AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 154 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTTCACCCAATTTAA+AGG 0.164462 2_4:-61887430 None:intergenic
TGCTCACTGCCTTCATTAAT+TGG 0.172705 2_4:+61888075 Msa0340510:three_prime_UTR
AAAGAGTTCTTTAGGATTAC+AGG 0.188825 2_4:-61891767 None:intergenic
GGGTCTGCCCACCTTTAAAT+TGG 0.190230 2_4:+61887419 Msa0340510:three_prime_UTR
ACCTGTTCAATAATGTTAAA+TGG 0.217079 2_4:-61891114 None:intergenic
GATTCCATGACCTCAGTATT+TGG 0.236015 2_4:-61887385 None:intergenic
AATACTTCAAAGAGTTCTTT+AGG 0.256394 2_4:-61891775 None:intergenic
TGGCAGATGCTTTAGCTAAA+TGG 0.257488 2_4:+61887793 Msa0340510:three_prime_UTR
TTGTCATTTCCCATGCTTGC+AGG 0.277779 2_4:-61892202 None:intergenic
ATCAAAACCATTGGTGGGTT+TGG 0.279595 2_4:+61891882 Msa0340510:three_prime_UTR
AACACTAAAGTAATTGATAT+TGG 0.291339 2_4:+61890937 Msa0340510:three_prime_UTR
TATACCATGTTGAAAAGATA+TGG 0.297372 2_4:-61891089 None:intergenic
GTATTGATCTGCAGGACTTC+TGG 0.301788 2_4:+61891793 Msa0340510:three_prime_UTR
ATGTCTGTAGCTACTGTTCA+TGG 0.333467 2_4:-61892305 None:intergenic
TCATGGAATCCGAGATTTCT+TGG 0.333676 2_4:+61887398 Msa0340510:three_prime_UTR
TGGCATGTTATCTCTTTGAT+TGG 0.339013 2_4:+61887896 Msa0340510:three_prime_UTR
AATTAGTGAGTTAGTGAATC+AGG 0.345071 2_4:+61887303 Msa0340510:three_prime_UTR
TATTATTGAATCAGACTCTA+AGG 0.350150 2_4:+61887638 Msa0340510:three_prime_UTR
GCCATTTAACATTATTGAAC+AGG 0.352493 2_4:+61891113 Msa0340510:three_prime_UTR
GCCAAAGTTTCATATCAAAA+TGG 0.357308 2_4:-61887108 None:intergenic
GGCAGATGCTTTAGCTAAAT+GGG 0.359621 2_4:+61887794 Msa0340510:three_prime_UTR
AAGAAGCAGCATATATATAT+TGG 0.363079 2_4:+61888023 Msa0340510:three_prime_UTR
AACTCTTTCAAGCATTGATC+TGG 0.367189 2_4:+61891740 Msa0340510:three_prime_UTR
CACATTCCTTTGGAGTTCTC+AGG 0.376454 2_4:-61890271 None:intergenic
AGAAAGGGCCATGGAGAGAA+AGG 0.377606 2_4:+61892029 Msa0340510:three_prime_UTR
GAAAAGATATGGGAACATTC+TGG 0.388438 2_4:-61891078 None:intergenic
GTGTTAAATACTTCTTTGAT+TGG 0.390194 2_4:-61887024 None:intergenic
GGTCTGCCCACCTTTAAATT+GGG 0.390565 2_4:+61887420 Msa0340510:three_prime_UTR
TAAACTCTCCGATAGAATTT+CGG 0.395964 2_4:-61887509 None:intergenic
AAACCCTAGCGGATCCTTCA+TGG 0.396758 2_4:+61886193 Msa0340510:exon
ATCATCAACTTGTTAAAACT+TGG 0.401963 2_4:+61891018 Msa0340510:three_prime_UTR
GCCTATGCGATTATTCTTGT+GGG 0.404956 2_4:+61891317 Msa0340510:three_prime_UTR
AAGAAGTTCAGCTGTGATAA+TGG 0.410981 2_4:-61887565 None:intergenic
CAATAGTCAACACATTCCTT+TGG 0.415572 2_4:-61890281 None:intergenic
ATGAAGGATCCGCTAGGGTT+TGG 0.418532 2_4:-61886191 None:intergenic
CACTGTTCACAGTTGCTAGA+AGG 0.420795 2_4:-61892367 None:intergenic
TGGTGACATTAGATTGTGTT+TGG 0.430303 2_4:+61887239 Msa0340510:three_prime_UTR
CATGGAATCCGAGATTTCTT+GGG 0.438544 2_4:+61887399 Msa0340510:three_prime_UTR
ACTTGTTAAAACTTGGATGA+AGG 0.440194 2_4:+61891025 Msa0340510:three_prime_UTR
TGAAGTGTGCATAGTCTCAT+AGG 0.444255 2_4:+61892056 Msa0340510:three_prime_UTR
TAGATTGTGTTTGGAAAGCT+AGG 0.445799 2_4:+61887248 Msa0340510:three_prime_UTR
TCCAAAAGTAAAATCTCAAC+TGG 0.446101 2_4:+61886979 Msa0340510:exon
ATGAGACTATGCACACTTCA+AGG 0.449441 2_4:-61892053 None:intergenic
TGCCTATGCGATTATTCTTG+TGG 0.456514 2_4:+61891316 Msa0340510:three_prime_UTR
TTGGAGCGTGAGAGAGAGAA+AGG 0.458785 2_4:+61892013 Msa0340510:three_prime_UTR
TATTGATTTCAAGTGGTTGA+GGG 0.461509 2_4:+61890903 Msa0340510:intron
ACTAAGGATGAAGGGGATGA+AGG 0.467198 2_4:+61890976 Msa0340510:three_prime_UTR
ATGCGATTATTCTTGTGGGC+TGG 0.467925 2_4:+61891321 Msa0340510:three_prime_UTR
GAAACTTTGGCAGGAGCTGT+TGG 0.468092 2_4:+61887120 Msa0340510:three_prime_UTR
ATGAAATAACACGACGGTAT+CGG 0.469603 2_4:-61886223 None:intergenic
CTTGTTAAAACTTGGATGAA+GGG 0.469982 2_4:+61891026 Msa0340510:three_prime_UTR
GTGATGGCAAGGCAAGGCTC+TGG 0.470770 2_4:+61891956 Msa0340510:three_prime_UTR
TTCAAGGCCCTTTCTCTCCA+TGG 0.471238 2_4:-61892037 None:intergenic
CTAAGGATGAAGGGGATGAA+GGG 0.472128 2_4:+61890977 Msa0340510:three_prime_UTR
TCTTTGAAGTATTGATCTGC+AGG 0.476375 2_4:+61891785 Msa0340510:three_prime_UTR
TTATTGATTTCAAGTGGTTG+AGG 0.477158 2_4:+61890902 Msa0340510:intron
TTCATCATCAAAACCATTGG+TGG 0.484147 2_4:+61891876 Msa0340510:three_prime_UTR
GGACTTTAAATACTACTTGA+GGG 0.486564 2_4:+61891977 Msa0340510:three_prime_UTR
AGGAAGCAGTTGATTATCTC+AGG 0.486674 2_4:+61887658 Msa0340510:three_prime_UTR
TGCTTAATTTCAGGCAGCAA+AGG 0.487320 2_4:+61886930 Msa0340510:intron
TCCTCCAAATACTGAGGTCA+TGG 0.492512 2_4:+61887381 Msa0340510:three_prime_UTR
ATGTCGCAGAACTCATGAAT+TGG 0.500945 2_4:+61887327 Msa0340510:three_prime_UTR
CATTCCTTCACTAAGGATGA+AGG 0.501159 2_4:+61890967 Msa0340510:three_prime_UTR
ATACCATGTTGAAAAGATAT+GGG 0.501984 2_4:-61891088 None:intergenic
GCCTTTAGATGAAATTGAAA+AGG 0.502488 2_4:+61891226 Msa0340510:intron
TGAGGGAAGAGAAAGGGCCT+TGG 0.503235 2_4:+61891994 Msa0340510:three_prime_UTR
CATAGTCTCATAGGTAATGT+AGG 0.503260 2_4:+61892065 Msa0340510:three_prime_UTR
TTAAATTGGCTCTAGACAAT+GGG 0.510220 2_4:+61887604 Msa0340510:three_prime_UTR
TTTCTCTCTCTCACGCTCCA+AGG 0.511718 2_4:-61892011 None:intergenic
TTGGCATATAATGCACATCA+AGG 0.511800 2_4:+61888042 Msa0340510:three_prime_UTR
ATTAAATTGGCTCTAGACAA+TGG 0.513231 2_4:+61887603 Msa0340510:three_prime_UTR
CGACTGGCATTCCTTCACTA+AGG 0.517064 2_4:+61890960 Msa0340510:three_prime_UTR
AGGAAGGAAAATACTGATGT+GGG 0.518380 2_4:+61891246 Msa0340510:three_prime_UTR
ATACCCACGGAGAAGAATTC+CGG 0.529250 2_4:-61886341 None:intergenic
GGGTTAAGTGCAAGTTATGC+CGG 0.529646 2_4:+61887478 Msa0340510:three_prime_UTR
AGTTTCTAGACCTGCAAGCA+TGG 0.530318 2_4:+61892192 Msa0340510:three_prime_UTR
TACTACTTGAGGGAAGAGAA+AGG 0.530718 2_4:+61891987 Msa0340510:three_prime_UTR
AAGGATCCGCTAGGGTTTGG+AGG 0.531070 2_4:-61886188 None:intergenic
AAACTTTGGCAGGAGCTGTT+GGG 0.532809 2_4:+61887121 Msa0340510:three_prime_UTR
CAAAATGTGATGGCAAGGCA+AGG 0.536865 2_4:+61891950 Msa0340510:three_prime_UTR
TTCAATTAGCATAAGAAACA+AGG 0.537855 2_4:-61891816 None:intergenic
CTTTGATTGGCACTCGAGGA+AGG 0.538329 2_4:-61887011 None:intergenic
TTGTTAAAACTTGGATGAAG+GGG 0.546476 2_4:+61891027 Msa0340510:three_prime_UTR
AAAGTCATACCAATTAATGA+AGG 0.548252 2_4:-61888084 None:intergenic
TCATCATCAAAACCATTGGT+GGG 0.549464 2_4:+61891877 Msa0340510:three_prime_UTR
TGCAGATCAATAATTTCAAG+AGG 0.551282 2_4:-61891841 None:intergenic
TTAGATGAAATTGAAAAGGA+AGG 0.552449 2_4:+61891230 Msa0340510:intron
TGGACTTTAAATACTACTTG+AGG 0.554445 2_4:+61891976 Msa0340510:three_prime_UTR
AATTTCACCCAATTTAAAGG+TGG 0.556608 2_4:-61887427 None:intergenic
AAATTCATCATCAAAACCAT+TGG 0.557399 2_4:+61891873 Msa0340510:three_prime_UTR
ACTTACATTTGAGCATCCAT+AGG 0.559483 2_4:+61891409 Msa0340510:three_prime_UTR
ATCCCCTTCATCCTTAGTGA+AGG 0.563410 2_4:-61890971 None:intergenic
AATTCCGGTGCGGTGGTCGA+TGG 0.563463 2_4:-61886326 None:intergenic
TGGAGCGTGAGAGAGAGAAA+GGG 0.566861 2_4:+61892014 Msa0340510:three_prime_UTR
AAGGAAGGAAAATACTGATG+TGG 0.567157 2_4:+61891245 Msa0340510:three_prime_UTR
ACTACTTGAGGGAAGAGAAA+GGG 0.567907 2_4:+61891988 Msa0340510:three_prime_UTR
TGGGCAGACCCAAGAAATCT+CGG 0.568421 2_4:-61887407 None:intergenic
GTTTCTAGACCTGCAAGCAT+GGG 0.568659 2_4:+61892193 Msa0340510:three_prime_UTR
TCCACTCAACAATGTTACAT+TGG 0.573872 2_4:-61887168 None:intergenic
TGTGATGGTGCTGTGAATCA+AGG 0.575441 2_4:+61887454 Msa0340510:three_prime_UTR
ATTCCTTCACTAAGGATGAA+GGG 0.575728 2_4:+61890968 Msa0340510:three_prime_UTR
AAATGACAAAATAGTTGTCA+CGG 0.576029 2_4:+61892216 Msa0340510:three_prime_UTR
GTATCGGTCGGAGGCCATGA+AGG 0.577862 2_4:-61886207 None:intergenic
CTACAGAGAAGCAAATAAAG+TGG 0.578768 2_4:+61887773 Msa0340510:three_prime_UTR
ATTTCACCCAATTTAAAGGT+GGG 0.579185 2_4:-61887426 None:intergenic
TCCAATGTAACATTGTTGAG+TGG 0.580346 2_4:+61887167 Msa0340510:three_prime_UTR
GTGAGAGAGAGAAAGGGCCA+TGG 0.581595 2_4:+61892020 Msa0340510:three_prime_UTR
ACTATATTATGCAGGGAGAG+AGG 0.582725 2_4:+61890235 Msa0340510:intron
GTCACCATCGACCACCGCAC+CGG 0.589367 2_4:+61886322 Msa0340510:CDS
CTCTCATAATCTCAACGTGT+TGG 0.591329 2_4:-61890306 None:intergenic
TGTCACGGAAATGACATGAA+TGG 0.591506 2_4:+61892231 Msa0340510:three_prime_UTR
TCTTTCAAGCATTGATCTGG+AGG 0.591951 2_4:+61891743 Msa0340510:three_prime_UTR
AAGTAATTGATATTGGCGAC+TGG 0.592867 2_4:+61890944 Msa0340510:three_prime_UTR
GCACCGGAATTCTTCTCCGT+GGG 0.593552 2_4:+61886338 Msa0340510:CDS
TTCCTTCACTAAGGATGAAG+GGG 0.594491 2_4:+61890969 Msa0340510:three_prime_UTR
GAAAGGGCCATGGAGAGAAA+GGG 0.594740 2_4:+61892030 Msa0340510:three_prime_UTR
TAAGGATGAAGGGGATGAAG+GGG 0.594799 2_4:+61890978 Msa0340510:three_prime_UTR
TGAGAGGAGTAAGATCTGAC+AGG 0.595664 2_4:+61890323 Msa0340510:three_prime_UTR
TGGGTGAAATTGAATTGTGA+TGG 0.597428 2_4:+61887439 Msa0340510:three_prime_UTR
GGAGAAGAATTCCGGTGCGG+TGG 0.597879 2_4:-61886333 None:intergenic
TGCTGCAAAATGTGATGGCA+AGG 0.600097 2_4:+61891945 Msa0340510:three_prime_UTR
CGCACCGGAATTCTTCTCCG+TGG 0.604759 2_4:+61886337 Msa0340510:CDS
GCAGATGCTTTAGCTAAATG+GGG 0.609226 2_4:+61887795 Msa0340510:three_prime_UTR
TGAGTGGAAAATCAAATTTG+TGG 0.609503 2_4:+61887219 Msa0340510:three_prime_UTR
ACTTCTTTGATTGGCACTCG+AGG 0.609949 2_4:-61887015 None:intergenic
GAGGCCATGAAGGATCCGCT+AGG 0.615773 2_4:-61886197 None:intergenic
AGTGTTATCCGAAATTCTAT+CGG 0.616967 2_4:+61887501 Msa0340510:three_prime_UTR
AGGCCATGAAGGATCCGCTA+GGG 0.618461 2_4:-61886196 None:intergenic
TCCATGACCTCAGTATTTGG+AGG 0.620401 2_4:-61887382 None:intergenic
TGGCATATAATGCACATCAA+GGG 0.621018 2_4:+61888043 Msa0340510:three_prime_UTR
GCAGTTGATTATCTCAGGCG+TGG 0.622685 2_4:+61887663 Msa0340510:three_prime_UTR
TCGCAGAACTCATGAATTGG+TGG 0.625167 2_4:+61887330 Msa0340510:three_prime_UTR
TAGAATTTCGGATAACACTC+CGG 0.626837 2_4:-61887497 None:intergenic
ATATTTGCTGCAAAATGTGA+TGG 0.629195 2_4:+61891940 Msa0340510:three_prime_UTR
ACAACATCAAAATAGTGAGT+CGG 0.630081 2_4:-61887834 None:intergenic
AACACGACGGTATCGGTCGG+AGG 0.648325 2_4:-61886216 None:intergenic
CAGATGCTTTAGCTAAATGG+GGG 0.649735 2_4:+61887796 Msa0340510:three_prime_UTR
AAAACACCTGAGAACTCCAA+AGG 0.650009 2_4:+61890265 Msa0340510:three_prime_UTR
AAATAAACCAATCAATCCCA+CGG 0.653017 2_4:-61886285 None:intergenic
CAACACGTTGAGATTATGAG+AGG 0.657644 2_4:+61890307 Msa0340510:three_prime_UTR
GATGGTGCTGTGAATCAAGG+TGG 0.664465 2_4:+61887457 Msa0340510:three_prime_UTR
TGCTTGATAAATCTTGTGAG+TGG 0.668915 2_4:+61887203 Msa0340510:three_prime_UTR
GGAAGGAAAATACTGATGTG+GGG 0.670018 2_4:+61891247 Msa0340510:three_prime_UTR
GCCCACAAGAATAATCGCAT+AGG 0.672975 2_4:-61891318 None:intergenic
AGAGTTCAGATGATAAGTGT+TGG 0.678467 2_4:-61887993 None:intergenic
TCATTCTCCTCCAAATACTG+AGG 0.678592 2_4:+61887375 Msa0340510:three_prime_UTR
CTCTCTCCTCCAAACCCTAG+CGG 0.679867 2_4:+61886182 Msa0340510:five_prime_UTR
AATAACACGACGGTATCGGT+CGG 0.686515 2_4:-61886219 None:intergenic
ATGGTGCTGTGAATCAAGGT+GGG 0.690520 2_4:+61887458 Msa0340510:three_prime_UTR
TGGATTTGAATGTGTCTCAG+AGG 0.699142 2_4:+61891341 Msa0340510:three_prime_UTR
GTTGTCAAATGTATAGAACA+CGG 0.707200 2_4:-61891284 None:intergenic
TTATGATGCAGAGATGTCAG+TGG 0.721555 2_4:+61891696 Msa0340510:intron
CACGGAGAAGAATTCCGGTG+CGG 0.742215 2_4:-61886336 None:intergenic
TGAAGAATGAAATAACACGA+CGG 0.754863 2_4:-61886229 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATAAATAAAAAA+TGG - chr2_4:61890885-61890904 None:intergenic 0.0%
!!! TTTTTAAAAATACCAAAAAA+TGG - chr2_4:61890458-61890477 None:intergenic 10.0%
!!! TTTTTTTTAAACAAAAATTG+TGG + chr2_4:61890522-61890541 Msa0340510:intron 10.0%
!! TAATTAATATTAACTTTGAA+TGG - chr2_4:61890790-61890809 None:intergenic 10.0%
!!! TATTTTTCAAGGTATTAAAT+TGG + chr2_4:61887590-61887609 Msa0340510:three_prime_UTR 15.0%
!!! ATTTTTTTTATGACGAAAAA+GGG - chr2_4:61887947-61887966 None:intergenic 15.0%
!!! TATTTTTTTTATGACGAAAA+AGG - chr2_4:61887948-61887967 None:intergenic 15.0%
!!! TTTTCGTCATAAAAAAAATA+TGG + chr2_4:61887948-61887967 Msa0340510:three_prime_UTR 15.0%
!! ATTTATTAACTTCTTGAATA+TGG + chr2_4:61888505-61888524 Msa0340510:intron 15.0%
!! AATATAGTAAAAAAAAAGGA+GGG - chr2_4:61890223-61890242 None:intergenic 15.0%
!! TAATATAGTAAAAAAAAAGG+AGG - chr2_4:61890224-61890243 None:intergenic 15.0%
!! GCATAATATAGTAAAAAAAA+AGG - chr2_4:61890227-61890246 None:intergenic 15.0%
!!! TTTTTTTTACTATATTATGC+AGG + chr2_4:61890227-61890246 Msa0340510:intron 15.0%
!!! TTTTTTTACTATATTATGCA+GGG + chr2_4:61890228-61890247 Msa0340510:intron 15.0%
!! AATGGAACAAAATAAATAAA+TGG - chr2_4:61890440-61890459 None:intergenic 15.0%
!!! ATTTATTTTGTTCCATTTTT+TGG + chr2_4:61890443-61890462 Msa0340510:intron 15.0%
!! CAAAAAAAAAAATGTAAATC+TGG + chr2_4:61890610-61890629 Msa0340510:intron 15.0%
!!! TTTTATTTATTGATTTCAAG+TGG + chr2_4:61890896-61890915 Msa0340510:intron 15.0%
!! TTATAAATCAAAGTAAAAGA+TGG - chr2_4:61891588-61891607 None:intergenic 15.0%
!! TAAAATATACAAGAAGAAAT+AGG - chr2_4:61891629-61891648 None:intergenic 15.0%
!!! TCTTCTAAATATTTTTCATA+GGG - chr2_4:61892112-61892131 None:intergenic 15.0%
!!! TTCTTCTAAATATTTTTCAT+AGG - chr2_4:61892113-61892132 None:intergenic 15.0%
!! AATAGAACAAGAATAATATG+AGG - chr2_4:61886383-61886402 None:intergenic 20.0%
!!! ATGTTGCGTTTTATTTTATT+TGG + chr2_4:61886508-61886527 Msa0340510:intron 20.0%
!!! TTTATTTTATTTGGTGTTTC+AGG + chr2_4:61886517-61886536 Msa0340510:intron 20.0%
!!! TTATTTTATTTGGTGTTTCA+GGG + chr2_4:61886518-61886537 Msa0340510:intron 20.0%
!! AATTGCTAAAAACTGAAATA+AGG - chr2_4:61886627-61886646 None:intergenic 20.0%
!!! TATATTTGAATTTTGTCTAG+AGG + chr2_4:61886720-61886739 Msa0340510:intron 20.0%
!! GAATTATATACAATGTTACT+TGG + chr2_4:61886790-61886809 Msa0340510:intron 20.0%
!!! TTTTTTTTATGACGAAAAAG+GGG - chr2_4:61887946-61887965 None:intergenic 20.0%
!!! TTTCATCACATTTTACATTA+TGG + chr2_4:61888104-61888123 Msa0340510:intron 20.0%
!!! AAAGGCATTTAATTTATTTC+AGG - chr2_4:61888237-61888256 None:intergenic 20.0%
!!! GAAATAAATTAAATGCCTTT+TGG + chr2_4:61888237-61888256 Msa0340510:intron 20.0%
!! ACTATCAAACTTCATAATAT+AGG + chr2_4:61888317-61888336 Msa0340510:intron 20.0%
!!! ACATTTTTACATAATTCTGA+TGG + chr2_4:61888638-61888657 Msa0340510:intron 20.0%
!! AAAATTGAAGATACATGTTT+AGG - chr2_4:61888707-61888726 None:intergenic 20.0%
!! AGTGAATAAACACTAATATA+AGG + chr2_4:61888749-61888768 Msa0340510:intron 20.0%
!!! ATTTTTAACGAATCCAATAA+TGG - chr2_4:61888779-61888798 None:intergenic 20.0%
!! TTGGATTCGTTAAAAATATA+AGG + chr2_4:61888782-61888801 Msa0340510:intron 20.0%
!!! TTCTTTTTTGGATATTTGAA+AGG - chr2_4:61888860-61888879 None:intergenic 20.0%
!!! ATCTTGGCAAAATTTAATTT+TGG + chr2_4:61889811-61889830 Msa0340510:intron 20.0%
!! ATATAGTAAAAAAAAAGGAG+GGG - chr2_4:61890222-61890241 None:intergenic 20.0%
!! AAAAAACGTATTTCTTCATA+TGG - chr2_4:61890351-61890370 None:intergenic 20.0%
!! GACAAAAATAAAAAATCATG+TGG - chr2_4:61890411-61890430 None:intergenic 20.0%
!! AACACTAAAGTAATTGATAT+TGG + chr2_4:61890937-61890956 Msa0340510:three_prime_UTR 20.0%
!!! TGAAAAATCATGTCAATTTT+AGG - chr2_4:61891452-61891471 None:intergenic 20.0%
!!! TAAGATATGCATAAGTTTTA+GGG - chr2_4:61891492-61891511 None:intergenic 20.0%
!!! ATAAGATATGCATAAGTTTT+AGG - chr2_4:61891493-61891512 None:intergenic 20.0%
!! ATAGGATTAAGAATTACAAT+GGG - chr2_4:61891611-61891630 None:intergenic 20.0%
!! AATAGGATTAAGAATTACAA+TGG - chr2_4:61891612-61891631 None:intergenic 20.0%
!!! CTTCTAAATATTTTTCATAG+GGG - chr2_4:61892111-61892130 None:intergenic 20.0%
!!! ATACTACTTAATTTTAACTG+TGG + chr2_4:61892137-61892156 Msa0340510:three_prime_UTR 20.0%
!!! TACTACTTAATTTTAACTGT+GGG + chr2_4:61892138-61892157 Msa0340510:three_prime_UTR 20.0%
!!! GTGTTTTTTCTTTTCTTTTG+AGG - chr2_4:61886159-61886178 None:intergenic 25.0%
!!! ATTGGTTTATTTTCAGATCT+GGG + chr2_4:61886296-61886315 Msa0340510:CDS 25.0%
! TATTGTGAAGAAAAAGTTGA+TGG + chr2_4:61886442-61886461 Msa0340510:intron 25.0%
!! ATTGTGAAGAAAAAGTTGAT+GGG + chr2_4:61886443-61886462 Msa0340510:intron 25.0%
! GGATAGAAGTAAATTAGTAT+TGG + chr2_4:61886765-61886784 Msa0340510:intron 25.0%
!! TTTTACTTGTGCTTAATTTC+AGG + chr2_4:61886921-61886940 Msa0340510:intron 25.0%
! GTGTTAAATACTTCTTTGAT+TGG - chr2_4:61887027-61887046 None:intergenic 25.0%
! TTCAATTTCACCCAATTTAA+AGG - chr2_4:61887433-61887452 None:intergenic 25.0%
! TATTATTGAATCAGACTCTA+AGG + chr2_4:61887638-61887657 Msa0340510:three_prime_UTR 25.0%
!! AAAACAGTTTTACAGAAATC+AGG - chr2_4:61887861-61887880 None:intergenic 25.0%
!!! ATTGGTTGTTGTTTGTTTTT+TGG + chr2_4:61887914-61887933 Msa0340510:three_prime_UTR 25.0%
!!! TTGGTTGTTGTTTGTTTTTT+GGG + chr2_4:61887915-61887934 Msa0340510:three_prime_UTR 25.0%
! AAGAAGCAGCATATATATAT+TGG + chr2_4:61888023-61888042 Msa0340510:three_prime_UTR 25.0%
! AAAGTCATACCAATTAATGA+AGG - chr2_4:61888087-61888106 None:intergenic 25.0%
! ACACAAATCTAAATTGATCT+AGG + chr2_4:61888179-61888198 Msa0340510:intron 25.0%
!! GCATTTAATTTATTTCAGGT+TGG - chr2_4:61888233-61888252 None:intergenic 25.0%
!! ATGGATTACTTAACTATGAA+CGG + chr2_4:61888524-61888543 Msa0340510:intron 25.0%
! AAGATATTAACATGCAAAGT+TGG - chr2_4:61888580-61888599 None:intergenic 25.0%
! AACTTTGCATGTTAATATCT+TGG + chr2_4:61888579-61888598 Msa0340510:intron 25.0%
! ACTTTGCATGTTAATATCTT+GGG + chr2_4:61888580-61888599 Msa0340510:intron 25.0%
! CATAATTCTGATGGAAATAA+TGG + chr2_4:61888647-61888666 Msa0340510:intron 25.0%
! AATATAAGGACTTCCATTAT+TGG + chr2_4:61888763-61888782 Msa0340510:intron 25.0%
! TATCCAAAAAAGAAGACAAA+CGG + chr2_4:61888866-61888885 Msa0340510:intron 25.0%
! AAGGGTAAGAATTTCTATAA+AGG + chr2_4:61889086-61889105 Msa0340510:intron 25.0%
! AGAATTTCTATAAAGGTGAT+TGG + chr2_4:61889093-61889112 Msa0340510:intron 25.0%
!! ATCTAAACTTGTTTGAGTAT+AGG + chr2_4:61889239-61889258 Msa0340510:intron 25.0%
!! TCTAAACTTGTTTGAGTATA+GGG + chr2_4:61889240-61889259 Msa0340510:intron 25.0%
!! CAGAGAAATTTGTTTGATAT+TGG - chr2_4:61889333-61889352 None:intergenic 25.0%
! AAATTGCTACTCCAATATAA+AGG + chr2_4:61889454-61889473 Msa0340510:intron 25.0%
! AATTGCTACTCCAATATAAA+GGG + chr2_4:61889455-61889474 Msa0340510:intron 25.0%
! TTGAACTAAAGTGGAAAATA+GGG - chr2_4:61889501-61889520 None:intergenic 25.0%
! TTTGAACTAAAGTGGAAAAT+AGG - chr2_4:61889502-61889521 None:intergenic 25.0%
! AAATAATATCGCTTTCTCAA+TGG - chr2_4:61889530-61889549 None:intergenic 25.0%
!! ATTTTTGTCTCTAATTCTGT+TGG + chr2_4:61889546-61889565 Msa0340510:intron 25.0%
!! TTTTTGTCTCTAATTCTGTT+GGG + chr2_4:61889547-61889566 Msa0340510:intron 25.0%
! AATAGTCTATGAGTATGATT+GGG - chr2_4:61889723-61889742 None:intergenic 25.0%
! AAATAGTCTATGAGTATGAT+TGG - chr2_4:61889724-61889743 None:intergenic 25.0%
!! AATTAAATTTTGCCAAGATC+TGG - chr2_4:61889810-61889829 None:intergenic 25.0%
! CATTTAATTATACATGAAGC+TGG - chr2_4:61890025-61890044 None:intergenic 25.0%
!!! TTTAATTTTCCCATATGCAA+AGG - chr2_4:61890087-61890106 None:intergenic 25.0%
! TATAGTAAAAAAAAAGGAGG+GGG - chr2_4:61890221-61890240 None:intergenic 25.0%
!!! GAAAATGTTTGTTGTTTTCA+AGG - chr2_4:61890640-61890659 None:intergenic 25.0%
!! TATTAACACAGTTCATTTTC+AGG - chr2_4:61890681-61890700 None:intergenic 25.0%
! TGAAAATGAACTGTGTTAAT+AGG + chr2_4:61890680-61890699 Msa0340510:intron 25.0%
!!! TGAATGGTTTTAACTTTGAA+TGG - chr2_4:61890774-61890793 None:intergenic 25.0%
!!! ATCATCAACTTGTTAAAACT+TGG + chr2_4:61891018-61891037 Msa0340510:three_prime_UTR 25.0%
! ATACCATGTTGAAAAGATAT+GGG - chr2_4:61891091-61891110 None:intergenic 25.0%
! TATACCATGTTGAAAAGATA+TGG - chr2_4:61891092-61891111 None:intergenic 25.0%
! ACCTGTTCAATAATGTTAAA+TGG - chr2_4:61891117-61891136 None:intergenic 25.0%
! CAAATTAAGCAAGATAAAGA+TGG - chr2_4:61891167-61891186 None:intergenic 25.0%
!! TCCTTTTCAATTTCATCTAA+AGG - chr2_4:61891230-61891249 None:intergenic 25.0%
! TTAGATGAAATTGAAAAGGA+AGG + chr2_4:61891230-61891249 Msa0340510:intron 25.0%
!! TGTATATTTTACTTCCCTAA+CGG + chr2_4:61891638-61891657 Msa0340510:intron 25.0%
! AATACTTCAAAGAGTTCTTT+AGG - chr2_4:61891778-61891797 None:intergenic 25.0%
! TTCAATTAGCATAAGAAACA+AGG - chr2_4:61891819-61891838 None:intergenic 25.0%
! AAATTCATCATCAAAACCAT+TGG + chr2_4:61891873-61891892 Msa0340510:three_prime_UTR 25.0%
! AAATGACAAAATAGTTGTCA+CGG + chr2_4:61892216-61892235 Msa0340510:three_prime_UTR 25.0%
TGAAGAATGAAATAACACGA+CGG - chr2_4:61886232-61886251 None:intergenic 30.0%
AAATAAACCAATCAATCCCA+CGG - chr2_4:61886288-61886307 None:intergenic 30.0%
!!! GATTGGTTTATTTTCAGATC+TGG + chr2_4:61886295-61886314 Msa0340510:CDS 30.0%
GTAATGAAAATTCATACCCA+CGG - chr2_4:61886357-61886376 None:intergenic 30.0%
GAATCATATTGTAGATCACT+CGG + chr2_4:61886660-61886679 Msa0340510:intron 30.0%
ACAGAAAAGATAAGGAATAG+AGG + chr2_4:61886744-61886763 Msa0340510:intron 30.0%
! TACAATGTTACTTGGTTAAG+TGG + chr2_4:61886798-61886817 Msa0340510:intron 30.0%
!!! ACAGTACTTTTGGTTTCTTT+GGG + chr2_4:61886824-61886843 Msa0340510:intron 30.0%
! GCTTTTATACTCAAATGCAT+AGG - chr2_4:61886958-61886977 None:intergenic 30.0%
TCCAAAAGTAAAATCTCAAC+TGG + chr2_4:61886979-61886998 Msa0340510:exon 30.0%
! ACCAGTTGAGATTTTACTTT+TGG - chr2_4:61886983-61887002 None:intergenic 30.0%
!! GCCATTTTGATATGAAACTT+TGG + chr2_4:61887107-61887126 Msa0340510:three_prime_UTR 30.0%
GCCAAAGTTTCATATCAAAA+TGG - chr2_4:61887111-61887130 None:intergenic 30.0%
! TTTTGATATGAAACTTTGGC+AGG + chr2_4:61887111-61887130 Msa0340510:three_prime_UTR 30.0%
TGAGTGGAAAATCAAATTTG+TGG + chr2_4:61887219-61887238 Msa0340510:three_prime_UTR 30.0%
AATTAGTGAGTTAGTGAATC+AGG + chr2_4:61887303-61887322 Msa0340510:three_prime_UTR 30.0%
ATTTCACCCAATTTAAAGGT+GGG - chr2_4:61887429-61887448 None:intergenic 30.0%
AATTTCACCCAATTTAAAGG+TGG - chr2_4:61887430-61887449 None:intergenic 30.0%
AGTGTTATCCGAAATTCTAT+CGG + chr2_4:61887501-61887520 Msa0340510:three_prime_UTR 30.0%
TAAACTCTCCGATAGAATTT+CGG - chr2_4:61887512-61887531 None:intergenic 30.0%
! AGAGTTTATCTCAGCATTTT+CGG + chr2_4:61887524-61887543 Msa0340510:three_prime_UTR 30.0%
!!! GAACTTCTTGCTATTTTTCA+AGG + chr2_4:61887579-61887598 Msa0340510:three_prime_UTR 30.0%
!! ATTAAATTGGCTCTAGACAA+TGG + chr2_4:61887603-61887622 Msa0340510:three_prime_UTR 30.0%
!! TTAAATTGGCTCTAGACAAT+GGG + chr2_4:61887604-61887623 Msa0340510:three_prime_UTR 30.0%
! TTTTAGATTGATGTCAGTCA+TGG + chr2_4:61887728-61887747 Msa0340510:three_prime_UTR 30.0%
ACAACATCAAAATAGTGAGT+CGG - chr2_4:61887837-61887856 None:intergenic 30.0%
!!! TGGTTGTTGTTTGTTTTTTG+GGG + chr2_4:61887916-61887935 Msa0340510:three_prime_UTR 30.0%
ATTCAAATTCCTGAACTGTA+TGG + chr2_4:61888131-61888150 Msa0340510:intron 30.0%
GAAAATATGAGAAGTCCAAA+AGG - chr2_4:61888255-61888274 None:intergenic 30.0%
GTAAGTGAAAGGAAAATATG+AGG - chr2_4:61888299-61888318 None:intergenic 30.0%
! GAAGTTTGATAGTAAGTGAA+AGG - chr2_4:61888310-61888329 None:intergenic 30.0%
TTGTTCCACTCACTATTTAT+AGG + chr2_4:61888401-61888420 Msa0340510:intron 30.0%
!! CTATTTCTGACTGATTTGAA+TGG + chr2_4:61888480-61888499 Msa0340510:intron 30.0%
TGGATTACTTAACTATGAAC+GGG + chr2_4:61888525-61888544 Msa0340510:intron 30.0%
! GTATGATGATGCTCTAATTT+GGG + chr2_4:61888669-61888688 Msa0340510:intron 30.0%
CTCTAATTTGGGTCTAAAAA+AGG + chr2_4:61888680-61888699 Msa0340510:intron 30.0%
TGCCTTCAATAAACATTCAA+CGG + chr2_4:61888807-61888826 Msa0340510:intron 30.0%
TACCGTTGAATGTTTATTGA+AGG - chr2_4:61888812-61888831 None:intergenic 30.0%
!!! TAACCGTTTGTCTTCTTTTT+TGG - chr2_4:61888872-61888891 None:intergenic 30.0%
GTTAACAAAGAGTAATCCAA+CGG + chr2_4:61888888-61888907 Msa0340510:intron 30.0%
!! TGTGCATTTTGAAGAAACAA+TGG + chr2_4:61888916-61888935 Msa0340510:intron 30.0%
!! CATTTTGAAGAAACAATGGA+AGG + chr2_4:61888920-61888939 Msa0340510:intron 30.0%
!! TTGTTCTTCTAAAGTTACCA+AGG + chr2_4:61889006-61889025 Msa0340510:intron 30.0%
! TCTAAAGTTACCAAGGTTTA+TGG + chr2_4:61889013-61889032 Msa0340510:intron 30.0%
TAACAGCTTTCTAAATGCAA+AGG - chr2_4:61889379-61889398 None:intergenic 30.0%
ATTGCTACTCCAATATAAAG+GGG + chr2_4:61889456-61889475 Msa0340510:intron 30.0%
TGTTAAGTACCCCTTTATAT+TGG - chr2_4:61889468-61889487 None:intergenic 30.0%
! TGGTGAATTTTGAACTAAAG+TGG - chr2_4:61889510-61889529 None:intergenic 30.0%
! TTCAGAGCTTTAGTATGATT+GGG - chr2_4:61889620-61889639 None:intergenic 30.0%
! TTTCAGAGCTTTAGTATGAT+TGG - chr2_4:61889621-61889640 None:intergenic 30.0%
GTTATATTATATTGCAGTGC+TGG + chr2_4:61889693-61889712 Msa0340510:intron 30.0%
! CGTATATTCGACAACATTTT+AGG + chr2_4:61889781-61889800 Msa0340510:intron 30.0%
! TAGTACTGAAGTTCAAACTT+AGG - chr2_4:61889972-61889991 None:intergenic 30.0%
TTGATGAATACCTTTGCATA+TGG + chr2_4:61890074-61890093 Msa0340510:intron 30.0%
TGATGAATACCTTTGCATAT+GGG + chr2_4:61890075-61890094 Msa0340510:intron 30.0%
GGGAAAATTAAAGAATGAAG+AGG + chr2_4:61890095-61890114 Msa0340510:intron 30.0%
ACAAATGTGAAGGAATAAGA+GGG - chr2_4:61890151-61890170 None:intergenic 30.0%
AACAAATGTGAAGGAATAAG+AGG - chr2_4:61890152-61890171 None:intergenic 30.0%
! TTAGTATCCCTCTATACTTT+TGG + chr2_4:61890560-61890579 Msa0340510:intron 30.0%
!! ACTTTTGGTTGTGCAATTTT+TGG + chr2_4:61890575-61890594 Msa0340510:intron 30.0%
!!! TGGAAGGTTTTAACTTTGAA+TGG - chr2_4:61890829-61890848 None:intergenic 30.0%
!! AAGAAGCAAGTATTGATAAC+AGG - chr2_4:61890855-61890874 None:intergenic 30.0%
!! TTATTGATTTCAAGTGGTTG+AGG + chr2_4:61890902-61890921 Msa0340510:intron 30.0%
!! TATTGATTTCAAGTGGTTGA+GGG + chr2_4:61890903-61890922 Msa0340510:intron 30.0%
! ACTTGTTAAAACTTGGATGA+AGG + chr2_4:61891025-61891044 Msa0340510:three_prime_UTR 30.0%
CTTGTTAAAACTTGGATGAA+GGG + chr2_4:61891026-61891045 Msa0340510:three_prime_UTR 30.0%
TTGTTAAAACTTGGATGAAG+GGG + chr2_4:61891027-61891046 Msa0340510:three_prime_UTR 30.0%
GCCATTTAACATTATTGAAC+AGG + chr2_4:61891113-61891132 Msa0340510:three_prime_UTR 30.0%
GCCTTTAGATGAAATTGAAA+AGG + chr2_4:61891226-61891245 Msa0340510:intron 30.0%
GTTGTCAAATGTATAGAACA+CGG - chr2_4:61891287-61891306 None:intergenic 30.0%
!!! ATATGCATAAGTTTTAGGGT+AGG - chr2_4:61891488-61891507 None:intergenic 30.0%
! GTATATTTTACTTCCCTAAC+GGG + chr2_4:61891639-61891658 Msa0340510:intron 30.0%
!! AAAGAGTTCTTTAGGATTAC+AGG - chr2_4:61891770-61891789 None:intergenic 30.0%
TGCAGATCAATAATTTCAAG+AGG - chr2_4:61891844-61891863 None:intergenic 30.0%
! ATATTTGCTGCAAAATGTGA+TGG + chr2_4:61891940-61891959 Msa0340510:three_prime_UTR 30.0%
TGGACTTTAAATACTACTTG+AGG + chr2_4:61891976-61891995 Msa0340510:three_prime_UTR 30.0%
GGACTTTAAATACTACTTGA+GGG + chr2_4:61891977-61891996 Msa0340510:three_prime_UTR 30.0%
!!! TACTTAATTTTAACTGTGGG+AGG + chr2_4:61892141-61892160 Msa0340510:three_prime_UTR 30.0%
!!! ACTTAATTTTAACTGTGGGA+GGG + chr2_4:61892142-61892161 Msa0340510:three_prime_UTR 30.0%
ATGAAATAACACGACGGTAT+CGG - chr2_4:61886226-61886245 None:intergenic 35.0%
TTGTAGATCACTCGGTAAAT+TGG + chr2_4:61886668-61886687 Msa0340510:intron 35.0%
CTAGAGGAACAGAAAAGATA+AGG + chr2_4:61886736-61886755 Msa0340510:intron 35.0%
! TAAGTGGAAGACAGTACTTT+TGG + chr2_4:61886814-61886833 Msa0340510:intron 35.0%
!!! GACAGTACTTTTGGTTTCTT+TGG + chr2_4:61886823-61886842 Msa0340510:intron 35.0%
! TTTGGTTTCTTTGGGAATGT+CGG + chr2_4:61886832-61886851 Msa0340510:intron 35.0%
TCCAATGTAACATTGTTGAG+TGG + chr2_4:61887167-61887186 Msa0340510:three_prime_UTR 35.0%
TCCACTCAACAATGTTACAT+TGG - chr2_4:61887171-61887190 None:intergenic 35.0%
TGCTTGATAAATCTTGTGAG+TGG + chr2_4:61887203-61887222 Msa0340510:three_prime_UTR 35.0%
TGGTGACATTAGATTGTGTT+TGG + chr2_4:61887239-61887258 Msa0340510:three_prime_UTR 35.0%
TAGATTGTGTTTGGAAAGCT+AGG + chr2_4:61887248-61887267 Msa0340510:three_prime_UTR 35.0%
TGGGTGAAATTGAATTGTGA+TGG + chr2_4:61887439-61887458 Msa0340510:three_prime_UTR 35.0%
TAGAATTTCGGATAACACTC+CGG - chr2_4:61887500-61887519 None:intergenic 35.0%
AAGAAGTTCAGCTGTGATAA+TGG - chr2_4:61887568-61887587 None:intergenic 35.0%
CTACAGAGAAGCAAATAAAG+TGG + chr2_4:61887773-61887792 Msa0340510:three_prime_UTR 35.0%
TGGCATGTTATCTCTTTGAT+TGG + chr2_4:61887896-61887915 Msa0340510:three_prime_UTR 35.0%
!!! GGTTGTTGTTTGTTTTTTGG+GGG + chr2_4:61887917-61887936 Msa0340510:three_prime_UTR 35.0%
! ATGGATTTTGCAAGAGAAGA+CGG + chr2_4:61887967-61887986 Msa0340510:three_prime_UTR 35.0%
AGAGTTCAGATGATAAGTGT+TGG - chr2_4:61887996-61888015 None:intergenic 35.0%
TTGGCATATAATGCACATCA+AGG + chr2_4:61888042-61888061 Msa0340510:three_prime_UTR 35.0%
TGGCATATAATGCACATCAA+GGG + chr2_4:61888043-61888062 Msa0340510:three_prime_UTR 35.0%
GAGGACAAAAGGTAAATGAA+AGG - chr2_4:61888277-61888296 None:intergenic 35.0%
GAAAATATGAGGAGGACAAA+AGG - chr2_4:61888288-61888307 None:intergenic 35.0%
AGTGAAAGGAAAATATGAGG+AGG - chr2_4:61888296-61888315 None:intergenic 35.0%
TGTGACCTATAAATAGTGAG+TGG - chr2_4:61888409-61888428 None:intergenic 35.0%
! GGTATGATGATGCTCTAATT+TGG + chr2_4:61888668-61888687 Msa0340510:intron 35.0%
TTCAACAGTTTCACCAACAA+TGG + chr2_4:61888962-61888981 Msa0340510:intron 35.0%
AGAAACAGATACACCATTGT+TGG - chr2_4:61888978-61888997 None:intergenic 35.0%
! ACAATGGTGTATCTGTTTCT+TGG + chr2_4:61888978-61888997 Msa0340510:intron 35.0%
AAGTTACCAAGGTTTATGGT+TGG + chr2_4:61889017-61889036 Msa0340510:intron 35.0%
TTTGTACACTCTCTTCAGAT+TGG + chr2_4:61889216-61889235 Msa0340510:intron 35.0%
AACTAAAGTGGAAAATAGGG+AGG - chr2_4:61889498-61889517 None:intergenic 35.0%
TTAGTATGATTGGGTCATGT+AGG - chr2_4:61889611-61889630 None:intergenic 35.0%
ATACGCTAATTACTCCAAAC+TGG - chr2_4:61889766-61889785 None:intergenic 35.0%
TGAAGAGACAACAAATGTGA+AGG - chr2_4:61890161-61890180 None:intergenic 35.0%
CAATAGTCAACACATTCCTT+TGG - chr2_4:61890284-61890303 None:intergenic 35.0%
! TGCACAACCAAAAGTATAGA+GGG - chr2_4:61890570-61890589 None:intergenic 35.0%
! TTGCACAACCAAAAGTATAG+AGG - chr2_4:61890571-61890590 None:intergenic 35.0%
!! TATTGATAACAGGCTTTGGA+AGG - chr2_4:61890845-61890864 None:intergenic 35.0%
!! CAAGTATTGATAACAGGCTT+TGG - chr2_4:61890849-61890868 None:intergenic 35.0%
AAGTAATTGATATTGGCGAC+TGG + chr2_4:61890944-61890963 Msa0340510:three_prime_UTR 35.0%
ATTCCTTCACTAAGGATGAA+GGG + chr2_4:61890968-61890987 Msa0340510:three_prime_UTR 35.0%
GAAAAGATATGGGAACATTC+TGG - chr2_4:61891081-61891100 None:intergenic 35.0%
! GTTCCCATATCTTTTCAACA+TGG + chr2_4:61891085-61891104 Msa0340510:three_prime_UTR 35.0%
AAGGAAGGAAAATACTGATG+TGG + chr2_4:61891245-61891264 Msa0340510:three_prime_UTR 35.0%
AGGAAGGAAAATACTGATGT+GGG + chr2_4:61891246-61891265 Msa0340510:three_prime_UTR 35.0%
ACTTACATTTGAGCATCCAT+AGG + chr2_4:61891409-61891428 Msa0340510:three_prime_UTR 35.0%
CAAATGCATTCTTACTCTGT+TGG + chr2_4:61891668-61891687 Msa0340510:intron 35.0%
!! AACTCTTTCAAGCATTGATC+TGG + chr2_4:61891740-61891759 Msa0340510:three_prime_UTR 35.0%
!! TCTTTGAAGTATTGATCTGC+AGG + chr2_4:61891785-61891804 Msa0340510:three_prime_UTR 35.0%
TTCATCATCAAAACCATTGG+TGG + chr2_4:61891876-61891895 Msa0340510:three_prime_UTR 35.0%
TCATCATCAAAACCATTGGT+GGG + chr2_4:61891877-61891896 Msa0340510:three_prime_UTR 35.0%
CATAGTCTCATAGGTAATGT+AGG + chr2_4:61892065-61892084 Msa0340510:three_prime_UTR 35.0%
! GGTAATGTAGGTTTTTGTTC+TGG + chr2_4:61892077-61892096 Msa0340510:three_prime_UTR 35.0%
! AATGTAGGTTTTTGTTCTGG+TGG + chr2_4:61892080-61892099 Msa0340510:three_prime_UTR 35.0%
! ATGTAGGTTTTTGTTCTGGT+GGG + chr2_4:61892081-61892100 Msa0340510:three_prime_UTR 35.0%
!! TTTTTAGTGATGAGGATCGG+AGG - chr2_4:61886265-61886284 None:intergenic 40.0%
!!! CGGTTTTTAGTGATGAGGAT+CGG - chr2_4:61886268-61886287 None:intergenic 40.0%
ATCCTCATCACTAAAAACCG+TGG + chr2_4:61886268-61886287 Msa0340510:CDS 40.0%
TCCTCATCACTAAAAACCGT+GGG + chr2_4:61886269-61886288 Msa0340510:CDS 40.0%
CTAAAAACCGTGGGATTGAT+TGG + chr2_4:61886278-61886297 Msa0340510:CDS 40.0%
TGCTTAATTTCAGGCAGCAA+AGG + chr2_4:61886930-61886949 Msa0340510:intron 40.0%
GTCACGAAAAATGTGCAAAG+AGG - chr2_4:61887086-61887105 None:intergenic 40.0%
ATGTCGCAGAACTCATGAAT+TGG + chr2_4:61887327-61887346 Msa0340510:three_prime_UTR 40.0%
TCATTCTCCTCCAAATACTG+AGG + chr2_4:61887375-61887394 Msa0340510:three_prime_UTR 40.0%
GATTCCATGACCTCAGTATT+TGG - chr2_4:61887388-61887407 None:intergenic 40.0%
TCATGGAATCCGAGATTTCT+TGG + chr2_4:61887398-61887417 Msa0340510:three_prime_UTR 40.0%
CATGGAATCCGAGATTTCTT+GGG + chr2_4:61887399-61887418 Msa0340510:three_prime_UTR 40.0%
! TTATCTCAGCATTTTCGGTG+AGG + chr2_4:61887529-61887548 Msa0340510:three_prime_UTR 40.0%
AGGAAGCAGTTGATTATCTC+AGG + chr2_4:61887658-61887677 Msa0340510:three_prime_UTR 40.0%
TGGCAGATGCTTTAGCTAAA+TGG + chr2_4:61887793-61887812 Msa0340510:three_prime_UTR 40.0%
GGCAGATGCTTTAGCTAAAT+GGG + chr2_4:61887794-61887813 Msa0340510:three_prime_UTR 40.0%
GCAGATGCTTTAGCTAAATG+GGG + chr2_4:61887795-61887814 Msa0340510:three_prime_UTR 40.0%
CAGATGCTTTAGCTAAATGG+GGG + chr2_4:61887796-61887815 Msa0340510:three_prime_UTR 40.0%
TGCTCACTGCCTTCATTAAT+TGG + chr2_4:61888075-61888094 Msa0340510:three_prime_UTR 40.0%
CCTGAATATCCATACAGTTC+AGG - chr2_4:61888143-61888162 None:intergenic 40.0%
CCTGAACTGTATGGATATTC+AGG + chr2_4:61888140-61888159 Msa0340510:intron 40.0%
CAAAATGCACAATTCACCGT+TGG - chr2_4:61888907-61888926 None:intergenic 40.0%
TTACCAAGGTTTATGGTTGG+TGG + chr2_4:61889020-61889039 Msa0340510:intron 40.0%
AACTACACTACCTGAGCTAA+GGG + chr2_4:61889068-61889087 Msa0340510:intron 40.0%
GAAATTCTTACCCTTAGCTC+AGG - chr2_4:61889081-61889100 None:intergenic 40.0%
AAACTCTGTGTGTGTTTGTG+TGG - chr2_4:61889194-61889213 None:intergenic 40.0%
GTCTATGAGTATGATTGGGT+TGG - chr2_4:61889719-61889738 None:intergenic 40.0%
!! CATTTTAGGAAGCCAGATCT+TGG + chr2_4:61889795-61889814 Msa0340510:intron 40.0%
! GCGAAATTTTCATGCAAAGC+TGG - chr2_4:61889896-61889915 None:intergenic 40.0%
GAAGAGGTTAAGTAGTGTGA+TGG + chr2_4:61890111-61890130 Msa0340510:intron 40.0%
ACTATATTATGCAGGGAGAG+AGG + chr2_4:61890235-61890254 Msa0340510:intron 40.0%
AAAACACCTGAGAACTCCAA+AGG + chr2_4:61890265-61890284 Msa0340510:three_prime_UTR 40.0%
CTCTCATAATCTCAACGTGT+TGG - chr2_4:61890309-61890328 None:intergenic 40.0%
CAACACGTTGAGATTATGAG+AGG + chr2_4:61890307-61890326 Msa0340510:three_prime_UTR 40.0%
CATTCCTTCACTAAGGATGA+AGG + chr2_4:61890967-61890986 Msa0340510:three_prime_UTR 40.0%
TTCCTTCACTAAGGATGAAG+GGG + chr2_4:61890969-61890988 Msa0340510:three_prime_UTR 40.0%
GGAAGGAAAATACTGATGTG+GGG + chr2_4:61891247-61891266 Msa0340510:three_prime_UTR 40.0%
! AATCGCATAGGCAGCTTTTA+AGG - chr2_4:61891309-61891328 None:intergenic 40.0%
TGCCTATGCGATTATTCTTG+TGG + chr2_4:61891316-61891335 Msa0340510:three_prime_UTR 40.0%
GCCTATGCGATTATTCTTGT+GGG + chr2_4:61891317-61891336 Msa0340510:three_prime_UTR 40.0%
TGGATTTGAATGTGTCTCAG+AGG + chr2_4:61891341-61891360 Msa0340510:three_prime_UTR 40.0%
GCATTTGTAATTGCCCGTTA+GGG - chr2_4:61891655-61891674 None:intergenic 40.0%
TGCATTTGTAATTGCCCGTT+AGG - chr2_4:61891656-61891675 None:intergenic 40.0%
TGCATTCTTACTCTGTTGGT+TGG + chr2_4:61891672-61891691 Msa0340510:intron 40.0%
TTATGATGCAGAGATGTCAG+TGG + chr2_4:61891696-61891715 Msa0340510:intron 40.0%
!! TCTTTCAAGCATTGATCTGG+AGG + chr2_4:61891743-61891762 Msa0340510:three_prime_UTR 40.0%
!! ATCAAAACCATTGGTGGGTT+TGG + chr2_4:61891882-61891901 Msa0340510:three_prime_UTR 40.0%
TACTACTTGAGGGAAGAGAA+AGG + chr2_4:61891987-61892006 Msa0340510:three_prime_UTR 40.0%
ACTACTTGAGGGAAGAGAAA+GGG + chr2_4:61891988-61892007 Msa0340510:three_prime_UTR 40.0%
ATGAGACTATGCACACTTCA+AGG - chr2_4:61892056-61892075 None:intergenic 40.0%
TGAAGTGTGCATAGTCTCAT+AGG + chr2_4:61892056-61892075 Msa0340510:three_prime_UTR 40.0%
TGTCACGGAAATGACATGAA+TGG + chr2_4:61892231-61892250 Msa0340510:three_prime_UTR 40.0%
ATGTCTGTAGCTACTGTTCA+TGG - chr2_4:61892308-61892327 None:intergenic 40.0%
!! AATAACACGACGGTATCGGT+CGG - chr2_4:61886222-61886241 None:intergenic 45.0%
!!! TCCCACGGTTTTTAGTGATG+AGG - chr2_4:61886273-61886292 None:intergenic 45.0%
ATACCCACGGAGAAGAATTC+CGG - chr2_4:61886344-61886363 None:intergenic 45.0%
ACTTCTTTGATTGGCACTCG+AGG - chr2_4:61887018-61887037 None:intergenic 45.0%
AAACTTTGGCAGGAGCTGTT+GGG + chr2_4:61887121-61887140 Msa0340510:three_prime_UTR 45.0%
TCGCAGAACTCATGAATTGG+TGG + chr2_4:61887330-61887349 Msa0340510:three_prime_UTR 45.0%
TCCTCCAAATACTGAGGTCA+TGG + chr2_4:61887381-61887400 Msa0340510:three_prime_UTR 45.0%
TCCATGACCTCAGTATTTGG+AGG - chr2_4:61887385-61887404 None:intergenic 45.0%
GGTCTGCCCACCTTTAAATT+GGG + chr2_4:61887420-61887439 Msa0340510:three_prime_UTR 45.0%
!! TGTGATGGTGCTGTGAATCA+AGG + chr2_4:61887454-61887473 Msa0340510:three_prime_UTR 45.0%
!! ATGGTGCTGTGAATCAAGGT+GGG + chr2_4:61887458-61887477 Msa0340510:three_prime_UTR 45.0%
GGGTTAAGTGCAAGTTATGC+CGG + chr2_4:61887478-61887497 Msa0340510:three_prime_UTR 45.0%
! TCAGCATTTTCGGTGAGGTT+GGG + chr2_4:61887534-61887553 Msa0340510:three_prime_UTR 45.0%
! GTTTTGCTAGCTGATAGAGC+TGG + chr2_4:61887876-61887895 Msa0340510:three_prime_UTR 45.0%
CAACTACACTACCTGAGCTA+AGG + chr2_4:61889067-61889086 Msa0340510:intron 45.0%
!! CACATTCCTTTGGAGTTCTC+AGG - chr2_4:61890274-61890293 None:intergenic 45.0%
TGAGAGGAGTAAGATCTGAC+AGG + chr2_4:61890323-61890342 Msa0340510:three_prime_UTR 45.0%
ATCCCCTTCATCCTTAGTGA+AGG - chr2_4:61890974-61890993 None:intergenic 45.0%
ACTAAGGATGAAGGGGATGA+AGG + chr2_4:61890976-61890995 Msa0340510:three_prime_UTR 45.0%
CTAAGGATGAAGGGGATGAA+GGG + chr2_4:61890977-61890996 Msa0340510:three_prime_UTR 45.0%
TAAGGATGAAGGGGATGAAG+GGG + chr2_4:61890978-61890997 Msa0340510:three_prime_UTR 45.0%
GCCCACAAGAATAATCGCAT+AGG - chr2_4:61891321-61891340 None:intergenic 45.0%
ATGCGATTATTCTTGTGGGC+TGG + chr2_4:61891321-61891340 Msa0340510:three_prime_UTR 45.0%
ACAGCAGAAGAACGAACCTA+TGG - chr2_4:61891428-61891447 None:intergenic 45.0%
! GTATTGATCTGCAGGACTTC+TGG + chr2_4:61891793-61891812 Msa0340510:three_prime_UTR 45.0%
! GTTTTCTCCAAACCCACCAA+TGG - chr2_4:61891892-61891911 None:intergenic 45.0%
TGCTGCAAAATGTGATGGCA+AGG + chr2_4:61891945-61891964 Msa0340510:three_prime_UTR 45.0%
CAAAATGTGATGGCAAGGCA+AGG + chr2_4:61891950-61891969 Msa0340510:three_prime_UTR 45.0%
! AGTTTCTAGACCTGCAAGCA+TGG + chr2_4:61892192-61892211 Msa0340510:three_prime_UTR 45.0%
! GTTTCTAGACCTGCAAGCAT+GGG + chr2_4:61892193-61892212 Msa0340510:three_prime_UTR 45.0%
! TTGTCATTTCCCATGCTTGC+AGG - chr2_4:61892205-61892224 None:intergenic 45.0%
CACTGTTCACAGTTGCTAGA+AGG - chr2_4:61892370-61892389 None:intergenic 45.0%
ATGAAGGATCCGCTAGGGTT+TGG - chr2_4:61886194-61886213 None:intergenic 50.0%
! AAACCCTAGCGGATCCTTCA+TGG + chr2_4:61886193-61886212 Msa0340510:exon 50.0%
CTTTGATTGGCACTCGAGGA+AGG - chr2_4:61887014-61887033 None:intergenic 50.0%
GAAACTTTGGCAGGAGCTGT+TGG + chr2_4:61887120-61887139 Msa0340510:three_prime_UTR 50.0%
TGGGCAGACCCAAGAAATCT+CGG - chr2_4:61887410-61887429 None:intergenic 50.0%
GGGTCTGCCCACCTTTAAAT+TGG + chr2_4:61887419-61887438 Msa0340510:three_prime_UTR 50.0%
!! GATGGTGCTGTGAATCAAGG+TGG + chr2_4:61887457-61887476 Msa0340510:three_prime_UTR 50.0%
! CTCAGCATTTTCGGTGAGGT+TGG + chr2_4:61887533-61887552 Msa0340510:three_prime_UTR 50.0%
GCAGTTGATTATCTCAGGCG+TGG + chr2_4:61887663-61887682 Msa0340510:three_prime_UTR 50.0%
CTGCCACCAACCATAAACCT+TGG - chr2_4:61889026-61889045 None:intergenic 50.0%
GTGTTCGTCGTGTTCCAGTT+TGG + chr2_4:61889749-61889768 Msa0340510:intron 50.0%
CGACTGGCATTCCTTCACTA+AGG + chr2_4:61890960-61890979 Msa0340510:three_prime_UTR 50.0%
TTTCTCTCTCTCACGCTCCA+AGG - chr2_4:61892014-61892033 None:intergenic 50.0%
TTGGAGCGTGAGAGAGAGAA+AGG + chr2_4:61892013-61892032 Msa0340510:three_prime_UTR 50.0%
TGGAGCGTGAGAGAGAGAAA+GGG + chr2_4:61892014-61892033 Msa0340510:three_prime_UTR 50.0%
AGAAAGGGCCATGGAGAGAA+AGG + chr2_4:61892029-61892048 Msa0340510:three_prime_UTR 50.0%
GAAAGGGCCATGGAGAGAAA+GGG + chr2_4:61892030-61892049 Msa0340510:three_prime_UTR 50.0%
TTCAAGGCCCTTTCTCTCCA+TGG - chr2_4:61892040-61892059 None:intergenic 50.0%
CTCTCTCCTCCAAACCCTAG+CGG + chr2_4:61886182-61886201 Msa0340510:five_prime_UTR 55.0%
AAGGATCCGCTAGGGTTTGG+AGG - chr2_4:61886191-61886210 None:intergenic 55.0%
AGGCCATGAAGGATCCGCTA+GGG - chr2_4:61886199-61886218 None:intergenic 55.0%
CACGGAGAAGAATTCCGGTG+CGG - chr2_4:61886339-61886358 None:intergenic 55.0%
GCACCGGAATTCTTCTCCGT+GGG + chr2_4:61886338-61886357 Msa0340510:CDS 55.0%
! GCATTTTCGGTGAGGTTGGG+AGG + chr2_4:61887537-61887556 Msa0340510:three_prime_UTR 55.0%
TGAGGGAAGAGAAAGGGCCT+TGG + chr2_4:61891994-61892013 Msa0340510:three_prime_UTR 55.0%
GTGAGAGAGAGAAAGGGCCA+TGG + chr2_4:61892020-61892039 Msa0340510:three_prime_UTR 55.0%
GAGGCCATGAAGGATCCGCT+AGG - chr2_4:61886200-61886219 None:intergenic 60.0%
! GTATCGGTCGGAGGCCATGA+AGG - chr2_4:61886210-61886229 None:intergenic 60.0%
!! AACACGACGGTATCGGTCGG+AGG - chr2_4:61886219-61886238 None:intergenic 60.0%
AATTCCGGTGCGGTGGTCGA+TGG - chr2_4:61886329-61886348 None:intergenic 60.0%
GGAGAAGAATTCCGGTGCGG+TGG - chr2_4:61886336-61886355 None:intergenic 60.0%
CGCACCGGAATTCTTCTCCG+TGG + chr2_4:61886337-61886356 Msa0340510:CDS 60.0%
GTGATGGCAAGGCAAGGCTC+TGG + chr2_4:61891956-61891975 Msa0340510:three_prime_UTR 60.0%
GTCACCATCGACCACCGCAC+CGG + chr2_4:61886322-61886341 Msa0340510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 61886138 61892484 61886138 ID=Msa0340510;Name=Msa0340510
chr2_4 mRNA 61886138 61892484 61886138 ID=Msa0340510-mRNA-1;Parent=Msa0340510;Name=Msa0340510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=74|1|1|1|0|0|6|2397|64
chr2_4 exon 61886138 61886359 61886138 ID=Msa0340510-mRNA-1:exon:19603;Parent=Msa0340510-mRNA-1
chr2_4 exon 61886943 61888096 61886943 ID=Msa0340510-mRNA-1:exon:19604;Parent=Msa0340510-mRNA-1
chr2_4 exon 61890249 61890344 61890249 ID=Msa0340510-mRNA-1:exon:19605;Parent=Msa0340510-mRNA-1
chr2_4 exon 61890916 61891134 61890916 ID=Msa0340510-mRNA-1:exon:19606;Parent=Msa0340510-mRNA-1
chr2_4 exon 61891234 61891430 61891234 ID=Msa0340510-mRNA-1:exon:19607;Parent=Msa0340510-mRNA-1
chr2_4 exon 61891707 61892484 61891707 ID=Msa0340510-mRNA-1:exon:19608;Parent=Msa0340510-mRNA-1
chr2_4 five_prime_UTR 61886138 61886211 61886138 ID=Msa0340510-mRNA-1:five_prime_utr;Parent=Msa0340510-mRNA-1
chr2_4 CDS 61886212 61886359 61886212 ID=Msa0340510-mRNA-1:cds;Parent=Msa0340510-mRNA-1
chr2_4 CDS 61886943 61886989 61886943 ID=Msa0340510-mRNA-1:cds;Parent=Msa0340510-mRNA-1
chr2_4 three_prime_UTR 61886990 61888096 61886990 ID=Msa0340510-mRNA-1:three_prime_utr;Parent=Msa0340510-mRNA-1
chr2_4 three_prime_UTR 61890249 61890344 61890249 ID=Msa0340510-mRNA-1:three_prime_utr;Parent=Msa0340510-mRNA-1
chr2_4 three_prime_UTR 61890916 61891134 61890916 ID=Msa0340510-mRNA-1:three_prime_utr;Parent=Msa0340510-mRNA-1
chr2_4 three_prime_UTR 61891234 61891430 61891234 ID=Msa0340510-mRNA-1:three_prime_utr;Parent=Msa0340510-mRNA-1
chr2_4 three_prime_UTR 61891707 61892484 61891707 ID=Msa0340510-mRNA-1:three_prime_utr;Parent=Msa0340510-mRNA-1
Gene Sequence

>Msa0340510

ATGGCCTCCGACCGATACCGTCGTGTTATTTCATTCTTCAGTTCTGACAACCTCCGATCCTCATCACTAAAAACCGTGGGATTGATTGGTTTATTTTCAGATCTGGGCACGTCACCATCGACCACCGCACCGGAATTCTTCTCCGTGGGCAGCAAAGGTTCCTATGCATTTGAGTATAAAAGCTTCCAAAAGTAA
Protein sequence

>Msa0340510

MASDRYRRVISFFSSDNLRSSSLKTVGLIGLFSDLGTSPSTTAPEFFSVGSKGSYAFEYKSFQK*