 None:intergenic 30.0%
ATCTTTGTCAGAATTGTGTT+TGG - chr2_1:60544470-60544489 Msa0215350:intron 30.0%
ACTATATAAACCAAAGCAGA+TGG + chr2_1:60544512-60544531 None:intergenic 30.0%
TAAATCTCCAAGCAATTGAA+TGG + chr2_1:60544801-60544820 None:intergenic 30.0%
!!! TTGTTTTTGCCTTTTCACAA+AGG - chr2_1:60544930-60544949 Msa0215350:CDS 30.0%
ATCTTTGTTCCTTTGTGAAA+AGG + chr2_1:60544942-60544961 None:intergenic 30.0%
CACAATTATAGGAATATGGA+AGG + chr2_1:60545045-60545064 None:intergenic 30.0%
AAATACAAACCTGAACACTT+TGG + chr2_1:60545236-60545255 None:intergenic 30.0%
TAAGTCTATAGACTTACTCT+TGG + chr2_1:60545310-60545329 None:intergenic 30.0%
TAGATCGTAAAAAACTGCTT+TGG + chr2_1:60545467-60545486 None:intergenic 30.0%
AAAGAGTTACATAGGCAAAT+CGG + chr2_1:60545613-60545632 None:intergenic 30.0%
! GTTTTTGAATTTCTACCTTG+AGG - chr2_1:60545804-60545823 Msa0215350:intron 30.0%
ATAAATCAAGAAACCTTGTG+TGG + chr2_1:60545848-60545867 None:intergenic 30.0%
CTTGAAGATTGGATTCATTA+AGG - chr2_1:60545952-60545971 Msa0215350:intron 30.0%
AAGATTGGATTCATTAAGGT+AGG - chr2_1:60545956-60545975 Msa0215350:intron 30.0%
TAGGAAAACAAAAACATACG+TGG - chr2_1:60545975-60545994 Msa0215350:intron 30.0%
! ATTTTCTTTTTGACGAATCG+CGG + chr2_1:60546129-60546148 None:intergenic 30.0%
ATTCTCCAATTCTATTGCAT+TGG - chr2_1:60546300-60546319 Msa0215350:intron 30.0%
TGAATAACATAAGAGAGAGA+TGG + chr2_1:60546344-60546363 None:intergenic 30.0%
! TTTCTGAATGATGATTTGGA+TGG - chr2_1:60546460-60546479 Msa0215350:CDS 30.0%
TAATCCAGAAAAGAGAATGT+TGG - chr2_1:60546503-60546522 Msa0215350:CDS 30.0%
TATTCATCAGATTCCATTGT+TGG + chr2_1:60546561-60546580 None:intergenic 30.0%
GAGTTCCTGAACTAAATATA+AGG + chr2_1:60546598-60546617 None:intergenic 30.0%
!!! ACCTTTTTTCCTTTTTGGAA+AGG - chr2_1:60546817-60546836 Msa0215350:five_prime_UTR 30.0%
TCCTTTCCAAAAAGGAAAAA+AGG + chr2_1:60546821-60546840 None:intergenic 30.0%
TTCTATTCTCACATCACAAC+CGG - chr2_1:60541640-60541659 Msa0215350:three_prime_UTR 35.0%
!! AAAATGAAGAAGGCATTGTG+GGG + chr2_1:60541698-60541717 None:intergenic 35.0%
!! GAAAATGAAGAAGGCATTGT+GGG + chr2_1:60541699-60541718 None:intergenic 35.0%
GAAAAACGATGAGGAGTAAA+AGG + chr2_1:60541803-60541822 None:intergenic 35.0%
ACGGTTTAAGAAAAACGATG+AGG + chr2_1:60541812-60541831 None:intergenic 35.0%
!!! AGACAGCGATTGTTTTGAAA+CGG + chr2_1:60541831-60541850 None:intergenic 35.0%
CATAAGGTTATGGCATTTGT+CGG - chr2_1:60541936-60541955 Msa0215350:intron 35.0%
ATCAATGCGAAAACAAGCTT+AGG - chr2_1:60542117-60542136 Msa0215350:intron 35.0%
GAAAACAAGCTTAGGTGATT+TGG - chr2_1:60542125-60542144 Msa0215350:intron 35.0%
! AGGTGATTTGGACATGTATA+AGG - chr2_1:60542137-60542156 Msa0215350:intron 35.0%
AGATAGATCAAATGGAGGAT+AGG - chr2_1:60542187-60542206 Msa0215350:intron 35.0%
! TAATGAGTTGGACCGAAATA+TGG - chr2_1:60542265-60542284 Msa0215350:intron 35.0%
CCAAAAACAAGACCACAAAA+GGG + chr2_1:60542734-60542753 None:intergenic 35.0%
TCCAAAAACAAGACCACAAA+AGG + chr2_1:60542735-60542754 None:intergenic 35.0%
GCATTATGCCTTATGTTAGT+CGG - chr2_1:60542809-60542828 Msa0215350:intron 35.0%
! TTTTGTTACCGGTGCAATTT+GGG - chr2_1:60543037-60543056 Msa0215350:intron 35.0%
GAAGATGTCTGCACTTAAAA+GGG - chr2_1:60543177-60543196 Msa0215350:CDS 35.0%
! TCAGAACACACGTTTTGTAT+GGG + chr2_1:60543261-60543280 None:intergenic 35.0%
! GATGACATATATTTAAGGCC+AGG - chr2_1:60543412-60543431 Msa0215350:intron 35.0%
CTTGAAAGAGCCAAATAATC+AGG - chr2_1:60543485-60543504 Msa0215350:intron 35.0%
GTACATAGGATGCATGAAAA+AGG - chr2_1:60543577-60543596 Msa0215350:intron 35.0%
ATCTTTAATTGTGTCCTTCC+TGG - chr2_1:60543643-60543662 Msa0215350:intron 35.0%
GGGTGAAAATTGAAAAGTTC+CGG + chr2_1:60543677-60543696 None:intergenic 35.0%
CACCCATTTCACTTTATGAT+AGG - chr2_1:60543692-60543711 Msa0215350:intron 35.0%
TAGATTACAACTACTGTCTG+TGG - chr2_1:60543816-60543835 Msa0215350:intron 35.0%
CTAGTTTATGTTGAGACGTT+TGG + chr2_1:60543993-60544012 None:intergenic 35.0%
CAAACGTCTCAACATAAACT+AGG - chr2_1:60543991-60544010 Msa0215350:intron 35.0%
AACGTCTCAACATAAACTAG+GGG - chr2_1:60543993-60544012 Msa0215350:intron 35.0%
!!! TGTTATCTGCCTCTTTTTTG+GGG - chr2_1:60544055-60544074 Msa0215350:CDS 35.0%
! TTTTCATTGTCGCTATAGAG+AGG + chr2_1:60544101-60544120 None:intergenic 35.0%
!!! ATATTGGCTTCTTTGGCTTT+TGG - chr2_1:60544148-60544167 Msa0215350:intron 35.0%
!! GAGCCATTATCTAATTTGCT+TGG - chr2_1:60544201-60544220 Msa0215350:intron 35.0%
! TCAGCAGAAAGAGCATATAT+AGG + chr2_1:60544255-60544274 None:intergenic 35.0%
GCAAGTTGTAGACAAAGAAA+AGG + chr2_1:60544318-60544337 None:intergenic 35.0%
ACACAATTCTGACAAAGATG+TGG + chr2_1:60544469-60544488 None:intergenic 35.0%
TTGTCAGAATTGTGTTTGGT+TGG - chr2_1:60544474-60544493 Msa0215350:intron 35.0%
AAATGAGCCATTCAATTGCT+TGG - chr2_1:60544791-60544810 Msa0215350:CDS 35.0%
TCAATTGCTTGGAGATTTAG+TGG - chr2_1:60544802-60544821 Msa0215350:CDS 35.0%
AAAGAAATATGCTCAGTGCA+TGG + chr2_1:60544828-60544847 None:intergenic 35.0%
TTATAGGAATATGGAAGGGA+GGG + chr2_1:60545040-60545059 None:intergenic 35.0%
ATTATAGGAATATGGAAGGG+AGG + chr2_1:60545041-60545060 None:intergenic 35.0%
AGCAATGAGGATGTTACAAT+TGG - chr2_1:60545116-60545135 Msa0215350:CDS 35.0%
ATTGATGTCGATGTACATTC+TGG + chr2_1:60545197-60545216 None:intergenic 35.0%
! AAGAGGTGTGGAATATTGTT+TGG + chr2_1:60545397-60545416 None:intergenic 35.0%
AAAAAGAAGCTTAGAGTTGG+AGG + chr2_1:60545563-60545582 None:intergenic 35.0%
GAACTGGATAATTACATAGG+CGG + chr2_1:60545679-60545698 None:intergenic 35.0%
GTTGTTCAATGCAAAAGAAC+TGG + chr2_1:60545695-60545714 None:intergenic 35.0%
TCTTGATTTATGTGTGACAG+AGG - chr2_1:60545857-60545876 Msa0215350:intron 35.0%
CTTGATTTATGTGTGACAGA+GGG - chr2_1:60545858-60545877 Msa0215350:intron 35.0%
TTGATTTATGTGTGACAGAG+GGG - chr2_1:60545859-60545878 Msa0215350:intron 35.0%
! AGTTCCAACATTCTCTTTTC+TGG + chr2_1:60546510-60546529 None:intergenic 35.0%
AATGTTGGAACTCCATCAAA+TGG - chr2_1:60546518-60546537 Msa0215350:CDS 35.0%
! TTTTTCCCTTTACCTTCTTC+AGG - chr2_1:60546730-60546749 Msa0215350:five_prime_UTR 35.0%
TCATCCTTTACATATAAGGC+CGG + chr2_1:60546756-60546775 None:intergenic 35.0%
AGTGTAACTGTTGAGGAGAA+AGG + chr2_1:60541559-60541578 None:intergenic 40.0%
!!! TGGGGTTTTAGAGTTTAGAC+CGG + chr2_1:60541680-60541699 None:intergenic 40.0%
!! GGAAAATGAAGAAGGCATTG+TGG + chr2_1:60541700-60541719 None:intergenic 40.0%
GGTTTGGAGGAAAATGAAGA+AGG + chr2_1:60541708-60541727 None:intergenic 40.0%
AAGAATGAGAATCTGCGAAG+GGG + chr2_1:60541756-60541775 None:intergenic 40.0%
GAAGAATGAGAATCTGCGAA+GGG + chr2_1:60541757-60541776 None:intergenic 40.0%
TGAAGAATGAGAATCTGCGA+AGG + chr2_1:60541758-60541777 None:intergenic 40.0%
AAACGATGAGGAGTAAAAGG+AGG + chr2_1:60541800-60541819 None:intergenic 40.0%
TGCCATAACCTTATGCCTAT+CGG + chr2_1:60541931-60541950 None:intergenic 40.0%
CATTTGTCGGTATTCAGACT+GGG - chr2_1:60541949-60541968 Msa0215350:intron 40.0%
! GTGAATCTTTGAGGAAGACT+TGG - chr2_1:60541991-60542010 Msa0215350:intron 40.0%
TAGTACCGTTGAAGTCCATT+AGG + chr2_1:60542029-60542048 None:intergenic 40.0%
AGGAGAGATAGATCAAATGG+AGG - chr2_1:60542182-60542201 Msa0215350:intron 40.0%
! AAACCTTTTCCCCACTAAGT+GGG + chr2_1:60542335-60542354 None:intergenic 40.0%
! AAAACCTTTTCCCCACTAAG+TGG + chr2_1:60542336-60542355 None:intergenic 40.0%
AACACAACTTAGGCCCTATT+TGG + chr2_1:60542687-60542706 None:intergenic 40.0%
! AATTGGAAGCTTCCCTTTTG+TGG - chr2_1:60542719-60542738 Msa0215350:intron 40.0%
!!! CCCTTTTGTGGTCTTGTTTT+TGG - chr2_1:60542731-60542750 Msa0215350:intron 40.0%
ATCCGTCTGAATCTAGCTAT+TGG - chr2_1:60542988-60543007 Msa0215350:intron 40.0%
GTCCAATAGCTAGATTCAGA+CGG + chr2_1:60542993-60543012 None:intergenic 40.0%
! CTTTTGTTACCGGTGCAATT+TGG - chr2_1:60543036-60543055 Msa0215350:intron 40.0%
TTTGTTACCGGTGCAATTTG+GGG - chr2_1:60543038-60543057 Msa0215350:intron 40.0%
TATTCCTATTGCTTCCAGCT+TGG - chr2_1:60543099-60543118 Msa0215350:intron 40.0%
!!! AAGCTACTGGATTGGCTTTT+AGG - chr2_1:60543125-60543144 Msa0215350:CDS 40.0%
CGAAGATGTCTGCACTTAAA+AGG - chr2_1:60543176-60543195 Msa0215350:CDS 40.0%
! CTCAGAACACACGTTTTGTA+TGG + chr2_1:60543262-60543281 None:intergenic 40.0%
GTTTCGGATCAGTGAAAACA+GGG + chr2_1:60543604-60543623 None:intergenic 40.0%
AGTTTCGGATCAGTGAAAAC+AGG + chr2_1:60543605-60543624 None:intergenic 40.0%
TCACTGATCCGAAACTCAAA+TGG - chr2_1:60543609-60543628 Msa0215350:intron 40.0%
AAAGTTCCGGAAATTAAGCC+AGG + chr2_1:60543664-60543683 None:intergenic 40.0%
TTAAACTGTAGCAGCCTCAA+AGG - chr2_1:60543890-60543909 Msa0215350:intron 40.0%
TAAACTGTAGCAGCCTCAAA+GGG - chr2_1:60543891-60543910 Msa0215350:intron 40.0%
TTGAGACGTTTGGAGGAAAA+GGG + chr2_1:60543983-60544002 None:intergenic 40.0%
GTTTATGTTGAGACGTTTGG+AGG + chr2_1:60543990-60544009 None:intergenic 40.0%
ACTACATGACCCCAAAAAAG+AGG + chr2_1:60544067-60544086 None:intergenic 40.0%
!! AACCAGCATATTGGCTTCTT+TGG - chr2_1:60544141-60544160 Msa0215350:CDS 40.0%
! ATTTTATCGGCAACTCTTGC+AGG - chr2_1:60544175-60544194 Msa0215350:intron 40.0%
TGACAAAGATGTGGAACAGA+CGG + chr2_1:60544460-60544479 None:intergenic 40.0%
GTTGTACACTATGAAACCCA+AGG + chr2_1:60544591-60544610 None:intergenic 40.0%
ATCAATGTATTGCAGTCCTG+AGG - chr2_1:60544629-60544648 Msa0215350:intron 40.0%
CAAAATTGACCATGAACCTC+AGG + chr2_1:60544648-60544667 None:intergenic 40.0%
TATAGGAATATGGAAGGGAG+GGG + chr2_1:60545039-60545058 None:intergenic 40.0%
! TTTTCGGATGTTCAGCAATG+AGG - chr2_1:60545103-60545122 Msa0215350:CDS 40.0%
AGGATGTTACAATTGGAGCT+TGG - chr2_1:60545123-60545142 Msa0215350:CDS 40.0%
ATCGACATCAATCGCTGTTT+GGG - chr2_1:60545205-60545224 Msa0215350:CDS 40.0%
! TGGGATATTCCAAAGTGTTC+AGG - chr2_1:60545224-60545243 Msa0215350:intron 40.0%
AATCAATGGTTGAAGAGGTG+TGG + chr2_1:60545409-60545428 None:intergenic 40.0%
GGAACAATCAATGGTTGAAG+AGG + chr2_1:60545414-60545433 None:intergenic 40.0%
GAACAATTGAAAGACGCTGA+AGG + chr2_1:60545435-60545454 None:intergenic 40.0%
!!! CGCTGAATTTTTTGGTCTGA+AGG + chr2_1:60545492-60545511 None:intergenic 40.0%
TATTTCAATTGCCTCTTCCC+TGG - chr2_1:60545515-60545534 Msa0215350:intron 40.0%
TATTTACTGGTGCACCTTCT+TGG - chr2_1:60545637-60545656 Msa0215350:intron 40.0%
CGGTTTAAATGATGCCAAGA+AGG + chr2_1:60545654-60545673 None:intergenic 40.0%
GGATAATTACATAGGCGGAT+CGG + chr2_1:60545674-60545693 None:intergenic 40.0%
AGAAGTTCAAAGCTGAGAGA+TGG + chr2_1:60545731-60545750 None:intergenic 40.0%
AGGGAAGATTGAAATCCTCA+AGG + chr2_1:60545822-60545841 None:intergenic 40.0%
AATCAAGAAACCTTGTGTGG+TGG + chr2_1:60545845-60545864 None:intergenic 40.0%
ACTCGGTAATGCTTGAAGAT+TGG - chr2_1:60545941-60545960 Msa0215350:intron 40.0%
! ACTGTATCGCTGTTGGTTAA+GGG + chr2_1:60546219-60546238 None:intergenic 40.0%
! AACTGTATCGCTGTTGGTTA+AGG + chr2_1:60546220-60546239 None:intergenic 40.0%
GTTGAAAACTGTATCGCTGT+TGG + chr2_1:60546226-60546245 None:intergenic 40.0%
GCTGTCCAATGCAATAGAAT+TGG + chr2_1:60546308-60546327 None:intergenic 40.0%
TTTGGATGGTGTTTACCTAC+AGG - chr2_1:60546474-60546493 Msa0215350:CDS 40.0%
GTAACTGTTGAGGAGAAAGG+TGG + chr2_1:60541556-60541575 None:intergenic 45.0%
GAGAGACAGTGTAACTGTTG+AGG + chr2_1:60541566-60541585 None:intergenic 45.0%
ACCGGAACTTCATCAAGTTC+CGG - chr2_1:60541658-60541677 Msa0215350:three_prime_UTR 45.0%
ACCGGAACTTGATGAAGTTC+CGG + chr2_1:60541662-60541681 None:intergenic 45.0%
! TGGGTTGAAGAATGGTTTGG+AGG + chr2_1:60541721-60541740 None:intergenic 45.0%
! ACGTGGGTTGAAGAATGGTT+TGG + chr2_1:60541724-60541743 None:intergenic 45.0%
AAACAACGCGAACGGATCTA+GGG + chr2_1:60541863-60541882 None:intergenic 45.0%
TAGATCCGTTCGCGTTGTTT+GGG - chr2_1:60541863-60541882 Msa0215350:intron 45.0%
CCTATCGGCAACAACATTTC+TGG + chr2_1:60541916-60541935 None:intergenic 45.0%
CCAGAAATGTTGTTGCCGAT+AGG - chr2_1:60541913-60541932 Msa0215350:intron 45.0%
TGTTGTTGCCGATAGGCATA+AGG - chr2_1:60541920-60541939 Msa0215350:intron 45.0%
TGCCGATAGGCATAAGGTTA+TGG - chr2_1:60541926-60541945 Msa0215350:intron 45.0%
GCATTTGTCGGTATTCAGAC+TGG - chr2_1:60541948-60541967 Msa0215350:intron 45.0%
CAGACTGGGTTTAGATCTGT+TGG - chr2_1:60541963-60541982 Msa0215350:intron 45.0%
CTGGGTTTAGATCTGTTGGA+AGG - chr2_1:60541967-60541986 Msa0215350:intron 45.0%
! TTGGAAGGCGTGAATCTTTG+AGG - chr2_1:60541982-60542001 Msa0215350:intron 45.0%
TGGTTTCCTTCCGATCCTAA+TGG - chr2_1:60542011-60542030 Msa0215350:intron 45.0%
TGAAGTCCATTAGGATCGGA+AGG + chr2_1:60542020-60542039 None:intergenic 45.0%
CCGTTGAAGTCCATTAGGAT+CGG + chr2_1:60542024-60542043 None:intergenic 45.0%
!! CCGATCCTAATGGACTTCAA+CGG - chr2_1:60542021-60542040 Msa0215350:intron 45.0%
ATCAAATGGAGGATAGGCAG+AGG - chr2_1:60542193-60542212 Msa0215350:intron 45.0%
! CACTGCTAGCTACTTTGCAT+AGG + chr2_1:60542770-60542789 None:intergenic 45.0%
TTTCAGACCCCAAATTGCAC+CGG + chr2_1:60543048-60543067 None:intergenic 45.0%
TCTTCCAAGCTGGAAGCAAT+AGG + chr2_1:60543106-60543125 None:intergenic 45.0%
CTTGGAAGAAGCTACTGGAT+TGG - chr2_1:60543117-60543136 Msa0215350:CDS 45.0%
GCCAGGTGCAATTTCTTTCA+GGG - chr2_1:60543429-60543448 Msa0215350:intron 45.0%
ACCCTGAAAGAAATTGCACC+TGG + chr2_1:60543433-60543452 None:intergenic 45.0%
TCTCATTCCCAGACGTACAT+AGG - chr2_1:60543563-60543582 Msa0215350:intron 45.0%
CATGCATCCTATGTACGTCT+GGG + chr2_1:60543573-60543592 None:intergenic 45.0%
TCATGCATCCTATGTACGTC+TGG + chr2_1:60543574-60543593 None:intergenic 45.0%
GTCCTTCCTGGCTTAATTTC+CGG - chr2_1:60543655-60543674 Msa0215350:intron 45.0%
TTCCGGAAATTAAGCCAGGA+AGG + chr2_1:60543660-60543679 None:intergenic 45.0%
TGAGACGTTTGGAGGAAAAG+GGG + chr2_1:60543982-60544001 None:intergenic 45.0%
GTTGAGACGTTTGGAGGAAA+AGG + chr2_1:60543984-60544003 None:intergenic 45.0%
AGCCAAAGAAGCCAATATGC+TGG + chr2_1:60544146-60544165 None:intergenic 45.0%
TGCTGATGTTGTGTCAAGCT+TGG - chr2_1:60544269-60544288 Msa0215350:intron 45.0%
TGGTCGCTCTTAGGAATAAC+AGG - chr2_1:60544289-60544308 Msa0215350:intron 45.0%
CAGAATTGTGTTTGGTTGGC+TGG - chr2_1:60544478-60544497 Msa0215350:intron 45.0%
ACGGAGATGTTCATGTCATG+TGG - chr2_1:60544564-60544583 Msa0215350:intron 45.0%
TGTTCATGTCATGTGGTCCT+TGG - chr2_1:60544571-60544590 Msa0215350:intron 45.0%
GTTCATGTCATGTGGTCCTT+GGG - chr2_1:60544572-60544591 Msa0215350:intron 45.0%
TATTGCAGTCCTGAGGTTCA+TGG - chr2_1:60544636-60544655 Msa0215350:intron 45.0%
! AACTTGCTCACTGCTCGATA+TGG + chr2_1:60544746-60544765 None:intergenic 45.0%
CATCGACATCAATCGCTGTT+TGG - chr2_1:60545204-60545223 Msa0215350:CDS 45.0%
GACGCTGAAGGAACAATCAA+TGG + chr2_1:60545423-60545442 None:intergenic 45.0%
AAGAAGCTTAGAGTTGGAGG+TGG + chr2_1:60545560-60545579 None:intergenic 45.0%
! AAGAAACCTTGTGTGGTGGA+GGG + chr2_1:60545841-60545860 None:intergenic 45.0%
ACCGAAGAATGAACTCGACT+CGG - chr2_1:60545924-60545943 Msa0215350:intron 45.0%
ACCGAGTCGAGTTCATTCTT+CGG + chr2_1:60545928-60545947 None:intergenic 45.0%
GTGGTTGGGTATAGACGAAT+AGG + chr2_1:60546186-60546205 None:intergenic 45.0%
! CATTTGTTGAGGCACCTTCT+TGG - chr2_1:60546250-60546269 Msa0215350:intron 45.0%
TGGTCAGACATATGCACATG+TGG - chr2_1:60546408-60546427 Msa0215350:CDS 45.0%
TCTGGATTACAGAGACCTGT+AGG + chr2_1:60546492-60546511 None:intergenic 45.0%
GAATGCAGCTGTCCATTTGA+TGG + chr2_1:60546533-60546552 None:intergenic 45.0%
CTGCATTCAGAGTCCAACAA+TGG - chr2_1:60546545-60546564 Msa0215350:CDS 45.0%
GTTGAGGAGAAAGGTGGTGA+CGG + chr2_1:60541550-60541569 None:intergenic 50.0%
! GTGTGACGTGGGTTGAAGAA+TGG + chr2_1:60541729-60541748 None:intergenic 50.0%
TGAGAATCTGCGAAGGGGAA+TGG + chr2_1:60541751-60541770 None:intergenic 50.0%
AAAGGAGGAGGAAGGTGATG+AGG + chr2_1:60541785-60541804 None:intergenic 50.0%
GAGGAGTAAAAGGAGGAGGA+AGG + chr2_1:60541793-60541812 None:intergenic 50.0%
CGATGAGGAGTAAAAGGAGG+AGG + chr2_1:60541797-60541816 None:intergenic 50.0%
CAAACAACGCGAACGGATCT+AGG + chr2_1:60541864-60541883 None:intergenic 50.0%
CTAGATCCGTTCGCGTTGTT+TGG - chr2_1:60541862-60541881 Msa0215350:intron 50.0%
GTGATCCCAAACAACGCGAA+CGG + chr2_1:60541871-60541890 None:intergenic 50.0%
! GTTCGCGTTGTTTGGGATCA+CGG - chr2_1:60541870-60541889 Msa0215350:intron 50.0%
!! AACAACATTTCTGGCGCCGT+TGG + chr2_1:60541907-60541926 None:intergenic 50.0%
!! TTTTCCCCACTAAGTGGGCT+CGG + chr2_1:60542330-60542349 None:intergenic 50.0%
TCCAGCTTGGAAGAAGCTAC+TGG - chr2_1:60543112-60543131 Msa0215350:intron 50.0%
TCCAGTAGCTTCTTCCAAGC+TGG + chr2_1:60543116-60543135 None:intergenic 50.0%
GGCCAGGTGCAATTTCTTTC+AGG - chr2_1:60543428-60543447 Msa0215350:intron 50.0%
TGTCAAGCTTGGTCGCTCTT+AGG - chr2_1:60544280-60544299 Msa0215350:intron 50.0%
GGTCTGTAGACCATCTGCTT+TGG - chr2_1:60544499-60544518 Msa0215350:intron 50.0%
AGCTTAGAGTTGGAGGTGGT+GGG + chr2_1:60545556-60545575 None:intergenic 50.0%
AAGCTTAGAGTTGGAGGTGG+TGG + chr2_1:60545557-60545576 None:intergenic 50.0%
AATCTTCCCTCCACCACACA+AGG - chr2_1:60545832-60545851 Msa0215350:intron 50.0%
CAAGAAACCTTGTGTGGTGG+AGG + chr2_1:60545842-60545861 None:intergenic 50.0%
AAGTGCATTTCAGGGGGTTC+TGG + chr2_1:60546009-60546028 None:intergenic 50.0%
ACCCCCTGAAATGCACTTCA+AGG - chr2_1:60546011-60546030 Msa0215350:intron 50.0%
CCCTTGAAGTGCATTTCAGG+GGG + chr2_1:60546015-60546034 None:intergenic 50.0%
CCCCCTGAAATGCACTTCAA+GGG - chr2_1:60546012-60546031 Msa0215350:intron 50.0%
CCCCTTGAAGTGCATTTCAG+GGG + chr2_1:60546016-60546035 None:intergenic 50.0%
CCCCTGAAATGCACTTCAAG+GGG - chr2_1:60546013-60546032 Msa0215350:intron 50.0%
CCCCCTTGAAGTGCATTTCA+GGG + chr2_1:60546017-60546036 None:intergenic 50.0%
CCCTGAAATGCACTTCAAGG+GGG - chr2_1:60546014-60546033 Msa0215350:intron 50.0%
AGGGTTCGTGTGATGTGGTT+GGG + chr2_1:60546200-60546219 None:intergenic 50.0%
AAGGGTTCGTGTGATGTGGT+TGG + chr2_1:60546201-60546220 None:intergenic 50.0%
GGTTAAGGGTTCGTGTGATG+TGG + chr2_1:60546205-60546224 None:intergenic 50.0%
CGGTTTGAGAGATGCCAAGA+AGG + chr2_1:60546267-60546286 None:intergenic 50.0%
TCCCTTTACCTTCTTCAGGC+CGG - chr2_1:60546734-60546753 Msa0215350:five_prime_UTR 50.0%
ATATAAGGCCGGCCTGAAGA+AGG + chr2_1:60546745-60546764 None:intergenic 50.0%
! CAGGCCGGCCTTATATGTAA+AGG - chr2_1:60546749-60546768 Msa0215350:five_prime_UTR 50.0%
GAAGGGGAATGGTGTGACGT+GGG + chr2_1:60541740-60541759 None:intergenic 55.0%
!! ATTTCTGGCGCCGTTGGTGA+CGG + chr2_1:60541901-60541920 None:intergenic 55.0%
! ACTAAGTGGGCTCGGCTACA+TGG + chr2_1:60542322-60542341 None:intergenic 55.0%
ATGTAGCCGAGCCCACTTAG+TGG - chr2_1:60542321-60542340 Msa0215350:intron 55.0%
TGTAGCCGAGCCCACTTAGT+GGG - chr2_1:60542322-60542341 Msa0215350:intron 55.0%
GAGCCCACTTAGTGGGGAAA+AGG - chr2_1:60542329-60542348 Msa0215350:intron 55.0%
GCTTAGAGTTGGAGGTGGTG+GGG + chr2_1:60545555-60545574 None:intergenic 55.0%
GCCCCCTTGAAGTGCATTTC+AGG + chr2_1:60546018-60546037 None:intergenic 55.0%
GCCGGCCTGAAGAAGGTAAA+GGG + chr2_1:60546738-60546757 None:intergenic 55.0%
!! GAGGAGAAAGGTGGTGACGG+AGG + chr2_1:60541547-60541566 None:intergenic 60.0%
CGAAGGGGAATGGTGTGACG+TGG + chr2_1:60541741-60541760 None:intergenic 60.0%
GGAGGAGGAAGGTGATGAGG+AGG + chr2_1:60541782-60541801 None:intergenic 60.0%
GTAGCCGAGCCCACTTAGTG+GGG - chr2_1:60542323-60542342 Msa0215350:intron 60.0%
GGAAGGGAGGGGACTGAACA+AGG + chr2_1:60545028-60545047 None:intergenic 60.0%
!! GTTGGAGGTGGTGGGGACAA+GGG + chr2_1:60545548-60545567 None:intergenic 60.0%
!! AGTTGGAGGTGGTGGGGACA+AGG + chr2_1:60545549-60545568 None:intergenic 60.0%
GGCCGGCCTGAAGAAGGTAA+AGG + chr2_1:60546739-60546758 None:intergenic 60.0%
CACGGCAACGCCGTCACCAA+CGG - chr2_1:60541888-60541907 Msa0215350:intron 65.0%
AGGGAGGGTAGCCAGGGAAG+AGG + chr2_1:60545529-60545548 None:intergenic 65.0%
GGGACAAGGGAGGGTAGCCA+GGG + chr2_1:60545535-60545554 None:intergenic 65.0%
!! GAGGTGGTGGGGACAAGGGA+GGG + chr2_1:60545544-60545563 None:intergenic 65.0%
GGGGACAAGGGAGGGTAGCC+AGG + chr2_1:60545536-60545555 None:intergenic 70.0%
!! GGAGGTGGTGGGGACAAGGG+AGG + chr2_1:60545545-60545564 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 60541512 60546846 60541512 ID=Msa0215350;Name=Msa0215350
chr2_1 mRNA 60541512 60546846 60541512 ID=Msa0215350-mRNA-1;Parent=Msa0215350;Name=Msa0215350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=190|1|1|1|1|1|7|265|339
chr2_1 exon 60541512 60541862 60541512 ID=Msa0215350-mRNA-1:exon:16648;Parent=Msa0215350-mRNA-1
chr2_1 exon 60543113 60543255 60543113 ID=Msa0215350-mRNA-1:exon:16647;Parent=Msa0215350-mRNA-1
chr2_1 exon 60544048 60544161 60544048 ID=Msa0215350-mRNA-1:exon:16646;Parent=Msa0215350-mRNA-1
chr2_1 exon 60544728 60544827 60544728 ID=Msa0215350-mRNA-1:exon:16645;Parent=Msa0215350-mRNA-1
chr2_1 exon 60544925 60545007 60544925 ID=Msa0215350-mRNA-1:exon:16644;Parent=Msa0215350-mRNA-1
chr2_1 exon 60545089 60545241 60545089 ID=Msa0215350-mRNA-1:exon:16643;Parent=Msa0215350-mRNA-1
chr2_1 exon 60546316 60546846 60546316 ID=Msa0215350-mRNA-1:exon:16642;Parent=Msa0215350-mRNA-1
chr2_1 five_prime_UTR 60546657 60546846 60546657 ID=Msa0215350-mRNA-1:five_prime_utr;Parent=Msa0215350-mRNA-1
chr2_1 CDS 60546316 60546656 60546316 ID=Msa0215350-mRNA-1:cds;Parent=Msa0215350-mRNA-1
chr2_1 CDS 60545089 60545241 60545089 ID=Msa0215350-mRNA-1:cds;Parent=Msa0215350-mRNA-1
chr2_1 CDS 60544925 60545007 60544925 ID=Msa0215350-mRNA-1:cds;Parent=Msa0215350-mRNA-1
chr2_1 CDS 60544728 60544827 60544728 ID=Msa0215350-mRNA-1:cds;Parent=Msa0215350-mRNA-1
chr2_1 CDS 60544048 60544161 60544048 ID=Msa0215350-mRNA-1:cds;Parent=Msa0215350-mRNA-1
chr2_1 CDS 60543113 60543255 60543113 ID=Msa0215350-mRNA-1:cds;Parent=Msa0215350-mRNA-1
chr2_1 CDS 60541777 60541862 60541777 ID=Msa0215350-mRNA-1:cds;Parent=Msa0215350-mRNA-1
chr2_1 three_prime_UTR 60541512 60541776 60541512 ID=Msa0215350-mRNA-1:three_prime_utr;Parent=Msa0215350-mRNA-1
Gene Sequence

>Msa0215350

ATGCCTTCTTCATTTTCCTCCAAACCATTCTTCAACCCACGTCACACCATTCCCCTTCGCAGATTCTCATTCTTCATCCTCCTCATCACCTTCCTCCTCCTTTTACTCCTCATCGTTTTTCTTAAACCGTTTCAAAACAATCGCTGTCTCAACACTAACCCTAGATCCGTTCGCGTTGTTTGGGATCACGGCAACGCCGTCACCAACGGCGCCAGAAATGTTGTTGCCGATAGGCATAAGGTTATGGCATTTGTCGGTATTCAGACTGGGTTTAGATCTGTTGGAAGGCGTGAATCTTTGAGGAAGACTTGGTTTCCTTCCGATCCTAATGGACTTCAACGCTTGGAAGAAGCTACTGGATTGGCTTTTAGGTTTGTTATTGGTAGAACGAGTGATAGATCGAAGATGTCTGCACTTAAAAGGGAAATAGCTGAATATGACGATTTCATTCAATTGGATATTGAAGAGGAGTACAGTAAGCTCCCATACAAAACGTTGGCTTTCTTTAAAGCTGCTTACGCTCTTTTTGTAGCCGAATTTTATGTCAAAGCTGATGATGACATATATTTAAGGCCAGATCGTCTTTCATTACTGCTTGCAAAAGAGAGATCTCATTCCCAGACGTACATAGGATGCATGAAAAAGGGCCCTGTTTTCACTGATCCGAAACTCAAATGGTATGAGCCATTATCTAATTTGCTTGGAAAGGAGTATTTTCTTCATGCTTATGGTCCTATATATGCTCTTTCTGCTGATGTTGTGTCAAGCTTGGTCGCTCTTAGGAATAACAGTTTTCGGATGTTCAGCAATGAGGATGTTACAATTGGAGCTTGGATGCTTGCAATGAATGTCAACCATGAGAATATTCATGAACTTTGTTCTCCAGAATGTACATCGACATCAATCGCTGTTTGGGATATTCCAAAGTGTTCAGGTCTCTGTAATCCAGAAAAGAGAATGTTGGAACTCCATCAAATGGACAGCTGCATTCAGAGTCCAACAATGGAATCTGATGAATAG

Protein sequence

>Msa0215350

MPSSFSSKPFFNPRHTIPLRRFSFFILLITFLLLLLLIVFLKPFQNNRCLNTNPRSVRVVWDHGNAVTNGARNVVADRHKVMAFVGIQTGFRSVGRRESLRKTWFPSDPNGLQRLEEATGLAFRFVIGRTSDRSKMSALKREIAEYDDFIQLDIEEEYSKLPYKTLAFFKAAYALFVAEFYVKADDDIYLRPDRLSLLLAKERSHSQTYIGCMKKGPVFTDPKLKWYEPLSNLLGKEYFLHAYGPIYALSADVVSSLVALRNNSFRMFSNEDVTIGAWMLAMNVNHENIHELCSPECTSTSIAVWDIPKCSGLCNPEKRMLELHQMDSCIQSPTMESDE*