AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336980 MtrunA17_Chr2g0323331 73.425 365 40 5 68 429 59 369 4.46e-165 468
Msa0336980 MtrunA17_Chr2g0323331 47.909 263 102 5 141 400 53 283 4.59e-67 218
Msa0336980 MtrunA17_Chr2g0323331 60.000 185 62 3 224 408 51 223 1.73e-58 196
Msa0336980 MtrunA17_Chr2g0323351 47.410 251 83 9 1 228 1 225 2.65e-48 165
Msa0336980 MtrunA17_Chr2g0323351 56.842 95 36 3 224 316 135 226 7.12e-14 71.2
Msa0336980 MtrunA17_Chr2g0323351 46.667 120 47 5 316 426 137 248 6.36e-11 62.4
Msa0336980 MtrunA17_Chr2g0323321 73.810 84 5 1 1 67 1 84 4.20e-39 136
Msa0336980 MtrunA17_Chr4g0022901 31.418 261 128 7 1 225 1 246 1.37e-29 116
Msa0336980 MtrunA17_Chr4g0022931 31.559 263 125 10 1 225 1 246 9.49e-27 108
Msa0336980 MtrunA17_Chr4g0022911 59.551 89 17 3 1 70 1 89 1.76e-26 108
Msa0336980 MtrunA17_Chr4g0022881 32.381 210 67 6 1 136 1 209 5.48e-24 99.8
Msa0336980 MtrunA17_Chr4g0042611 50.588 85 24 2 1 67 1 85 2.77e-21 87.8
Msa0336980 MtrunA17_Chr1g0167691 51.765 85 23 2 1 67 1 85 6.07e-21 91.7
Msa0336980 MtrunA17_Chr2g0281071 53.933 89 22 2 1 70 1 89 6.18e-21 93.6
Msa0336980 MtrunA17_Chr6g0453471 46.729 107 35 4 1 86 1 106 6.86e-21 93.6
Msa0336980 MtrunA17_Chr4g0048511 51.685 89 24 2 1 70 1 89 8.31e-21 93.2
Msa0336980 MtrunA17_Chr1g0167661 51.765 85 23 2 1 67 1 85 2.20e-20 90.1
Msa0336980 MtrunA17_Chr4g0042671 52.941 85 22 2 1 67 1 85 3.17e-20 92.0
Msa0336980 MtrunA17_Chr1g0187761 51.765 85 23 2 1 67 1 85 3.23e-20 89.7
Msa0336980 MtrunA17_Chr3g0115821 48.864 88 27 2 1 70 1 88 4.81e-20 90.9
Msa0336980 MtrunA17_Chr2g0294811 49.412 85 25 2 1 67 1 85 6.89e-20 85.1
Msa0336980 MtrunA17_Chr4g0022891 29.020 255 108 9 1 222 1 215 7.09e-20 88.6
Msa0336980 MtrunA17_Chr5g0410961 51.136 88 25 2 1 70 1 88 1.07e-19 89.7
Msa0336980 MtrunA17_Chr4g0037141 45.283 106 38 3 1 86 1 106 1.82e-19 88.2
Msa0336980 MtrunA17_Chr2g0323411 52.273 88 24 2 1 70 1 88 2.01e-19 88.6
Msa0336980 MtrunA17_Chr7g0217741 51.220 82 22 2 1 64 1 82 2.43e-19 88.2
Msa0336980 MtrunA17_Chr7g0274581 47.727 88 28 2 1 70 1 88 2.81e-19 85.9
Msa0336980 MtrunA17_Chr5g0395221 46.591 88 29 2 1 70 1 88 4.32e-19 81.6
Msa0336980 MtrunA17_Chr8g0342511 45.570 79 26 1 6 67 7 85 9.89e-19 80.9
Msa0336980 MtrunA17_Chr1g0193371 50.633 79 22 1 6 67 7 85 1.93e-18 86.3
Msa0336980 MtrunA17_Chr6g0453211 44.340 106 39 3 1 86 1 106 2.00e-18 85.9
Msa0336980 MtrunA17_Chr2g0311221 50.000 86 25 2 3 70 5 90 2.21e-18 85.9
Msa0336980 MtrunA17_Chr1g0211161 53.425 73 17 1 12 67 14 86 2.23e-18 84.0
Msa0336980 MtrunA17_Chr4g0039971 45.283 106 38 3 1 86 2 107 2.44e-18 85.9
Msa0336980 MtrunA17_Chr7g0261281 48.235 85 26 2 1 67 1 85 2.47e-18 84.7
Msa0336980 MtrunA17_Chr5g0435101 48.810 84 26 1 1 67 1 84 2.57e-18 83.2
Msa0336980 MtrunA17_Chr3g0117091 53.425 73 17 1 12 67 13 85 2.60e-18 85.9
Msa0336980 MtrunA17_Chr3g0131121 47.727 88 28 2 1 70 1 88 3.72e-18 84.7
Msa0336980 MtrunA17_Chr4g0058631 50.633 79 22 1 6 67 7 85 4.01e-18 85.5
Msa0336980 MtrunA17_Chr4g0057031 42.991 107 41 3 1 87 1 107 4.28e-18 84.0
Msa0336980 MtrunA17_Chr1g0203411 47.059 85 27 2 1 67 1 85 4.76e-18 84.3
Msa0336980 MtrunA17_Chr5g0417821 46.392 97 33 2 10 87 6 102 6.48e-18 83.6
Msa0336980 MtrunA17_Chr8g0342531 46.835 79 25 1 6 67 7 85 6.61e-18 80.9
Msa0336980 MtrunA17_Chr8g0349261 47.126 87 26 2 1 67 1 87 7.16e-18 83.6
Msa0336980 MtrunA17_Chr7g0217221 49.412 85 25 2 1 67 1 85 8.17e-18 83.2
Msa0336980 MtrunA17_Chr7g0228891 47.059 85 27 2 1 67 1 85 8.29e-18 83.2
Msa0336980 MtrunA17_Chr4g0068061 50.588 85 24 2 1 67 1 85 8.64e-18 84.3
Msa0336980 MtrunA17_Chr3g0110351 48.235 85 26 2 1 67 1 85 9.61e-18 83.6
Msa0336980 MtrunA17_Chr8g0346561 44.340 106 39 3 1 86 1 106 1.67e-17 82.8
Msa0336980 MtrunA17_Chr8g0385321 45.455 88 30 2 1 70 1 88 2.17e-17 82.8
Msa0336980 MtrunA17_Chr5g0434571 47.059 85 27 2 1 67 37 121 2.39e-17 83.2
Msa0336980 MtrunA17_Chr5g0395281 47.727 88 28 2 1 70 1 88 2.86e-17 82.0
Msa0336980 MtrunA17_Chr4g0070611 47.059 85 27 2 1 67 1 85 3.47e-17 82.0
Msa0336980 MtrunA17_Chr4g0044421 54.167 72 16 1 13 67 14 85 3.64e-17 79.3
Msa0336980 MtrunA17_Chr3g0092401 49.412 85 25 2 1 67 2 86 4.56e-17 81.6
Msa0336980 MtrunA17_Chr5g0397231 47.368 76 23 1 6 64 7 82 4.93e-17 82.0
Msa0336980 MtrunA17_Chr7g0270891 48.101 79 24 1 6 67 7 85 4.98e-17 82.4
Msa0336980 MtrunA17_Chr1g0193801 46.835 79 25 1 6 67 7 85 6.22e-17 82.0
Msa0336980 MtrunA17_Chr7g0271241 47.561 82 26 1 6 70 7 88 6.31e-17 82.0
Msa0336980 MtrunA17_Chr8g0342461 46.250 80 25 1 6 67 7 86 6.56e-17 77.4
Msa0336980 MtrunA17_Chr4g0032401 51.948 77 20 1 8 67 14 90 6.74e-17 81.3
Msa0336980 MtrunA17_Chr8g0342541 45.570 79 26 1 6 67 7 85 6.97e-17 81.6
Msa0336980 MtrunA17_Chr4g0055981 44.086 93 33 2 13 86 57 149 7.77e-17 79.3
Msa0336980 MtrunA17_Chr2g0330041 33.533 167 83 3 6 144 7 173 8.13e-17 82.0
Msa0336980 MtrunA17_Chr8g0342471 46.250 80 25 1 6 67 7 86 8.80e-17 77.0
Msa0336980 MtrunA17_Chr4g0070641 47.059 85 27 2 1 67 1 85 1.10e-16 77.4
Msa0336980 MtrunA17_Chr2g0309911 46.835 79 25 1 6 67 6 84 1.20e-16 80.5
Msa0336980 MtrunA17_Chr7g0275911 46.341 82 26 2 1 64 1 82 1.29e-16 79.3
Msa0336980 MtrunA17_Chr8g0387421 47.368 76 23 1 6 64 7 82 1.95e-16 79.7
Msa0336980 MtrunA17_Chr1g0186061 52.055 73 18 1 11 66 20 92 2.21e-16 78.6
Msa0336980 MtrunA17_Chr8g0342521 45.570 79 26 1 6 67 7 85 2.33e-16 80.1
Msa0336980 MtrunA17_Chr2g0328771 50.685 73 19 1 12 67 21 93 3.14e-16 79.3
Msa0336980 MtrunA17_Chr8g0342481 45.000 80 26 1 6 67 7 86 3.67e-16 80.1
Msa0336980 MtrunA17_Chr3g0088461 50.685 73 19 1 12 67 23 95 3.79e-16 79.3
Msa0336980 MtrunA17_Chr5g0400821 42.697 89 32 2 1 70 1 89 5.52e-16 78.6
Msa0336980 MtrunA17_Chr1g0194951 47.561 82 25 2 1 64 1 82 5.61e-16 79.0
Msa0336980 MtrunA17_Chr7g0264641 43.434 99 31 3 1 74 1 99 6.12e-16 77.8
Msa0336980 MtrunA17_Chr3g0103281 45.122 82 27 2 1 64 1 82 8.18e-16 78.2
Msa0336980 MtrunA17_Chr3g0135311 40.187 107 43 3 1 86 1 107 1.11e-15 77.8
Msa0336980 MtrunA17_Chr3g0099141 45.679 81 27 1 7 70 36 116 1.33e-15 73.6
Msa0336980 MtrunA17_Chr1g0180391 47.368 76 23 1 12 70 20 95 1.51e-15 75.9
Msa0336980 MtrunA17_Chr7g0254411 46.591 88 29 2 1 70 1 88 1.60e-15 77.4
Msa0336980 MtrunA17_Chr1g0168661 50.685 73 19 1 11 66 21 93 1.62e-15 76.3
Msa0336980 MtrunA17_Chr6g0452271 43.182 88 32 2 1 70 1 88 2.25e-15 77.0
Msa0336980 MtrunA17_Chr4g0054391 41.573 89 33 2 1 70 1 89 2.44e-15 76.3
Msa0336980 MtrunA17_Chr4g0060721 45.882 85 28 2 1 67 2 86 2.64e-15 76.6
Msa0336980 MtrunA17_Chr3g0099131 41.489 94 36 2 12 86 42 135 2.66e-15 77.8
Msa0336980 MtrunA17_Chr2g0327351 42.697 89 32 2 1 70 1 89 2.79e-15 76.6
Msa0336980 MtrunA17_Chr1g0152011 41.573 89 33 2 1 70 1 89 2.97e-15 76.6
Msa0336980 MtrunA17_Chr4g0028311 41.573 89 33 2 1 70 1 89 4.20e-15 75.9
Msa0336980 MtrunA17_Chr3g0121241 44.304 79 27 1 6 67 37 115 4.32e-15 75.9
Msa0336980 MtrunA17_Chr8g0343831 38.333 120 44 5 1 93 1 117 7.10e-15 74.3
Msa0336980 MtrunA17_Chr1g0151941 38.202 89 36 2 1 70 1 89 7.16e-15 74.3
Msa0336980 MtrunA17_Chr6g0487491 40.000 90 35 2 1 71 1 90 7.20e-15 74.3
Msa0336980 MtrunA17_Chr1g0203441 48.684 76 22 1 12 70 14 89 9.10e-15 74.3
Msa0336980 MtrunA17_Chr7g0240821 52.857 70 16 2 15 67 5 74 9.54e-15 73.6
Msa0336980 MtrunA17_Chr6g0453751 38.889 90 30 1 8 72 17 106 1.05e-14 70.9
Msa0336980 MtrunA17_Chr8g0354661 46.053 76 24 1 12 70 38 113 1.20e-14 75.9
Msa0336980 MtrunA17_Chr4g0072751 41.573 89 33 2 1 70 1 89 1.57e-14 74.7
Msa0336980 MtrunA17_Chr1g0209661 47.222 72 21 1 12 66 28 99 2.58e-14 73.6
Msa0336980 MtrunA17_Chr7g0228231 47.222 72 21 1 12 66 15 86 3.40e-14 71.2
Msa0336980 MtrunA17_Chr1g0194301 47.222 72 21 2 12 66 34 105 9.93e-14 71.2
Msa0336980 MtrunA17_Chr1g0194291 45.946 74 23 1 10 66 20 93 1.10e-13 70.9
Msa0336980 MtrunA17_Chr6g0450101 41.860 86 30 2 1 66 1 86 1.40e-13 69.7
Msa0336980 MtrunA17_Chr8g0360111 44.737 76 25 1 9 67 23 98 1.51e-13 70.5
Msa0336980 MtrunA17_Chr3g0080861 43.836 73 24 1 12 67 38 110 1.85e-13 72.0
Msa0336980 MtrunA17_Chr7g0247131 61.364 44 17 0 24 67 8 51 3.27e-13 69.7
Msa0336980 MtrunA17_Chr1g0154031 38.298 94 39 2 12 86 77 170 4.77e-13 70.5
Msa0336980 MtrunA17_Chr6g0470971 44.156 77 26 1 11 70 14 90 5.52e-13 68.9
Msa0336980 MtrunA17_Chr7g0228991 46.667 75 23 1 10 67 28 102 7.33e-13 68.6
Msa0336980 MtrunA17_Chr5g0434911 43.038 79 28 1 6 67 16 94 7.69e-13 68.6
Msa0336980 MtrunA17_Chr7g0220341 42.857 77 25 1 10 67 24 100 9.42e-13 68.2
Msa0336980 MtrunA17_Chr5g0434931 44.737 76 25 1 9 67 33 108 1.18e-12 68.2
Msa0336980 MtrunA17_Chr5g0425591 41.667 72 25 1 12 66 10 81 1.52e-12 63.5
Msa0336980 MtrunA17_Chr7g0269831 48.780 82 24 2 1 64 1 82 4.79e-12 67.0
Msa0336980 MtrunA17_Chr4g0030881 40.506 79 23 1 12 66 8 86 4.79e-12 65.9
Msa0336980 MtrunA17_Chr2g0327821 41.667 72 25 1 12 66 7 78 8.61e-12 64.7
Msa0336980 MtrunA17_Chr1g0192411 39.474 76 29 1 12 70 13 88 1.59e-11 65.9
Msa0336980 MtrunA17_Chr2g0322521 48.718 78 23 1 10 70 28 105 1.63e-11 65.9
Msa0336980 MtrunA17_Chr5g0440761 40.278 72 26 1 12 66 13 84 2.56e-11 63.9
Msa0336980 MtrunA17_Chr5g0441141 40.278 72 26 1 12 66 13 84 2.81e-11 63.9
Msa0336980 MtrunA17_Chr5g0440781 40.278 72 26 1 12 66 13 84 3.34e-11 62.4
Msa0336980 MtrunA17_Chr5g0434841 42.308 78 28 1 10 70 19 96 6.35e-11 63.2
Msa0336980 MtrunA17_Chr5g0429661 39.080 87 31 2 13 77 122 208 7.89e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336980 AT1G74080.1 51.042 96 28 3 1 78 1 95 1.06e-21 95.9
Msa0336980 AT5G16770.4 49.057 106 34 3 1 86 1 106 1.85e-21 95.1
Msa0336980 AT5G16770.3 49.057 106 34 3 1 86 1 106 1.85e-21 95.1
Msa0336980 AT5G60890.1 50.538 93 27 3 1 75 1 92 2.21e-21 94.4
Msa0336980 AT5G16770.1 49.057 106 34 3 1 86 1 106 2.73e-21 94.7
Msa0336980 AT5G16770.2 49.057 106 34 3 1 86 1 106 2.73e-21 94.7
Msa0336980 AT4G28110.1 52.273 88 24 2 1 70 1 88 2.76e-21 93.6
Msa0336980 AT5G15310.1 54.118 85 21 2 1 67 1 85 4.25e-21 94.0
Msa0336980 AT5G15310.2 54.118 85 21 2 1 67 1 85 5.15e-21 93.6
Msa0336980 AT5G15310.4 54.118 85 21 2 1 67 1 85 6.66e-21 91.7
Msa0336980 AT4G21440.1 51.136 88 25 2 1 70 1 88 1.43e-20 92.8
Msa0336980 AT1G34670.1 51.136 88 25 2 1 70 1 88 1.63e-20 92.8
Msa0336980 AT3G01140.2 52.941 85 22 2 1 67 1 85 2.58e-20 92.0
Msa0336980 AT3G02940.2 48.113 106 35 3 1 86 1 106 2.87e-20 91.3
Msa0336980 AT3G02940.1 48.113 106 35 3 1 86 1 106 3.68e-20 91.3
Msa0336980 AT3G02940.3 48.113 106 35 3 1 86 1 106 3.68e-20 91.3
Msa0336980 AT4G38620.1 45.283 106 38 3 1 86 1 106 7.98e-20 89.4
Msa0336980 AT5G07690.1 52.439 82 21 2 1 64 1 82 9.75e-20 90.1
Msa0336980 AT5G61420.2 52.439 82 21 2 1 64 1 82 1.30e-19 90.1
Msa0336980 AT3G01140.1 51.765 85 23 2 1 67 44 128 1.53e-19 90.5
Msa0336980 AT4G05100.1 50.562 89 25 2 1 70 1 89 1.61e-19 89.4
Msa0336980 AT5G14750.1 54.545 77 18 1 8 67 13 89 1.74e-19 86.7
Msa0336980 AT4G17785.1 44.860 107 38 3 1 86 1 107 1.94e-19 89.7
Msa0336980 AT4G17785.2 44.860 107 38 3 1 86 1 107 2.16e-19 89.4
Msa0336980 AT1G16490.1 43.269 104 39 3 3 86 5 108 2.37e-19 88.2
Msa0336980 AT2G31180.1 51.765 85 23 2 1 67 1 85 2.84e-19 87.4
Msa0336980 AT1G74430.1 53.846 78 19 1 7 67 8 85 4.06e-19 87.4
Msa0336980 AT5G07700.1 51.220 82 22 2 1 64 1 82 4.15e-19 88.6
Msa0336980 AT5G07700.2 51.220 82 22 2 1 64 1 82 4.15e-19 88.6
Msa0336980 AT3G23250.1 47.059 85 27 2 1 67 1 85 6.44e-19 87.0
Msa0336980 AT3G61250.1 49.412 85 25 2 1 67 1 85 6.52e-19 87.0
Msa0336980 AT1G22640.1 45.283 106 38 3 1 86 1 106 8.11e-19 86.3
Msa0336980 AT4G09460.1 44.340 106 39 3 1 86 1 106 8.35e-19 85.5
Msa0336980 AT1G35515.1 44.340 106 39 3 1 86 1 106 1.09e-18 84.7
Msa0336980 AT1G18570.1 51.807 83 21 2 1 64 1 83 1.51e-18 87.0
Msa0336980 AT2G16720.1 47.727 88 28 2 1 70 1 88 1.80e-18 85.5
Msa0336980 AT1G06180.1 49.412 85 25 2 1 67 1 85 2.20e-18 84.7
Msa0336980 AT5G10280.1 47.727 88 28 2 1 70 1 88 2.81e-18 85.9
Msa0336980 AT4G34990.1 48.864 88 27 2 1 70 1 88 3.64e-18 84.7
Msa0336980 AT3G12720.1 45.122 82 28 1 6 70 17 98 4.45e-18 85.1
Msa0336980 AT1G79180.1 50.000 80 22 2 3 64 5 84 5.79e-18 84.3
Msa0336980 AT5G65230.1 48.864 88 27 2 1 70 1 88 6.38e-18 84.3
Msa0336980 AT5G54230.1 52.632 76 19 1 12 70 13 88 6.73e-18 84.7
Msa0336980 AT3G28470.1 45.455 88 30 2 1 70 1 88 8.89e-18 84.3
Msa0336980 AT5G40330.1 52.703 74 18 1 11 67 12 85 1.06e-17 82.0
Msa0336980 AT4G22680.1 43.925 107 40 3 1 87 1 107 1.36e-17 82.8
Msa0336980 AT4G12350.1 32.474 194 91 7 1 157 1 191 2.04e-17 82.8
Msa0336980 AT1G18710.1 51.282 78 21 1 7 67 8 85 3.40e-17 81.6
Msa0336980 AT5G26660.1 49.367 79 23 1 6 67 7 85 3.42e-17 82.8
Msa0336980 AT5G16600.1 48.235 85 26 2 1 67 1 85 3.62e-17 82.4
Msa0336980 AT4G01680.3 49.367 79 23 1 6 67 7 85 3.92e-17 80.9
Msa0336980 AT3G27920.1 47.561 82 26 1 3 67 6 87 4.94e-17 80.5
Msa0336980 AT3G28910.1 48.235 85 26 2 1 67 1 85 5.15e-17 82.0
Msa0336980 AT1G66230.1 47.059 85 27 2 1 67 1 85 5.33e-17 81.3
Msa0336980 AT3G62610.1 45.455 88 30 2 1 70 1 88 6.09e-17 82.0
Msa0336980 AT4G01680.1 49.367 79 23 1 6 67 7 85 6.13e-17 82.0
Msa0336980 AT1G56160.1 41.346 104 41 3 3 86 5 108 7.70e-17 81.3
Msa0336980 AT5G49330.1 47.059 85 27 2 1 67 1 85 2.23e-16 80.5
Msa0336980 AT1G57560.1 45.570 79 26 1 6 67 7 85 2.67e-16 79.7
Msa0336980 AT1G57560.2 45.570 79 26 1 6 67 7 85 2.69e-16 79.3
Msa0336980 AT1G63910.1 47.368 76 23 1 6 64 7 82 2.71e-16 80.5
Msa0336980 AT3G13890.2 45.570 79 26 1 6 67 7 85 2.81e-16 80.5
Msa0336980 AT5G14340.1 45.882 85 28 2 1 67 13 97 2.91e-16 79.0
Msa0336980 AT3G47600.1 47.059 85 27 2 1 67 1 85 3.88e-16 79.7
Msa0336980 AT1G09540.1 45.570 79 26 1 6 67 7 85 4.50e-16 79.7
Msa0336980 AT3G49690.1 43.820 89 31 2 1 70 1 89 6.76e-16 78.6
Msa0336980 AT5G06100.1 43.373 83 30 1 2 67 23 105 8.16e-16 79.7
Msa0336980 AT3G13540.1 43.902 82 28 2 4 67 15 96 9.66e-16 77.0
Msa0336980 AT5G62320.1 44.444 90 25 2 3 67 4 93 9.98e-16 77.0
Msa0336980 AT5G14750.3 64.151 53 11 1 23 67 3 55 1.01e-15 75.1
Msa0336980 AT5G06100.5 43.373 83 30 1 2 67 23 105 1.07e-15 79.3
Msa0336980 AT5G06100.2 43.373 83 30 1 2 67 23 105 1.07e-15 79.3
Msa0336980 AT5G06100.3 43.373 83 30 1 2 67 23 105 1.07e-15 79.3
Msa0336980 AT5G06100.4 43.373 83 30 1 2 67 23 105 1.07e-15 79.3
Msa0336980 AT1G08810.1 47.727 88 28 2 1 70 1 88 1.14e-15 77.4
Msa0336980 AT2G47460.1 44.706 85 29 2 1 67 1 85 1.14e-15 78.6
Msa0336980 AT3G08500.1 47.368 76 23 1 12 70 31 106 1.27e-15 78.2
Msa0336980 AT3G11440.2 44.186 86 27 2 6 70 32 117 1.29e-15 79.0
Msa0336980 AT3G24310.1 51.351 74 19 1 10 66 17 90 1.39e-15 77.0
Msa0336980 AT5G12870.1 47.945 73 21 1 12 67 19 91 1.47e-15 77.0
Msa0336980 AT3G11440.3 44.186 86 27 2 6 70 32 117 1.47e-15 79.3
Msa0336980 AT3G11440.4 44.186 86 27 2 6 70 32 117 1.47e-15 79.3
Msa0336980 AT3G11440.1 44.186 86 27 2 6 70 32 117 1.47e-15 79.3
Msa0336980 AT5G62470.1 46.429 84 28 2 1 67 1 84 1.64e-15 77.8
Msa0336980 AT4G01680.2 42.857 91 23 1 6 67 7 97 1.94e-15 77.8
Msa0336980 AT5G35550.1 44.330 97 35 2 13 90 16 112 2.30e-15 76.3
Msa0336980 AT5G62470.2 45.882 85 28 2 1 67 1 85 2.35e-15 77.4
Msa0336980 AT5G57620.1 45.783 83 26 2 1 64 1 83 2.52e-15 77.0
Msa0336980 AT2G32460.1 46.914 81 26 1 7 70 14 94 2.88e-15 78.2
Msa0336980 AT3G12820.1 44.444 81 27 2 3 65 5 85 3.01e-15 75.5
Msa0336980 AT5G56110.1 44.706 85 29 2 1 67 1 85 3.08e-15 76.6
Msa0336980 AT4G26930.1 41.489 94 36 2 12 86 20 113 3.26e-15 77.4
Msa0336980 AT2G32460.2 48.718 78 23 1 10 70 5 82 3.52e-15 77.8
Msa0336980 AT5G65790.1 42.697 89 32 2 1 70 1 89 4.02e-15 77.0
Msa0336980 AT5G23000.1 41.573 89 33 2 1 70 1 89 4.35e-15 76.3
Msa0336980 AT3G13890.1 39.560 91 29 1 6 70 7 97 4.77e-15 76.6
Msa0336980 AT5G55020.1 47.368 76 23 1 12 70 27 102 5.62e-15 77.4
Msa0336980 AT4G13480.1 50.685 73 19 1 11 66 6 78 7.08e-15 74.7
Msa0336980 AT1G74650.1 47.059 85 27 2 1 67 1 85 7.30e-15 75.9
Msa0336980 AT3G30210.1 52.778 72 17 1 10 64 26 97 8.91e-15 74.7
Msa0336980 AT2G26960.1 46.667 75 23 1 13 70 22 96 2.99e-14 74.7
Msa0336980 AT1G48000.1 37.615 109 47 3 12 99 33 141 3.45e-14 72.4
Msa0336980 AT3G01530.1 46.575 73 22 1 12 67 26 98 3.81e-14 71.6
Msa0336980 AT3G27810.1 47.222 72 21 1 12 66 21 92 4.08e-14 72.0
Msa0336980 AT2G36890.1 40.449 89 34 2 1 70 1 89 5.19e-14 72.8
Msa0336980 AT2G36890.2 43.902 82 27 2 1 63 42 123 6.57e-14 73.2
Msa0336980 AT4G37780.1 40.449 89 34 2 1 70 1 89 7.04e-14 72.4
Msa0336980 AT1G79180.2 35.398 113 22 2 3 64 5 117 1.23e-13 72.0
Msa0336980 AT1G25340.1 41.489 94 36 2 12 86 19 112 1.27e-13 71.2
Msa0336980 AT2G47190.1 36.697 109 48 3 12 99 21 129 2.33e-13 70.5
Msa0336980 AT1G25340.2 42.697 89 37 2 12 86 19 107 2.49e-13 70.5
Msa0336980 AT5G40350.1 45.833 72 22 1 12 66 18 89 2.59e-13 69.3
Msa0336980 AT5G35550.2 52.308 65 29 1 25 87 48 112 2.81e-13 70.1
Msa0336980 AT1G25340.3 42.697 89 37 2 12 86 19 107 4.57e-13 70.1
Msa0336980 AT5G26660.2 67.500 40 13 0 28 67 15 54 8.02e-13 69.7
Msa0336980 AT5G52600.1 45.205 73 23 1 12 67 13 85 8.09e-13 67.4
Msa0336980 AT3G12820.2 72.222 36 10 0 30 65 2 37 8.57e-13 67.4
Msa0336980 AT1G68320.1 39.362 94 38 2 12 86 20 113 9.55e-13 68.9
Msa0336980 AT3G48920.1 44.737 76 25 1 12 70 19 94 2.33e-12 67.4
Msa0336980 AT3G53200.1 44.286 70 22 1 12 64 10 79 3.56e-12 66.2
Msa0336980 AT5G52260.1 36.646 161 54 8 12 130 13 167 4.23e-12 66.6
Msa0336980 AT5G59780.3 43.056 72 24 1 12 66 9 80 9.09e-12 65.1
Msa0336980 AT3G46130.1 43.056 72 24 1 12 66 10 81 1.34e-11 65.1
Msa0336980 AT1G66370.1 42.667 75 26 1 10 67 7 81 2.03e-11 64.3
Msa0336980 AT1G66380.1 45.455 66 19 1 8 56 5 70 2.52e-11 61.6
Msa0336980 AT1G66380.2 45.455 66 19 1 8 56 5 70 2.99e-11 60.5
Msa0336980 AT4G25560.1 42.105 76 27 1 12 70 11 86 4.73e-11 63.9

Find 71 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTTGATTTGCAATATT+TGG 0.018630 2_4:-56602826 None:intergenic
TAAAACTCCTTCAAGTTTAT+TGG 0.126920 2_4:-56603280 None:intergenic
TGAAAATGACCTTCCTTTAA+TGG 0.144521 2_4:+56603695 Msa0336980:CDS
TGGCAATGACCTTCCATTTA+TGG 0.163070 2_4:+56603170 Msa0336980:CDS
CTGAGTACGATGTAGAATTT+TGG 0.196447 2_4:+56603832 Msa0336980:CDS
ATGATTTGAGTGAGTGTTTC+TGG 0.210533 2_4:+56603466 Msa0336980:CDS
ATGAATAATGCATCCATTAA+AGG 0.221966 2_4:-56603708 None:intergenic
AGACTGTGAGTGAGAATTTC+TGG 0.229322 2_4:+56603205 Msa0336980:CDS
TGATAGTGACCTTTCTTTCA+TGG 0.283540 2_4:+56602906 Msa0336980:CDS
GACAATCGACTTGCAATATT+AGG 0.293210 2_4:-56603318 None:intergenic
TAGGAAGTGTTTATCATATA+AGG 0.309749 2_4:-56603234 None:intergenic
AGATAGTGAACTCGTAAAAT+TGG 0.317171 2_4:-56603064 None:intergenic
TCCATTTATGGATGCATTCA+TGG 0.319756 2_4:+56603182 Msa0336980:CDS
TTCTTGGTTTCTTCCATTGT+AGG 0.324003 2_4:-56603009 None:intergenic
TATGAATTGTCTATCATATA+TGG 0.327989 2_4:-56602970 None:intergenic
TTTAATGGATGCATTATTCA+TGG 0.332906 2_4:+56603710 Msa0336980:CDS
TCCATGAATGCATCCATAAA+TGG 0.339974 2_4:-56603183 None:intergenic
ATATTTGATTTGCAATATTT+GGG 0.346649 2_4:-56602825 None:intergenic
TCCATTGTAGGGTGATTATG+AGG 0.353338 2_4:-56602997 None:intergenic
AATGGAAGAAGCCAAGAAAA+TGG 0.356008 2_4:+56603539 Msa0336980:CDS
TCTTGGCTTCTTCCATTGTA+AGG 0.373753 2_4:-56603533 None:intergenic
TAACATATTATTCTGCAATA+TGG 0.383165 2_4:-56603857 None:intergenic
GAAGAAGCTAAGAAATTTGA+AGG 0.398720 2_4:+56602781 Msa0336980:intron
AGTTGATTGCTTATGTTACT+AGG 0.399699 2_4:+56600435 Msa0336980:CDS
GACAGTGGACTGACACTATT+GGG 0.400757 2_4:-56603588 None:intergenic
GACAATAATGGATGGAGAAA+AGG 0.412083 2_4:+56600386 Msa0336980:CDS
TTCTTTCATGGAAACATACA+TGG 0.435765 2_4:+56602918 Msa0336980:CDS
TTATTGGCTTCTTCCAATGT+AGG 0.436874 2_4:-56603264 None:intergenic
TCTTGGTTTCTTCCATTGTA+GGG 0.439231 2_4:-56603008 None:intergenic
GTGTAGCTTCTTCACTTTGA+GGG 0.442359 2_4:-56603773 None:intergenic
AGACAGTGGACTGACACTAT+TGG 0.444718 2_4:-56603589 None:intergenic
TCTTCACAACCATCTTCAAA+TGG 0.451942 2_4:+56603609 Msa0336980:CDS
GAAGAAGCCAATAAACTTGA+AGG 0.457233 2_4:+56603273 Msa0336980:CDS
GAAGAAACCAAGAAACTTGA+AGG 0.465125 2_4:+56603018 Msa0336980:CDS
TGGTTTCTCTTCTATAACAA+TGG 0.469688 2_4:+56603629 Msa0336980:CDS
CTTCCATTGTAAGGTGATTG+TGG 0.469769 2_4:-56603524 None:intergenic
CTCCATCCATTATTGTCACA+AGG 0.470399 2_4:-56600380 None:intergenic
CAAGACAATTCGCTTGAAGA+TGG 0.485662 2_4:-56602856 None:intergenic
AGAACCCCTTGTGACAATAA+TGG 0.486193 2_4:+56600374 Msa0336980:CDS
GAAGAGAAACCATTTGAAGA+TGG 0.488612 2_4:-56603618 None:intergenic
TATTGGCTTCTTCCAATGTA+GGG 0.507552 2_4:-56603263 None:intergenic
CTGAGGCCAAATATCAAAAG+AGG 0.509978 2_4:+56600843 Msa0336980:CDS
TGTATGTTTCCATGAAAGAA+AGG 0.512953 2_4:-56602915 None:intergenic
TATATGATAAACACTTCCTA+TGG 0.517871 2_4:+56603237 Msa0336980:CDS
AGTGTAGCTTCTTCACTTTG+AGG 0.547696 2_4:-56603774 None:intergenic
GTGGGAAGAGCTGTAGACTA+AGG 0.551758 2_4:+56600808 Msa0336980:CDS
TTCCTATGGTCACCCTACAT+TGG 0.561733 2_4:+56603251 Msa0336980:CDS
AGACTGTGAGTGAGAATGAC+TGG 0.565227 2_4:+56603733 Msa0336980:CDS
TGCATTCTCTTGCATAACAA+TGG 0.567171 2_4:+56603359 Msa0336980:CDS
CAAGAGAATGCACTTGAAGA+TGG 0.571011 2_4:-56603348 None:intergenic
TCTTCGCAACAATCTTCAAG+TGG 0.571781 2_4:+56603084 Msa0336980:CDS
TTCCAATGTAGGGTGACCAT+AGG 0.573455 2_4:-56603253 None:intergenic
CCATCCATTATTGTCACAAG+GGG 0.574535 2_4:-56600378 None:intergenic
TCCATCCATTATTGTCACAA+GGG 0.575358 2_4:-56600379 None:intergenic
CGAATTGTCTTGCATAACAA+TGG 0.580955 2_4:+56602867 Msa0336980:CDS
TATTCATGTTCATACTCTGT+AGG 0.583585 2_4:-56603801 None:intergenic
CCCCTTGTGACAATAATGGA+TGG 0.587092 2_4:+56600378 Msa0336980:CDS
ATGGATGGAGAAAAGGCACT+TGG 0.598162 2_4:+56600393 Msa0336980:CDS
GAAGAAGCCAAGAAAATGGA+AGG 0.601456 2_4:+56603543 Msa0336980:CDS
TGTGAACTGTCTATCATACA+TGG 0.602200 2_4:-56603495 None:intergenic
GTCACAAGGGGTTCTCACCA+TGG 0.605010 2_4:-56600366 None:intergenic
CCCTCATAATCACCCTACAA+TGG 0.616976 2_4:+56602996 Msa0336980:CDS
TGAGGCCAAATATCAAAAGA+GGG 0.619320 2_4:+56600844 Msa0336980:CDS
CCATTGTAGGGTGATTATGA+GGG 0.619600 2_4:-56602996 None:intergenic
TAAGGTGGATGAACTATCTG+AGG 0.621739 2_4:+56600826 Msa0336980:CDS
TGAATGCATCCATAAATGGA+AGG 0.625406 2_4:-56603179 None:intergenic
ATAATGCATCCATTAAAGGA+AGG 0.636763 2_4:-56603704 None:intergenic
GGAAGAGCTGTAGACTAAGG+TGG 0.649277 2_4:+56600811 Msa0336980:CDS
CCATTGTAAGGTGATTGTGG+AGG 0.656061 2_4:-56603521 None:intergenic
CCTCCACAATCACCTTACAA+TGG 0.657176 2_4:+56603521 Msa0336980:CDS
GAAGATGGTTGTGAAGACAG+TGG 0.731455 2_4:-56603603 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAAATATATTTTTT+TGG - chr2_4:56600610-56600629 None:intergenic 0.0%
!! AAAATATCATAAATTATTGT+TGG + chr2_4:56600521-56600540 Msa0336980:intron 10.0%
!!! ATTAAGAATAATTTTCTTTA+TGG - chr2_4:56600706-56600725 None:intergenic 10.0%
!! TTAATAATTAATGTGTAAAT+TGG + chr2_4:56600721-56600740 Msa0336980:intron 10.0%
!!! ATAATAAGATAATAGTTTTT+CGG + chr2_4:56601195-56601214 Msa0336980:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr2_4:56601244-56601263 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr2_4:56601245-56601264 None:intergenic 10.0%
!! TTAGAAAAATAAATAATCAT+AGG + chr2_4:56601799-56601818 Msa0336980:intron 10.0%
!! TAGAAAAATAAATAATCATA+GGG + chr2_4:56601800-56601819 Msa0336980:intron 10.0%
!!! TTTTAAATTAATTTTCTCAC+AGG + chr2_4:56600638-56600657 Msa0336980:intron 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr2_4:56601168-56601187 None:intergenic 15.0%
!!! TAATAAGATAATAGTTTTTC+GGG + chr2_4:56601196-56601215 Msa0336980:intron 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr2_4:56601530-56601549 Msa0336980:intron 15.0%
!!! CTAATTTGAAATTGTTTATT+CGG - chr2_4:56601783-56601802 None:intergenic 15.0%
!! AGAAAAATAAATAATCATAG+GGG + chr2_4:56601801-56601820 Msa0336980:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr2_4:56602482-56602501 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr2_4:56602481-56602500 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr2_4:56602390-56602409 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr2_4:56602290-56602309 Msa0336980:intron 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + chr2_4:56602325-56602344 Msa0336980:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr2_4:56602481-56602500 Msa0336980:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr2_4:56602482-56602501 Msa0336980:intron 15.0%
!!! TAACCCTATTTTAAATTATT+AGG + chr2_4:56602550-56602569 Msa0336980:intron 15.0%
!!! TCTCCTAATAATTTAAAATA+GGG - chr2_4:56602556-56602575 None:intergenic 15.0%
!! GTTATTTAAATTTGAATCTT+TGG - chr2_4:56602748-56602767 None:intergenic 15.0%
!!! ATATTTGATTTGCAATATTT+GGG - chr2_4:56602828-56602847 None:intergenic 15.0%
!! ATCATAAATTATTGTTGGAT+AGG + chr2_4:56600526-56600545 Msa0336980:intron 20.0%
!! AAACTCTTTGAATTAATACT+CGG + chr2_4:56601092-56601111 Msa0336980:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG - chr2_4:56601557-56601576 None:intergenic 20.0%
!!! AAGTGAAAACACTTTTTTTA+AGG - chr2_4:56602023-56602042 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr2_4:56602419-56602438 Msa0336980:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr2_4:56602420-56602439 Msa0336980:intron 20.0%
!!! CTCTCCTAATAATTTAAAAT+AGG - chr2_4:56602557-56602576 None:intergenic 20.0%
!!! GATATTTGATTTGCAATATT+TGG - chr2_4:56602829-56602848 None:intergenic 20.0%
!!! ACAATTTTAGTGAGAATATT+TGG + chr2_4:56602941-56602960 Msa0336980:CDS 20.0%
!! TATGAATTGTCTATCATATA+TGG - chr2_4:56602973-56602992 None:intergenic 20.0%
! TTTCTTATACCTGCAAATTT+AGG - chr2_4:56600488-56600507 None:intergenic 25.0%
! AAATTTGCAGGTATAAGAAA+AGG + chr2_4:56600488-56600507 Msa0336980:intron 25.0%
! AATACTCCAACAAAAATGAT+TGG - chr2_4:56600571-56600590 None:intergenic 25.0%
! ATCAAACTTCATGAAAAACT+GGG + chr2_4:56600897-56600916 Msa0336980:CDS 25.0%
!! CATCAAATGTCAATGTTTTA+GGG - chr2_4:56601050-56601069 None:intergenic 25.0%
!!! CAATAATGACTTTTGAAGTA+CGG - chr2_4:56601336-56601355 None:intergenic 25.0%
! ATTGTACATACCAAACAAAA+AGG - chr2_4:56601450-56601469 None:intergenic 25.0%
! TAAATTAATAATGTCAGGAC+CGG - chr2_4:56601552-56601571 None:intergenic 25.0%
! ATTATTGTAAACCAGTTGAA+TGG - chr2_4:56601610-56601629 None:intergenic 25.0%
! GTTAAAAATATCAGCTTACT+TGG - chr2_4:56601680-56601699 None:intergenic 25.0%
! TTTGAAAGTTCAATTACAGA+TGG + chr2_4:56601965-56601984 Msa0336980:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr2_4:56602130-56602149 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr2_4:56602131-56602150 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr2_4:56602453-56602472 Msa0336980:intron 25.0%
!!! TGCTTTTTATGATGATCAAA+TGG + chr2_4:56602586-56602605 Msa0336980:intron 25.0%
!! TGAATTTTCATGTGATATAG+TGG - chr2_4:56603142-56603161 None:intergenic 25.0%
!! CATGAAAATTCAGTTTTTGA+TGG + chr2_4:56603150-56603169 Msa0336980:CDS 25.0%
!!! TAGGAAGTGTTTATCATATA+AGG - chr2_4:56603237-56603256 None:intergenic 25.0%
! TATATGATAAACACTTCCTA+TGG + chr2_4:56603237-56603256 Msa0336980:CDS 25.0%
!! TAAAACTCCTTCAAGTTTAT+TGG - chr2_4:56603283-56603302 None:intergenic 25.0%
!! TCGATTTTCATATGATATTG+TGG - chr2_4:56603397-56603416 None:intergenic 25.0%
!! ATAATTTTCATGTGGTATTG+TGG - chr2_4:56603667-56603686 None:intergenic 25.0%
!! TCAAGAACATAATTTTCATG+TGG - chr2_4:56603675-56603694 None:intergenic 25.0%
! ATGAATAATGCATCCATTAA+AGG - chr2_4:56603711-56603730 None:intergenic 25.0%
!! TTTAATGGATGCATTATTCA+TGG + chr2_4:56603710-56603729 Msa0336980:CDS 25.0%
AGTTGATTGCTTATGTTACT+AGG + chr2_4:56600435-56600454 Msa0336980:CDS 30.0%
ATTGCTTATGTTACTAGGTA+TGG + chr2_4:56600440-56600459 Msa0336980:intron 30.0%
!! GTACATCCAATCATTTTTGT+TGG + chr2_4:56600562-56600581 Msa0336980:intron 30.0%
AACAATTCTCTCGAGTTTAA+AGG - chr2_4:56600771-56600790 None:intergenic 30.0%
! AAGTTCCCTCTTTTGATATT+TGG - chr2_4:56600852-56600871 None:intergenic 30.0%
CATCAAACTTCATGAAAAAC+TGG + chr2_4:56600896-56600915 Msa0336980:CDS 30.0%
TTCATGAAAAACTGGGTAAT+AGG + chr2_4:56600904-56600923 Msa0336980:intron 30.0%
AACATATCAACACTCTATCA+TGG + chr2_4:56600931-56600950 Msa0336980:intron 30.0%
! CCATCAAATGTCAATGTTTT+AGG - chr2_4:56601051-56601070 None:intergenic 30.0%
CCTAAAACATTGACATTTGA+TGG + chr2_4:56601048-56601067 Msa0336980:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG + chr2_4:56601217-56601236 Msa0336980:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr2_4:56601226-56601245 None:intergenic 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr2_4:56601437-56601456 Msa0336980:intron 30.0%
CATGATATATGCAAGATTCA+GGG - chr2_4:56601646-56601665 None:intergenic 30.0%
ACATGATATATGCAAGATTC+AGG - chr2_4:56601647-56601666 None:intergenic 30.0%
AAATATCAGCTTACTTGGTA+GGG - chr2_4:56601675-56601694 None:intergenic 30.0%
AAAATATCAGCTTACTTGGT+AGG - chr2_4:56601676-56601695 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr2_4:56602193-56602212 Msa0336980:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr2_4:56602452-56602471 Msa0336980:intron 30.0%
AAGTAGGGATTAAACTTACA+AGG + chr2_4:56602497-56602516 Msa0336980:intron 30.0%
AATGGTTTATATAGTGCAGA+TGG + chr2_4:56602604-56602623 Msa0336980:intron 30.0%
GTGATTCTTTACCTCATTAT+CGG - chr2_4:56602661-56602680 None:intergenic 30.0%
ATAATGAGGTAAAGAATCAC+TGG + chr2_4:56602661-56602680 Msa0336980:intron 30.0%
CTTTATAAAACGCTTCTTCA+AGG - chr2_4:56602694-56602713 None:intergenic 30.0%
AAGAATATTAAGTCTAAGCG+TGG + chr2_4:56602711-56602730 Msa0336980:intron 30.0%
GAAGAAGCTAAGAAATTTGA+AGG + chr2_4:56602781-56602800 Msa0336980:intron 30.0%
TGTATGTTTCCATGAAAGAA+AGG - chr2_4:56602918-56602937 None:intergenic 30.0%
TTCTTTCATGGAAACATACA+TGG + chr2_4:56602918-56602937 Msa0336980:CDS 30.0%
! AAAAACTCCTTCAAGTTTCT+TGG - chr2_4:56603028-56603047 None:intergenic 30.0%
AGATAGTGAACTCGTAAAAT+TGG - chr2_4:56603067-56603086 None:intergenic 30.0%
TGTATGCATCCAAAAAAAGA+AGG - chr2_4:56603443-56603462 None:intergenic 30.0%
! AAAAACTCCTTCCATTTTCT+TGG - chr2_4:56603553-56603572 None:intergenic 30.0%
TGGTTTCTCTTCTATAACAA+TGG + chr2_4:56603629-56603648 Msa0336980:CDS 30.0%
TGAAAATGACCTTCCTTTAA+TGG + chr2_4:56603695-56603714 Msa0336980:CDS 30.0%
ATAATGCATCCATTAAAGGA+AGG - chr2_4:56603707-56603726 None:intergenic 30.0%
TATTCATGTTCATACTCTGT+AGG - chr2_4:56603804-56603823 None:intergenic 30.0%
TCCATCCATTATTGTCACAA+GGG - chr2_4:56600382-56600401 None:intergenic 35.0%
!! GACAATAATGGATGGAGAAA+AGG + chr2_4:56600386-56600405 Msa0336980:CDS 35.0%
TTGGATAGGTATCTCTTACA+AGG + chr2_4:56600540-56600559 Msa0336980:intron 35.0%
ACCTATTCCAACAAAACTCT+AGG + chr2_4:56600663-56600682 Msa0336980:intron 35.0%
!!! TCCTAGAGTTTTGTTGGAAT+AGG - chr2_4:56600667-56600686 None:intergenic 35.0%
! AACTCGAGAGAATTGTTTTC+AGG + chr2_4:56600774-56600793 Msa0336980:intron 35.0%
! ACTCGAGAGAATTGTTTTCA+GGG + chr2_4:56600775-56600794 Msa0336980:intron 35.0%
!! AATTGTTTTCAGGGCTTGAA+AGG + chr2_4:56600784-56600803 Msa0336980:intron 35.0%
TGAGGCCAAATATCAAAAGA+GGG + chr2_4:56600844-56600863 Msa0336980:CDS 35.0%
ATGCTTCAAATGACAATCCA+TGG - chr2_4:56600996-56601015 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG - chr2_4:56601158-56601177 None:intergenic 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr2_4:56601227-56601246 None:intergenic 35.0%
GTACGGTAAATGTAAACAAG+AGG - chr2_4:56601319-56601338 None:intergenic 35.0%
ACTACTGTGTTCATATGCAT+TGG - chr2_4:56601363-56601382 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr2_4:56602054-56602073 None:intergenic 35.0%
!! TTACAAGGTCGCTATTTTAC+AGG + chr2_4:56602512-56602531 Msa0336980:intron 35.0%
!! TACAAGGTCGCTATTTTACA+GGG + chr2_4:56602513-56602532 Msa0336980:intron 35.0%
! CGGTAAATTTGAAGCAATCA+CGG - chr2_4:56602631-56602650 None:intergenic 35.0%
CGTGATTGCTTCAAATTTAC+CGG + chr2_4:56602629-56602648 Msa0336980:intron 35.0%
GTGATTGCTTCAAATTTACC+GGG + chr2_4:56602630-56602649 Msa0336980:intron 35.0%
TGATTGCTTCAAATTTACCG+GGG + chr2_4:56602631-56602650 Msa0336980:intron 35.0%
ATATTAAGTCTAAGCGTGGA+AGG + chr2_4:56602715-56602734 Msa0336980:intron 35.0%
TCTTAGCTTCTTCCAATGTA+GGG - chr2_4:56602774-56602793 None:intergenic 35.0%
TTCTTAGCTTCTTCCAATGT+AGG - chr2_4:56602775-56602794 None:intergenic 35.0%
CGAATTGTCTTGCATAACAA+TGG + chr2_4:56602867-56602886 Msa0336980:CDS 35.0%
! TGATAGTGACCTTTCTTTCA+TGG + chr2_4:56602906-56602925 Msa0336980:CDS 35.0%
TCTTGGTTTCTTCCATTGTA+GGG - chr2_4:56603011-56603030 None:intergenic 35.0%
TTCTTGGTTTCTTCCATTGT+AGG - chr2_4:56603012-56603031 None:intergenic 35.0%
GAAGAAACCAAGAAACTTGA+AGG + chr2_4:56603018-56603037 Msa0336980:CDS 35.0%
TGAATGCATCCATAAATGGA+AGG - chr2_4:56603182-56603201 None:intergenic 35.0%
TCCATTTATGGATGCATTCA+TGG + chr2_4:56603182-56603201 Msa0336980:CDS 35.0%
TCCATGAATGCATCCATAAA+TGG - chr2_4:56603186-56603205 None:intergenic 35.0%
!! TATTGGCTTCTTCCAATGTA+GGG - chr2_4:56603266-56603285 None:intergenic 35.0%
!! TTATTGGCTTCTTCCAATGT+AGG - chr2_4:56603267-56603286 None:intergenic 35.0%
GAAGAAGCCAATAAACTTGA+AGG + chr2_4:56603273-56603292 Msa0336980:CDS 35.0%
!! GACAATCGACTTGCAATATT+AGG - chr2_4:56603321-56603340 None:intergenic 35.0%
TGCATTCTCTTGCATAACAA+TGG + chr2_4:56603359-56603378 Msa0336980:CDS 35.0%
!!! TGTCAACGACCTTCTTTTTT+TGG + chr2_4:56603431-56603450 Msa0336980:CDS 35.0%
ATGATTTGAGTGAGTGTTTC+TGG + chr2_4:56603466-56603485 Msa0336980:CDS 35.0%
TGTGAACTGTCTATCATACA+TGG - chr2_4:56603498-56603517 None:intergenic 35.0%
AATGGAAGAAGCCAAGAAAA+TGG + chr2_4:56603539-56603558 Msa0336980:CDS 35.0%
TCTTCACAACCATCTTCAAA+TGG + chr2_4:56603609-56603628 Msa0336980:CDS 35.0%
GAAGAGAAACCATTTGAAGA+TGG - chr2_4:56603621-56603640 None:intergenic 35.0%
! CTGAGTACGATGTAGAATTT+TGG + chr2_4:56603832-56603851 Msa0336980:CDS 35.0%
AGAACCCCTTGTGACAATAA+TGG + chr2_4:56600374-56600393 Msa0336980:CDS 40.0%
CCATCCATTATTGTCACAAG+GGG - chr2_4:56600381-56600400 None:intergenic 40.0%
CTCCATCCATTATTGTCACA+AGG - chr2_4:56600383-56600402 None:intergenic 40.0%
ATGTTACTAGGTATGGCTGT+TGG + chr2_4:56600447-56600466 Msa0336980:intron 40.0%
CGACAACTACCTAAATTTGC+AGG + chr2_4:56600476-56600495 Msa0336980:intron 40.0%
!! GCAGTATCCTAGAGTTTTGT+TGG - chr2_4:56600673-56600692 None:intergenic 40.0%
TAAGGTGGATGAACTATCTG+AGG + chr2_4:56600826-56600845 Msa0336980:CDS 40.0%
CTGAGGCCAAATATCAAAAG+AGG + chr2_4:56600843-56600862 Msa0336980:CDS 40.0%
AAAAAAAGCCGTACAAGCCA+TGG + chr2_4:56600976-56600995 Msa0336980:intron 40.0%
! ATGACAATCCATGGCTTGTA+CGG - chr2_4:56600987-56601006 None:intergenic 40.0%
! TTTTTACATTGGCCCAAGTC+GGG - chr2_4:56601157-56601176 None:intergenic 40.0%
CTAATTTACGTTGAGTCCCA+AGG + chr2_4:56601385-56601404 Msa0336980:intron 40.0%
CTAACTTCACACCATTCAAC+TGG + chr2_4:56601596-56601615 Msa0336980:intron 40.0%
TTAAATAACCCCCCCTACAT+TGG + chr2_4:56602759-56602778 Msa0336980:intron 40.0%
TTAGCTTCTTCCAATGTAGG+GGG - chr2_4:56602772-56602791 None:intergenic 40.0%
CTTAGCTTCTTCCAATGTAG+GGG - chr2_4:56602773-56602792 None:intergenic 40.0%
CAAGACAATTCGCTTGAAGA+TGG - chr2_4:56602859-56602878 None:intergenic 40.0%
CCATTGTAGGGTGATTATGA+GGG - chr2_4:56602999-56603018 None:intergenic 40.0%
TCCATTGTAGGGTGATTATG+AGG - chr2_4:56603000-56603019 None:intergenic 40.0%
TCTTCGCAACAATCTTCAAG+TGG + chr2_4:56603084-56603103 Msa0336980:CDS 40.0%
TGGCAATGACCTTCCATTTA+TGG + chr2_4:56603170-56603189 Msa0336980:CDS 40.0%
AGACTGTGAGTGAGAATTTC+TGG + chr2_4:56603205-56603224 Msa0336980:CDS 40.0%
CAAGAGAATGCACTTGAAGA+TGG - chr2_4:56603351-56603370 None:intergenic 40.0%
CTTCCATTGTAAGGTGATTG+TGG - chr2_4:56603527-56603546 None:intergenic 40.0%
TCTTGGCTTCTTCCATTGTA+AGG - chr2_4:56603536-56603555 None:intergenic 40.0%
GAAGAAGCCAAGAAAATGGA+AGG + chr2_4:56603543-56603562 Msa0336980:CDS 40.0%
GTGTAGCTTCTTCACTTTGA+GGG - chr2_4:56603776-56603795 None:intergenic 40.0%
AGTGTAGCTTCTTCACTTTG+AGG - chr2_4:56603777-56603796 None:intergenic 40.0%
! CCCCTTGTGACAATAATGGA+TGG + chr2_4:56600378-56600397 Msa0336980:CDS 45.0%
!! ATGGATGGAGAAAAGGCACT+TGG + chr2_4:56600393-56600412 Msa0336980:CDS 45.0%
CTAGGTATGGCTGTTGGAAT+TGG + chr2_4:56600453-56600472 Msa0336980:intron 45.0%
!! TTTTCAGGGCTTGAAAGGTG+TGG + chr2_4:56600789-56600808 Msa0336980:intron 45.0%
! TTTCAGGGCTTGAAAGGTGT+GGG + chr2_4:56600790-56600809 Msa0336980:intron 45.0%
AAATTTGTCCTGTCCCGACT+TGG + chr2_4:56601141-56601160 Msa0336980:intron 45.0%
AATTTGTCCTGTCCCGACTT+GGG + chr2_4:56601142-56601161 Msa0336980:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG - chr2_4:56601404-56601423 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG - chr2_4:56601405-56601424 None:intergenic 45.0%
CGCTGCAACGTAATTCTAAG+AGG + chr2_4:56601410-56601429 Msa0336980:intron 45.0%
TAGCTTCTTCCAATGTAGGG+GGG - chr2_4:56602771-56602790 None:intergenic 45.0%
CCCTCATAATCACCCTACAA+TGG + chr2_4:56602996-56603015 Msa0336980:CDS 45.0%
TTCCTATGGTCACCCTACAT+TGG + chr2_4:56603251-56603270 Msa0336980:CDS 45.0%
TTCCAATGTAGGGTGACCAT+AGG - chr2_4:56603256-56603275 None:intergenic 45.0%
CCATTGTAAGGTGATTGTGG+AGG - chr2_4:56603524-56603543 None:intergenic 45.0%
CCTCCACAATCACCTTACAA+TGG + chr2_4:56603521-56603540 Msa0336980:CDS 45.0%
!! GACAGTGGACTGACACTATT+GGG - chr2_4:56603591-56603610 None:intergenic 45.0%
!! AGACAGTGGACTGACACTAT+TGG - chr2_4:56603592-56603611 None:intergenic 45.0%
GAAGATGGTTGTGAAGACAG+TGG - chr2_4:56603606-56603625 None:intergenic 45.0%
AGACTGTGAGTGAGAATGAC+TGG + chr2_4:56603733-56603752 Msa0336980:CDS 45.0%
!!! ATAAGTAAATTTTTTTTATA+GGG - chr2_4:56602098-56602117 None:intergenic 5.0%
!!! TATAAGTAAATTTTTTTTAT+AGG - chr2_4:56602099-56602118 None:intergenic 5.0%
GTGGGAAGAGCTGTAGACTA+AGG + chr2_4:56600808-56600827 Msa0336980:CDS 50.0%
GGAAGAGCTGTAGACTAAGG+TGG + chr2_4:56600811-56600830 Msa0336980:CDS 50.0%
!! ACCTCATTATCGGTTCTCCC+CGG - chr2_4:56602651-56602670 None:intergenic 50.0%
AGCTTCTTCCAATGTAGGGG+GGG - chr2_4:56602770-56602789 None:intergenic 50.0%
ACCGGGGAGAACCGATAATG+AGG + chr2_4:56602647-56602666 Msa0336980:intron 55.0%
ACATTGGCCCAAGTCGGGAC+AGG - chr2_4:56601152-56601171 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 56600368 56603872 56600368 ID=Msa0336980;Name=Msa0336980
chr2_4 mRNA 56600368 56603872 56600368 ID=Msa0336980-mRNA-1;Parent=Msa0336980;Name=Msa0336980-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|0|0|3|0|429
chr2_4 exon 56600368 56600456 56600368 ID=Msa0336980-mRNA-1:exon:17298;Parent=Msa0336980-mRNA-1
chr2_4 exon 56600806 56600918 56600806 ID=Msa0336980-mRNA-1:exon:17299;Parent=Msa0336980-mRNA-1
chr2_4 exon 56602785 56603872 56602785 ID=Msa0336980-mRNA-1:exon:17300;Parent=Msa0336980-mRNA-1
chr2_4 CDS 56600368 56600456 56600368 ID=Msa0336980-mRNA-1:cds;Parent=Msa0336980-mRNA-1
chr2_4 CDS 56600806 56600918 56600806 ID=Msa0336980-mRNA-1:cds;Parent=Msa0336980-mRNA-1
chr2_4 CDS 56602785 56603872 56602785 ID=Msa0336980-mRNA-1:cds;Parent=Msa0336980-mRNA-1
Gene Sequence

>Msa0336980

ATGGTGAGAACCCCTTGTGACAATAATGGATGGAGAAAAGGCACTTGGACACATGAAGAAGACAAAAAGTTGATTGCTTATGTTACTAGGTGTGGGAAGAGCTGTAGACTAAGGTGGATGAACTATCTGAGGCCAAATATCAAAAGAGGGAACTTTAATCAACAAGAAGAAGAGATTATCATCAAACTTCATGAAAAACTGGAAGCTAAGAAATTTGAAGGAGTTTTAGAGAAAAACAATGACCCAAATATTGCAAATCAAATATCTTCACAACCATCTTCAAGCGAATTGTCTTGCATAACAATGGACACTGCAATTCTTGATGATAGTGACCTTTCTTTCATGGAAACATACATGGACAATTTTAGTGAGAATATTTGGACAGAGCCATATATGATAGACAATTCATATGTCCCTCATAATCACCCTACAATGGAAGAAACCAAGAAACTTGAAGGAGTTTTTGAGAACAACATCGATGCCAATTTTACGAGTTCACTATCTTCGCAACAATCTTCAAGTGGATTCTCTTGCATAACAACAGAAAATTTAGCTTCCACTATATCACATGAAAATTCAGTTTTTGATGGCAATGACCTTCCATTTATGGATGCATTCATGGAGACTGTGAGTGAGAATTTCTGGACTGAGCCTTATATGATAAACACTTCCTATGGTCACCCTACATTGGAAGAAGCCAATAAACTTGAAGGAGTTTTAGAGAGCAATAATGATCCTAATATTGCAAGTCGATTGTCTTCACAACCATCTTCAAGTGCATTCTCTTGCATAACAATGGATACTGCTTCTGCCACAATATCATATGAAAATCGAATTCTTGATGACAATGTCAACGACCTTCTTTTTTTGGATGCATACATAGATGATTTGAGTGAGTGTTTCTGGTCAGAGCCATGTATGATAGACAGTTCACAAGTCCTCCACAATCACCTTACAATGGAAGAAGCCAAGAAAATGGAAGGAGTTTTTGAGTACAACATTGATCCCAATAGTGTCAGTCCACTGTCTTCACAACCATCTTCAAATGGTTTCTCTTCTATAACAATGGAAAATGTTACTTCCACAATACCACATGAAAATTATGTTCTTGATGAAAATGACCTTCCTTTAATGGATGCATTATTCATGGAGACTGTGAGTGAGAATGACTGGATAAACAGTTTTTATGTCCCTCAAAGTGAAGAAGCTACACTATTTCCTACAGAGTATGAACATGAATACTTTAGTTCTGAGTACGATGTAGAATTTTGGAGCCATATTGCAGAATAA
Protein sequence

>Msa0336980

MVRTPCDNNGWRKGTWTHEEDKKLIAYVTRCGKSCRLRWMNYLRPNIKRGNFNQQEEEIIIKLHEKLEAKKFEGVLEKNNDPNIANQISSQPSSSELSCITMDTAILDDSDLSFMETYMDNFSENIWTEPYMIDNSYVPHNHPTMEETKKLEGVFENNIDANFTSSLSSQQSSSGFSCITTENLASTISHENSVFDGNDLPFMDAFMETVSENFWTEPYMINTSYGHPTLEEANKLEGVLESNNDPNIASRLSSQPSSSAFSCITMDTASATISYENRILDDNVNDLLFLDAYIDDLSECFWSEPCMIDSSQVLHNHLTMEEAKKMEGVFEYNIDPNSVSPLSSQPSSNGFSSITMENVTSTIPHENYVLDENDLPLMDALFMETVSENDWINSFYVPQSEEATLFPTEYEHEYFSSEYDVEFWSHIAE*