AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650120 MtrunA17_Chr4g0042111 95.196 562 27 0 1 562 1 562 0.0 1126
Msa0650120 MtrunA17_Chr7g0237001 56.458 542 233 2 22 562 14 553 0.0 653
Msa0650120 MtrunA17_Chr7g0237041 56.458 542 233 2 22 562 14 553 0.0 653
Msa0650120 MtrunA17_Chr7g0236991 56.458 542 233 2 22 562 14 553 0.0 653
Msa0650120 MtrunA17_Chr7g0237081 56.458 542 233 2 22 562 14 553 0.0 653
Msa0650120 MtrunA17_Chr7g0237051 56.458 542 233 2 22 562 14 553 0.0 653
Msa0650120 MtrunA17_Chr3g0105071 56.093 558 241 3 7 562 2 557 0.0 649
Msa0650120 MtrunA17_Chr5g0425371 55.373 549 241 3 16 562 7 553 0.0 645
Msa0650120 MtrunA17_Chr4g0024691 56.545 550 236 2 14 562 14 561 0.0 645
Msa0650120 MtrunA17_Chr6g0451711 54.645 549 247 2 15 562 10 557 0.0 642
Msa0650120 MtrunA17_Chr5g0431571 56.307 547 235 3 18 562 5 549 0.0 642
Msa0650120 MtrunA17_Chr3g0082691 54.955 555 246 3 10 562 1 553 0.0 640
Msa0650120 MtrunA17_Chr6g0465911 54.578 557 247 3 7 562 2 553 0.0 638
Msa0650120 MtrunA17_Chr6g0466051 54.399 557 248 3 7 562 2 553 0.0 635
Msa0650120 MtrunA17_Chr5g0431651 54.463 549 247 3 16 562 5 552 0.0 631
Msa0650120 MtrunA17_Chr6g0465441 52.727 550 256 3 15 562 6 553 0.0 624
Msa0650120 MtrunA17_Chr7g0237011 57.959 490 206 0 73 562 9 498 0.0 613
Msa0650120 MtrunA17_Chr7g0236961 57.959 490 206 0 73 562 9 498 0.0 613
Msa0650120 MtrunA17_Chr6g0465851 55.000 520 231 2 44 562 1 518 0.0 603
Msa0650120 MtrunA17_Chr2g0319041 45.552 562 292 10 8 562 3 557 6.37e-176 508
Msa0650120 MtrunA17_Chr7g0236971 57.606 401 170 0 162 562 1 401 8.71e-175 499
Msa0650120 MtrunA17_Chr8g0336181 46.377 552 285 8 18 562 9 556 9.58e-173 500
Msa0650120 MtrunA17_Chr2g0319051 45.946 518 272 7 49 562 1 514 1.20e-165 481
Msa0650120 MtrunA17_Chr6g0465981 56.878 378 157 3 7 383 2 374 3.09e-154 446
Msa0650120 MtrunA17_Chr6g0465871 56.878 378 157 3 7 383 2 374 3.09e-154 446
Msa0650120 MtrunA17_Chr6g0466081 56.878 378 157 3 7 383 2 374 3.09e-154 446
Msa0650120 MtrunA17_Chr7g0236951 60.436 321 125 1 63 383 1 319 1.38e-141 412
Msa0650120 MtrunA17_Chr6g0466111 57.771 341 141 2 44 383 1 339 2.10e-141 412
Msa0650120 MtrunA17_Chr7g0237031 60.436 321 125 1 63 383 1 319 2.92e-141 411
Msa0650120 MtrunA17_Chr6g0465931 57.478 341 142 2 44 383 1 339 4.03e-140 409
Msa0650120 MtrunA17_Chr4g0008621 46.539 419 212 6 8 416 2 418 8.64e-135 399
Msa0650120 MtrunA17_Chr4g0023911 37.906 554 337 5 7 559 31 578 1.83e-124 377
Msa0650120 MtrunA17_Chr2g0310331 38.321 548 323 9 18 561 49 585 2.67e-116 357
Msa0650120 MtrunA17_Chr2g0319071 38.791 513 262 10 51 559 22 486 2.33e-115 351
Msa0650120 MtrunA17_Chr8g0357411 36.182 550 341 5 15 562 48 589 1.61e-112 347
Msa0650120 MtrunA17_Chr2g0323131 36.653 502 303 6 41 539 55 544 4.94e-109 337
Msa0650120 MtrunA17_Chr2g0323151 38.147 464 274 5 79 539 6 459 2.59e-105 325
Msa0650120 MtrunA17_Chr5g0445511 61.233 227 88 0 158 384 2 228 4.52e-101 305
Msa0650120 MtrunA17_Chr6g0466031 50.385 260 129 0 303 562 1 260 2.07e-91 281
Msa0650120 MtrunA17_Chr4g0048911 34.151 489 308 9 58 539 60 541 9.86e-90 287
Msa0650120 MtrunA17_Chr2g0310401 37.150 428 266 2 136 561 5 431 3.74e-89 281
Msa0650120 MtrunA17_Chr4g0048921 36.134 476 295 5 72 542 82 553 4.93e-89 285
Msa0650120 MtrunA17_Chr7g0237061 49.231 260 109 2 303 562 1 237 1.44e-82 257
Msa0650120 MtrunA17_Chr7g0237071 60.825 194 76 0 73 266 9 202 2.71e-78 246
Msa0650120 MtrunA17_Chr2g0280581 29.480 519 350 9 50 558 6 518 4.63e-78 255
Msa0650120 MtrunA17_Chr2g0319081 38.393 336 187 8 230 562 109 427 2.49e-73 240
Msa0650120 MtrunA17_Chr2g0319081 40.580 138 77 4 1 136 1 135 7.43e-22 98.6
Msa0650120 MtrunA17_Chr3g0108941 29.234 496 334 8 50 535 6 494 9.64e-73 241
Msa0650120 MtrunA17_Chr3g0108981 30.426 470 308 8 79 535 6 469 2.96e-72 239
Msa0650120 MtrunA17_Chr3g0108961 30.426 470 308 8 79 535 6 469 2.96e-72 239
Msa0650120 MtrunA17_Chr3g0109001 29.839 496 331 9 50 535 6 494 7.86e-72 239
Msa0650120 MtrunA17_Chr3g0105691 29.389 524 346 12 44 552 31 545 9.73e-71 237
Msa0650120 MtrunA17_Chr3g0109011 30.043 466 314 7 79 535 6 468 2.56e-69 231
Msa0650120 MtrunA17_Chr3g0109021 29.459 499 328 11 50 535 6 493 2.62e-69 232
Msa0650120 MtrunA17_Chr3g0109031 29.032 496 334 10 50 535 6 493 3.03e-69 232
Msa0650120 MtrunA17_Chr3g0099031 30.382 497 326 11 50 535 6 493 2.43e-68 229
Msa0650120 MtrunA17_Chr6g0466021 53.171 205 90 3 7 210 2 201 4.25e-68 219
Msa0650120 MtrunA17_Chr3g0108991 29.032 496 334 10 50 535 6 493 5.59e-68 228
Msa0650120 MtrunA17_Chr3g0108951 29.032 496 334 10 50 535 6 493 5.59e-68 228
Msa0650120 MtrunA17_Chr3g0108971 30.193 467 312 9 79 535 6 468 3.50e-67 226
Msa0650120 MtrunA17_Chr6g0477111 29.253 482 333 6 79 552 6 487 5.85e-67 225
Msa0650120 MtrunA17_Chr7g0237021 51.744 172 83 0 391 562 1 172 1.46e-59 195
Msa0650120 MtrunA17_Chr7g0236941 51.744 172 83 0 391 562 1 172 1.46e-59 195
Msa0650120 MtrunA17_Chr5g0445501 50.000 172 86 0 391 562 1 172 2.22e-58 192
Msa0650120 MtrunA17_Chr6g0477121 29.529 403 277 5 139 535 10 411 4.74e-58 199
Msa0650120 MtrunA17_Chr7g0217361 35.667 300 192 1 261 559 8 307 3.90e-56 191
Msa0650120 MtrunA17_Chr6g0465881 48.837 172 88 0 391 562 1 172 3.39e-55 184
Msa0650120 MtrunA17_Chr6g0465941 48.837 172 88 0 391 562 1 172 3.97e-55 183
Msa0650120 MtrunA17_Chr6g0466121 48.837 172 88 0 391 562 1 172 3.97e-55 183
Msa0650120 MtrunA17_Chr6g0465991 48.837 172 88 0 391 562 1 172 3.97e-55 183
Msa0650120 MtrunA17_Chr6g0466091 48.837 172 88 0 391 562 1 172 3.97e-55 183
Msa0650120 MtrunA17_Chr8g0357231 34.363 259 168 2 304 561 1 258 1.01e-46 164
Msa0650120 MtrunA17_Chr7g0236921 48.101 158 78 1 409 562 1 158 4.74e-46 159
Msa0650120 MtrunA17_Chr8g0357221 38.400 250 146 3 15 263 48 290 2.70e-43 156
Msa0650120 MtrunA17_Chr7g0236931 46.104 154 80 1 409 562 1 151 4.23e-42 148
Msa0650120 MtrunA17_Chr7g0233861 51.111 135 57 1 202 336 33 158 4.81e-42 149
Msa0650120 MtrunA17_Chr2g0310121 28.265 513 317 18 78 553 277 775 3.18e-39 153
Msa0650120 MtrunA17_Chr3g0101681 28.517 526 309 21 79 558 279 783 1.51e-37 148
Msa0650120 MtrunA17_Chr7g0236981 48.760 121 59 2 22 141 14 132 1.08e-33 125
Msa0650120 MtrunA17_Chr5g0445401 59.140 93 36 2 173 263 2 94 8.63e-28 107
Msa0650120 MtrunA17_Chr3g0082711 42.241 116 50 1 447 562 1 99 3.13e-23 94.4
Msa0650120 MtrunA17_Chr7g0218001 28.296 311 178 8 65 348 335 627 6.26e-23 103
Msa0650120 MtrunA17_Chr7g0217351 30.412 194 129 3 74 264 83 273 4.43e-22 97.1
Msa0650120 MtrunA17_Chr5g0445521 46.939 98 49 2 7 103 2 97 4.57e-22 91.3
Msa0650120 MtrunA17_Chr7g0259881 26.241 282 180 7 65 319 218 498 9.64e-22 99.4
Msa0650120 MtrunA17_Chr2g0281651 24.825 286 204 7 239 519 43 322 3.39e-17 84.0
Msa0650120 MtrunA17_Chr2g0310411 42.241 116 58 5 21 136 57 163 1.15e-16 77.8
Msa0650120 MtrunA17_Chr7g0218041 30.290 241 143 6 124 340 1 240 1.55e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650120 AT5G23960.2 42.883 548 307 4 17 562 2 545 4.18e-157 460
Msa0650120 AT5G23960.1 42.909 550 306 5 17 562 2 547 1.22e-155 457
Msa0650120 AT3G14490.1 40.143 558 323 6 11 562 49 601 6.82e-141 421
Msa0650120 AT1G70080.1 37.590 556 337 7 11 558 54 607 1.74e-129 392
Msa0650120 AT3G14520.1 36.197 547 340 4 21 562 62 604 4.38e-127 385
Msa0650120 AT3G14540.1 36.563 547 338 4 21 562 59 601 5.48e-127 385
Msa0650120 AT1G31950.1 35.846 544 340 4 24 562 67 606 1.24e-125 382
Msa0650120 AT1G31950.3 35.780 545 340 5 24 562 67 607 1.96e-124 379
Msa0650120 AT3G32030.1 36.964 560 341 7 11 562 49 604 1.41e-123 376
Msa0650120 AT5G44630.1 37.828 534 324 6 32 559 23 554 8.79e-120 365
Msa0650120 AT3G29410.1 35.832 547 340 7 21 562 63 603 7.45e-119 364
Msa0650120 AT1G33750.1 34.813 563 360 4 2 562 46 603 8.75e-119 364
Msa0650120 AT3G29410.2 35.586 503 315 5 63 562 2 498 1.65e-111 342
Msa0650120 AT4G20200.1 36.207 522 327 4 45 562 85 604 4.24e-109 339
Msa0650120 AT4G15870.1 34.173 556 344 8 10 558 54 594 2.71e-108 337
Msa0650120 AT4G20210.1 32.092 564 373 5 3 562 43 600 5.37e-107 333
Msa0650120 AT4G16730.1 32.703 529 334 7 48 562 19 539 1.37e-105 328
Msa0650120 AT4G13300.1 35.460 533 336 5 32 559 22 551 1.42e-105 328
Msa0650120 AT4G16730.2 32.727 495 320 4 79 562 1 493 7.49e-103 319
Msa0650120 AT3G14540.2 36.865 453 278 3 21 469 59 507 7.57e-103 320
Msa0650120 AT4G20230.2 34.211 532 343 6 32 558 84 613 3.78e-102 321
Msa0650120 AT4G20230.1 34.211 532 343 6 32 558 72 601 5.62e-102 320
Msa0650120 AT4G13280.2 35.460 533 336 5 32 559 22 551 1.29e-101 318
Msa0650120 AT3G29190.1 33.581 539 344 6 32 562 69 601 2.04e-101 319
Msa0650120 AT2G23230.2 34.307 548 351 8 6 546 39 584 1.01e-100 317
Msa0650120 AT1G31950.2 36.018 447 277 4 24 465 67 509 8.76e-99 310
Msa0650120 AT2G23230.1 34.124 548 347 9 6 546 39 579 9.08e-99 312
Msa0650120 AT1G48800.1 32.911 553 362 6 12 558 53 602 6.21e-98 310
Msa0650120 AT2G24210.1 32.810 573 344 13 13 562 36 590 1.40e-96 306
Msa0650120 AT3G25820.1 31.325 581 361 12 5 562 29 594 1.67e-96 306
Msa0650120 AT3G25830.1 31.325 581 361 12 5 562 29 594 1.67e-96 306
Msa0650120 AT3G29110.1 32.959 534 352 5 29 558 62 593 2.20e-96 306
Msa0650120 AT1G66020.1 33.710 531 346 4 32 558 66 594 5.28e-96 305
Msa0650120 AT4G16740.1 32.671 554 347 11 21 562 25 564 1.69e-95 302
Msa0650120 AT1G61680.1 33.607 488 310 6 58 539 77 556 5.30e-92 293
Msa0650120 AT1G61680.2 33.402 488 304 7 58 539 77 549 3.66e-90 288
Msa0650120 AT4G13280.1 33.959 533 314 7 32 559 22 521 3.82e-90 287
Msa0650120 AT3G25810.1 32.082 586 353 16 5 562 29 597 8.89e-90 288
Msa0650120 AT1G48820.1 31.868 546 317 10 21 558 62 560 6.96e-80 261
Msa0650120 AT5G48110.1 38.776 343 205 5 221 562 1 339 8.79e-79 251
Msa0650120 AT3G25820.2 33.741 409 246 7 5 399 29 426 1.03e-71 236
Msa0650120 AT4G16740.2 35.544 377 224 7 21 387 25 392 7.87e-70 230
Msa0650120 AT1G66020.2 36.103 349 217 4 32 376 66 412 9.61e-68 226
Msa0650120 AT3G25820.4 35.838 346 197 7 5 336 29 363 1.15e-61 209
Msa0650120 AT3G25820.3 35.838 346 197 7 5 336 29 363 1.15e-61 209
Msa0650120 AT4G16740.4 37.730 326 184 7 21 336 25 341 7.45e-61 206
Msa0650120 AT4G16740.3 37.730 326 184 7 21 336 25 341 7.45e-61 206
Msa0650120 AT1G79460.1 24.409 508 341 16 78 556 276 769 2.12e-29 124
Msa0650120 AT1G61120.1 22.649 521 365 13 65 559 273 781 7.09e-27 116
Msa0650120 AT4G02780.1 30.466 279 162 8 65 314 320 595 2.41e-24 108

Find 111 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATAATTATGTTGAAAA+TGG 0.157650 4_3:+56911686 Msa0650120:CDS
AAGCAAATTGAAATCTAATT+TGG 0.157846 4_3:-56912530 None:intergenic
AGATGAAGCATTGACAATTT+TGG 0.158357 4_3:-56913494 None:intergenic
GATGATATATATGATGTTTA+TGG 0.206526 4_3:+56912848 Msa0650120:CDS
GAGAAATCGGAGTTGGTATT+AGG 0.224064 4_3:-56911220 None:intergenic
ATTCAATTGCACTTGTCTTT+AGG 0.255161 4_3:+56911735 Msa0650120:CDS
CAAATTACCACCCCAACATT+TGG 0.286981 4_3:+56911254 Msa0650120:CDS
AAATTACCACCCCAACATTT+GGG 0.288674 4_3:+56911255 Msa0650120:CDS
CCAAGACATATTGAATAAAA+AGG 0.295172 4_3:-56911282 None:intergenic
TGAAGTCCCTTTACTCATAT+TGG 0.300711 4_3:-56913927 None:intergenic
GTCATTCTTTGTTGATCCTT+GGG 0.305154 4_3:-56913877 None:intergenic
GATTGATTCAATCCAACGTT+TGG 0.313958 4_3:+56911613 Msa0650120:CDS
TCAATATGTCTTGGAACCTT+TGG 0.327628 4_3:+56911291 Msa0650120:CDS
AGAAATCGGAGTTGGTATTA+GGG 0.328348 4_3:-56911219 None:intergenic
TGTCATTCTTTGTTGATCCT+TGG 0.335528 4_3:-56913878 None:intergenic
GAATAGTTGAAGCTTACTTT+TGG 0.351708 4_3:+56912744 Msa0650120:CDS
GCTCTTGGAATAGTAAATTC+TGG 0.365262 4_3:+56913388 Msa0650120:CDS
TTTGTGCTTGATTACCTCAT+TGG 0.372285 4_3:-56913548 None:intergenic
CACTTGTCTTTAGGTTACTA+AGG 0.384876 4_3:+56911744 Msa0650120:CDS
GCCATGTACTCTTCTATTGT+TGG 0.400220 4_3:-56913367 None:intergenic
TTTGGATGTTTATGAAGAAA+TGG 0.403778 4_3:+56913067 Msa0650120:CDS
ATTGATTCAATCCAACGTTT+GGG 0.408878 4_3:+56911614 Msa0650120:CDS
CAATGTCAATTTGAGTGAGC+TGG 0.411344 4_3:-56914053 None:intergenic
CTCAATACTCTGTTGGTAGA+AGG 0.414840 4_3:+56912789 Msa0650120:CDS
CAAGAACTTGCCTAGGCTAC+TGG 0.415662 4_3:+56912444 Msa0650120:CDS
GCATTACATTTCCACTTATG+AGG 0.423418 4_3:+56912471 Msa0650120:CDS
TCCATGTCCAATATGAGTAA+AGG 0.424065 4_3:+56913920 Msa0650120:exon
GCCACACATATGAGGATTCA+TGG 0.435188 4_3:+56912304 Msa0650120:CDS
TCAAATTAGCTTCCCTCAAA+GGG 0.439126 4_3:-56911592 None:intergenic
AACAACATCCTTCGTTGGAA+TGG 0.440069 4_3:+56913426 Msa0650120:CDS
CTCCGATTTCTCTAGACGTT+CGG 0.441215 4_3:+56911231 Msa0650120:CDS
CCATGTCCAATATGAGTAAA+GGG 0.444601 4_3:+56913921 Msa0650120:exon
CCCTTTACTCATATTGGACA+TGG 0.445169 4_3:-56913921 None:intergenic
TGCCGAACGTCTAGAGAAAT+CGG 0.450185 4_3:-56911233 None:intergenic
ATAGAAGAGTACATGGCTCT+TGG 0.456178 4_3:+56913373 Msa0650120:CDS
ACTATTCTGTTGCGAGCAAA+AGG 0.456530 4_3:-56912728 None:intergenic
AGAGGCTTTGGCACTTCAGT+TGG 0.462451 4_3:-56913783 None:intergenic
ACAACATCCTTCGTTGGAAT+GGG 0.463666 4_3:+56913427 Msa0650120:CDS
ATTGATGTGCTTTATAAAGA+TGG 0.464933 4_3:+56913837 Msa0650120:CDS
CATACTTTACTGAGGCTCAA+TGG 0.470064 4_3:+56913326 Msa0650120:CDS
CTCACTCAAATTGACATTGA+AGG 0.474421 4_3:+56914057 Msa0650120:three_prime_UTR
AAAATGTCACAAACCCTTTG+AGG 0.477504 4_3:+56911579 Msa0650120:CDS
AAACAACATCAGAAAGAAGT+TGG 0.478105 4_3:+56912556 Msa0650120:CDS
TGTATGAAGCCACACATATG+AGG 0.482529 4_3:+56912296 Msa0650120:CDS
ATCAAATTAGCTTCCCTCAA+AGG 0.485801 4_3:-56911593 None:intergenic
ACTCGCATAAGGAGAGGCTT+TGG 0.486941 4_3:-56913795 None:intergenic
ATCTAAAATTGCTAGACTCA+TGG 0.490115 4_3:+56913513 Msa0650120:CDS
GAGCCTCAGTAAAGTATGCC+TGG 0.491242 4_3:-56913321 None:intergenic
CAAGACAAGTCACAAATGCT+TGG 0.491285 4_3:+56913733 Msa0650120:CDS
TGCACAATAGATGAAAAGAT+TGG 0.497980 4_3:+56913297 Msa0650120:intron
CAATGTCATGCTCAAAATGA+TGG 0.500528 4_3:-56911643 None:intergenic
AACTTCAAAGAAACACTTGT+TGG 0.503713 4_3:+56912250 Msa0650120:CDS
TTCTTCATAAACATCCAAAA+CGG 0.505524 4_3:-56913063 None:intergenic
AGAGGGATCTTCCTCATAAG+TGG 0.512911 4_3:-56912482 None:intergenic
TAATGCCTTGCCAGTAGCCT+AGG 0.520942 4_3:-56912454 None:intergenic
AAATGTCACAAACCCTTTGA+GGG 0.523712 4_3:+56911580 Msa0650120:CDS
ATTGAGTGGTCATCATTTCA+AGG 0.523890 4_3:-56912369 None:intergenic
TCGGAGTTGGTATTAGGGGT+TGG 0.524425 4_3:-56911214 None:intergenic
GAAATCGGAGTTGGTATTAG+GGG 0.527233 4_3:-56911218 None:intergenic
TTTGAGCCTCAATACTCTGT+TGG 0.527980 4_3:+56912782 Msa0650120:CDS
TAGCAAAATTTCATGTATTG+TGG 0.530446 4_3:-56913035 None:intergenic
ATCATCAATTACTGAGGCCA+AGG 0.530914 4_3:-56912831 None:intergenic
ACAAATTGAGAACTCGCATA+AGG 0.532358 4_3:-56913806 None:intergenic
TCACTCAAATTGACATTGAA+GGG 0.539955 4_3:+56914058 Msa0650120:three_prime_UTR
AAGAAGTTCAAGAATGAGCA+AGG 0.540053 4_3:+56912226 Msa0650120:CDS
ATCACAACAACATCCTTCGT+TGG 0.542322 4_3:+56913421 Msa0650120:CDS
ATAGATGAAAAGATTGGTCC+AGG 0.544707 4_3:+56913303 Msa0650120:intron
ACAAGTCACAAATGCTTGGA+AGG 0.546592 4_3:+56913737 Msa0650120:CDS
AATGACCAAGGTGATATCCT+TGG 0.547258 4_3:+56912814 Msa0650120:CDS
TTTGAGCAAGAGAGAGGGCA+TGG 0.551451 4_3:+56913642 Msa0650120:CDS
AGACAAGTGCAATTGAATGA+AGG 0.552478 4_3:-56911730 None:intergenic
TAGGTGGGATATAAGTTGCA+TGG 0.561499 4_3:+56913004 Msa0650120:intron
AGCAAAGTTGCATCATGAGA+GGG 0.572891 4_3:-56912499 None:intergenic
AATTAGTTTGAGCAAGAGAG+AGG 0.573171 4_3:+56913636 Msa0650120:intron
GGATGATATTGTTTCCAATG+AGG 0.573519 4_3:+56913534 Msa0650120:CDS
AACACTTGTTGGTGATGTTG+AGG 0.576884 4_3:+56912261 Msa0650120:CDS
ACACTTGTTGGTGATGTTGA+GGG 0.577847 4_3:+56912262 Msa0650120:CDS
TGAAGAAATGGAGCAAGAGA+TGG 0.580004 4_3:+56913079 Msa0650120:CDS
CACTCTTCAAGAACTTGCCT+AGG 0.581377 4_3:+56912437 Msa0650120:CDS
ATTACCACCCCAACATTTGG+GGG 0.583067 4_3:+56911257 Msa0650120:CDS
AATTACCACCCCAACATTTG+GGG 0.585116 4_3:+56911256 Msa0650120:CDS
ACCAACAATAGAAGAGTACA+TGG 0.590550 4_3:+56913366 Msa0650120:CDS
TCCATGAATCCTCATATGTG+TGG 0.591257 4_3:-56912305 None:intergenic
ATTAGTTTGAGCAAGAGAGA+GGG 0.599571 4_3:+56913637 Msa0650120:intron
CTTCTACCAACAGAGTATTG+AGG 0.601314 4_3:-56912788 None:intergenic
TAGCAAAGTTGCATCATGAG+AGG 0.612571 4_3:-56912500 None:intergenic
GGGATGCATTGCTACAGAAG+AGG 0.614970 4_3:+56913447 Msa0650120:CDS
GAGCAAGAGATGGTCAAGGA+AGG 0.615004 4_3:+56913089 Msa0650120:CDS
CTAGGCAAGTTCTTGAAGAG+TGG 0.622912 4_3:-56912436 None:intergenic
TGCTTGGAAGGATACAAATG+AGG 0.623496 4_3:+56913749 Msa0650120:CDS
ACGTCTAGAGAAATCGGAGT+TGG 0.629425 4_3:-56911227 None:intergenic
AATGCATCCCATTCCAACGA+AGG 0.632549 4_3:-56913434 None:intergenic
GATGGTATAATCCCAAACGT+TGG 0.633632 4_3:-56911625 None:intergenic
ACATATGAGGATTCATGGAG+AGG 0.637251 4_3:+56912309 Msa0650120:CDS
TTACCACCCCAACATTTGGG+GGG 0.640939 4_3:+56911258 Msa0650120:CDS
TTTAGGTTACTAAGGCAACA+AGG 0.641189 4_3:+56911752 Msa0650120:CDS
AAATTAATCATAGCTTAAAG+CGG 0.641455 4_3:+56912413 Msa0650120:CDS
GGTCATCATTTCAAGGTGTG+AGG 0.643197 4_3:-56912362 None:intergenic
TGAGGCCAAGGATATCACCT+TGG 0.643385 4_3:-56912819 None:intergenic
GATTGCTACACTAACTCCCA+AGG 0.653620 4_3:+56913861 Msa0650120:CDS
AAGAAAAGGACTCAATTGAG+TGG 0.658799 4_3:-56912383 None:intergenic
AATGGAGCAAGAGATGGTCA+AGG 0.660378 4_3:+56913085 Msa0650120:CDS
TTGAGAACTCGCATAAGGAG+AGG 0.660485 4_3:-56913801 None:intergenic
ACTTGCCTAGGCTACTGGCA+AGG 0.666735 4_3:+56912449 Msa0650120:CDS
CATGTAGCACTCAATAGCAG+AGG 0.671786 4_3:-56913667 None:intergenic
ATATATATCATCAATTACTG+AGG 0.671981 4_3:-56912837 None:intergenic
GGTCCAGGCATACTTTACTG+AGG 0.678982 4_3:+56913318 Msa0650120:CDS
ATAGTAGTATAAGATGCACA+AGG 0.683091 4_3:-56913961 None:intergenic
TAGTAGTATAAGATGCACAA+GGG 0.706297 4_3:-56913960 None:intergenic
TGGTAGAAGGATAATGACCA+AGG 0.706697 4_3:+56912802 Msa0650120:CDS
GAGTGCTACATGAATGAACA+TGG 0.715393 4_3:+56913678 Msa0650120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAAATCACATAATT+CGG - chr4_3:56912007-56912026 None:intergenic 10.0%
!!! TGATTTTTTAAAATTATTAG+TGG + chr4_3:56912014-56912033 Msa0650120:intron 10.0%
!! ACAAAATTAAAATGATTAAA+TGG + chr4_3:56912149-56912168 Msa0650120:intron 10.0%
!!! AATATTGAACTATTTTTTTA+TGG + chr4_3:56912943-56912962 Msa0650120:intron 10.0%
!! TTTAATTCAAATTAATTAAG+AGG - chr4_3:56912980-56912999 None:intergenic 10.0%
!!! TTAATTTGAATTAAAATTCT+AGG + chr4_3:56912985-56913004 Msa0650120:intron 10.0%
!!! TTTGTTTTCTTTAATGAATT+AGG + chr4_3:56912672-56912691 Msa0650120:intron 15.0%
!!! AAGAATTTTTACTTCATTTT+TGG - chr4_3:56913138-56913157 None:intergenic 15.0%
!! TAGGTTATATATATTACCAA+AGG - chr4_3:56911310-56911329 None:intergenic 20.0%
!!! AGTAAAATTTTGTGACAATT+GGG - chr4_3:56911472-56911491 None:intergenic 20.0%
!! CACAATAATTATGTTGAAAA+TGG + chr4_3:56911686-56911705 Msa0650120:CDS 20.0%
!!! TTAATTTTTGTAGCAAGAAA+AGG - chr4_3:56912400-56912419 None:intergenic 20.0%
!! AAATTAATCATAGCTTAAAG+CGG + chr4_3:56912413-56912432 Msa0650120:CDS 20.0%
!! AAGCAAATTGAAATCTAATT+TGG - chr4_3:56912533-56912552 None:intergenic 20.0%
!! ATATATATCATCAATTACTG+AGG - chr4_3:56912840-56912859 None:intergenic 20.0%
!! GATGATATATATGATGTTTA+TGG + chr4_3:56912848-56912867 Msa0650120:CDS 20.0%
!! AATATTGAGATGTGAAAATT+TGG - chr4_3:56912929-56912948 None:intergenic 20.0%
!! ATTTGAATTAAAATTCTAGG+TGG + chr4_3:56912988-56913007 Msa0650120:intron 20.0%
!! TTTGAATTAAAATTCTAGGT+GGG + chr4_3:56912989-56913008 Msa0650120:intron 20.0%
!!! CATATTCTTGTAAATTGTTT+TGG + chr4_3:56913268-56913287 Msa0650120:intron 20.0%
! CCAAGACATATTGAATAAAA+AGG - chr4_3:56911285-56911304 None:intergenic 25.0%
!! CCTTTTTATTCAATATGTCT+TGG + chr4_3:56911282-56911301 Msa0650120:CDS 25.0%
!! GTAAAATTTTGTGACAATTG+GGG - chr4_3:56911471-56911490 None:intergenic 25.0%
!! GAGTAAAATTTTGTGACAAT+TGG - chr4_3:56911473-56911492 None:intergenic 25.0%
! AAATCTAATACAAGTAGACA+AGG - chr4_3:56911805-56911824 None:intergenic 25.0%
! CTTAACCATATATTATCATG+TGG + chr4_3:56912188-56912207 Msa0650120:intron 25.0%
!! GTTTTCTTTAATGAATTAGG+TGG + chr4_3:56912675-56912694 Msa0650120:intron 25.0%
! TAGCAAAATTTCATGTATTG+TGG - chr4_3:56913038-56913057 None:intergenic 25.0%
! TTCTTCATAAACATCCAAAA+CGG - chr4_3:56913066-56913085 None:intergenic 25.0%
! TTTGGATGTTTATGAAGAAA+TGG + chr4_3:56913067-56913086 Msa0650120:CDS 25.0%
! ATTGATGTGCTTTATAAAGA+TGG + chr4_3:56913837-56913856 Msa0650120:CDS 25.0%
TTCAGTGTAATTACAAGTGT+CGG - chr4_3:56911406-56911425 None:intergenic 30.0%
TTACTCTTACTTTAATGTGC+AGG + chr4_3:56911487-56911506 Msa0650120:intron 30.0%
TAGTGCTAAAAGAAAAAGTG+AGG + chr4_3:56911537-56911556 Msa0650120:CDS 30.0%
! GGTTTGTGACATTTTTGTTA+GGG - chr4_3:56911574-56911593 None:intergenic 30.0%
! ATTGATTCAATCCAACGTTT+GGG + chr4_3:56911614-56911633 Msa0650120:CDS 30.0%
ATTCAATTGCACTTGTCTTT+AGG + chr4_3:56911735-56911754 Msa0650120:CDS 30.0%
GTTAGTGTCTGTATCATATT+CGG + chr4_3:56912046-56912065 Msa0650120:intron 30.0%
TCAATATATGCTATGAAGCA+CGG - chr4_3:56912087-56912106 None:intergenic 30.0%
TAGCATATATTGATCTCCAT+CGG + chr4_3:56912094-56912113 Msa0650120:intron 30.0%
GAGAACCACATGATAATATA+TGG - chr4_3:56912196-56912215 None:intergenic 30.0%
AACTTCAAAGAAACACTTGT+TGG + chr4_3:56912250-56912269 Msa0650120:CDS 30.0%
AAACAACATCAGAAAGAAGT+TGG + chr4_3:56912556-56912575 Msa0650120:CDS 30.0%
TTCTTTAATGAATTAGGTGG+TGG + chr4_3:56912678-56912697 Msa0650120:intron 30.0%
! GAATAGTTGAAGCTTACTTT+TGG + chr4_3:56912744-56912763 Msa0650120:CDS 30.0%
!! TGAAGCTTACTTTTGGATAT+TGG + chr4_3:56912751-56912770 Msa0650120:CDS 30.0%
!! GAAGCTTACTTTTGGATATT+GGG + chr4_3:56912752-56912771 Msa0650120:CDS 30.0%
! TTTTCACTCAAGCAATTGAA+AGG + chr4_3:56912891-56912910 Msa0650120:CDS 30.0%
!! ATTTTGCTATAAAGCCGTTT+TGG + chr4_3:56913049-56913068 Msa0650120:CDS 30.0%
TGCACAATAGATGAAAAGAT+TGG + chr4_3:56913297-56913316 Msa0650120:intron 30.0%
!!! ATTGACAATTTTGGGGTTAT+TGG - chr4_3:56913488-56913507 None:intergenic 30.0%
!!! ATGAAGCATTGACAATTTTG+GGG - chr4_3:56913495-56913514 None:intergenic 30.0%
!!! GATGAAGCATTGACAATTTT+GGG - chr4_3:56913496-56913515 None:intergenic 30.0%
!!! AGATGAAGCATTGACAATTT+TGG - chr4_3:56913497-56913516 None:intergenic 30.0%
! ATCTAAAATTGCTAGACTCA+TGG + chr4_3:56913513-56913532 Msa0650120:CDS 30.0%
TAGTAGTATAAGATGCACAA+GGG - chr4_3:56913963-56913982 None:intergenic 30.0%
ATAGTAGTATAAGATGCACA+AGG - chr4_3:56913964-56913983 None:intergenic 30.0%
TCACTCAAATTGACATTGAA+GGG + chr4_3:56914058-56914077 Msa0650120:three_prime_UTR 30.0%
!! AGAAATCGGAGTTGGTATTA+GGG - chr4_3:56911222-56911241 None:intergenic 35.0%
AAATTACCACCCCAACATTT+GGG + chr4_3:56911255-56911274 Msa0650120:CDS 35.0%
TCAATATGTCTTGGAACCTT+TGG + chr4_3:56911291-56911310 Msa0650120:CDS 35.0%
! GGGTTTGTGACATTTTTGTT+AGG - chr4_3:56911575-56911594 None:intergenic 35.0%
AAAATGTCACAAACCCTTTG+AGG + chr4_3:56911579-56911598 Msa0650120:CDS 35.0%
AAATGTCACAAACCCTTTGA+GGG + chr4_3:56911580-56911599 Msa0650120:CDS 35.0%
! TCAAATTAGCTTCCCTCAAA+GGG - chr4_3:56911595-56911614 None:intergenic 35.0%
! ATCAAATTAGCTTCCCTCAA+AGG - chr4_3:56911596-56911615 None:intergenic 35.0%
! GATTGATTCAATCCAACGTT+TGG + chr4_3:56911613-56911632 Msa0650120:CDS 35.0%
CAATGTCATGCTCAAAATGA+TGG - chr4_3:56911646-56911665 None:intergenic 35.0%
! CATCATTTTGAGCATGACAT+TGG + chr4_3:56911644-56911663 Msa0650120:CDS 35.0%
AGACAAGTGCAATTGAATGA+AGG - chr4_3:56911733-56911752 None:intergenic 35.0%
! CACTTGTCTTTAGGTTACTA+AGG + chr4_3:56911744-56911763 Msa0650120:CDS 35.0%
! TTTAGGTTACTAAGGCAACA+AGG + chr4_3:56911752-56911771 Msa0650120:CDS 35.0%
! ACAAGGATATCACATTTTGC+CGG + chr4_3:56911769-56911788 Msa0650120:CDS 35.0%
TAATACAAGTAGACAAGGTG+GGG - chr4_3:56911800-56911819 None:intergenic 35.0%
CTAATACAAGTAGACAAGGT+GGG - chr4_3:56911801-56911820 None:intergenic 35.0%
TCTAATACAAGTAGACAAGG+TGG - chr4_3:56911802-56911821 None:intergenic 35.0%
! TACTCTTTTTAGATGTGTCC+TGG + chr4_3:56911929-56911948 Msa0650120:intron 35.0%
!! ATCTCCATCGGTTTAATAAG+AGG + chr4_3:56912106-56912125 Msa0650120:intron 35.0%
GAAACCTCTTATTAAACCGA+TGG - chr4_3:56912113-56912132 None:intergenic 35.0%
AAGAAGTTCAAGAATGAGCA+AGG + chr4_3:56912226-56912245 Msa0650120:CDS 35.0%
ATTGAGTGGTCATCATTTCA+AGG - chr4_3:56912372-56912391 None:intergenic 35.0%
AAGAAAAGGACTCAATTGAG+TGG - chr4_3:56912386-56912405 None:intergenic 35.0%
GCATTACATTTCCACTTATG+AGG + chr4_3:56912471-56912490 Msa0650120:CDS 35.0%
! ATAGATGAAAAGATTGGTCC+AGG + chr4_3:56913303-56913322 Msa0650120:intron 35.0%
! ACCAACAATAGAAGAGTACA+TGG + chr4_3:56913366-56913385 Msa0650120:CDS 35.0%
GCTCTTGGAATAGTAAATTC+TGG + chr4_3:56913388-56913407 Msa0650120:CDS 35.0%
!! CTACAGAAGAGGTTTTTCAA+TGG + chr4_3:56913458-56913477 Msa0650120:CDS 35.0%
GGATGATATTGTTTCCAATG+AGG + chr4_3:56913534-56913553 Msa0650120:CDS 35.0%
TTTGTGCTTGATTACCTCAT+TGG - chr4_3:56913551-56913570 None:intergenic 35.0%
! AATTAGTTTGAGCAAGAGAG+AGG + chr4_3:56913636-56913655 Msa0650120:intron 35.0%
! ATTAGTTTGAGCAAGAGAGA+GGG + chr4_3:56913637-56913656 Msa0650120:intron 35.0%
ACAAATTGAGAACTCGCATA+AGG - chr4_3:56913809-56913828 None:intergenic 35.0%
GTCATTCTTTGTTGATCCTT+GGG - chr4_3:56913880-56913899 None:intergenic 35.0%
TGTCATTCTTTGTTGATCCT+TGG - chr4_3:56913881-56913900 None:intergenic 35.0%
TCCATGTCCAATATGAGTAA+AGG + chr4_3:56913920-56913939 Msa0650120:exon 35.0%
CCATGTCCAATATGAGTAAA+GGG + chr4_3:56913921-56913940 Msa0650120:exon 35.0%
TGAAGTCCCTTTACTCATAT+TGG - chr4_3:56913930-56913949 None:intergenic 35.0%
CTCACTCAAATTGACATTGA+AGG + chr4_3:56914057-56914076 Msa0650120:three_prime_UTR 35.0%
!! GAAATCGGAGTTGGTATTAG+GGG - chr4_3:56911221-56911240 None:intergenic 40.0%
!! GAGAAATCGGAGTTGGTATT+AGG - chr4_3:56911223-56911242 None:intergenic 40.0%
CAAATTACCACCCCAACATT+TGG + chr4_3:56911254-56911273 Msa0650120:CDS 40.0%
AATTACCACCCCAACATTTG+GGG + chr4_3:56911256-56911275 Msa0650120:CDS 40.0%
GATGGTATAATCCCAAACGT+TGG - chr4_3:56911628-56911647 None:intergenic 40.0%
! CAAGGATATCACATTTTGCC+GGG + chr4_3:56911770-56911789 Msa0650120:CDS 40.0%
GAGTAGTGTTCGTGTTTCAT+AGG - chr4_3:56911914-56911933 None:intergenic 40.0%
!! AACACTTGTTGGTGATGTTG+AGG + chr4_3:56912261-56912280 Msa0650120:CDS 40.0%
!! ACACTTGTTGGTGATGTTGA+GGG + chr4_3:56912262-56912281 Msa0650120:CDS 40.0%
TGTATGAAGCCACACATATG+AGG + chr4_3:56912296-56912315 Msa0650120:CDS 40.0%
TCCATGAATCCTCATATGTG+TGG - chr4_3:56912308-56912327 None:intergenic 40.0%
ACATATGAGGATTCATGGAG+AGG + chr4_3:56912309-56912328 Msa0650120:CDS 40.0%
AGCAAAGTTGCATCATGAGA+GGG - chr4_3:56912502-56912521 None:intergenic 40.0%
TAGCAAAGTTGCATCATGAG+AGG - chr4_3:56912503-56912522 None:intergenic 40.0%
ACTATTCTGTTGCGAGCAAA+AGG - chr4_3:56912731-56912750 None:intergenic 40.0%
TTTGAGCCTCAATACTCTGT+TGG + chr4_3:56912782-56912801 Msa0650120:CDS 40.0%
!! CTTCTACCAACAGAGTATTG+AGG - chr4_3:56912791-56912810 None:intergenic 40.0%
! CTCAATACTCTGTTGGTAGA+AGG + chr4_3:56912789-56912808 Msa0650120:CDS 40.0%
TGGTAGAAGGATAATGACCA+AGG + chr4_3:56912802-56912821 Msa0650120:CDS 40.0%
AATGACCAAGGTGATATCCT+TGG + chr4_3:56912814-56912833 Msa0650120:CDS 40.0%
ATCATCAATTACTGAGGCCA+AGG - chr4_3:56912834-56912853 None:intergenic 40.0%
TAGGTGGGATATAAGTTGCA+TGG + chr4_3:56913004-56913023 Msa0650120:intron 40.0%
TGAAGAAATGGAGCAAGAGA+TGG + chr4_3:56913079-56913098 Msa0650120:CDS 40.0%
CATACTTTACTGAGGCTCAA+TGG + chr4_3:56913326-56913345 Msa0650120:CDS 40.0%
GCCATGTACTCTTCTATTGT+TGG - chr4_3:56913370-56913389 None:intergenic 40.0%
! ATAGAAGAGTACATGGCTCT+TGG + chr4_3:56913373-56913392 Msa0650120:CDS 40.0%
ATCACAACAACATCCTTCGT+TGG + chr4_3:56913421-56913440 Msa0650120:CDS 40.0%
AACAACATCCTTCGTTGGAA+TGG + chr4_3:56913426-56913445 Msa0650120:CDS 40.0%
ACAACATCCTTCGTTGGAAT+GGG + chr4_3:56913427-56913446 Msa0650120:CDS 40.0%
GAGTGCTACATGAATGAACA+TGG + chr4_3:56913678-56913697 Msa0650120:CDS 40.0%
CAAGACAAGTCACAAATGCT+TGG + chr4_3:56913733-56913752 Msa0650120:CDS 40.0%
ACAAGTCACAAATGCTTGGA+AGG + chr4_3:56913737-56913756 Msa0650120:CDS 40.0%
TGCTTGGAAGGATACAAATG+AGG + chr4_3:56913749-56913768 Msa0650120:CDS 40.0%
CCCTTTACTCATATTGGACA+TGG - chr4_3:56913924-56913943 None:intergenic 40.0%
CAATGTCAATTTGAGTGAGC+TGG - chr4_3:56914056-56914075 None:intergenic 40.0%
ACGTCTAGAGAAATCGGAGT+TGG - chr4_3:56911230-56911249 None:intergenic 45.0%
CTCCGATTTCTCTAGACGTT+CGG + chr4_3:56911231-56911250 Msa0650120:CDS 45.0%
TGCCGAACGTCTAGAGAAAT+CGG - chr4_3:56911236-56911255 None:intergenic 45.0%
ATTACCACCCCAACATTTGG+GGG + chr4_3:56911257-56911276 Msa0650120:CDS 45.0%
AAAAGGTCCCCCCAAATGTT+GGG - chr4_3:56911268-56911287 None:intergenic 45.0%
AAAAAGGTCCCCCCAAATGT+TGG - chr4_3:56911269-56911288 None:intergenic 45.0%
TATGAAGCACAGACACTCCT+CGG + chr4_3:56911328-56911347 Msa0650120:intron 45.0%
ATGAAGCACGGATACAGACA+TGG - chr4_3:56912075-56912094 None:intergenic 45.0%
GCCACACATATGAGGATTCA+TGG + chr4_3:56912304-56912323 Msa0650120:CDS 45.0%
GGTCATCATTTCAAGGTGTG+AGG - chr4_3:56912365-56912384 None:intergenic 45.0%
CTAGGCAAGTTCTTGAAGAG+TGG - chr4_3:56912439-56912458 None:intergenic 45.0%
CACTCTTCAAGAACTTGCCT+AGG + chr4_3:56912437-56912456 Msa0650120:CDS 45.0%
AGAGGGATCTTCCTCATAAG+TGG - chr4_3:56912485-56912504 None:intergenic 45.0%
! GTGTCTGAAACGTCTCGAAT+AGG - chr4_3:56912630-56912649 None:intergenic 45.0%
AATGGAGCAAGAGATGGTCA+AGG + chr4_3:56913085-56913104 Msa0650120:CDS 45.0%
AATGCATCCCATTCCAACGA+AGG - chr4_3:56913437-56913456 None:intergenic 45.0%
CATGTAGCACTCAATAGCAG+AGG - chr4_3:56913670-56913689 None:intergenic 45.0%
TTGAGAACTCGCATAAGGAG+AGG - chr4_3:56913804-56913823 None:intergenic 45.0%
GATTGCTACACTAACTCCCA+AGG + chr4_3:56913861-56913880 Msa0650120:CDS 45.0%
!! ATAAAAAAATAAAAAAAACA+AGG - chr4_3:56913174-56913193 None:intergenic 5.0%
!! AAAATATAAATTTAAAAGAT+AGG - chr4_3:56913591-56913610 None:intergenic 5.0%
!! TCGGAGTTGGTATTAGGGGT+TGG - chr4_3:56911217-56911236 None:intergenic 50.0%
TTACCACCCCAACATTTGGG+GGG + chr4_3:56911258-56911277 Msa0650120:CDS 50.0%
AAAGGTCCCCCCAAATGTTG+GGG - chr4_3:56911267-56911286 None:intergenic 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG - chr4_3:56911329-56911348 None:intergenic 50.0%
!! TACAAGTGTCGGTGTCGTGT+TGG - chr4_3:56911395-56911414 None:intergenic 50.0%
TAGACAAGGTGGGGTTTACC+CGG - chr4_3:56911791-56911810 None:intergenic 50.0%
ATCATGTGTCAGAGTCGCGT+CGG - chr4_3:56911980-56911999 None:intergenic 50.0%
CAAGAACTTGCCTAGGCTAC+TGG + chr4_3:56912444-56912463 Msa0650120:CDS 50.0%
TAATGCCTTGCCAGTAGCCT+AGG - chr4_3:56912457-56912476 None:intergenic 50.0%
TGAGGCCAAGGATATCACCT+TGG - chr4_3:56912822-56912841 None:intergenic 50.0%
GAGCAAGAGATGGTCAAGGA+AGG + chr4_3:56913089-56913108 Msa0650120:CDS 50.0%
GGTCCAGGCATACTTTACTG+AGG + chr4_3:56913318-56913337 Msa0650120:CDS 50.0%
GAGCCTCAGTAAAGTATGCC+TGG - chr4_3:56913324-56913343 None:intergenic 50.0%
GGGATGCATTGCTACAGAAG+AGG + chr4_3:56913447-56913466 Msa0650120:CDS 50.0%
TTTGAGCAAGAGAGAGGGCA+TGG + chr4_3:56913642-56913661 Msa0650120:CDS 50.0%
! AGAGGCTTTGGCACTTCAGT+TGG - chr4_3:56913786-56913805 None:intergenic 50.0%
ACTCGCATAAGGAGAGGCTT+TGG - chr4_3:56913798-56913817 None:intergenic 50.0%
GCACAGACACTCCTCGGATT+AGG + chr4_3:56911334-56911353 Msa0650120:intron 55.0%
ACACGACACGTGTCCAACAC+CGG - chr4_3:56911366-56911385 None:intergenic 55.0%
!! TGTCGGTGTCGTGTTGGTGT+CGG - chr4_3:56911389-56911408 None:intergenic 55.0%
AACGACACGTGTTCGACACC+AGG - chr4_3:56911950-56911969 None:intergenic 55.0%
ACTTGCCTAGGCTACTGGCA+AGG + chr4_3:56912449-56912468 Msa0650120:CDS 55.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr4_3:56911344-56911363 Msa0650120:intron 60.0%
GATTAGGCGTGTCCCGGTGT+TGG + chr4_3:56911350-56911369 Msa0650120:intron 60.0%
CACGACACGTGTCCAACACC+GGG - chr4_3:56911365-56911384 None:intergenic 60.0%
! TGTCAGAGTCGCGTCGGTGT+TGG - chr4_3:56911974-56911993 None:intergenic 60.0%
GGTCCCCCCAAATGTTGGGG+TGG - chr4_3:56911264-56911283 None:intergenic 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr4_3:56911348-56911367 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56911181 56914093 56911181 ID=Msa0650120;Name=Msa0650120
chr4_3 mRNA 56911181 56914093 56911181 ID=Msa0650120-mRNA-1;Parent=Msa0650120;Name=Msa0650120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.57|1|1|1|7|158|562
chr4_3 exon 56911181 56911312 56911181 ID=Msa0650120-mRNA-1:exon:14916;Parent=Msa0650120-mRNA-1
chr4_3 exon 56911509 56911791 56911509 ID=Msa0650120-mRNA-1:exon:14917;Parent=Msa0650120-mRNA-1
chr4_3 exon 56912218 56912590 56912218 ID=Msa0650120-mRNA-1:exon:14918;Parent=Msa0650120-mRNA-1
chr4_3 exon 56912694 56912912 56912694 ID=Msa0650120-mRNA-1:exon:14919;Parent=Msa0650120-mRNA-1
chr4_3 exon 56913007 56913145 56913007 ID=Msa0650120-mRNA-1:exon:14920;Parent=Msa0650120-mRNA-1
chr4_3 exon 56913307 56913555 56913307 ID=Msa0650120-mRNA-1:exon:14921;Parent=Msa0650120-mRNA-1
chr4_3 exon 56913642 56914093 56913642 ID=Msa0650120-mRNA-1:exon:14922;Parent=Msa0650120-mRNA-1
chr4_3 CDS 56911181 56911312 56911181 ID=Msa0650120-mRNA-1:cds;Parent=Msa0650120-mRNA-1
chr4_3 CDS 56911509 56911791 56911509 ID=Msa0650120-mRNA-1:cds;Parent=Msa0650120-mRNA-1
chr4_3 CDS 56912218 56912590 56912218 ID=Msa0650120-mRNA-1:cds;Parent=Msa0650120-mRNA-1
chr4_3 CDS 56912694 56912912 56912694 ID=Msa0650120-mRNA-1:cds;Parent=Msa0650120-mRNA-1
chr4_3 CDS 56913007 56913145 56913007 ID=Msa0650120-mRNA-1:cds;Parent=Msa0650120-mRNA-1
chr4_3 CDS 56913307 56913555 56913307 ID=Msa0650120-mRNA-1:cds;Parent=Msa0650120-mRNA-1
chr4_3 CDS 56913642 56913935 56913642 ID=Msa0650120-mRNA-1:cds;Parent=Msa0650120-mRNA-1
chr4_3 three_prime_UTR 56913936 56914093 56913936 ID=Msa0650120-mRNA-1:three_prime_utr;Parent=Msa0650120-mRNA-1
Gene Sequence

>Msa0650120

ATGTCGGTTTCAGTAACATCATCACTAGTTGCTCCAACCCCTAATACCAACTCCGATTTCTCTAGACGTTCGGCAAATTACCACCCCAACATTTGGGGGGACCTTTTTATTCAATATGTCTTGGAACCTTTGGAATTTGATGAAATAATGAAGCAGATTATAGTGCTAAAAGAAAAAGTGAGGCAGATGCTAGTCCCTAACAAAAATGTCACAAACCCTTTGAGGGAAGCTAATTTGATTGATTCAATCCAACGTTTGGGATTATACCATCATTTTGAGCATGACATTGGAGAATTATTGCGACATATTCACAATAATTATGTTGAAAATGGAACAATAACTCTTAACGAAGACCTTCATTCAATTGCACTTGTCTTTAGGTTACTAAGGCAACAAGGATATCACATTTTGCCGGATGCTTTTAAGAAGTTCAAGAATGAGCAAGGAAACTTCAAAGAAACACTTGTTGGTGATGTTGAGGGAATGCTAAGTTTGTATGAAGCCACACATATGAGGATTCATGGAGAGGATATATTAGATGAAGCACTTTCTTTCACTTCCTCACACCTTGAAATGATGACCACTCAATTGAGTCCTTTTCTTGCTACAAAAATTAATCATAGCTTAAAGCGGCCACTCTTCAAGAACTTGCCTAGGCTACTGGCAAGGCATTACATTTCCACTTATGAGGAAGATCCCTCTCATGATGCAACTTTGCTATTACTTGCCAAATTAGATTTCAATTTGCTTCAAAAACAACATCAGAAAGAAGTTGGCGATATTTCAAAGTGGTGGAAAGATTTAGATTTTGCAACAAAACTACCTTTTGCTCGCAACAGAATAGTTGAAGCTTACTTTTGGATATTGGGAGTGTATTTTGAGCCTCAATACTCTGTTGGTAGAAGGATAATGACCAAGGTGATATCCTTGGCCTCAGTAATTGATGATATATATGATGTTTATGGTACAATAGAAGAGCTACAACTTTTCACTCAAGCAATTGAAAGGTGGGATATAAGTTGCATGGATTTTCTACCACAATACATGAAATTTTGCTATAAAGCCGTTTTGGATGTTTATGAAGAAATGGAGCAAGAGATGGTCAAGGAAGGCAGAGCATTTTGTGTAACATATGCCAAAAATGAAATGAAAAGATTGGTCCAGGCATACTTTACTGAGGCTCAATGGTTCAGTAGAAAATATATACCAACAATAGAAGAGTACATGGCTCTTGGAATAGTAAATTCTGGTTACTATCTAATCACAACAACATCCTTCGTTGGAATGGGATGCATTGCTACAGAAGAGGTTTTTCAATGGTTAACCAATAACCCCAAAATTGTCAATGCTTCATCTAAAATTGCTAGACTCATGGATGATATTGTTTCCAATGAGTTTGAGCAAGAGAGAGGGCATGGTGCCTCTGCTATTGAGTGCTACATGAATGAACATGGTGTGTCTAGAGAAGATGCAGTTAATGAACTTTCAAGACAAGTCACAAATGCTTGGAAGGATACAAATGAGGAACTTCTTGATCCAACTGAAGTGCCAAAGCCTCTCCTTATGCGAGTTCTCAATTTGTCACGTGTCATTGATGTGCTTTATAAAGATGGAGATTGCTACACTAACTCCCAAGGATCAACAAAGAATGACATAATATCTATCTTGTTGAATCCATGTCCAATATGA
Protein sequence

>Msa0650120

MSVSVTSSLVAPTPNTNSDFSRRSANYHPNIWGDLFIQYVLEPLEFDEIMKQIIVLKEKVRQMLVPNKNVTNPLREANLIDSIQRLGLYHHFEHDIGELLRHIHNNYVENGTITLNEDLHSIALVFRLLRQQGYHILPDAFKKFKNEQGNFKETLVGDVEGMLSLYEATHMRIHGEDILDEALSFTSSHLEMMTTQLSPFLATKINHSLKRPLFKNLPRLLARHYISTYEEDPSHDATLLLLAKLDFNLLQKQHQKEVGDISKWWKDLDFATKLPFARNRIVEAYFWILGVYFEPQYSVGRRIMTKVISLASVIDDIYDVYGTIEELQLFTQAIERWDISCMDFLPQYMKFCYKAVLDVYEEMEQEMVKEGRAFCVTYAKNEMKRLVQAYFTEAQWFSRKYIPTIEEYMALGIVNSGYYLITTTSFVGMGCIATEEVFQWLTNNPKIVNASSKIARLMDDIVSNEFEQERGHGASAIECYMNEHGVSREDAVNELSRQVTNAWKDTNEELLDPTEVPKPLLMRVLNLSRVIDVLYKDGDCYTNSQGSTKNDIISILLNPCPI*