AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334400 MtrunA17_Chr2g0317841 94.517 383 21 0 1 383 1 383 0.0 774
Msa0334400 MtrunA17_Chr2g0317821 90.601 383 36 0 1 383 1 383 0.0 748
Msa0334400 MtrunA17_Chr2g0317811 98.762 323 4 0 379 701 252 574 0.0 659
Msa0334400 MtrunA17_Chr4g0042571 89.711 311 22 1 379 679 244 554 0.0 548
Msa0334400 MtrunA17_Chr4g0074551 54.178 371 166 2 10 379 31 398 1.41e-142 428
Msa0334400 MtrunA17_Chr2g0288071 50.529 378 185 2 3 378 38 415 2.91e-135 409
Msa0334400 MtrunA17_Chr2g0288021 50.653 383 184 3 8 387 9 389 2.09e-132 400
Msa0334400 MtrunA17_Chr4g0074561 51.585 347 164 3 37 379 40 386 2.95e-125 382
Msa0334400 MtrunA17_Chr4g0043091 49.118 340 169 3 10 348 8 344 5.51e-114 352
Msa0334400 MtrunA17_Chr4g0033311 46.547 391 192 6 1 378 1 387 1.08e-113 353
Msa0334400 MtrunA17_Chr6g0482081 43.038 395 212 5 10 398 11 398 2.06e-112 349
Msa0334400 MtrunA17_Chr2g0329191 45.093 377 181 5 32 398 34 394 1.75e-111 346
Msa0334400 MtrunA17_Chr6g0482951 44.504 373 192 4 14 378 22 387 3.37e-111 345
Msa0334400 MtrunA17_Chr7g0242681 51.258 318 153 2 32 348 38 354 3.46e-111 346
Msa0334400 MtrunA17_Chr6g0482941 47.230 343 180 1 6 348 17 358 1.08e-110 344
Msa0334400 MtrunA17_Chr6g0482071 45.889 377 190 6 12 378 13 385 1.49e-110 344
Msa0334400 MtrunA17_Chr3g0088441 48.442 353 172 5 32 378 38 386 6.58e-110 343
Msa0334400 MtrunA17_Chr6g0482131 47.253 364 176 8 24 378 28 384 7.53e-110 342
Msa0334400 MtrunA17_Chr2g0329201 44.335 406 202 7 7 406 13 400 3.05e-109 340
Msa0334400 MtrunA17_Chr4g0033191 47.283 368 180 7 17 378 32 391 2.51e-108 338
Msa0334400 MtrunA17_Chr4g0033271 44.357 381 195 6 32 406 35 404 4.30e-108 337
Msa0334400 MtrunA17_Chr4g0006971 50.625 320 156 2 30 348 25 343 3.49e-107 335
Msa0334400 MtrunA17_Chr4g0033331 47.009 351 180 5 32 378 39 387 1.60e-106 334
Msa0334400 MtrunA17_Chr4g0033401 46.893 354 176 6 32 378 34 382 7.32e-106 332
Msa0334400 MtrunA17_Chr4g0033321 48.910 321 161 3 32 349 33 353 1.63e-105 331
Msa0334400 MtrunA17_Chr7g0242691 49.216 319 160 2 32 349 31 348 8.67e-105 329
Msa0334400 MtrunA17_Chr4g0033201 46.703 364 182 7 20 378 28 384 2.32e-104 328
Msa0334400 MtrunA17_Chr4g0010501 43.631 369 191 5 32 395 24 380 2.43e-104 327
Msa0334400 MtrunA17_Chr3g0090111 43.490 384 202 3 23 402 10 382 4.32e-104 326
Msa0334400 MtrunA17_Chr3g0087261 43.008 379 201 5 31 406 36 402 8.26e-104 326
Msa0334400 MtrunA17_Chr3g0090131 43.947 380 193 5 30 402 19 385 9.94e-104 325
Msa0334400 MtrunA17_Chr4g0042171 45.135 370 191 5 30 396 22 382 2.48e-103 325
Msa0334400 MtrunA17_Chr5g0418871 50.338 296 145 2 51 345 2 296 6.40e-103 318
Msa0334400 MtrunA17_Chr4g0033341 47.278 349 178 5 1 346 39 384 1.68e-102 324
Msa0334400 MtrunA17_Chr1g0195611 45.322 342 182 3 9 348 4 342 7.69e-102 321
Msa0334400 MtrunA17_Chr3g0087271 42.512 414 219 6 1 406 1 403 1.15e-100 318
Msa0334400 MtrunA17_Chr5g0428831 45.029 342 183 3 9 348 4 342 1.74e-100 318
Msa0334400 MtrunA17_Chr1g0195641 46.106 321 168 3 30 348 25 342 4.25e-99 311
Msa0334400 MtrunA17_Chr2g0329321 40.494 405 198 7 1 398 5 373 2.27e-95 303
Msa0334400 MtrunA17_Chr4g0033231 41.689 379 186 6 32 407 41 387 1.12e-92 296
Msa0334400 MtrunA17_Chr4g0033261 44.193 353 169 5 32 381 41 368 8.68e-92 294
Msa0334400 MtrunA17_Chr4g0006111 44.377 329 157 4 22 349 55 358 1.50e-89 290
Msa0334400 MtrunA17_Chr4g0006131 40.256 390 184 9 22 398 32 385 2.02e-88 286
Msa0334400 MtrunA17_Chr5g0430451 42.162 370 159 6 32 381 39 373 3.43e-85 277
Msa0334400 MtrunA17_Chr7g0234131 43.671 316 166 4 33 347 76 380 3.64e-75 251
Msa0334400 MtrunA17_Chr7g0234091 40.000 360 191 5 33 378 76 424 2.33e-72 244
Msa0334400 MtrunA17_Chr7g0234111 42.405 316 170 4 33 347 76 380 1.05e-71 242
Msa0334400 MtrunA17_Chr7g0230651 43.130 262 143 3 87 347 27 283 1.58e-69 232
Msa0334400 MtrunA17_Chr2g0301231 41.438 292 132 6 99 378 1 265 1.55e-59 205
Msa0334400 MtrunA17_Chr7g0236731 45.575 226 117 3 123 347 32 252 1.04e-52 183
Msa0334400 MtrunA17_Chr7g0227561 37.546 269 130 7 34 298 48 282 2.02e-49 175
Msa0334400 MtrunA17_Chr3g0087201 40.865 208 118 3 173 378 16 220 2.75e-48 173
Msa0334400 MtrunA17_Chr3g0087191 47.929 169 80 3 6 172 2 164 8.65e-48 166
Msa0334400 MtrunA17_Chr1g0170031 31.765 340 200 6 379 693 181 513 7.86e-38 149
Msa0334400 MtrunA17_Chr8g0352881 43.564 101 56 1 248 348 51 150 4.09e-21 90.9
Msa0334400 MtrunA17_Chr2g0288031 58.333 60 25 0 182 241 4 63 1.65e-19 82.8
Msa0334400 MtrunA17_Chr4g0025451 32.099 162 98 3 438 587 312 473 1.19e-18 90.1
Msa0334400 MtrunA17_Chr4g0068871 24.901 253 151 8 95 342 183 401 1.56e-13 73.9
Msa0334400 MtrunA17_Chr7g0259841 25.000 240 150 8 370 588 143 373 2.55e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334400 AT1G52980.1 71.787 319 82 2 375 688 250 565 1.65e-150 449
Msa0334400 AT1G61810.4 46.715 411 209 5 10 410 8 418 3.22e-131 394
Msa0334400 AT4G21760.1 44.851 437 221 5 2 429 20 445 4.92e-131 398
Msa0334400 AT4G21760.2 44.444 441 227 5 2 429 20 455 3.22e-130 396
Msa0334400 AT1G61810.1 46.715 411 209 5 10 410 8 418 8.43e-130 394
Msa0334400 AT1G61810.3 46.715 411 209 5 10 410 8 418 8.59e-130 395
Msa0334400 AT1G61820.1 48.187 386 193 5 3 383 1 384 7.85e-127 386
Msa0334400 AT1G02850.2 52.147 326 152 3 31 355 25 347 3.36e-115 356
Msa0334400 AT1G02850.3 49.706 340 144 4 33 348 27 363 8.54e-112 345
Msa0334400 AT1G02850.5 49.415 342 146 4 31 348 25 363 1.96e-110 344
Msa0334400 AT1G02850.4 49.415 342 146 4 31 348 25 363 2.02e-110 344
Msa0334400 AT1G26560.1 48.903 319 161 2 31 348 31 348 1.59e-109 342
Msa0334400 AT5G44640.1 43.873 408 214 7 5 407 4 401 1.96e-108 338
Msa0334400 AT3G18080.1 44.857 350 192 1 32 381 39 387 3.80e-108 338
Msa0334400 AT2G44480.1 45.429 350 188 3 32 379 35 383 5.39e-108 338
Msa0334400 AT2G25630.1 47.875 353 179 5 5 353 4 355 6.71e-108 337
Msa0334400 AT2G44480.3 45.429 350 188 3 32 379 66 414 1.41e-107 338
Msa0334400 AT1G61810.2 51.877 293 137 2 10 298 8 300 1.83e-107 329
Msa0334400 AT3G18070.4 46.605 324 170 2 32 355 30 350 4.44e-106 328
Msa0334400 AT3G18070.1 44.286 350 192 2 32 381 30 376 1.62e-105 331
Msa0334400 AT5G42260.1 43.066 411 218 8 3 407 1 401 4.40e-105 330
Msa0334400 AT5G54570.3 44.415 376 194 7 26 396 24 389 5.32e-105 328
Msa0334400 AT2G44450.1 44.882 381 196 6 31 407 30 400 1.08e-104 329
Msa0334400 AT4G27830.1 48.358 335 170 3 15 348 6 338 5.13e-104 327
Msa0334400 AT3G18070.3 43.714 350 188 2 32 381 30 370 6.28e-104 326
Msa0334400 AT5G54570.1 44.415 376 194 7 26 396 24 389 6.67e-104 328
Msa0334400 AT3G60130.1 44.072 388 204 7 26 409 24 402 1.08e-102 324
Msa0334400 AT1G02850.1 49.080 326 135 4 31 355 25 320 2.11e-102 322
Msa0334400 AT2G44480.4 46.201 329 171 4 27 350 61 388 8.61e-102 317
Msa0334400 AT4G27820.1 45.067 375 194 6 30 400 21 387 9.90e-101 318
Msa0334400 AT1G61810.5 46.226 318 165 3 99 410 1 318 1.88e-99 312
Msa0334400 AT1G60270.1 45.640 344 182 3 8 351 1 339 3.40e-99 310
Msa0334400 AT1G47600.1 43.956 364 184 8 20 378 37 385 2.10e-98 312
Msa0334400 AT1G51470.1 44.505 364 182 8 20 378 37 385 2.38e-98 312
Msa0334400 AT1G47600.2 43.956 364 184 8 20 378 37 385 2.50e-98 312
Msa0334400 AT3G62750.7 47.181 337 164 5 12 348 4 326 6.33e-98 306
Msa0334400 AT3G62750.8 47.181 337 164 5 12 348 4 326 6.33e-98 306
Msa0334400 AT4G22100.1 45.133 339 178 3 8 346 1 331 8.25e-97 308
Msa0334400 AT1G45191.4 40.806 397 220 5 8 400 1 386 2.49e-96 307
Msa0334400 AT3G62750.3 47.181 337 164 5 12 348 30 352 2.64e-96 305
Msa0334400 AT1G60090.1 45.210 334 178 2 15 348 7 335 3.65e-96 306
Msa0334400 AT1G60090.2 45.210 334 178 2 15 348 7 335 4.20e-96 306
Msa0334400 AT3G62750.4 47.181 337 164 5 12 348 30 352 4.40e-96 305
Msa0334400 AT1G45191.5 44.675 338 178 3 8 341 1 333 4.90e-96 303
Msa0334400 AT3G62750.1 47.181 337 164 5 12 348 4 326 5.16e-96 306
Msa0334400 AT1G45191.3 44.675 338 178 3 8 341 1 333 5.53e-96 303
Msa0334400 AT3G62750.2 47.181 337 164 5 12 348 30 352 1.51e-95 305
Msa0334400 AT1G45191.2 44.675 338 178 3 8 341 1 333 3.83e-95 304
Msa0334400 AT1G45191.6 44.675 338 178 3 8 341 1 333 4.41e-95 304
Msa0334400 AT3G62740.2 44.571 350 172 6 3 348 1 332 2.43e-93 296
Msa0334400 AT1G45191.1 43.642 346 182 3 8 341 1 345 2.39e-92 297
Msa0334400 AT3G62740.1 44.571 350 172 6 3 348 1 332 3.35e-92 296
Msa0334400 AT5G36890.2 41.755 376 196 7 34 400 18 379 1.89e-91 293
Msa0334400 AT5G36890.1 41.755 376 196 7 34 400 18 379 2.04e-91 293
Msa0334400 AT5G24550.1 46.855 318 166 3 32 346 32 349 1.23e-90 293
Msa0334400 AT3G60140.2 43.266 349 189 5 1 346 1 343 4.40e-88 284
Msa0334400 AT2G44480.2 45.745 282 151 2 99 379 1 281 4.90e-87 280
Msa0334400 AT3G60140.1 43.266 349 189 5 1 346 1 343 7.84e-87 284
Msa0334400 AT2G44470.2 40.988 344 197 4 1 341 1 341 3.86e-86 276
Msa0334400 AT3G21370.1 45.062 324 169 7 30 347 31 351 1.63e-85 279
Msa0334400 AT2G44470.1 40.988 344 197 4 1 341 1 341 1.69e-85 277
Msa0334400 AT2G32860.2 45.455 319 170 4 31 345 93 411 9.56e-85 280
Msa0334400 AT3G09260.1 43.789 322 171 8 30 345 33 350 3.63e-84 275
Msa0334400 AT2G32860.1 45.312 320 170 5 31 345 93 412 1.23e-83 276
Msa0334400 AT5G24540.2 45.912 318 169 3 32 346 32 349 1.39e-83 272
Msa0334400 AT2G44470.3 40.988 344 197 4 1 341 1 341 1.73e-83 276
Msa0334400 AT5G25980.3 44.548 321 170 6 30 346 48 364 2.42e-83 271
Msa0334400 AT5G25980.1 44.548 321 170 6 30 346 48 364 2.42e-83 271
Msa0334400 AT5G28510.1 42.813 327 176 5 30 347 37 361 1.41e-82 271
Msa0334400 AT5G25980.2 44.548 321 170 6 30 346 48 364 1.49e-82 272
Msa0334400 AT3G03640.1 43.302 321 175 5 32 346 34 353 1.95e-82 271
Msa0334400 AT5G24540.1 45.912 318 169 3 32 346 32 349 3.79e-82 270
Msa0334400 AT3G60120.1 43.963 323 175 5 30 348 12 332 5.97e-81 268
Msa0334400 AT1G75940.1 42.813 327 176 6 28 346 33 356 7.74e-81 267
Msa0334400 AT5G26000.2 42.368 321 178 5 32 348 38 355 1.21e-80 264
Msa0334400 AT2G44460.1 43.553 349 190 5 1 346 1 345 1.54e-80 268
Msa0334400 AT2G44490.1 42.342 333 187 5 19 347 1 332 3.75e-80 266
Msa0334400 AT1G52400.2 42.284 324 180 5 30 348 37 358 4.42e-80 263
Msa0334400 AT1G66280.1 40.336 357 194 7 1 345 1 350 4.57e-80 265
Msa0334400 AT3G60130.2 42.947 319 170 6 94 409 41 350 5.21e-80 263
Msa0334400 AT5G26000.1 42.368 321 178 5 32 348 38 355 6.62e-80 265
Msa0334400 AT5G54570.2 43.709 302 156 6 99 396 1 292 1.36e-79 261
Msa0334400 AT1G52400.3 42.284 324 180 5 30 348 37 358 3.46e-79 262
Msa0334400 AT1G52400.1 42.284 324 180 5 30 348 37 358 3.46e-79 262
Msa0334400 AT3G60130.3 44.444 288 155 4 94 378 41 326 1.25e-78 259
Msa0334400 AT4G27830.2 48.207 251 128 2 99 348 1 250 1.76e-77 254
Msa0334400 AT1G61820.3 46.122 245 130 2 141 383 1 245 1.17e-76 251
Msa0334400 AT4G27820.2 43.791 306 164 5 99 400 1 302 3.09e-76 251
Msa0334400 AT4G27820.3 43.791 306 164 5 99 400 1 302 3.09e-76 251
Msa0334400 AT1G66270.1 40.625 320 181 5 31 345 35 350 4.50e-76 254
Msa0334400 AT1G66270.2 40.000 320 181 6 31 345 35 348 8.72e-73 245
Msa0334400 AT1G60270.2 44.664 253 139 1 99 351 1 252 1.04e-72 238
Msa0334400 AT1G51490.1 41.009 317 157 10 41 346 29 326 6.43e-72 239
Msa0334400 AT5G48375.1 41.379 319 152 6 30 346 36 321 9.47e-71 237
Msa0334400 AT3G62750.6 46.000 250 126 3 99 348 1 241 5.90e-70 234
Msa0334400 AT3G62750.5 46.000 250 126 3 99 348 1 241 5.90e-70 234
Msa0334400 AT2G44450.2 40.154 259 143 4 151 407 1 249 1.09e-54 191
Msa0334400 AT3G18070.5 39.806 206 124 0 176 381 94 299 8.51e-53 186
Msa0334400 AT3G18070.5 49.180 61 31 0 32 92 30 90 1.18e-12 70.5
Msa0334400 AT3G18070.2 39.806 206 124 0 176 381 94 299 3.40e-52 187
Msa0334400 AT3G18070.2 49.180 61 31 0 32 92 30 90 1.54e-12 70.5
Msa0334400 AT3G18070.6 39.037 187 114 0 195 381 1 187 1.57e-46 165
Msa0334400 AT3G18070.7 39.674 184 111 0 195 378 1 184 1.03e-45 166
Msa0334400 AT2G44460.2 44.500 200 108 3 149 346 1 199 3.20e-41 156
Msa0334400 AT3G07050.1 29.747 316 192 5 379 666 175 488 9.98e-41 158
Msa0334400 AT2G44480.5 38.202 178 109 1 202 379 1 177 6.29e-40 149
Msa0334400 AT5G16580.1 40.984 183 103 2 170 351 21 199 9.79e-35 134
Msa0334400 AT1G08410.1 32.222 180 106 5 433 600 308 483 3.48e-20 95.5
Msa0334400 AT2G27200.1 33.533 167 99 3 433 587 303 469 1.40e-19 93.2
Msa0334400 AT3G06510.2 28.342 187 125 6 94 275 159 341 5.81e-15 79.0
Msa0334400 AT3G06510.1 28.342 187 125 6 94 275 159 341 6.38e-15 79.0
Msa0334400 AT4G02790.1 27.155 232 141 7 370 582 142 364 9.52e-13 70.9

Find 190 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAGTGAATTTACTGAATT+AGG 0.142690 2_4:+52723138 None:intergenic
ACAAAGGTCAGCTCCGTTTC+TGG 0.153152 2_4:-52718789 Msa0334400:three_prime_UTR
AACATTTGCAATAGCTTTAA+TGG 0.156377 2_4:+52719149 None:intergenic
AAATGCATCAATTATGCTTT+TGG 0.190939 2_4:-52718739 Msa0334400:three_prime_UTR
CTATCAATTATTTATGATAT+AGG 0.221767 2_4:+52724201 None:intergenic
GGTCATTGTTCCCCTCCTTT+TGG 0.237320 2_4:-52722675 Msa0334400:CDS
CAGTTGCGGGTTTAGCTGTT+AGG 0.243960 2_4:-52718888 Msa0334400:three_prime_UTR
TTCCCAAATGGCTTCCTCTT+TGG 0.245482 2_4:-52724030 Msa0334400:CDS
CTAACAACTTCCAATATATA+TGG 0.250587 2_4:-52724226 Msa0334400:five_prime_UTR
TGATCATTATCATCACTATT+TGG 0.263028 2_4:-52723696 Msa0334400:intron
TATCAATTATTTATGATATA+GGG 0.265295 2_4:+52724202 None:intergenic
GAAGCCGCTCGTCCAATAAA+AGG 0.291960 2_4:-52721798 Msa0334400:CDS
TTTATACCGCAAACAATATC+AGG 0.297815 2_4:-52722571 Msa0334400:intron
CTGGTACATTTCTTTGCTGC+TGG 0.301939 2_4:+52719118 None:intergenic
GTAGTGAATTTACTGAATTA+GGG 0.307506 2_4:+52723139 None:intergenic
AGCAAGCACTTCCTCTTATC+AGG 0.312366 2_4:-52724007 Msa0334400:intron
TGGAGATAGGGTTAAGTATT+GGG 0.316186 2_4:-52722760 Msa0334400:CDS
TGAAGTCCAGGCTGCCTCTT+AGG 0.319947 2_4:+52721883 None:intergenic
CATATATATTGGAAGTTGTT+AGG 0.321027 2_4:+52724227 None:intergenic
CCAAATCTTGTTTCCGACTT+TGG 0.324430 2_4:-52722723 Msa0334400:CDS
GTTCTCTTAAACAAAATATC+AGG 0.325163 2_4:+52718840 None:intergenic
ATGGTAAAGGTTTAAGCAAC+TGG 0.328340 2_4:-52723870 Msa0334400:CDS
TCTGAGGAGCCTAATGTTAA+TGG 0.331391 2_4:-52719216 Msa0334400:CDS
CTCCAAAGAGGAAGCCATTT+GGG 0.333320 2_4:+52724028 None:intergenic
TGCAAGGTTGCTCCAATTCC+AGG 0.333863 2_4:-52720929 Msa0334400:CDS
TTTGTTTATCACCTGGCCTT+TGG 0.336882 2_4:-52718676 Msa0334400:three_prime_UTR
GCTGAGATGCGCTCTATTCT+TGG 0.342894 2_4:-52721945 Msa0334400:CDS
GAAACTCATGATTCACTTGT+TGG 0.343827 2_4:+52718910 None:intergenic
GATATAGGGCCCATATATAT+TGG 0.344178 2_4:+52724216 None:intergenic
ACTGATGACTTCCCAACATT+TGG 0.350955 2_4:+52721133 None:intergenic
GCAAGTATTAATAAGTCCTT+TGG 0.355327 2_4:-52721414 Msa0334400:CDS
AATGTAACAGGAGGGATATA+TGG 0.359669 2_4:-52723403 Msa0334400:intron
ATAGACAATCTGCTACTTAG+AGG 0.359906 2_4:-52723340 Msa0334400:intron
GTTGCCTAGGTTCTCATCTA+AGG 0.375503 2_4:-52721916 Msa0334400:CDS
GTGATAGACAAGCTGCAAAC+AGG 0.383393 2_4:-52722396 Msa0334400:CDS
ATCATCTGGCAAACTCCTTA+AGG 0.385274 2_4:-52719689 Msa0334400:intron
AAAGATGCGGCGGACCATAT+AGG 0.394706 2_4:-52720138 Msa0334400:CDS
GTTTCAAAACCTCGCCTATA+TGG 0.397582 2_4:+52720124 None:intergenic
AGAATAGAGCGCATCTCAGC+AGG 0.403695 2_4:+52721948 None:intergenic
CCAAAGTCGGAAACAAGATT+TGG 0.405098 2_4:+52722723 None:intergenic
AACAAGATTTGGCTCATTGA+TGG 0.413808 2_4:+52722734 None:intergenic
GAATCATGAGTTTCAGTTGC+GGG 0.414469 2_4:-52718901 Msa0334400:exon
TCTAAGAGGTTCATACATAA+AGG 0.417000 2_4:+52722429 None:intergenic
TAAAGAAGATGCGGCGGAAA+TGG 0.417471 2_4:+52718812 None:intergenic
TCTGTATAATCCCCAGTGTC+TGG 0.420228 2_4:+52719039 None:intergenic
TTGTTACCTGATATTGTTTG+CGG 0.421555 2_4:+52722565 None:intergenic
TTGGAGATAGGGTTAAGTAT+TGG 0.424221 2_4:-52722761 Msa0334400:CDS
ATGTAACAGGAGGGATATAT+GGG 0.426627 2_4:-52723402 Msa0334400:intron
GCTCCAAAGAGGAAGCCATT+TGG 0.426924 2_4:+52724027 None:intergenic
CTTCAGCTTTGCAAATCATC+TGG 0.430614 2_4:-52719703 Msa0334400:CDS
TGCTTAGGGTTCACTTCTAT+CGG 0.432048 2_4:-52721221 Msa0334400:intron
CTGAGATGCGCTCTATTCTT+GGG 0.432170 2_4:-52721944 Msa0334400:CDS
TCAAGACTGGCCACAAGAGC+TGG 0.433690 2_4:-52723189 Msa0334400:CDS
ACATCTATGCCATTAACATT+AGG 0.435407 2_4:+52719207 None:intergenic
TGGCATTCCAATTGGTGATC+AGG 0.439107 2_4:-52721748 Msa0334400:intron
TATATCGAAGTAGCTTATAA+TGG 0.439451 2_4:+52718564 None:intergenic
TGGCAGCAGATGCCTGGTTA+TGG 0.442559 2_4:+52719169 None:intergenic
TTAGCTGTTAGGGTTTATGT+TGG 0.450799 2_4:-52718877 Msa0334400:three_prime_UTR
TCATCTTTGCTGCGGTCATA+AGG 0.452623 2_4:+52719310 None:intergenic
CAAAGAAATGTACCAGTTCA+AGG 0.453415 2_4:-52719111 Msa0334400:CDS
TATAAATTAAGCTTCAGTTA+TGG 0.454925 2_4:-52718699 Msa0334400:three_prime_UTR
AAGGCATCCTGTCGCGGAGG+AGG 0.459375 2_4:+52719246 None:intergenic
CGCCGCATCTTCTTTAACAA+AGG 0.460011 2_4:-52718805 Msa0334400:three_prime_UTR
AGTTGCGGGTTTAGCTGTTA+GGG 0.461398 2_4:-52718887 Msa0334400:three_prime_UTR
AAACTCATGATTCACTTGTT+GGG 0.461628 2_4:+52718911 None:intergenic
TTATATAAATCCCCTTGAAC+TGG 0.467150 2_4:+52719099 None:intergenic
TCACATTCTTCATCTCTAAG+AGG 0.467731 2_4:+52722415 None:intergenic
TGGTACATTTCTTTGCTGCT+GGG 0.469996 2_4:+52719119 None:intergenic
CAAGAGCTGGAACAAAGATA+TGG 0.472569 2_4:-52723176 Msa0334400:CDS
TTGTTGGATATCCAAATGTT+GGG 0.472784 2_4:-52721144 Msa0334400:CDS
GTGGATGGATCCTGCTCAGA+TGG 0.476614 2_4:+52718973 None:intergenic
CTTTAATGGCAGCAGATGCC+TGG 0.480035 2_4:+52719163 None:intergenic
CCAGTATAACAGTTTCCAAA+AGG 0.480207 2_4:+52722660 None:intergenic
AGAGGCAGCCTGGACTTCAT+TGG 0.482888 2_4:-52721879 Msa0334400:CDS
TATCTTTGTTCCAGCTCTTG+TGG 0.483806 2_4:+52723179 None:intergenic
ACAAGTATATACCTGATAAG+AGG 0.485883 2_4:+52723996 None:intergenic
GCAGAAATAAGTTGCTCAGA+TGG 0.487234 2_4:+52718943 None:intergenic
GTGCGATCTAATTCCTGCTT+GGG 0.492181 2_4:-52721493 Msa0334400:CDS
TAACAACTTCCAATATATAT+GGG 0.493274 2_4:-52724225 Msa0334400:five_prime_UTR
ATGAGTACCTGATCACCAAT+TGG 0.493854 2_4:+52721741 None:intergenic
TTCCAGGGGAAACAAAAGTC+TGG 0.495795 2_4:-52720913 Msa0334400:CDS
TTCTTGGGAACCAGTTGCCT+AGG 0.497759 2_4:-52721929 Msa0334400:CDS
CACTGAGGTCCCATCTGAGC+AGG 0.498975 2_4:-52718983 Msa0334400:CDS
TTCATTGGCATCAATAACTA+CGG 0.499196 2_4:-52721864 Msa0334400:CDS
TAGATGAGAACCTAGGCAAC+TGG 0.500134 2_4:+52721919 None:intergenic
ATTCCTGCTTGGGCAACAAA+AGG 0.500766 2_4:-52721483 Msa0334400:CDS
TGATGATGAATTGTCACAAA+TGG 0.504920 2_4:+52723209 None:intergenic
AGTGCGATCTAATTCCTGCT+TGG 0.506473 2_4:-52721494 Msa0334400:CDS
GCAAAGCAAGGTGGAACCAT+TGG 0.506834 2_4:-52722466 Msa0334400:CDS
TTTGCTGCGGTCATAAGGTC+AGG 0.508113 2_4:+52719315 None:intergenic
CTGACCAACTTCCAGACACT+GGG 0.509068 2_4:-52719050 Msa0334400:CDS
TTGTTGTGGTAGACAACTCC+TGG 0.509529 2_4:+52720848 None:intergenic
GAGTCTCCTAAGAGGCAGCC+TGG 0.514131 2_4:-52721889 Msa0334400:CDS
GCAACTTATTTCTGCTGAGC+CGG 0.516301 2_4:-52718935 Msa0334400:CDS
TTTGTTGGATATCCAAATGT+TGG 0.518902 2_4:-52721145 Msa0334400:CDS
ATCAAATTGATGTCATCACT+TGG 0.520414 2_4:-52723557 Msa0334400:CDS
CATGATTCACTTGTTGGGAC+CGG 0.522319 2_4:+52718916 None:intergenic
TCATTGGCATCAATAACTAC+GGG 0.523195 2_4:-52721863 Msa0334400:CDS
ATGAGAGGAACATATTCTCC+TGG 0.525155 2_4:-52722696 Msa0334400:CDS
TGACAATTCATCATCAAGAC+TGG 0.526302 2_4:-52723202 Msa0334400:CDS
CTGCTTGGGCAACAAAAGGA+TGG 0.530434 2_4:-52721479 Msa0334400:CDS
TATTGATGCCAATGAAGTCC+AGG 0.531915 2_4:+52721871 None:intergenic
GTTATGGTTTGTTTATCACC+TGG 0.534521 2_4:-52718683 Msa0334400:three_prime_UTR
GAGCTTATAAAATAAAAGAA+TGG 0.536265 2_4:-52720077 Msa0334400:intron
AGTAGATCTCAATTCCCAAA+TGG 0.537495 2_4:-52724042 Msa0334400:CDS
AGGACTTATTAATACTTGCA+TGG 0.542141 2_4:+52721418 None:intergenic
GATAAGCAAGCAATATCTGT+TGG 0.542451 2_4:-52721169 Msa0334400:CDS
GCTGACCAACTTCCAGACAC+TGG 0.544164 2_4:-52719051 Msa0334400:CDS
ATGAGAGATGGCATTCCAAT+TGG 0.546379 2_4:-52721756 Msa0334400:CDS
TATAACAGTTTCCAAAAGGA+GGG 0.548571 2_4:+52722664 None:intergenic
TAATATGTCATAGGTTTGCA+AGG 0.549737 2_4:-52720945 Msa0334400:intron
TGATACTTCACGATTGGCAG+AGG 0.551420 2_4:-52719290 Msa0334400:CDS
CAAAGATGATACTTCACGAT+TGG 0.552750 2_4:-52719296 Msa0334400:CDS
GCAAGGTTGCTCCAATTCCA+GGG 0.553714 2_4:-52720928 Msa0334400:CDS
TCCGACTTTGGCTTTATGAG+AGG 0.555997 2_4:-52722711 Msa0334400:CDS
TGAAACAGATGTTGTGCTGA+AGG 0.557161 2_4:-52720819 Msa0334400:CDS
AGACAAATGAAGTCCAGAAA+CGG 0.558514 2_4:+52718776 None:intergenic
CATCTCTGTATCCAAAGGCC+AGG 0.558532 2_4:+52718665 None:intergenic
AATCCCCAGTGTCTGGAAGT+TGG 0.559535 2_4:+52719046 None:intergenic
CAAACAACTGGGATGAGAGA+TGG 0.560832 2_4:-52721768 Msa0334400:CDS
AGGCATCCTGTCGCGGAGGA+GGG 0.561993 2_4:+52719247 None:intergenic
ATGATTTGCAAAGCTGAAGT+AGG 0.563324 2_4:+52719707 None:intergenic
ATGATAAACAATGATGAGAA+TGG 0.565100 2_4:-52723731 Msa0334400:CDS
TTGTAGAACATAACTCCACT+TGG 0.565184 2_4:+52723370 None:intergenic
GGATGCCTTGTCCGAGTCTG+AGG 0.567765 2_4:-52719232 Msa0334400:CDS
ATGTTTATCCAGGCAAAGCA+AGG 0.570234 2_4:-52722478 Msa0334400:intron
AAAGAAATGTACCAGTTCAA+GGG 0.570482 2_4:-52719110 Msa0334400:CDS
TATGTTGCTGTCACATGCTA+AGG 0.572657 2_4:-52722601 Msa0334400:CDS
AACATTAGGCTCCTCAGACT+CGG 0.574413 2_4:+52719221 None:intergenic
TATTAATAAGTCCTTTGGAA+AGG 0.575592 2_4:-52721409 Msa0334400:intron
TGGAACAAAGATATGGTGGT+TGG 0.575720 2_4:-52723169 Msa0334400:CDS
CTTGCATGGAATGCTAGCGT+TGG 0.576468 2_4:+52721432 None:intergenic
TCAGATGGGACCTCAGTGGA+TGG 0.578068 2_4:+52718988 None:intergenic
TGAAGATAGTGACGCATCTG+AGG 0.578703 2_4:-52719016 Msa0334400:CDS
AAGGAGAAGAGTCTCCTAAG+AGG 0.579882 2_4:-52721897 Msa0334400:CDS
CTTCGAGAGGGCAAGTAGAG+AGG 0.585854 2_4:+52721817 None:intergenic
CAAGGTTGCTCCAATTCCAG+GGG 0.586597 2_4:-52720927 Msa0334400:CDS
AAAATCATCTCTGTATCCAA+AGG 0.588439 2_4:+52718660 None:intergenic
AAAGGAGGGGAACAATGACC+AGG 0.590901 2_4:+52722678 None:intergenic
GTATAACAGTTTCCAAAAGG+AGG 0.592884 2_4:+52722663 None:intergenic
GACCTTTGTTAAAGAAGATG+CGG 0.598752 2_4:+52718803 None:intergenic
TGGATGGATCCTGCTCAGAT+GGG 0.599401 2_4:+52718974 None:intergenic
AGGAAGTGCTTGCTCCAAAG+AGG 0.603083 2_4:+52724016 None:intergenic
GATACTTCACGATTGGCAGA+GGG 0.606800 2_4:-52719289 Msa0334400:CDS
TCGGACAAGGCATCCTGTCG+CGG 0.610044 2_4:+52719240 None:intergenic
TGATAGACAAGCTGCAAACA+GGG 0.611361 2_4:-52722395 Msa0334400:CDS
TCCTCTCATAAAGCCAAAGT+CGG 0.613581 2_4:+52722710 None:intergenic
GCAACATATTGTGCATAGCA+AGG 0.614479 2_4:+52722616 None:intergenic
CAAGGCAGTTGACCATAACC+AGG 0.614954 2_4:-52719181 Msa0334400:CDS
TCAAATTGATGTCATCACTT+GGG 0.615282 2_4:-52723556 Msa0334400:CDS
AAGAAATGTACCAGTTCAAG+GGG 0.617586 2_4:-52719109 Msa0334400:CDS
AGGCTCCTCAGACTCGGACA+AGG 0.620195 2_4:+52719227 None:intergenic
TTGGACGAGCGGCTTCGAGA+GGG 0.621060 2_4:+52721805 None:intergenic
TGGTAAAGGTTTAAGCAACT+GGG 0.623254 2_4:-52723869 Msa0334400:CDS
CCAGCCTATGACAAAAGCAT+AGG 0.624034 2_4:+52722372 None:intergenic
AGATGTTGTGCTGAAGGGTG+TGG 0.624230 2_4:-52720813 Msa0334400:intron
GGTATGTGCAACAATACCAA+TGG 0.624553 2_4:+52722450 None:intergenic
CTACGGGGCTCTCTATGTCA+AGG 0.624808 2_4:-52721847 Msa0334400:CDS
ATAACAGTTTCCAAAAGGAG+GGG 0.626184 2_4:+52722665 None:intergenic
TCAAAAGTATACCTTTCCAA+AGG 0.626771 2_4:+52721398 None:intergenic
GAAACAGATGTTGTGCTGAA+GGG 0.627938 2_4:-52720818 Msa0334400:CDS
TGAATCATGAGTTTCAGTTG+CGG 0.629227 2_4:-52718902 Msa0334400:exon
TTGCTCAGATGGAACATCAG+TGG 0.632602 2_4:+52718954 None:intergenic
CTGTTTCAGAGTCATTGTTG+TGG 0.635053 2_4:+52720834 None:intergenic
TAGTGAATTTACTGAATTAG+GGG 0.635079 2_4:+52723140 None:intergenic
AGATAGTGACGCATCTGAGG+AGG 0.635212 2_4:-52719013 Msa0334400:CDS
CTTTGTTAAAGAAGATGCGG+CGG 0.638625 2_4:+52718806 None:intergenic
CTGCTCAGATGGGACCTCAG+TGG 0.639451 2_4:+52718984 None:intergenic
GAATAGAGCGCATCTCAGCA+GGG 0.641200 2_4:+52721949 None:intergenic
ATTGGACGAGCGGCTTCGAG+AGG 0.642495 2_4:+52721804 None:intergenic
AGTATATTACCCTTACAAAG+AGG 0.647626 2_4:-52720889 Msa0334400:CDS
GACAAGGCATCCTGTCGCGG+AGG 0.650985 2_4:+52719243 None:intergenic
GAGCTGGAACAAAGATATGG+TGG 0.651160 2_4:-52723173 Msa0334400:CDS
GATGTATTCAGTCACAAACC+AGG 0.651357 2_4:-52723847 Msa0334400:intron
AGCAAGGAGAGGCTCAACAT+CGG 0.658728 2_4:+52722632 None:intergenic
TCAGATGGAACATCAGTGGA+TGG 0.659620 2_4:+52718958 None:intergenic
GTGAAGTATCATCTTTGCTG+CGG 0.666582 2_4:+52719302 None:intergenic
AACAAACTTGAAAGATGCGG+CGG 0.666795 2_4:-52720148 Msa0334400:CDS
TGCGGCGGACCATATAGGCG+AGG 0.667170 2_4:-52720133 Msa0334400:CDS
TAATGGCATAGATGTTGACA+AGG 0.669203 2_4:-52719199 Msa0334400:CDS
TGTAACAAACTTGAAAGATG+CGG 0.682782 2_4:-52720151 Msa0334400:CDS
TTCTCCTTAGATGAGAACCT+AGG 0.684778 2_4:+52721912 None:intergenic
TTTATCCAGGCAAAGCAAGG+TGG 0.685226 2_4:-52722475 Msa0334400:intron
TATGGGGACATAAATCCAAG+TGG 0.685998 2_4:-52723385 Msa0334400:CDS
ATATTGTGCATAGCAAGGAG+AGG 0.695537 2_4:+52722621 None:intergenic
ATACTTCACGATTGGCAGAG+GGG 0.703263 2_4:-52719288 Msa0334400:CDS
CATTGGCATCAATAACTACG+GGG 0.728835 2_4:-52721862 Msa0334400:CDS
TGTAACAGGAGGGATATATG+GGG 0.732664 2_4:-52723401 Msa0334400:intron
TGACCAACTTCCAGACACTG+GGG 0.753638 2_4:-52719049 Msa0334400:CDS
TGAGGAGGATCCATCCACTG+AGG 0.772372 2_4:-52718998 Msa0334400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAATTATTTATGATATA+GGG + chr2_4:52718618-52718637 None:intergenic 10.0%
!! TGTATAATTAAAATACAATT+TGG - chr2_4:52719050-52719069 Msa0334400:CDS 10.0%
!!! TTTTTACATTACTAAAAAAA+AGG + chr2_4:52719707-52719726 None:intergenic 10.0%
!! TAATATTCTCAATTTATTAT+TGG - chr2_4:52719790-52719809 Msa0334400:intron 10.0%
!! TAAATAAAATAGTTTAAATG+AGG - chr2_4:52722508-52722527 Msa0334400:intron 10.0%
!! AAATAAAATAGTTTAAATGA+GGG - chr2_4:52722509-52722528 Msa0334400:intron 10.0%
!! TTACTTTGATATTAAAAAAA+AGG - chr2_4:52723177-52723196 Msa0334400:CDS 10.0%
!! CTATCAATTATTTATGATAT+AGG + chr2_4:52718619-52718638 None:intergenic 15.0%
!! AATAAAAAAAGAAATTTACC+TGG + chr2_4:52718991-52719010 None:intergenic 15.0%
!!! TATATAGATTTTCAATTTCA+TGG - chr2_4:52719291-52719310 Msa0334400:CDS 15.0%
!! TAGTTTAAATTCAAACAAAT+TGG + chr2_4:52720673-52720692 None:intergenic 15.0%
!! ATAATGAATTTATATTCTGT+GGG + chr2_4:52722378-52722397 None:intergenic 15.0%
!! TATAATGAATTTATATTCTG+TGG + chr2_4:52722379-52722398 None:intergenic 15.0%
!!! TTAATACTTTACTTATTTTC+AGG - chr2_4:52722639-52722658 Msa0334400:CDS 15.0%
!! AAAAACAAGAATATAAAAGT+TGG + chr2_4:52722821-52722840 None:intergenic 15.0%
!! TAACAACTTCCAATATATAT+GGG - chr2_4:52718592-52718611 Msa0334400:three_prime_UTR 20.0%
!! AAAATATCTCAGAAGAAAAA+AGG + chr2_4:52718854-52718873 None:intergenic 20.0%
!! TCAATCTACAAAGAAAAAAA+AGG + chr2_4:52718910-52718929 None:intergenic 20.0%
!!! TTTTTTTCTTTGTAGATTGA+AGG - chr2_4:52718910-52718929 Msa0334400:exon 20.0%
!!! ATACAATTTGGTAAATTTTC+AGG - chr2_4:52719062-52719081 Msa0334400:CDS 20.0%
!!! TGATTTGAAATATAAGATTG+TGG + chr2_4:52719367-52719386 None:intergenic 20.0%
!!! TTTTGTAATATTTCTACGTT+AGG - chr2_4:52720299-52720318 Msa0334400:intron 20.0%
!! CTATTAGTTGAAATTCAAAT+AGG - chr2_4:52720588-52720607 Msa0334400:intron 20.0%
!! TGAATTTAAACTAATAAGTG+AGG - chr2_4:52720680-52720699 Msa0334400:intron 20.0%
!! GAATTTAAACTAATAAGTGA+GGG - chr2_4:52720681-52720700 Msa0334400:intron 20.0%
!! TGCTAAAATACTTATAATTC+TGG + chr2_4:52721830-52721849 None:intergenic 20.0%
!!! AGAATTATAAGTATTTTAGC+AGG - chr2_4:52721829-52721848 Msa0334400:CDS 20.0%
!! TTCAAAAACCAGAAAAATAT+AGG + chr2_4:52722201-52722220 None:intergenic 20.0%
!!! ATATTATTCATGTGTTGTTT+TGG - chr2_4:52722229-52722248 Msa0334400:intron 20.0%
!!! TATTATTCATGTGTTGTTTT+GGG - chr2_4:52722230-52722249 Msa0334400:intron 20.0%
!!! GTCATATACTCATATTTTAA+TGG - chr2_4:52722433-52722452 Msa0334400:CDS 20.0%
!!! ATAATATAAAGAGCATACAT+GGG + chr2_4:52722565-52722584 None:intergenic 20.0%
!!! TATAATATAAAGAGCATACA+TGG + chr2_4:52722566-52722585 None:intergenic 20.0%
!! GAGCTTATAAAATAAAAGAA+TGG - chr2_4:52722740-52722759 Msa0334400:CDS 20.0%
!! AATTCAAAAAGAATACCTTA+AGG + chr2_4:52723146-52723165 None:intergenic 20.0%
!! AAAGTTCAAGAAAAACAAAT+TGG + chr2_4:52723411-52723430 None:intergenic 20.0%
!! TATATTTCTTATGTAAGACA+AGG - chr2_4:52723431-52723450 Msa0334400:intron 20.0%
!! TATAAATTAAGCTTCAGTTA+TGG - chr2_4:52724118-52724137 Msa0334400:CDS 20.0%
! CATATATATTGGAAGTTGTT+AGG + chr2_4:52718593-52718612 None:intergenic 25.0%
! CTAACAACTTCCAATATATA+TGG - chr2_4:52718591-52718610 Msa0334400:three_prime_UTR 25.0%
! GTTGAATGAAAATGCAAAAA+TGG - chr2_4:52718674-52718693 Msa0334400:three_prime_UTR 25.0%
! ATGATAAACAATGATGAGAA+TGG - chr2_4:52719086-52719105 Msa0334400:CDS 25.0%
! TGATCATTATCATCACTATT+TGG - chr2_4:52719121-52719140 Msa0334400:CDS 25.0%
! TATAAATGATTGTCTTTGAC+AGG - chr2_4:52719232-52719251 Msa0334400:CDS 25.0%
! AACTAGTTATGTGAACATTT+CGG + chr2_4:52719343-52719362 None:intergenic 25.0%
! TTCTTAGTTATACCTAAATC+CGG - chr2_4:52719557-52719576 Msa0334400:intron 25.0%
! TAGTGAATTTACTGAATTAG+GGG + chr2_4:52719680-52719699 None:intergenic 25.0%
! GTAGTGAATTTACTGAATTA+GGG + chr2_4:52719681-52719700 None:intergenic 25.0%
! AGTAGTGAATTTACTGAATT+AGG + chr2_4:52719682-52719701 None:intergenic 25.0%
!! GATCTGTTAATTCAAACTTT+TGG + chr2_4:52719959-52719978 None:intergenic 25.0%
! AGTTTGAATTAACAGATCAA+TGG - chr2_4:52719961-52719980 Msa0334400:intron 25.0%
!!! GAAATTTGTTTTAAGAGCTT+TGG - chr2_4:52720037-52720056 Msa0334400:intron 25.0%
! ACAAAAAATGCTTTCAGTTT+AGG + chr2_4:52720285-52720304 None:intergenic 25.0%
! ATGTCTATTATCCATACAAA+TGG - chr2_4:52720528-52720547 Msa0334400:intron 25.0%
! AATATACTCACAAAATAGTG+AGG + chr2_4:52720614-52720633 None:intergenic 25.0%
! AAATTGGTCCAAATTTATGT+GGG + chr2_4:52720657-52720676 None:intergenic 25.0%
! TGACAGGAATTAATAGAAAA+TGG - chr2_4:52720769-52720788 Msa0334400:intron 25.0%
! GTTCTTGTCATTATGTTATA+TGG - chr2_4:52721112-52721131 Msa0334400:CDS 25.0%
!! TATTAATAAGTCCTTTGGAA+AGG - chr2_4:52721408-52721427 Msa0334400:intron 25.0%
!!! TTCATCTTTAGTTGATTTGT+TGG - chr2_4:52721443-52721462 Msa0334400:CDS 25.0%
!!! TTCCTGCTTAAGTTTTAATT+AGG - chr2_4:52721764-52721783 Msa0334400:CDS 25.0%
! CAAACCTATGACATATTAAT+CGG + chr2_4:52721870-52721889 None:intergenic 25.0%
! AGATTACTAAACAATCATGT+TGG - chr2_4:52722147-52722166 Msa0334400:intron 25.0%
! AAAATATAGGATGTATCACA+AGG + chr2_4:52722188-52722207 None:intergenic 25.0%
!! TGATACATCCTATATTTTTC+TGG - chr2_4:52722190-52722209 Msa0334400:intron 25.0%
! TAATATTGTTCCTATTGTAG+TGG - chr2_4:52722406-52722425 Msa0334400:CDS 25.0%
! AATATTGTTCCTATTGTAGT+GGG - chr2_4:52722407-52722426 Msa0334400:CDS 25.0%
!!! AACATTTGCAATAGCTTTAA+TGG + chr2_4:52723671-52723690 None:intergenic 25.0%
! GTTCTCTTAAACAAAATATC+AGG + chr2_4:52723980-52723999 None:intergenic 25.0%
!! AAATGCATCAATTATGCTTT+TGG - chr2_4:52724078-52724097 Msa0334400:CDS 25.0%
!! AATGCATCAATTATGCTTTT+GGG - chr2_4:52724079-52724098 Msa0334400:CDS 25.0%
! TATATCGAAGTAGCTTATAA+TGG + chr2_4:52724256-52724275 None:intergenic 25.0%
ACAAGTATATACCTGATAAG+AGG + chr2_4:52718824-52718843 None:intergenic 30.0%
ATCAAATTGATGTCATCACT+TGG - chr2_4:52719260-52719279 Msa0334400:CDS 30.0%
TCAAATTGATGTCATCACTT+GGG - chr2_4:52719261-52719280 Msa0334400:CDS 30.0%
! GATTTTCAATTTCATGGTCT+AGG - chr2_4:52719297-52719316 Msa0334400:CDS 30.0%
ACTAGTTATGTGAACATTTC+GGG + chr2_4:52719342-52719361 None:intergenic 30.0%
CTTTGTTCATGAAATGTAAC+AGG - chr2_4:52719402-52719421 Msa0334400:intron 30.0%
TCTTAGTTATACCTAAATCC+GGG - chr2_4:52719558-52719577 Msa0334400:intron 30.0%
! TGATGATGAATTGTCACAAA+TGG + chr2_4:52719611-52719630 None:intergenic 30.0%
TTGATTGTAACCAAATGTGT+TGG + chr2_4:52719765-52719784 None:intergenic 30.0%
AGTGCTAGATATAGAATACT+TGG - chr2_4:52719872-52719891 Msa0334400:intron 30.0%
!!! TTTTAAGAGCTTTGGAGATA+GGG - chr2_4:52720045-52720064 Msa0334400:intron 30.0%
TATAACAGTTTCCAAAAGGA+GGG + chr2_4:52720156-52720175 None:intergenic 30.0%
TTTATACCGCAAACAATATC+AGG - chr2_4:52720246-52720265 Msa0334400:intron 30.0%
TTGTTACCTGATATTGTTTG+CGG + chr2_4:52720255-52720274 None:intergenic 30.0%
! TGTAATATTTCTACGTTAGG+TGG - chr2_4:52720302-52720321 Msa0334400:intron 30.0%
! GTAATATTTCTACGTTAGGT+GGG - chr2_4:52720303-52720322 Msa0334400:intron 30.0%
TACTGAATTGATGTTTATCC+AGG - chr2_4:52720329-52720348 Msa0334400:intron 30.0%
TCTAAGAGGTTCATACATAA+AGG + chr2_4:52720391-52720410 None:intergenic 30.0%
CAAATTGGTCCAAATTTATG+TGG + chr2_4:52720658-52720677 None:intergenic 30.0%
GAATGTACGTTATTAATGAC+AGG - chr2_4:52720753-52720772 Msa0334400:intron 30.0%
TTCATTGGCATCAATAACTA+CGG - chr2_4:52720953-52720972 Msa0334400:intron 30.0%
! GTTTGCAAAAAGCCTTTTAT+TGG + chr2_4:52721034-52721053 None:intergenic 30.0%
AACATAATGACAAGAACAGT+TGG + chr2_4:52721109-52721128 None:intergenic 30.0%
AGGACTTATTAATACTTGCA+TGG + chr2_4:52721402-52721421 None:intergenic 30.0%
GCAAGTATTAATAAGTCCTT+TGG - chr2_4:52721403-52721422 Msa0334400:intron 30.0%
! TCAAAAGTATACCTTTCCAA+AGG + chr2_4:52721422-52721441 None:intergenic 30.0%
ATTAACGCATTACTGGAAAT+TGG + chr2_4:52721469-52721488 None:intergenic 30.0%
! TTCATTGATTAACGCATTAC+TGG + chr2_4:52721476-52721495 None:intergenic 30.0%
ATAAAAAAGACAAGTGAAGC+TGG - chr2_4:52721495-52721514 Msa0334400:CDS 30.0%
! TGAAGGTATACAAGTGTTAA+TGG + chr2_4:52721543-52721562 None:intergenic 30.0%
ATAAGATAGCAAATAGCTGA+AGG + chr2_4:52721560-52721579 None:intergenic 30.0%
TATTGCTCATTATCATGCTT+AGG - chr2_4:52721581-52721600 Msa0334400:intron 30.0%
ATTGCTCATTATCATGCTTA+GGG - chr2_4:52721582-52721601 Msa0334400:intron 30.0%
TTTGTTGGATATCCAAATGT+TGG - chr2_4:52721672-52721691 Msa0334400:intron 30.0%
TTGTTGGATATCCAAATGTT+GGG - chr2_4:52721673-52721692 Msa0334400:intron 30.0%
CTCCTAATTAAAACTTAAGC+AGG + chr2_4:52721769-52721788 None:intergenic 30.0%
TAATATGTCATAGGTTTGCA+AGG - chr2_4:52721872-52721891 Msa0334400:CDS 30.0%
AGTATATTACCCTTACAAAG+AGG - chr2_4:52721928-52721947 Msa0334400:CDS 30.0%
CAAAAAGATCCTCTTTGTAA+GGG + chr2_4:52721940-52721959 None:intergenic 30.0%
TCAAAAAGATCCTCTTTGTA+AGG + chr2_4:52721941-52721960 None:intergenic 30.0%
!! ATCTTTTTGATTGATTGTCC+AGG - chr2_4:52721951-52721970 Msa0334400:CDS 30.0%
!! CTCTTGTTTCCTTTTTACTT+TGG - chr2_4:52722035-52722054 Msa0334400:intron 30.0%
ATATTGTTCCTATTGTAGTG+GGG - chr2_4:52722408-52722427 Msa0334400:CDS 30.0%
TGTAACAAACTTGAAAGATG+CGG - chr2_4:52722666-52722685 Msa0334400:CDS 30.0%
GTAAGGAATTATGAACAGTA+AGG - chr2_4:52722912-52722931 Msa0334400:intron 30.0%
! ACTTTACATGCCATTTATAC+TGG - chr2_4:52722963-52722982 Msa0334400:intron 30.0%
! GTAGCTTGTATACAAAAACT+AGG - chr2_4:52723038-52723057 Msa0334400:intron 30.0%
ATCTAGTCTAAGTCAAATTG+AGG + chr2_4:52723246-52723265 None:intergenic 30.0%
TTGACATGCTGTAACATAAA+GGG + chr2_4:52723366-52723385 None:intergenic 30.0%
TTTGACATGCTGTAACATAA+AGG + chr2_4:52723367-52723386 None:intergenic 30.0%
ACATCTATGCCATTAACATT+AGG + chr2_4:52723613-52723632 None:intergenic 30.0%
AAAGAAATGTACCAGTTCAA+GGG - chr2_4:52723707-52723726 Msa0334400:CDS 30.0%
TTATATAAATCCCCTTGAAC+TGG + chr2_4:52723721-52723740 None:intergenic 30.0%
AAACTCATGATTCACTTGTT+GGG + chr2_4:52723909-52723928 None:intergenic 30.0%
AAAATCATCTCTGTATCCAA+AGG + chr2_4:52724160-52724179 None:intergenic 30.0%
!!! TTTGTTGAGCATAGTTTTAG+TGG - chr2_4:52724182-52724201 Msa0334400:five_prime_UTR 30.0%
! TGGATATAGTTTTTGCACAA+TGG - chr2_4:52724202-52724221 Msa0334400:five_prime_UTR 30.0%
GATATAGGGCCCATATATAT+TGG + chr2_4:52718604-52718623 None:intergenic 35.0%
! TGTAGCAAACACATTTTCAG+AGG + chr2_4:52718652-52718671 None:intergenic 35.0%
AGTAGATCTCAATTCCCAAA+TGG - chr2_4:52718775-52718794 Msa0334400:three_prime_UTR 35.0%
ATGGTAAAGGTTTAAGCAAC+TGG - chr2_4:52718947-52718966 Msa0334400:CDS 35.0%
TGGTAAAGGTTTAAGCAACT+GGG - chr2_4:52718948-52718967 Msa0334400:CDS 35.0%
ACATTTCGGGAAAACTTACT+AGG + chr2_4:52719329-52719348 None:intergenic 35.0%
TGTTCATGAAATGTAACAGG+AGG - chr2_4:52719405-52719424 Msa0334400:intron 35.0%
GTTCATGAAATGTAACAGGA+GGG - chr2_4:52719406-52719425 Msa0334400:intron 35.0%
AATGTAACAGGAGGGATATA+TGG - chr2_4:52719414-52719433 Msa0334400:intron 35.0%
ATGTAACAGGAGGGATATAT+GGG - chr2_4:52719415-52719434 Msa0334400:intron 35.0%
TTGTAGAACATAACTCCACT+TGG + chr2_4:52719450-52719469 None:intergenic 35.0%
! ATAGACAATCTGCTACTTAG+AGG - chr2_4:52719477-52719496 Msa0334400:intron 35.0%
TGACAATTCATCATCAAGAC+TGG - chr2_4:52719615-52719634 Msa0334400:intron 35.0%
!! TATTATTGGTGTTGACCTGT+CGG - chr2_4:52719804-52719823 Msa0334400:intron 35.0%
AAGAGAATTCATCAGCTTGT+TGG + chr2_4:52719923-52719942 None:intergenic 35.0%
! GAAGTTTGTCACTTCTTACT+TGG - chr2_4:52719983-52720002 Msa0334400:intron 35.0%
!!! GTTTTAAGAGCTTTGGAGAT+AGG - chr2_4:52720044-52720063 Msa0334400:intron 35.0%
TTGGAGATAGGGTTAAGTAT+TGG - chr2_4:52720056-52720075 Msa0334400:intron 35.0%
TGGAGATAGGGTTAAGTATT+GGG - chr2_4:52720057-52720076 Msa0334400:intron 35.0%
! AACAAGATTTGGCTCATTGA+TGG + chr2_4:52720086-52720105 None:intergenic 35.0%
ATAACAGTTTCCAAAAGGAG+GGG + chr2_4:52720155-52720174 None:intergenic 35.0%
GTATAACAGTTTCCAAAAGG+AGG + chr2_4:52720157-52720176 None:intergenic 35.0%
CCAGTATAACAGTTTCCAAA+AGG + chr2_4:52720160-52720179 None:intergenic 35.0%
!! CCTTTTGGAAACTGTTATAC+TGG - chr2_4:52720157-52720176 Msa0334400:CDS 35.0%
TCACATTCTTCATCTCTAAG+AGG + chr2_4:52720405-52720424 None:intergenic 35.0%
! GAAAAGATAGTGTTGTTGCT+AGG + chr2_4:52720555-52720574 None:intergenic 35.0%
TAAACTAATAAGTGAGGGTG+TGG - chr2_4:52720686-52720705 Msa0334400:intron 35.0%
! AAACTAATAAGTGAGGGTGT+GGG - chr2_4:52720687-52720706 Msa0334400:intron 35.0%
!! TTACTAGATCCCCTAGTTTT+TGG - chr2_4:52720839-52720858 Msa0334400:CDS 35.0%
TCATTGGCATCAATAACTAC+GGG - chr2_4:52720954-52720973 Msa0334400:intron 35.0%
! AAAGGCTTTTTGCAAACAAC+TGG - chr2_4:52721037-52721056 Msa0334400:intron 35.0%
! AAGGCTTTTTGCAAACAACT+GGG - chr2_4:52721038-52721057 Msa0334400:intron 35.0%
CAAGTGTTAATGGAGAGAAA+AGG + chr2_4:52721533-52721552 None:intergenic 35.0%
GATAAGCAAGCAATATCTGT+TGG - chr2_4:52721648-52721667 Msa0334400:intron 35.0%
!!! GCAATATCTGTTGGTTTTGT+TGG - chr2_4:52721657-52721676 Msa0334400:intron 35.0%
ATCACGCAACCAAAGTAAAA+AGG + chr2_4:52722047-52722066 None:intergenic 35.0%
ATCTAAGAATAGCTCTTCCT+GGG + chr2_4:52722263-52722282 None:intergenic 35.0%
AATCTAAGAATAGCTCTTCC+TGG + chr2_4:52722264-52722283 None:intergenic 35.0%
TGACTAGCATATTACCTATG+TGG - chr2_4:52722300-52722319 Msa0334400:intron 35.0%
TAATATACGACCAGTGTAAG+TGG + chr2_4:52722342-52722361 None:intergenic 35.0%
! TAAAGAGCATACATGGGTTT+GGG + chr2_4:52722559-52722578 None:intergenic 35.0%
! ATAAAGAGCATACATGGGTT+TGG + chr2_4:52722560-52722579 None:intergenic 35.0%
TGTAGTTCAAGCATCTTGTA+AGG - chr2_4:52722895-52722914 Msa0334400:intron 35.0%
AGGAATTATGAACAGTAAGG+TGG - chr2_4:52722915-52722934 Msa0334400:intron 35.0%
ATACACAGATAACCAAATCC+AGG + chr2_4:52722989-52723008 None:intergenic 35.0%
ATGCCATATATCTTGTCATC+AGG - chr2_4:52723070-52723089 Msa0334400:intron 35.0%
TGCCATATATCTTGTCATCA+GGG - chr2_4:52723071-52723090 Msa0334400:intron 35.0%
AACCCTGATGACAAGATATA+TGG + chr2_4:52723076-52723095 None:intergenic 35.0%
! ATGATTTGCAAAGCTGAAGT+AGG + chr2_4:52723113-52723132 None:intergenic 35.0%
! TTGATGCGACTTTTACTCAA+TGG - chr2_4:52723461-52723480 Msa0334400:intron 35.0%
! TTTTACTCAATGGCTTTTCC+AGG - chr2_4:52723471-52723490 Msa0334400:intron 35.0%
! TTTACTCAATGGCTTTTCCA+GGG - chr2_4:52723472-52723491 Msa0334400:intron 35.0%
TAATGGCATAGATGTTGACA+AGG - chr2_4:52723618-52723637 Msa0334400:intron 35.0%
CAAAGAAATGTACCAGTTCA+AGG - chr2_4:52723706-52723725 Msa0334400:CDS 35.0%
AAGAAATGTACCAGTTCAAG+GGG - chr2_4:52723708-52723727 Msa0334400:CDS 35.0%
GAAACTCATGATTCACTTGT+TGG + chr2_4:52723910-52723929 None:intergenic 35.0%
TGAATCATGAGTTTCAGTTG+CGG - chr2_4:52723915-52723934 Msa0334400:intron 35.0%
TTAGCTGTTAGGGTTTATGT+TGG - chr2_4:52723940-52723959 Msa0334400:intron 35.0%
GACCTTTGTTAAAGAAGATG+CGG + chr2_4:52724017-52724036 None:intergenic 35.0%
AGACAAATGAAGTCCAGAAA+CGG + chr2_4:52724044-52724063 None:intergenic 35.0%
!! GTTATGGTTTGTTTATCACC+TGG - chr2_4:52724134-52724153 Msa0334400:CDS 35.0%
!! GCAGCTTTTGAAGATGGTAA+AGG - chr2_4:52718934-52718953 Msa0334400:CDS 40.0%
GATGTATTCAGTCACAAACC+AGG - chr2_4:52718970-52718989 Msa0334400:CDS 40.0%
TGTAACAGGAGGGATATATG+GGG - chr2_4:52719416-52719435 Msa0334400:intron 40.0%
TATGGGGACATAAATCCAAG+TGG - chr2_4:52719432-52719451 Msa0334400:intron 40.0%
TATCTTTGTTCCAGCTCTTG+TGG + chr2_4:52719641-52719660 None:intergenic 40.0%
CAAGAGCTGGAACAAAGATA+TGG - chr2_4:52719641-52719660 Msa0334400:intron 40.0%
TGGAACAAAGATATGGTGGT+TGG - chr2_4:52719648-52719667 Msa0334400:intron 40.0%
!! ACTTCTTACTTGGTGTTTGC+AGG - chr2_4:52719993-52720012 Msa0334400:intron 40.0%
CCAAAGTCGGAAACAAGATT+TGG + chr2_4:52720097-52720116 None:intergenic 40.0%
! CCAAATCTTGTTTCCGACTT+TGG - chr2_4:52720094-52720113 Msa0334400:CDS 40.0%
TCCTCTCATAAAGCCAAAGT+CGG + chr2_4:52720110-52720129 None:intergenic 40.0%
ATGAGAGGAACATATTCTCC+TGG - chr2_4:52720121-52720140 Msa0334400:CDS 40.0%
ATATTGTGCATAGCAAGGAG+AGG + chr2_4:52720199-52720218 None:intergenic 40.0%
GCAACATATTGTGCATAGCA+AGG + chr2_4:52720204-52720223 None:intergenic 40.0%
TATGTTGCTGTCACATGCTA+AGG - chr2_4:52720216-52720235 Msa0334400:intron 40.0%
ATGTTTATCCAGGCAAAGCA+AGG - chr2_4:52720339-52720358 Msa0334400:intron 40.0%
GGTATGTGCAACAATACCAA+TGG + chr2_4:52720370-52720389 None:intergenic 40.0%
TGATAGACAAGCTGCAAACA+GGG - chr2_4:52720422-52720441 Msa0334400:intron 40.0%
CAGAAGCAAAACTCTTCTGT+TGG + chr2_4:52720496-52720515 None:intergenic 40.0%
! CAACAGAAGAGTTTTGCTTC+TGG - chr2_4:52720494-52720513 Msa0334400:intron 40.0%
TGTTGCTAGGACCATTTGTA+TGG + chr2_4:52720542-52720561 None:intergenic 40.0%
ATGTCCGTCCCACATAAATT+TGG - chr2_4:52720646-52720665 Msa0334400:intron 40.0%
TGGTCCAAATTTATGTGGGA+CGG + chr2_4:52720653-52720672 None:intergenic 40.0%
AACATTTCCTGCTCTTCTGA+TGG - chr2_4:52720811-52720830 Msa0334400:intron 40.0%
! AGGGTACTCACCAAAAACTA+GGG + chr2_4:52720852-52720871 None:intergenic 40.0%
TTCTCCTTAGATGAGAACCT+AGG + chr2_4:52720908-52720927 None:intergenic 40.0%
TATTGATGCCAATGAAGTCC+AGG + chr2_4:52720949-52720968 None:intergenic 40.0%
CATTGGCATCAATAACTACG+GGG - chr2_4:52720955-52720974 Msa0334400:intron 40.0%
! AAAGCCTTTTATTGGACGAG+CGG + chr2_4:52721026-52721045 None:intergenic 40.0%
ATGAGAGATGGCATTCCAAT+TGG - chr2_4:52721061-52721080 Msa0334400:intron 40.0%
ATGAGTACCTGATCACCAAT+TGG + chr2_4:52721079-52721098 None:intergenic 40.0%
ATCGCACTGCAAAAAGAATG+AGG + chr2_4:52721311-52721330 None:intergenic 40.0%
TGCTTAGGGTTCACTTCTAT+CGG - chr2_4:52721596-52721615 Msa0334400:intron 40.0%
ACTGATGACTTCCCAACATT+TGG + chr2_4:52721687-52721706 None:intergenic 40.0%
CAGGAAATAAGAAGCAGTGA+AGG + chr2_4:52721750-52721769 None:intergenic 40.0%
GTGGCCGATTAATATGTCAT+AGG - chr2_4:52721863-52721882 Msa0334400:CDS 40.0%
!! ACTTTTGTTTCCCCTGGAAT+TGG + chr2_4:52721903-52721922 None:intergenic 40.0%
CTGTTTCAGAGTCATTGTTG+TGG + chr2_4:52721986-52722005 None:intergenic 40.0%
TGAAACAGATGTTGTGCTGA+AGG - chr2_4:52721998-52722017 Msa0334400:intron 40.0%
GAAACAGATGTTGTGCTGAA+GGG - chr2_4:52721999-52722018 Msa0334400:intron 40.0%
ATGTTTGCACATCCAGTCTT+GGG + chr2_4:52722098-52722117 None:intergenic 40.0%
TATGTTTGCACATCCAGTCT+TGG + chr2_4:52722099-52722118 None:intergenic 40.0%
! CGTTGTTGTTGTTGTTGTTG+TGG - chr2_4:52722615-52722634 Msa0334400:CDS 40.0%
AACAAACTTGAAAGATGCGG+CGG - chr2_4:52722669-52722688 Msa0334400:CDS 40.0%
GTTTCAAAACCTCGCCTATA+TGG + chr2_4:52722696-52722715 None:intergenic 40.0%
!!! GGTTTTGAAACGTGTGAAGA+AGG - chr2_4:52722705-52722724 Msa0334400:CDS 40.0%
CTACTATTCAACACGAAGTG+AGG + chr2_4:52722781-52722800 None:intergenic 40.0%
CAAATCCAGGCCAGTATAAA+TGG + chr2_4:52722976-52722995 None:intergenic 40.0%
! CATTTATACTGGCCTGGATT+TGG - chr2_4:52722974-52722993 Msa0334400:intron 40.0%
CTTCAGCTTTGCAAATCATC+TGG - chr2_4:52723114-52723133 Msa0334400:intron 40.0%
ATCATCTGGCAAACTCCTTA+AGG - chr2_4:52723128-52723147 Msa0334400:intron 40.0%
! TTCTTTAGCTCCATCACAGA+GGG + chr2_4:52723272-52723291 None:intergenic 40.0%
! TTTCTTTAGCTCCATCACAG+AGG + chr2_4:52723273-52723292 None:intergenic 40.0%
! GTGAAGTATCATCTTTGCTG+CGG + chr2_4:52723518-52723537 None:intergenic 40.0%
TCTGAGGAGCCTAATGTTAA+TGG - chr2_4:52723601-52723620 Msa0334400:intron 40.0%
TGGTACATTTCTTTGCTGCT+GGG + chr2_4:52723701-52723720 None:intergenic 40.0%
GCAGAAATAAGTTGCTCAGA+TGG + chr2_4:52723877-52723896 None:intergenic 40.0%
GAATCATGAGTTTCAGTTGC+GGG - chr2_4:52723916-52723935 Msa0334400:intron 40.0%
CTTTGTTAAAGAAGATGCGG+CGG + chr2_4:52724014-52724033 None:intergenic 40.0%
!! TGCTTTTGGGAATTCTGTTC+TGG - chr2_4:52724092-52724111 Msa0334400:CDS 40.0%
! TTTGTTTATCACCTGGCCTT+TGG - chr2_4:52724141-52724160 Msa0334400:CDS 40.0%
TTCCCAAATGGCTTCCTCTT+TGG - chr2_4:52718787-52718806 Msa0334400:three_prime_UTR 45.0%
CTCCAAAGAGGAAGCCATTT+GGG + chr2_4:52718792-52718811 None:intergenic 45.0%
AGCAAGCACTTCCTCTTATC+AGG - chr2_4:52718810-52718829 Msa0334400:three_prime_UTR 45.0%
!! GAAGGAGCAGCTTTTGAAGA+TGG - chr2_4:52718928-52718947 Msa0334400:CDS 45.0%
GTTATACCTAAATCCGGGCA+TGG - chr2_4:52719563-52719582 Msa0334400:intron 45.0%
GAGCTGGAACAAAGATATGG+TGG - chr2_4:52719644-52719663 Msa0334400:intron 45.0%
!! GTCGTGTCGGTTCTGAAATA+TGG + chr2_4:52719741-52719760 None:intergenic 45.0%
!! CAAATGTGTTGGTGTCGTGT+CGG + chr2_4:52719754-52719773 None:intergenic 45.0%
!! TCCGACTTTGGCTTTATGAG+AGG - chr2_4:52720106-52720125 Msa0334400:CDS 45.0%
TTTATCCAGGCAAAGCAAGG+TGG - chr2_4:52720342-52720361 Msa0334400:intron 45.0%
GTGATAGACAAGCTGCAAAC+AGG - chr2_4:52720421-52720440 Msa0334400:intron 45.0%
! AGGGCCTATGCTTTTGTCAT+AGG - chr2_4:52720441-52720460 Msa0334400:intron 45.0%
! CCAGCCTATGACAAAAGCAT+AGG + chr2_4:52720448-52720467 None:intergenic 45.0%
! CCTATGCTTTTGTCATAGGC+TGG - chr2_4:52720445-52720464 Msa0334400:intron 45.0%
GGGTACTCACCAAAAACTAG+GGG + chr2_4:52720851-52720870 None:intergenic 45.0%
! CAGGGTACTCACCAAAAACT+AGG + chr2_4:52720853-52720872 None:intergenic 45.0%
CTGAGATGCGCTCTATTCTT+GGG - chr2_4:52720873-52720892 Msa0334400:CDS 45.0%
TAGATGAGAACCTAGGCAAC+TGG + chr2_4:52720901-52720920 None:intergenic 45.0%
GTTGCCTAGGTTCTCATCTA+AGG - chr2_4:52720901-52720920 Msa0334400:CDS 45.0%
AAGGAGAAGAGTCTCCTAAG+AGG - chr2_4:52720920-52720939 Msa0334400:CDS 45.0%
CAAACAACTGGGATGAGAGA+TGG - chr2_4:52721049-52721068 Msa0334400:intron 45.0%
! TGGCATTCCAATTGGTGATC+AGG - chr2_4:52721069-52721088 Msa0334400:intron 45.0%
AGTGCGATCTAATTCCTGCT+TGG - chr2_4:52721323-52721342 Msa0334400:intron 45.0%
GTGCGATCTAATTCCTGCTT+GGG - chr2_4:52721324-52721343 Msa0334400:intron 45.0%
ATTCCTGCTTGGGCAACAAA+AGG - chr2_4:52721334-52721353 Msa0334400:intron 45.0%
!! TTAGCAGGTTGATTGACACG+TGG - chr2_4:52721844-52721863 Msa0334400:CDS 45.0%
TTCCAGGGGAAACAAAAGTC+TGG - chr2_4:52721904-52721923 Msa0334400:CDS 45.0%
TTGTTGTGGTAGACAACTCC+TGG + chr2_4:52721972-52721991 None:intergenic 45.0%
! TTTTGTTCGTCTCCCAAGAC+TGG - chr2_4:52722083-52722102 Msa0334400:intron 45.0%
GGATGTATCACAAGGCTGAT+TGG + chr2_4:52722180-52722199 None:intergenic 45.0%
!!! TTGTTTTGGGACTAAGTCCC+AGG - chr2_4:52722243-52722262 Msa0334400:intron 45.0%
GGGTAAAATGACAGCCACAT+AGG + chr2_4:52722317-52722336 None:intergenic 45.0%
! TTTTACCCAGCCACTTACAC+TGG - chr2_4:52722329-52722348 Msa0334400:intron 45.0%
! TTGTTCCTATTGTAGTGGGG+TGG - chr2_4:52722411-52722430 Msa0334400:CDS 45.0%
TATGACCACCCCACTACAAT+AGG + chr2_4:52722419-52722438 None:intergenic 45.0%
! ACATGCCATTTATACTGGCC+TGG - chr2_4:52722968-52722987 Msa0334400:intron 45.0%
TCATCTTTGCTGCGGTCATA+AGG + chr2_4:52723510-52723529 None:intergenic 45.0%
AACATTAGGCTCCTCAGACT+CGG + chr2_4:52723599-52723618 None:intergenic 45.0%
CTGGTACATTTCTTTGCTGC+TGG + chr2_4:52723702-52723721 None:intergenic 45.0%
TCTGTATAATCCCCAGTGTC+TGG + chr2_4:52723781-52723800 None:intergenic 45.0%
TGAAGATAGTGACGCATCTG+AGG - chr2_4:52723801-52723820 Msa0334400:intron 45.0%
TCAGATGGAACATCAGTGGA+TGG + chr2_4:52723862-52723881 None:intergenic 45.0%
TTGCTCAGATGGAACATCAG+TGG + chr2_4:52723866-52723885 None:intergenic 45.0%
!! GCAACTTATTTCTGCTGAGC+CGG - chr2_4:52723882-52723901 Msa0334400:CDS 45.0%
! CATGATTCACTTGTTGGGAC+CGG + chr2_4:52723904-52723923 None:intergenic 45.0%
AGTTGCGGGTTTAGCTGTTA+GGG - chr2_4:52723930-52723949 Msa0334400:intron 45.0%
TAAAGAAGATGCGGCGGAAA+TGG + chr2_4:52724008-52724027 None:intergenic 45.0%
CGCCGCATCTTCTTTAACAA+AGG - chr2_4:52724012-52724031 Msa0334400:CDS 45.0%
GCTCCAAAGAGGAAGCCATT+TGG + chr2_4:52718793-52718812 None:intergenic 50.0%
!! AGGAAGTGCTTGCTCCAAAG+AGG + chr2_4:52718804-52718823 None:intergenic 50.0%
TAGATCAAGCAAGCCATGCC+CGG + chr2_4:52719579-52719598 None:intergenic 50.0%
CGACACGACACCAACACATT+TGG - chr2_4:52719752-52719771 Msa0334400:intron 50.0%
!! TGACCTGTCGGTGTCGTATT+TGG - chr2_4:52719816-52719835 Msa0334400:intron 50.0%
AGACCAAATACGACACCGAC+AGG + chr2_4:52719822-52719841 None:intergenic 50.0%
AAAGGAGGGGAACAATGACC+AGG + chr2_4:52720142-52720161 None:intergenic 50.0%
! GGTCATTGTTCCCCTCCTTT+TGG - chr2_4:52720142-52720161 Msa0334400:CDS 50.0%
AGCAAGGAGAGGCTCAACAT+CGG + chr2_4:52720188-52720207 None:intergenic 50.0%
GCAAAGCAAGGTGGAACCAT+TGG - chr2_4:52720351-52720370 Msa0334400:intron 50.0%
TTCCTGCTCTTCTGATGGCA+AGG - chr2_4:52720816-52720835 Msa0334400:CDS 50.0%
AACCTTGCCATCAGAAGAGC+AGG + chr2_4:52720821-52720840 None:intergenic 50.0%
GAATAGAGCGCATCTCAGCA+GGG + chr2_4:52720871-52720890 None:intergenic 50.0%
AGAATAGAGCGCATCTCAGC+AGG + chr2_4:52720872-52720891 None:intergenic 50.0%
GCTGAGATGCGCTCTATTCT+TGG - chr2_4:52720872-52720891 Msa0334400:CDS 50.0%
TTCTTGGGAACCAGTTGCCT+AGG - chr2_4:52720888-52720907 Msa0334400:CDS 50.0%
GAAGCCGCTCGTCCAATAAA+AGG - chr2_4:52721019-52721038 Msa0334400:intron 50.0%
! CATCCTTTTGTTGCCCAAGC+AGG + chr2_4:52721340-52721359 None:intergenic 50.0%
CTGCTTGGGCAACAAAAGGA+TGG - chr2_4:52721338-52721357 Msa0334400:intron 50.0%
CTTGCATGGAATGCTAGCGT+TGG + chr2_4:52721388-52721407 None:intergenic 50.0%
TGCAAGGTTGCTCCAATTCC+AGG - chr2_4:52721888-52721907 Msa0334400:CDS 50.0%
GCAAGGTTGCTCCAATTCCA+GGG - chr2_4:52721889-52721908 Msa0334400:CDS 50.0%
CAAGGTTGCTCCAATTCCAG+GGG - chr2_4:52721890-52721909 Msa0334400:CDS 50.0%
!! TGCCAGACTTTTGTTTCCCC+TGG + chr2_4:52721909-52721928 None:intergenic 50.0%
AGATGTTGTGCTGAAGGGTG+TGG - chr2_4:52722004-52722023 Msa0334400:intron 50.0%
TACGACCAGTGTAAGTGGCT+GGG + chr2_4:52722337-52722356 None:intergenic 50.0%
ATACGACCAGTGTAAGTGGC+TGG + chr2_4:52722338-52722357 None:intergenic 50.0%
AAAGATGCGGCGGACCATAT+AGG - chr2_4:52722679-52722698 Msa0334400:CDS 50.0%
CAACACGAAGTGAGGAGAGA+AGG + chr2_4:52722773-52722792 None:intergenic 50.0%
ACTAGATGTGCCCTCTGTGA+TGG - chr2_4:52723259-52723278 Msa0334400:intron 50.0%
! ACTCAATGGCTTTTCCAGGG+TGG - chr2_4:52723475-52723494 Msa0334400:intron 50.0%
TTTGCTGCGGTCATAAGGTC+AGG + chr2_4:52723505-52723524 None:intergenic 50.0%
CAAGGCAGTTGACCATAACC+AGG - chr2_4:52723636-52723655 Msa0334400:intron 50.0%
CTTTAATGGCAGCAGATGCC+TGG + chr2_4:52723657-52723676 None:intergenic 50.0%
CTGACCAACTTCCAGACACT+GGG - chr2_4:52723767-52723786 Msa0334400:intron 50.0%
TGACCAACTTCCAGACACTG+GGG - chr2_4:52723768-52723787 Msa0334400:intron 50.0%
AATCCCCAGTGTCTGGAAGT+TGG + chr2_4:52723774-52723793 None:intergenic 50.0%
AGATAGTGACGCATCTGAGG+AGG - chr2_4:52723804-52723823 Msa0334400:intron 50.0%
TGGATGGATCCTGCTCAGAT+GGG + chr2_4:52723846-52723865 None:intergenic 50.0%
CAGTTGCGGGTTTAGCTGTT+AGG - chr2_4:52723929-52723948 Msa0334400:intron 50.0%
ACAAAGGTCAGCTCCGTTTC+TGG - chr2_4:52724028-52724047 Msa0334400:CDS 50.0%
CATCTCTGTATCCAAAGGCC+AGG + chr2_4:52724155-52724174 None:intergenic 50.0%
AGCAAGCCATGCCCGGATTT+AGG + chr2_4:52719572-52719591 None:intergenic 55.0%
!! GGGCATGGCTTGCTTGATCT+AGG - chr2_4:52719578-52719597 Msa0334400:intron 55.0%
! TCAAGACTGGCCACAAGAGC+TGG - chr2_4:52719628-52719647 Msa0334400:intron 55.0%
TGGTTCCACCTTGCTTTGCC+TGG + chr2_4:52720350-52720369 None:intergenic 55.0%
TGAAGTCCAGGCTGCCTCTT+AGG + chr2_4:52720937-52720956 None:intergenic 55.0%
AGAGGCAGCCTGGACTTCAT+TGG - chr2_4:52720938-52720957 Msa0334400:intron 55.0%
CTACGGGGCTCTCTATGTCA+AGG - chr2_4:52720970-52720989 Msa0334400:intron 55.0%
CTTCGAGAGGGCAAGTAGAG+AGG + chr2_4:52721003-52721022 None:intergenic 55.0%
! GTTGTGCTGAAGGGTGTGGT+AGG - chr2_4:52722008-52722027 Msa0334400:intron 55.0%
GAGCATACATGGGTTTGGGC+TGG + chr2_4:52722555-52722574 None:intergenic 55.0%
TAAGGTCAGGTTCACCACCC+TGG + chr2_4:52723492-52723511 None:intergenic 55.0%
CGCGGAGGAGGGACAAAAAA+GGG + chr2_4:52723562-52723581 None:intergenic 55.0%
TCGCGGAGGAGGGACAAAAA+AGG + chr2_4:52723563-52723582 None:intergenic 55.0%
TGGCAGCAGATGCCTGGTTA+TGG + chr2_4:52723651-52723670 None:intergenic 55.0%
GCTGACCAACTTCCAGACAC+TGG - chr2_4:52723766-52723785 Msa0334400:intron 55.0%
TGAGGAGGATCCATCCACTG+AGG - chr2_4:52723819-52723838 Msa0334400:intron 55.0%
TCAGATGGGACCTCAGTGGA+TGG + chr2_4:52723832-52723851 None:intergenic 55.0%
GTGGATGGATCCTGCTCAGA+TGG + chr2_4:52723847-52723866 None:intergenic 55.0%
GAGTCTCCTAAGAGGCAGCC+TGG - chr2_4:52720928-52720947 Msa0334400:CDS 60.0%
TTGGACGAGCGGCTTCGAGA+GGG + chr2_4:52721015-52721034 None:intergenic 60.0%
ATTGGACGAGCGGCTTCGAG+AGG + chr2_4:52721016-52721035 None:intergenic 60.0%
! TTTTGTCCCTCCTCCGCGAC+AGG - chr2_4:52723564-52723583 Msa0334400:CDS 60.0%
! TCGGACAAGGCATCCTGTCG+CGG + chr2_4:52723580-52723599 None:intergenic 60.0%
GGATGCCTTGTCCGAGTCTG+AGG - chr2_4:52723585-52723604 Msa0334400:intron 60.0%
AGGCTCCTCAGACTCGGACA+AGG + chr2_4:52723593-52723612 None:intergenic 60.0%
CTGCTCAGATGGGACCTCAG+TGG + chr2_4:52723836-52723855 None:intergenic 60.0%
CACTGAGGTCCCATCTGAGC+AGG - chr2_4:52723834-52723853 Msa0334400:intron 60.0%
TGCGGCGGACCATATAGGCG+AGG - chr2_4:52722684-52722703 Msa0334400:CDS 65.0%
AGGCATCCTGTCGCGGAGGA+GGG + chr2_4:52723573-52723592 None:intergenic 65.0%
! AAGGCATCCTGTCGCGGAGG+AGG + chr2_4:52723574-52723593 None:intergenic 65.0%
! GACAAGGCATCCTGTCGCGG+AGG + chr2_4:52723577-52723596 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52718538 52724301 52718538 ID=Msa0334400;Name=Msa0334400
chr2_4 mRNA 52718538 52724301 52718538 ID=Msa0334400-mRNA-1;Parent=Msa0334400;Name=Msa0334400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=141|0.92|0.86|1|1|1|15|377|701
chr2_4 exon 52718538 52719346 52718538 ID=Msa0334400-mRNA-1:exon:15948;Parent=Msa0334400-mRNA-1
chr2_4 exon 52719690 52719747 52719690 ID=Msa0334400-mRNA-1:exon:15947;Parent=Msa0334400-mRNA-1
chr2_4 exon 52720078 52720178 52720078 ID=Msa0334400-mRNA-1:exon:15946;Parent=Msa0334400-mRNA-1
chr2_4 exon 52720814 52720954 52720814 ID=Msa0334400-mRNA-1:exon:15945;Parent=Msa0334400-mRNA-1
chr2_4 exon 52721108 52721236 52721108 ID=Msa0334400-mRNA-1:exon:15944;Parent=Msa0334400-mRNA-1
chr2_4 exon 52721410 52721514 52721410 ID=Msa0334400-mRNA-1:exon:15943;Parent=Msa0334400-mRNA-1
chr2_4 exon 52721749 52722001 52721749 ID=Msa0334400-mRNA-1:exon:15942;Parent=Msa0334400-mRNA-1
chr2_4 exon 52722373 52722488 52722373 ID=Msa0334400-mRNA-1:exon:15941;Parent=Msa0334400-mRNA-1
chr2_4 exon 52722572 52722824 52722572 ID=Msa0334400-mRNA-1:exon:15940;Parent=Msa0334400-mRNA-1
chr2_4 exon 52723152 52723239 52723152 ID=Msa0334400-mRNA-1:exon:15939;Parent=Msa0334400-mRNA-1
chr2_4 exon 52723341 52723415 52723341 ID=Msa0334400-mRNA-1:exon:15938;Parent=Msa0334400-mRNA-1
chr2_4 exon 52723510 52723585 52723510 ID=Msa0334400-mRNA-1:exon:15937;Parent=Msa0334400-mRNA-1
chr2_4 exon 52723697 52723755 52723697 ID=Msa0334400-mRNA-1:exon:15936;Parent=Msa0334400-mRNA-1
chr2_4 exon 52723848 52723914 52723848 ID=Msa0334400-mRNA-1:exon:15935;Parent=Msa0334400-mRNA-1
chr2_4 exon 52724008 52724301 52724008 ID=Msa0334400-mRNA-1:exon:15934;Parent=Msa0334400-mRNA-1
chr2_4 five_prime_UTR 52724161 52724301 52724161 ID=Msa0334400-mRNA-1:five_prime_utr;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52724008 52724160 52724008 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52723848 52723914 52723848 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52723697 52723755 52723697 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52723510 52723585 52723510 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52723341 52723415 52723341 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52723152 52723239 52723152 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52722572 52722824 52722572 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52722373 52722488 52722373 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52721749 52722001 52721749 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52721410 52721514 52721410 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52721108 52721236 52721108 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52720814 52720954 52720814 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52720078 52720178 52720078 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52719690 52719747 52719690 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 CDS 52718915 52719346 52718915 ID=Msa0334400-mRNA-1:cds;Parent=Msa0334400-mRNA-1
chr2_4 three_prime_UTR 52718538 52718914 52718538 ID=Msa0334400-mRNA-1:three_prime_utr;Parent=Msa0334400-mRNA-1
Gene Sequence

>Msa0334400

ATGAAAATGCAAAAATGGTTTATGCATGTTGTGTTTACACTGCTTTGCTCTTCTCTTTTACATGTTCAAAGTTCTCATGAAGTTGATGATGAAATCAGTAGATCTCAATTCCCAAATGGCTTCCTCTTTGGAGCAAGCACTTCCTCTTATCAGATTGAAGGAGCAGCTTTTGAAGATGGTAAAGGTTTAAGCAACTGGGATGTATTCAGTCACAAACCAGGAATGATAAACAATGATGAGAATGGTGATATAGCAAATGATCATTATCATCACTATTTGGAAGATATCAAATTGATGTCATCACTTGGGATAAATGTATATAGATTTTCAATTTCATGGTCTAGGATTCTACCTAGAGGGATATATGGGGACATAAATCCAAGTGGAGTTATGTTCTACAACAATCTTATAGACAATCTGCTACTTAGAGGAATTGAGCCATTTGTGACAATTCATCATCAAGACTGGCCACAAGAGCTGGAACAAAGATATGGTGGTTGGCTTAGTCCCCTAATTCAGAGAGATTTTGTTCATTTTTCTGAAATTTGTTTTAAGAGCTTTGGAGATAGGGTTAAGTATTGGGTCACCATCAATGAGCCAAATCTTGTTTCCGACTTTGGCTTTATGAGAGGAACATATTCTCCTGGTCATTGTTCCCCTCCTTTTGGAAACTGTTATACTGGTAACTCCGATGTTGAGCCTCTCCTTGCTATGCACAATATGTTGCTGTCACATGCTAAGGCTGTTGATTTATACCGCAAACAATATCAGGCAAAGCAAGGTGGAACCATTGGTATTGTTGCACATACCTTTATGTATGAACCTCTTAGAGATGAAGAATGTGATAGACAAGCTGCAAACAGGGCCTATGCTTTTGTCATAGGCTGGTTACTAGATCCCCTAGTTTTTGGTGAGTACCCTGCTGAGATGCGCTCTATTCTTGGGAACCAGTTGCCTAGGTTCTCATCTAAGGAGAAGAGTCTCCTAAGAGGCAGCCTGGACTTCATTGGCATCAATAACTACGGGGCTCTCTATGTCAAGGATTGCTACCTCTCTACTTGCCCTCTCGAAGCCGCTCGTCCAATAAAAGGCTTTTTGCAAACAACTGGGATGAGAGATGGCATTCCAATTGGTGATCAGTGCGATCTAATTCCTGCTTGGGCAACAAAAGGATGGCTTAGAGTTTTGTCAAAAGAATATCCAACGCTAGCATTCCATGCAAGTATTAATAAGTCCTTTGGAAAGGGTTCACTTCTATCGGTTCTAAGACAATTTGCAAGATTGAAAAGTGATAAGCAAGCAATATCTGTTGGTTTTGTTGGATATCCAAATGTTGGGAAGTCATCAGTGATCAACACATTGCGTACAAAGAATGTTTGCAAGGTTGCTCCAATTCCAGGGGAAACAAAAGTCTGGCAGTATATTACCCTTACAAAGAGGATCTTTTTGATTGATTGTCCAGGAGTTGTCTACCACAACAATGACTCTGAAACAGATGTTGTGCTGAAGGGTGTGGTTCGTGTAACAAACTTGAAAGATGCGGCGGACCATATAGGCGAGGTTTTGAAACGTGTGAAGAAGGAGCACTTGACAAGAGCTTATAAAATAAAAGAATGGGTTGATGAAAATGACTTCCTACTTCAGCTTTGCAAATCATCTGGCAAACTCCTTAAGGGTGGTGAACCTGACCTTATGACCGCAGCAAAGATGATACTTCACGATTGGCAGAGGGGTAAAATTCCCTTTTTTGTCCCTCCTCCGCGACAGGATGCCTTGTCCGAGTCTGAGGAGCCTAATGTTAATGGCATAGATGTTGACAAGGCAGTTGACCATAACCAGGCATCTGCTGCCATTAAAGCTATTGCAAATGTTCTTTCGTCCCAGCAGCAAAGAAATGTACCAGTTCAAGGGGATTTATATAACGAGAATGAGCTGAATGAAGAAACTGCTGACCAACTTCCAGACACTGGGGATTATACAGATGAAGATAGTGACGCATCTGAGGAGGATCCATCCACTGAGGTCCCATCTGAGCAGGATCCATCCACTGATGTTCCATCTGAGCAACTTATTTCTGCTGAGCCGGTCCCAACAAGTGAATCATGA
Protein sequence

>Msa0334400

MKMQKWFMHVVFTLLCSSLLHVQSSHEVDDEISRSQFPNGFLFGASTSSYQIEGAAFEDGKGLSNWDVFSHKPGMINNDENGDIANDHYHHYLEDIKLMSSLGINVYRFSISWSRILPRGIYGDINPSGVMFYNNLIDNLLLRGIEPFVTIHHQDWPQELEQRYGGWLSPLIQRDFVHFSEICFKSFGDRVKYWVTINEPNLVSDFGFMRGTYSPGHCSPPFGNCYTGNSDVEPLLAMHNMLLSHAKAVDLYRKQYQAKQGGTIGIVAHTFMYEPLRDEECDRQAANRAYAFVIGWLLDPLVFGEYPAEMRSILGNQLPRFSSKEKSLLRGSLDFIGINNYGALYVKDCYLSTCPLEAARPIKGFLQTTGMRDGIPIGDQCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYHNNDSETDVVLKGVVRVTNLKDAADHIGEVLKRVKKEHLTRAYKIKEWVDENDFLLQLCKSSGKLLKGGEPDLMTAAKMILHDWQRGKIPFFVPPPRQDALSESEEPNVNGIDVDKAVDHNQASAAIKAIANVLSSQQQRNVPVQGDLYNENELNEETADQLPDTGDYTDEDSDASEEDPSTEVPSEQDPSTDVPSEQLISAEPVPTSES*