AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072420 MtrunA17_Chr1g0179301 98.827 341 4 0 1 341 1 341 0.0 699
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072420 AT3G23620.1 71.246 313 88 2 28 340 3 313 3.85e-159 448

Find 98 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGATTGCAGTCTCTTTC+TGG 0.136562 1_2:+45348090 Msa0072420:CDS
TGAGGGCGAGTTTGCCCTTA+TGG 0.218905 1_2:-45347790 None:intergenic
GTAATGATGGTTACGAGTTT+TGG 0.263003 1_2:-45347824 None:intergenic
ACATTATGCTTACAATTAAA+TGG 0.265469 1_2:-45351583 None:intergenic
ATTAATGAACGTATTAAAAT+AGG 0.271829 1_2:-45351677 None:intergenic
ATGTTCTGATATACTTTATA+AGG 0.271920 1_2:-45351761 None:intergenic
ACTTCTACCAATTCCATTCT+TGG 0.274683 1_2:-45350929 None:intergenic
GTTTCTGCTGCTTGGCTTCT+CGG 0.282208 1_2:-45351357 None:intergenic
CATTTCCAATCTTTCCTTGT+AGG 0.311357 1_2:-45351165 None:intergenic
CAAAGAAAAGACCTTCGTTT+TGG 0.313563 1_2:-45347652 None:intergenic
AGTTGGTCCTTCCATGGATA+TGG 0.326164 1_2:+45350949 Msa0072420:CDS
GTTCAAAACCGCACTCGTTT+TGG 0.326227 1_2:-45347945 None:intergenic
TCCCCAATGAAAGCCATAAA+AGG 0.334452 1_2:-45350634 None:intergenic
AGCTGGTGGTGAAACCTCTT+TGG 0.334516 1_2:+45348051 Msa0072420:CDS
GAGGGCGAGTTTGCCCTTAT+GGG 0.337355 1_2:-45347789 None:intergenic
AAGGGACAAGCCAAAGAAAA+AGG 0.337552 1_2:+45351030 Msa0072420:CDS
AAAGGCTTTGATCCTTCCTT+TGG 0.354826 1_2:-45350616 None:intergenic
AAGAAAACGTTGTTGCTTCA+TGG 0.355781 1_2:+45347920 Msa0072420:CDS
GTGGAGAATTTAAATCTTGC+CGG 0.361028 1_2:+45350812 Msa0072420:CDS
ACTCCCATGTTTCTGCTGCT+TGG 0.361871 1_2:-45351365 None:intergenic
CTCCCGAGAACAAGGTTATT+AGG 0.367924 1_2:-45350502 None:intergenic
AATTGTTTAGATTGGAGAAA+TGG 0.368193 1_2:+45351297 Msa0072420:intron
TTCACTCCTTTCGATTTATT+AGG 0.370859 1_2:-45351325 None:intergenic
ATAGGAGAAGAATGTCAAAA+AGG 0.389857 1_2:+45351138 Msa0072420:intron
TCCTTCATCACACTTTCATT+AGG 0.397326 1_2:-45350992 None:intergenic
CTTCTACCAATTCCATTCTT+GGG 0.402072 1_2:-45350928 None:intergenic
GTCCCTCTTACCTTCTGATC+TGG 0.404383 1_2:-45351196 None:intergenic
ATTTCCAATCTTTCCTTGTA+GGG 0.414052 1_2:-45351164 None:intergenic
TACTGCCCTGTCTCCAACTA+AGG 0.416338 1_2:+45350856 Msa0072420:CDS
GATCCCCTACAAGGAAAGAT+TGG 0.422525 1_2:+45351160 Msa0072420:CDS
AACAAAACTCATTCCCTGTA+AGG 0.441975 1_2:-45351559 None:intergenic
AGTTGTCCCAAGAATGGAAT+TGG 0.444927 1_2:+45350922 Msa0072420:CDS
GGATAAAGGTCGTCTAAATC+AGG 0.447679 1_2:-45351621 None:intergenic
TTCATTAATTTATGTTCAGA+TGG 0.447875 1_2:+45351691 Msa0072420:three_prime_UTR
AGACCTAATAACCTTGTTCT+CGG 0.458179 1_2:+45350499 Msa0072420:CDS
ACTAATCCACTCGAGGATAA+AGG 0.460298 1_2:-45351635 None:intergenic
TTCAGATGGGTATAGTTTCA+AGG 0.466774 1_2:+45351705 Msa0072420:three_prime_UTR
CAGAACCGCCACAACCCATA+AGG 0.468050 1_2:+45347775 Msa0072420:CDS
TCAGATTTATCATTTGAAGA+AGG 0.468460 1_2:+45347979 Msa0072420:CDS
CTTTGCTGCCTTCTTCGCTA+TGG 0.473109 1_2:+45347670 Msa0072420:exon
TCTGAAACTGTGCGGTGTGA+GGG 0.475218 1_2:-45347694 None:intergenic
GAGTTTGCCCTTATGGGTTG+TGG 0.476342 1_2:-45347783 None:intergenic
TGGCACAGTTGTCCCAAGAA+TGG 0.482338 1_2:+45350916 Msa0072420:CDS
TTCATCACACTTTCATTAGG+AGG 0.486397 1_2:-45350989 None:intergenic
TTTATGGCTTTCATTGGGGA+AGG 0.487396 1_2:+45350637 Msa0072420:CDS
CAAAACTCATTCCCTGTAAG+GGG 0.492556 1_2:-45351557 None:intergenic
TCCTAATGAAAGTGTGATGA+AGG 0.493736 1_2:+45350991 Msa0072420:CDS
GAAGCCAAGCAGCAGAAACA+TGG 0.494056 1_2:+45351361 Msa0072420:CDS
GTTTCACCACCAGCTTCAAA+AGG 0.496777 1_2:-45348043 None:intergenic
GTGAGGGGCCATAGCGAAGA+AGG 0.497035 1_2:-45347678 None:intergenic
TTCTGAAACTGTGCGGTGTG+AGG 0.506916 1_2:-45347695 None:intergenic
TTCATGATCAAAAGACAGGC+AGG 0.510453 1_2:-45351464 None:intergenic
GTCTATGATCTGATAGAAGT+TGG 0.514759 1_2:+45350541 Msa0072420:CDS
GACAGGCAGGGAAAGACAAT+AGG 0.520590 1_2:-45351451 None:intergenic
TCATTAATTTATGTTCAGAT+GGG 0.524102 1_2:+45351692 Msa0072420:three_prime_UTR
ATAAATCGAAAGGAGTGAAG+AGG 0.524729 1_2:+45351329 Msa0072420:CDS
CATACATTCTCCCGAGAACA+AGG 0.525815 1_2:-45350510 None:intergenic
GACCTAATAACCTTGTTCTC+GGG 0.526089 1_2:+45350500 Msa0072420:CDS
AAAACACCTTAGTTGGAGAC+AGG 0.528374 1_2:-45350862 None:intergenic
TATAATTTGATCTACTACAA+TGG 0.529365 1_2:-45351492 None:intergenic
GGTAGAAGTTGGTCCTTCCA+TGG 0.530363 1_2:+45350943 Msa0072420:CDS
AGAACCGCCACAACCCATAA+GGG 0.532404 1_2:+45347776 Msa0072420:CDS
AGAATGGAATTGGTAGAAGT+TGG 0.538211 1_2:+45350932 Msa0072420:CDS
TCGCTTCATGATCAAAAGAC+AGG 0.548955 1_2:-45351468 None:intergenic
TTTCATTAGGAGGACGATGC+CGG 0.551349 1_2:-45350979 None:intergenic
GAATTTAAATCTTGCCGGAG+TGG 0.559897 1_2:+45350817 Msa0072420:CDS
ACAAAACTCATTCCCTGTAA+GGG 0.559993 1_2:-45351558 None:intergenic
TTTCCAATCTTTCCTTGTAG+GGG 0.560156 1_2:-45351163 None:intergenic
CCGGCGAATAACCATATCCA+TGG 0.560635 1_2:-45350960 None:intergenic
TGATAAGAAAATAGCTCCAA+AGG 0.560881 1_2:+45350600 Msa0072420:CDS
AGGAAGCCATGAAAACTTCA+AGG 0.562762 1_2:+45351011 Msa0072420:CDS
TAGATCAAATTATAATACAT+TGG 0.565915 1_2:+45351501 Msa0072420:three_prime_UTR
CCATGGATATGGTTATTCGC+CGG 0.570411 1_2:+45350960 Msa0072420:CDS
TGTTTATATTCCAGATCAGA+AGG 0.574269 1_2:+45351186 Msa0072420:CDS
AAGCCAAGCAGCAGAAACAT+GGG 0.578219 1_2:+45351362 Msa0072420:CDS
AAGAAAATAGCTCCAAAGGA+AGG 0.585681 1_2:+45350604 Msa0072420:CDS
TAAATCGAAAGGAGTGAAGA+GGG 0.586006 1_2:+45351330 Msa0072420:CDS
GAACGAACTTAAACAGCTGA+AGG 0.586198 1_2:+45350672 Msa0072420:CDS
CTGAAACTGTGCGGTGTGAG+GGG 0.595983 1_2:-45347693 None:intergenic
TACATATGCACGGTCCACTC+CGG 0.600615 1_2:-45350831 None:intergenic
GGCGGTTCTGAATTCAGAGA+AGG 0.605630 1_2:-45347762 None:intergenic
CTTCTATCAGATCATAGACA+TGG 0.608305 1_2:-45350537 None:intergenic
AGACGACCTTTATCCTCGAG+TGG 0.616955 1_2:+45351629 Msa0072420:three_prime_UTR
CGAATAACCATATCCATGGA+AGG 0.616987 1_2:-45350956 None:intergenic
TTTCAGAACCGCCACAGTCA+AGG 0.617056 1_2:+45347710 Msa0072420:CDS
GGAAGCCATGAAAACTTCAA+GGG 0.623284 1_2:+45351012 Msa0072420:CDS
TTTGCCCTTATGGGTTGTGG+CGG 0.625672 1_2:-45347780 None:intergenic
TCATGATCAAAAGACAGGCA+GGG 0.651541 1_2:-45351463 None:intergenic
TCATGGAACCAAAACGAGTG+CGG 0.653161 1_2:+45347937 Msa0072420:CDS
AAACACCTTAGTTGGAGACA+GGG 0.662381 1_2:-45350861 None:intergenic
ACCCTAAAACACCAAAACGA+AGG 0.664314 1_2:+45347641 None:intergenic
AAAACTCATTCCCTGTAAGG+GGG 0.666511 1_2:-45351556 None:intergenic
GGGCAGTACATACATATGCA+CGG 0.685032 1_2:-45350841 None:intergenic
CAGAACCGCCACAGTCAAGG+TGG 0.688333 1_2:+45347713 Msa0072420:CDS
ACTACTCACTAATCCACTCG+AGG 0.689211 1_2:-45351642 None:intergenic
TGTGTGCGCCACCTTGACTG+TGG 0.699752 1_2:-45347721 None:intergenic
GTGGCGGTTCTGAAACTGTG+CGG 0.717997 1_2:-45347702 None:intergenic
GTGCGCCACCTTGACTGTGG+CGG 0.725218 1_2:-45347718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATAATATAATATTTT+AGG - chr1_2:45351428-45351447 None:intergenic 0.0%
!! TATGAAAATAAATTGAAAAA+AGG + chr1_2:45350048-45350067 Msa0072420:intron 10.0%
!! ATTGAGAAAAATAAAATAAA+AGG - chr1_2:45350277-45350296 None:intergenic 10.0%
!!! TTTTTATGGTTTTATGATTA+AGG + chr1_2:45348198-45348217 Msa0072420:intron 15.0%
!! AACTTATAGCTTATATAAAA+TGG - chr1_2:45348458-45348477 None:intergenic 15.0%
!! TTTAGCTATAAAAATAGTTT+AGG - chr1_2:45348668-45348687 None:intergenic 15.0%
!!! TTTACTTTTTACCATTTTTA+TGG + chr1_2:45348864-45348883 Msa0072420:intron 15.0%
!! TTAAAAAAGTTAGGAATTTA+TGG + chr1_2:45348894-45348913 Msa0072420:intron 15.0%
!! TATTATTAAGTCATTACAAT+TGG + chr1_2:45349484-45349503 Msa0072420:intron 15.0%
!!! CAATTATTTTTTAGATTTAG+AGG - chr1_2:45350352-45350371 None:intergenic 15.0%
!! TAGATCAAATTATAATACAT+TGG + chr1_2:45351501-45351520 Msa0072420:three_prime_UTR 15.0%
!! ATTAATGAACGTATTAAAAT+AGG - chr1_2:45351680-45351699 None:intergenic 15.0%
!! TATGATTAAGGAATTAGAAT+TGG + chr1_2:45348210-45348229 Msa0072420:intron 20.0%
!!! GTACATGTTTTAAAAAAGTT+AGG + chr1_2:45348322-45348341 Msa0072420:intron 20.0%
!!! TTTGAAAATGAGTTGAAAAA+AGG + chr1_2:45348754-45348773 Msa0072420:intron 20.0%
!!! TTGAAAATGAGTTGAAAAAA+GGG + chr1_2:45348755-45348774 Msa0072420:intron 20.0%
!!! ACATTTTTAGTGAATTACAT+AGG + chr1_2:45348836-45348855 Msa0072420:intron 20.0%
!! TTAAAACAAGTCCATAAAAA+TGG - chr1_2:45348878-45348897 None:intergenic 20.0%
!! ACTTATAGCTTATATGAAAA+TGG - chr1_2:45349109-45349128 None:intergenic 20.0%
!! CTATTATTCAGACATTTATT+TGG + chr1_2:45349419-45349438 Msa0072420:intron 20.0%
!! TTAACAAAGGTTCTTAAAAA+TGG - chr1_2:45349587-45349606 None:intergenic 20.0%
!! AACCTTTGTTAAAATAAGTT+AGG + chr1_2:45349595-45349614 Msa0072420:intron 20.0%
!!! TTCCTAACTTATTTTAACAA+AGG - chr1_2:45349600-45349619 None:intergenic 20.0%
!!! AACTTTGTTTTTAAGCTATT+TGG + chr1_2:45349624-45349643 Msa0072420:intron 20.0%
!!! AATGTTTTTATAAGCTATGT+TGG + chr1_2:45350019-45350038 Msa0072420:intron 20.0%
!!! TTATTTTTTAGATTTAGAGG+AGG - chr1_2:45350349-45350368 None:intergenic 20.0%
!!! TCGATTTTAATTGTTTAGAT+TGG + chr1_2:45351289-45351308 Msa0072420:intron 20.0%
!! TATAATTTGATCTACTACAA+TGG - chr1_2:45351495-45351514 None:intergenic 20.0%
!! ACATTATGCTTACAATTAAA+TGG - chr1_2:45351586-45351605 None:intergenic 20.0%
!! TTCATTAATTTATGTTCAGA+TGG + chr1_2:45351691-45351710 Msa0072420:three_prime_UTR 20.0%
!! TCATTAATTTATGTTCAGAT+GGG + chr1_2:45351692-45351711 Msa0072420:three_prime_UTR 20.0%
!!! ATGTTCTGATATATTTTGTT+TGG - chr1_2:45351738-45351757 None:intergenic 20.0%
!! ATGTTCTGATATACTTTATA+AGG - chr1_2:45351764-45351783 None:intergenic 20.0%
! ATGAAAAGATGAAGTAATGA+TGG - chr1_2:45347840-45347859 None:intergenic 25.0%
! AATCATGGTGTTTGATTAAA+TGG - chr1_2:45347864-45347883 None:intergenic 25.0%
! AAACACAAAAACATGAATCA+TGG - chr1_2:45347879-45347898 None:intergenic 25.0%
!!! TGTTTTTGTGTTTTTGTTAC+AGG + chr1_2:45347886-45347905 Msa0072420:intron 25.0%
! TCAGATTTATCATTTGAAGA+AGG + chr1_2:45347979-45347998 Msa0072420:CDS 25.0%
!!! AATATTAAACCTTTTGAAGC+TGG + chr1_2:45348034-45348053 Msa0072420:CDS 25.0%
!!! TGAGTTTGTTTTTAAGGTTT+TGG + chr1_2:45348145-45348164 Msa0072420:intron 25.0%
!!! TTTGCTTTGCTTTGTTTTTA+TGG + chr1_2:45348184-45348203 Msa0072420:intron 25.0%
!!! TTAAGTTGATAATCCAAACA+GGG - chr1_2:45348367-45348386 None:intergenic 25.0%
!!! ATTAAGTTGATAATCCAAAC+AGG - chr1_2:45348368-45348387 None:intergenic 25.0%
!!! GTTGTTTTCATTAGCTATTT+TGG + chr1_2:45348475-45348494 Msa0072420:intron 25.0%
!! ATTGGTAGTAGATAAGTTTA+AGG + chr1_2:45348573-45348592 Msa0072420:intron 25.0%
!! TTGGTAGTAGATAAGTTTAA+GGG + chr1_2:45348574-45348593 Msa0072420:intron 25.0%
!!! GTTGTTTTTATAAGCTACAT+TGG + chr1_2:45348726-45348745 Msa0072420:intron 25.0%
!! TGAAAAAAGGGTATGAAAAT+TGG + chr1_2:45348767-45348786 Msa0072420:intron 25.0%
!!! GGACTTGTTTTAAAAAAGTT+AGG + chr1_2:45348885-45348904 Msa0072420:intron 25.0%
!!! GGACTTGTTTTAAAAAAGTT+AGG + chr1_2:45348885-45348904 Msa0072420:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr1_2:45349003-45349022 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr1_2:45349004-45349023 None:intergenic 25.0%
!!! GTTCTTTCTAAAATAGCTAA+TGG - chr1_2:45349137-45349156 None:intergenic 25.0%
! AATAGAAAACAACAAGTTTC+GGG - chr1_2:45349398-45349417 None:intergenic 25.0%
! CAATAGAAAACAACAAGTTT+CGG - chr1_2:45349399-45349418 None:intergenic 25.0%
! TTCTTAAAAATGGTGAAAGT+AGG - chr1_2:45349577-45349596 None:intergenic 25.0%
!! CCTATTGACATATATTTTGT+GGG - chr1_2:45350120-45350139 None:intergenic 25.0%
!! ACCTATTGACATATATTTTG+TGG - chr1_2:45350121-45350140 None:intergenic 25.0%
! TAGTTAGCAAATCTCAATAT+AGG + chr1_2:45350318-45350337 Msa0072420:intron 25.0%
!!! AACTCAATTATTTTTCAGAG+GGG - chr1_2:45350377-45350396 None:intergenic 25.0%
!!! GAACTCAATTATTTTTCAGA+GGG - chr1_2:45350378-45350397 None:intergenic 25.0%
!!! GTTGGTATTGAAAATTTTAG+AGG + chr1_2:45350559-45350578 Msa0072420:CDS 25.0%
!!! TATTGAAAATTTTAGAGGCA+TGG + chr1_2:45350564-45350583 Msa0072420:CDS 25.0%
!!! AATTGGTTTACCTTTTTCTT+TGG - chr1_2:45351043-45351062 None:intergenic 25.0%
! ACTTGAAAGATTTAGAGAAT+TGG - chr1_2:45351060-45351079 None:intergenic 25.0%
! AATTGTTTAGATTGGAGAAA+TGG + chr1_2:45351297-45351316 Msa0072420:intron 25.0%
!! TTTTTGTTACAGGTTGAAAC+TGG + chr1_2:45347896-45347915 Msa0072420:intron 30.0%
!! TTTTGTTACAGGTTGAAACT+GGG + chr1_2:45347897-45347916 Msa0072420:intron 30.0%
!!! CGTTGTTGAGTTTGTTTTTA+AGG + chr1_2:45348139-45348158 Msa0072420:intron 30.0%
!!! GTTTGTTTTTAAGGTTTTGG+TGG + chr1_2:45348148-45348167 Msa0072420:intron 30.0%
! TAGGAATTTGAAACCAAACT+AGG + chr1_2:45348341-45348360 Msa0072420:intron 30.0%
CATAAGCTGTTTATTCAAAC+CGG - chr1_2:45348600-45348619 None:intergenic 30.0%
GTTTGTCATGAAACTGATAT+AGG + chr1_2:45348977-45348996 Msa0072420:intron 30.0%
!! GCTGTTTTCACAAGTTATTA+TGG + chr1_2:45349232-45349251 Msa0072420:intron 30.0%
!! TAGCACTGATAAGACTATTT+GGG - chr1_2:45349297-45349316 None:intergenic 30.0%
!! TTAGCACTGATAAGACTATT+TGG - chr1_2:45349298-45349317 None:intergenic 30.0%
AAAGTAGGTAAAAACCTTTG+TGG - chr1_2:45349562-45349581 None:intergenic 30.0%
GTTTGCCATTAAACCAAATT+AGG + chr1_2:45349651-45349670 Msa0072420:intron 30.0%
! TTAAGTTGTTCACCCAAATA+GGG - chr1_2:45349677-45349696 None:intergenic 30.0%
! ATTAAGTTGTTCACCCAAAT+AGG - chr1_2:45349678-45349697 None:intergenic 30.0%
! TTATGAGCTATAAGCTGTTT+TGG + chr1_2:45349757-45349776 Msa0072420:intron 30.0%
AGACACTTAAACTTATCTAC+TGG - chr1_2:45349873-45349892 None:intergenic 30.0%
GATAAGTTTAAGTGTCTGTT+TGG + chr1_2:45349876-45349895 Msa0072420:intron 30.0%
! TATATTTTGTGGGACTGTTT+AGG - chr1_2:45350110-45350129 None:intergenic 30.0%
CCCACAAAATATATGTCAAT+AGG + chr1_2:45350117-45350136 Msa0072420:intron 30.0%
ATGATTACAAAGAGTCTGTT+TGG - chr1_2:45350162-45350181 None:intergenic 30.0%
TGAACTGCAATCATAACTAA+GGG - chr1_2:45350195-45350214 None:intergenic 30.0%
TTAGTTATGATTGCAGTTCA+GGG + chr1_2:45350195-45350214 Msa0072420:intron 30.0%
!! GGAACTCAATTATTTTTCAG+AGG - chr1_2:45350379-45350398 None:intergenic 30.0%
GCTCTTACTATGTATGAATA+AGG - chr1_2:45350400-45350419 None:intergenic 30.0%
TAAGAGCTCCAAATATTACA+TGG + chr1_2:45350413-45350432 Msa0072420:intron 30.0%
ATCGCTTTCCATGTAATATT+TGG - chr1_2:45350424-45350443 None:intergenic 30.0%
AGATCCATACTGCAAAATAT+AGG - chr1_2:45350467-45350486 None:intergenic 30.0%
TGATAAGAAAATAGCTCCAA+AGG + chr1_2:45350600-45350619 Msa0072420:CDS 30.0%
!! GTTTTACTTGATCTTTTTCG+CGG + chr1_2:45350697-45350716 Msa0072420:CDS 30.0%
! TCTCTTTCACATTCTTTTGT+CGG + chr1_2:45350744-45350763 Msa0072420:intron 30.0%
!! GTACTTGTTCTGTTTCTAAT+AGG + chr1_2:45351120-45351139 Msa0072420:intron 30.0%
ATAGGAGAAGAATGTCAAAA+AGG + chr1_2:45351138-45351157 Msa0072420:intron 30.0%
ATTTCCAATCTTTCCTTGTA+GGG - chr1_2:45351167-45351186 None:intergenic 30.0%
TGTTTATATTCCAGATCAGA+AGG + chr1_2:45351186-45351205 Msa0072420:CDS 30.0%
! GTTTTGCCTAATAAATCGAA+AGG + chr1_2:45351319-45351338 Msa0072420:CDS 30.0%
TTCACTCCTTTCGATTTATT+AGG - chr1_2:45351328-45351347 None:intergenic 30.0%
! CAAAGAAAAGACCTTCGTTT+TGG - chr1_2:45347655-45347674 None:intergenic 35.0%
! GTAATGATGGTTACGAGTTT+TGG - chr1_2:45347827-45347846 None:intergenic 35.0%
! AAGAAAACGTTGTTGCTTCA+TGG + chr1_2:45347920-45347939 Msa0072420:CDS 35.0%
!!! ATTAAACCTTTTGAAGCTGG+TGG + chr1_2:45348037-45348056 Msa0072420:CDS 35.0%
CAATTCACTTACACAACAAG+AGG - chr1_2:45348274-45348293 None:intergenic 35.0%
GTTGTGTAAGTGAATTGCAT+AGG + chr1_2:45348277-45348296 Msa0072420:intron 35.0%
TAGTAGATAAGTTTAAGGGC+CGG + chr1_2:45348578-45348597 Msa0072420:intron 35.0%
AGTCTATCCAAATAAGCTCT+TGG + chr1_2:45349340-45349359 Msa0072420:intron 35.0%
ATCACAACCAAGAGCTTATT+TGG - chr1_2:45349350-45349369 None:intergenic 35.0%
TTGGTTGTGATAGTAGATCA+GGG + chr1_2:45349359-45349378 Msa0072420:intron 35.0%
! TAGGGCCTAATTTGGTTTAA+TGG - chr1_2:45349659-45349678 None:intergenic 35.0%
AAACCAAATTAGGCCCTATT+TGG + chr1_2:45349661-45349680 Msa0072420:intron 35.0%
AACCAAATTAGGCCCTATTT+GGG + chr1_2:45349662-45349681 Msa0072420:intron 35.0%
!!! AAGCTGTTTTGGAAAGCTTA+AGG + chr1_2:45349768-45349787 Msa0072420:intron 35.0%
CTGAACTGCAATCATAACTA+AGG - chr1_2:45350196-45350215 None:intergenic 35.0%
CTTAGTTATGATTGCAGTTC+AGG + chr1_2:45350194-45350213 Msa0072420:intron 35.0%
TAGTTATGATTGCAGTTCAG+GGG + chr1_2:45350196-45350215 Msa0072420:intron 35.0%
! GTTGCCTATATTTTGCAGTA+TGG + chr1_2:45350460-45350479 Msa0072420:intron 35.0%
AGACCTAATAACCTTGTTCT+CGG + chr1_2:45350499-45350518 Msa0072420:CDS 35.0%
CTTCTATCAGATCATAGACA+TGG - chr1_2:45350540-45350559 None:intergenic 35.0%
GTCTATGATCTGATAGAAGT+TGG + chr1_2:45350541-45350560 Msa0072420:CDS 35.0%
AAGAAAATAGCTCCAAAGGA+AGG + chr1_2:45350604-45350623 Msa0072420:CDS 35.0%
! AAGCCTTTTATGGCTTTCAT+TGG + chr1_2:45350631-45350650 Msa0072420:CDS 35.0%
! AGCCTTTTATGGCTTTCATT+GGG + chr1_2:45350632-45350651 Msa0072420:CDS 35.0%
AAGTGATGCATATGATTCAC+AGG + chr1_2:45350787-45350806 Msa0072420:intron 35.0%
GTGGAGAATTTAAATCTTGC+CGG + chr1_2:45350812-45350831 Msa0072420:CDS 35.0%
TGTGTGAAAAACACCTTAGT+TGG - chr1_2:45350872-45350891 None:intergenic 35.0%
CTTCTACCAATTCCATTCTT+GGG - chr1_2:45350931-45350950 None:intergenic 35.0%
ACTTCTACCAATTCCATTCT+TGG - chr1_2:45350932-45350951 None:intergenic 35.0%
AGAATGGAATTGGTAGAAGT+TGG + chr1_2:45350932-45350951 Msa0072420:CDS 35.0%
TTCATCACACTTTCATTAGG+AGG - chr1_2:45350992-45351011 None:intergenic 35.0%
! TCCTAATGAAAGTGTGATGA+AGG + chr1_2:45350991-45351010 Msa0072420:CDS 35.0%
TCCTTCATCACACTTTCATT+AGG - chr1_2:45350995-45351014 None:intergenic 35.0%
TTTCCAATCTTTCCTTGTAG+GGG - chr1_2:45351166-45351185 None:intergenic 35.0%
CATTTCCAATCTTTCCTTGT+AGG - chr1_2:45351168-45351187 None:intergenic 35.0%
ATAAATCGAAAGGAGTGAAG+AGG + chr1_2:45351329-45351348 Msa0072420:CDS 35.0%
TAAATCGAAAGGAGTGAAGA+GGG + chr1_2:45351330-45351349 Msa0072420:CDS 35.0%
ACAAAACTCATTCCCTGTAA+GGG - chr1_2:45351561-45351580 None:intergenic 35.0%
AACAAAACTCATTCCCTGTA+AGG - chr1_2:45351562-45351581 None:intergenic 35.0%
TTCAGATGGGTATAGTTTCA+AGG + chr1_2:45351705-45351724 Msa0072420:three_prime_UTR 35.0%
!!! TTTTGGAGCACGTTTCTTGA+GGG - chr1_2:45347810-45347829 None:intergenic 40.0%
TTGTGCGAAAAACTCCAAAG+AGG - chr1_2:45348068-45348087 None:intergenic 40.0%
AACTGATTGCAGTCTCTTTC+TGG + chr1_2:45348090-45348109 Msa0072420:CDS 40.0%
AACAAGCTGAGAACAGCTTA+TGG + chr1_2:45348510-45348529 Msa0072420:intron 40.0%
AAACTGATATAGGCCCTGTT+TGG + chr1_2:45348987-45349006 Msa0072420:intron 40.0%
CTTGGTTGTGATAGTAGATC+AGG + chr1_2:45349358-45349377 Msa0072420:intron 40.0%
TGGTTGTGATAGTAGATCAG+GGG + chr1_2:45349360-45349379 Msa0072420:intron 40.0%
GTTGTGTAAGTGAACCACAA+AGG + chr1_2:45349545-45349564 Msa0072420:intron 40.0%
GACCTAATAACCTTGTTCTC+GGG + chr1_2:45350500-45350519 Msa0072420:CDS 40.0%
! AAAGGCTTTGATCCTTCCTT+TGG - chr1_2:45350619-45350638 None:intergenic 40.0%
! GGAAGGATCAAAGCCTTTTA+TGG + chr1_2:45350621-45350640 Msa0072420:CDS 40.0%
! GCCTTTTATGGCTTTCATTG+GGG + chr1_2:45350633-45350652 Msa0072420:CDS 40.0%
TCCCCAATGAAAGCCATAAA+AGG - chr1_2:45350637-45350656 None:intergenic 40.0%
TTTATGGCTTTCATTGGGGA+AGG + chr1_2:45350637-45350656 Msa0072420:CDS 40.0%
GAACGAACTTAAACAGCTGA+AGG + chr1_2:45350672-45350691 Msa0072420:CDS 40.0%
TGCATATGATTCACAGGTTG+TGG + chr1_2:45350793-45350812 Msa0072420:intron 40.0%
GAATTTAAATCTTGCCGGAG+TGG + chr1_2:45350817-45350836 Msa0072420:CDS 40.0%
AAACACCTTAGTTGGAGACA+GGG - chr1_2:45350864-45350883 None:intergenic 40.0%
AAAACACCTTAGTTGGAGAC+AGG - chr1_2:45350865-45350884 None:intergenic 40.0%
! TTTTCACACACTGTGCATTG+CGG + chr1_2:45350882-45350901 Msa0072420:CDS 40.0%
GCATTGCGGTTGAAAAAATC+TGG + chr1_2:45350896-45350915 Msa0072420:CDS 40.0%
AGTTGTCCCAAGAATGGAAT+TGG + chr1_2:45350922-45350941 Msa0072420:CDS 40.0%
CGAATAACCATATCCATGGA+AGG - chr1_2:45350959-45350978 None:intergenic 40.0%
AGGAAGCCATGAAAACTTCA+AGG + chr1_2:45351011-45351030 Msa0072420:CDS 40.0%
GGAAGCCATGAAAACTTCAA+GGG + chr1_2:45351012-45351031 Msa0072420:CDS 40.0%
! CTTGTCCCTTGAAGTTTTCA+TGG - chr1_2:45351020-45351039 None:intergenic 40.0%
AAGGGACAAGCCAAAGAAAA+AGG + chr1_2:45351030-45351049 Msa0072420:CDS 40.0%
ATTCCAGATCAGAAGGTAAG+AGG + chr1_2:45351193-45351212 Msa0072420:intron 40.0%
TTCCAGATCAGAAGGTAAGA+GGG + chr1_2:45351194-45351213 Msa0072420:intron 40.0%
TCATGATCAAAAGACAGGCA+GGG - chr1_2:45351466-45351485 None:intergenic 40.0%
TTCATGATCAAAAGACAGGC+AGG - chr1_2:45351467-45351486 None:intergenic 40.0%
TCGCTTCATGATCAAAAGAC+AGG - chr1_2:45351471-45351490 None:intergenic 40.0%
ATTCTAGATTTCCCCCTTAC+AGG + chr1_2:45351545-45351564 Msa0072420:three_prime_UTR 40.0%
TTCTAGATTTCCCCCTTACA+GGG + chr1_2:45351546-45351565 Msa0072420:three_prime_UTR 40.0%
AAAACTCATTCCCTGTAAGG+GGG - chr1_2:45351559-45351578 None:intergenic 40.0%
CAAAACTCATTCCCTGTAAG+GGG - chr1_2:45351560-45351579 None:intergenic 40.0%
GGATAAAGGTCGTCTAAATC+AGG - chr1_2:45351624-45351643 None:intergenic 40.0%
ACTAATCCACTCGAGGATAA+AGG - chr1_2:45351638-45351657 None:intergenic 40.0%
!!! GTTTTGGAGCACGTTTCTTG+AGG - chr1_2:45347811-45347830 None:intergenic 45.0%
TCATGGAACCAAAACGAGTG+CGG + chr1_2:45347937-45347956 Msa0072420:CDS 45.0%
! GTTCAAAACCGCACTCGTTT+TGG - chr1_2:45347948-45347967 None:intergenic 45.0%
GTTTCACCACCAGCTTCAAA+AGG - chr1_2:45348046-45348065 None:intergenic 45.0%
AAACCAAACTAGGCCCTGTT+TGG + chr1_2:45348351-45348370 Msa0072420:intron 45.0%
AATCCAAACAGGGCCTAGTT+TGG - chr1_2:45348357-45348376 None:intergenic 45.0%
TTCCATAAGCTCTCCTTAGC+AGG + chr1_2:45348537-45348556 Msa0072420:intron 45.0%
TCCATAAGCTCTCCTTAGCA+GGG + chr1_2:45348538-45348557 Msa0072420:intron 45.0%
CACCCAAATAGGGCCTAATT+TGG - chr1_2:45349667-45349686 None:intergenic 45.0%
AAGCACTTGTGACACTGCTT+GGG - chr1_2:45349847-45349866 None:intergenic 45.0%
TAAGCACTTGTGACACTGCT+TGG - chr1_2:45349848-45349867 None:intergenic 45.0%
TACCCGAAACTTGTGATGCT+AGG + chr1_2:45350251-45350270 Msa0072420:intron 45.0%
AGGCCTAGCATCACAAGTTT+CGG - chr1_2:45350257-45350276 None:intergenic 45.0%
CTCCCGAGAACAAGGTTATT+AGG - chr1_2:45350505-45350524 None:intergenic 45.0%
CATACATTCTCCCGAGAACA+AGG - chr1_2:45350513-45350532 None:intergenic 45.0%
!! ACTTGATCTTTTTCGCGGAG+AGG + chr1_2:45350702-45350721 Msa0072420:CDS 45.0%
GGGCAGTACATACATATGCA+CGG - chr1_2:45350844-45350863 None:intergenic 45.0%
AGTTGGTCCTTCCATGGATA+TGG + chr1_2:45350949-45350968 Msa0072420:CDS 45.0%
CCATGGATATGGTTATTCGC+CGG + chr1_2:45350960-45350979 Msa0072420:CDS 45.0%
TTTCATTAGGAGGACGATGC+CGG - chr1_2:45350982-45351001 None:intergenic 45.0%
GTCAAAAAGGATCCCCTACA+AGG + chr1_2:45351151-45351170 Msa0072420:CDS 45.0%
GATCCCCTACAAGGAAAGAT+TGG + chr1_2:45351160-45351179 Msa0072420:CDS 45.0%
AAGCCAAGCAGCAGAAACAT+GGG + chr1_2:45351362-45351381 Msa0072420:CDS 45.0%
GCATGCATCGAAAAAGCAGA+AGG + chr1_2:45351393-45351412 Msa0072420:CDS 45.0%
ACTACTCACTAATCCACTCG+AGG - chr1_2:45351645-45351664 None:intergenic 45.0%
CTTTGCTGCCTTCTTCGCTA+TGG + chr1_2:45347670-45347689 Msa0072420:exon 50.0%
! TCTGAAACTGTGCGGTGTGA+GGG - chr1_2:45347697-45347716 None:intergenic 50.0%
!! TTCTGAAACTGTGCGGTGTG+AGG - chr1_2:45347698-45347717 None:intergenic 50.0%
TTTCAGAACCGCCACAGTCA+AGG + chr1_2:45347710-45347729 Msa0072420:CDS 50.0%
!! GGCGGTTCTGAATTCAGAGA+AGG - chr1_2:45347765-45347784 None:intergenic 50.0%
AGAACCGCCACAACCCATAA+GGG + chr1_2:45347776-45347795 Msa0072420:CDS 50.0%
! TTTGCCCTTATGGGTTGTGG+CGG - chr1_2:45347783-45347802 None:intergenic 50.0%
! GAGTTTGCCCTTATGGGTTG+TGG - chr1_2:45347786-45347805 None:intergenic 50.0%
! AGCTGGTGGTGAAACCTCTT+TGG + chr1_2:45348051-45348070 Msa0072420:CDS 50.0%
ACCCTGCTAAGGAGAGCTTA+TGG - chr1_2:45348542-45348561 None:intergenic 50.0%
ACACTGCTTGGGAGAGCTTA+TGG - chr1_2:45349836-45349855 None:intergenic 50.0%
GGCCTAGCATCACAAGTTTC+GGG - chr1_2:45350256-45350275 None:intergenic 50.0%
! CACATTCTTTTGTCGGCAGC+TGG + chr1_2:45350751-45350770 Msa0072420:intron 50.0%
TACATATGCACGGTCCACTC+CGG - chr1_2:45350834-45350853 None:intergenic 50.0%
TACTGCCCTGTCTCCAACTA+AGG + chr1_2:45350856-45350875 Msa0072420:CDS 50.0%
TGGCACAGTTGTCCCAAGAA+TGG + chr1_2:45350916-45350935 Msa0072420:CDS 50.0%
! GGTAGAAGTTGGTCCTTCCA+TGG + chr1_2:45350943-45350962 Msa0072420:CDS 50.0%
CCGGCGAATAACCATATCCA+TGG - chr1_2:45350963-45350982 None:intergenic 50.0%
GTCCCTCTTACCTTCTGATC+TGG - chr1_2:45351199-45351218 None:intergenic 50.0%
! GTTTCTGCTGCTTGGCTTCT+CGG - chr1_2:45351360-45351379 None:intergenic 50.0%
GAAGCCAAGCAGCAGAAACA+TGG + chr1_2:45351361-45351380 Msa0072420:CDS 50.0%
! ACTCCCATGTTTCTGCTGCT+TGG - chr1_2:45351368-45351387 None:intergenic 50.0%
GACAGGCAGGGAAAGACAAT+AGG - chr1_2:45351454-45351473 None:intergenic 50.0%
AGACGACCTTTATCCTCGAG+TGG + chr1_2:45351629-45351648 Msa0072420:three_prime_UTR 50.0%
CTGAAACTGTGCGGTGTGAG+GGG - chr1_2:45347696-45347715 None:intergenic 55.0%
!! GTGGCGGTTCTGAAACTGTG+CGG - chr1_2:45347705-45347724 None:intergenic 55.0%
CAGAACCGCCACAACCCATA+AGG + chr1_2:45347775-45347794 Msa0072420:CDS 55.0%
GAGGGCGAGTTTGCCCTTAT+GGG - chr1_2:45347792-45347811 None:intergenic 55.0%
TGAGGGCGAGTTTGCCCTTA+TGG - chr1_2:45347793-45347812 None:intergenic 55.0%
AAGCACTCGTCACCCTGCTA+AGG - chr1_2:45348553-45348572 None:intergenic 55.0%
GCAGGGTGACGAGTGCTTAT+TGG + chr1_2:45348555-45348574 Msa0072420:intron 55.0%
GTGAGGGGCCATAGCGAAGA+AGG - chr1_2:45347681-45347700 None:intergenic 60.0%
CAGAACCGCCACAGTCAAGG+TGG + chr1_2:45347713-45347732 Msa0072420:CDS 60.0%
TGTGTGCGCCACCTTGACTG+TGG - chr1_2:45347724-45347743 None:intergenic 60.0%
GTGCGCCACCTTGACTGTGG+CGG - chr1_2:45347721-45347740 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 45347649 45351788 45347649 ID=Msa0072420;Name=Msa0072420
chr1_2 mRNA 45347649 45351788 45347649 ID=Msa0072420-mRNA-1;Parent=Msa0072420;Name=Msa0072420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=40|1|1|1|1|1|6|359|341
chr1_2 exon 45347649 45347832 45347649 ID=Msa0072420-mRNA-1:exon:13631;Parent=Msa0072420-mRNA-1
chr1_2 exon 45347908 45348111 45347908 ID=Msa0072420-mRNA-1:exon:13632;Parent=Msa0072420-mRNA-1
chr1_2 exon 45350478 45350723 45350478 ID=Msa0072420-mRNA-1:exon:13633;Parent=Msa0072420-mRNA-1
chr1_2 exon 45350809 45351051 45350809 ID=Msa0072420-mRNA-1:exon:13634;Parent=Msa0072420-mRNA-1
chr1_2 exon 45351142 45351207 45351142 ID=Msa0072420-mRNA-1:exon:13635;Parent=Msa0072420-mRNA-1
chr1_2 exon 45351307 45351788 45351307 ID=Msa0072420-mRNA-1:exon:13636;Parent=Msa0072420-mRNA-1
chr1_2 five_prime_UTR 45347649 45347688 45347649 ID=Msa0072420-mRNA-1:five_prime_utr;Parent=Msa0072420-mRNA-1
chr1_2 CDS 45347689 45347832 45347689 ID=Msa0072420-mRNA-1:cds;Parent=Msa0072420-mRNA-1
chr1_2 CDS 45347908 45348111 45347908 ID=Msa0072420-mRNA-1:cds;Parent=Msa0072420-mRNA-1
chr1_2 CDS 45350478 45350723 45350478 ID=Msa0072420-mRNA-1:cds;Parent=Msa0072420-mRNA-1
chr1_2 CDS 45350809 45351051 45350809 ID=Msa0072420-mRNA-1:cds;Parent=Msa0072420-mRNA-1
chr1_2 CDS 45351142 45351207 45351142 ID=Msa0072420-mRNA-1:cds;Parent=Msa0072420-mRNA-1
chr1_2 CDS 45351307 45351429 45351307 ID=Msa0072420-mRNA-1:cds;Parent=Msa0072420-mRNA-1
chr1_2 three_prime_UTR 45351430 45351788 45351430 ID=Msa0072420-mRNA-1:three_prime_utr;Parent=Msa0072420-mRNA-1
Gene Sequence

>Msa0072420

ATGGCCCCTCACACCGCACAGTTTCAGAACCGCCACAGTCAAGGTGGCGCACACACACACAGTAGTTCAACTGCCTTCTCTGAATTCAGAACCGCCACAACCCATAAGGGCAAACTCGCCCTCAAGAAACGTGCTCCAAAACTCGTTGAAACTGGGAAGAAAACGTTGTTGCTTCATGGAACCAAAACGAGTGCGGTTTTGAACGCTGTGTTGACTCAGATTTATCATTTGAAGAAGGAAAGTGCGATTAAGTATAGTCGTAAGAATGATAATATTAAACCTTTTGAAGCTGGTGGTGAAACCTCTTTGGAGTTTTTCGCACAAAAAACTGATTGCAGTCTCTTTCTGTATGGATCTCACTCAAAGAAGAGACCTAATAACCTTGTTCTCGGGAGAATGTATGATTTCCATGTCTATGATCTGATAGAAGTTGGTATTGAAAATTTTAGAGGCATGGAGTCATTTGATTATGATAAGAAAATAGCTCCAAAGGAAGGATCAAAGCCTTTTATGGCTTTCATTGGGGAAGGATTTGAGTCTGTGAACGAACTTAAACAGCTGAAGGAAGTTTTACTTGATCTTTTTCGCGGAGAGGTTGTGGAGAATTTAAATCTTGCCGGAGTGGACCGTGCATATGTATGTACTGCCCTGTCTCCAACTAAGGTGTTTTTCACACACTGTGCATTGCGGTTGAAAAAATCTGGCACAGTTGTCCCAAGAATGGAATTGGTAGAAGTTGGTCCTTCCATGGATATGGTTATTCGCCGGCATCGTCCTCCTAATGAAAGTGTGATGAAGGAAGCCATGAAAACTTCAAGGGACAAGCCAAAGAAAAAGGAGAAGAATGTCAAAAAGGATCCCCTACAAGGAAAGATTGGAAATGTTTATATTCCAGATCAGAAGATTGGAGAAATGGTTTTGCCTAATAAATCGAAAGGAGTGAAGAGGGAGCGCCGAGAAGCCAAGCAGCAGAAACATGGGAGTGATGAGCATGCATCGAAAAAGCAGAAGGATGAATCTTCCTAA

Protein sequence

>Msa0072420

MAPHTAQFQNRHSQGGAHTHSSSTAFSEFRTATTHKGKLALKKRAPKLVETGKKTLLLHGTKTSAVLNAVLTQIYHLKKESAIKYSRKNDNIKPFEAGGETSLEFFAQKTDCSLFLYGSHSKKRPNNLVLGRMYDFHVYDLIEVGIENFRGMESFDYDKKIAPKEGSKPFMAFIGEGFESVNELKQLKEVLLDLFRGEVVENLNLAGVDRAYVCTALSPTKVFFTHCALRLKKSGTVVPRMELVEVGPSMDMVIRRHRPPNESVMKEAMKTSRDKPKKKEKNVKKDPLQGKIGNVYIPDQKIGEMVLPNKSKGVKRERREAKQQKHGSDEHASKKQKDESS*