Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343160 | XP_003611730.1 | 91.304 | 253 | 14 | 4 | 1 | 251 | 1 | 247 | 1.62e-133 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343160 | sp|Q9FHA7|HEC1_ARATH | 57.513 | 193 | 68 | 4 | 17 | 205 | 4 | 186 | 6.07e-51 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343160 | G7K6N1 | 91.304 | 253 | 14 | 4 | 1 | 251 | 1 | 247 | 7.73e-134 | 386 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0343160 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0343160 | Msa0714880 | 0.808868 | 2.507078e-50 | -8.615850e-47 |
| Msa0343160 | Msa0836460 | 0.804542 | 2.054583e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343160 | MtrunA17_Chr5g0402161 | 91.304 | 253 | 14 | 4 | 1 | 251 | 1 | 247 | 1.49e-137 | 386 |
| Msa0343160 | MtrunA17_Chr8g0375121 | 58.052 | 267 | 79 | 11 | 1 | 251 | 1 | 250 | 8.29e-66 | 204 |
| Msa0343160 | MtrunA17_Chr3g0134001 | 54.545 | 209 | 78 | 7 | 25 | 216 | 40 | 248 | 3.68e-58 | 186 |
| Msa0343160 | MtrunA17_Chr8g0384141 | 75.824 | 91 | 22 | 0 | 114 | 204 | 87 | 177 | 8.25e-47 | 156 |
| Msa0343160 | MtrunA17_Chr2g0330641 | 57.252 | 131 | 48 | 3 | 84 | 207 | 227 | 356 | 3.40e-32 | 121 |
| Msa0343160 | MtrunA17_Chr8g0341421 | 63.636 | 99 | 32 | 1 | 113 | 207 | 296 | 394 | 3.27e-29 | 114 |
| Msa0343160 | MtrunA17_Chr7g0243041 | 68.966 | 58 | 18 | 0 | 147 | 204 | 32 | 89 | 3.38e-23 | 92.0 |
| Msa0343160 | MtrunA17_Chr5g0435021 | 55.696 | 79 | 33 | 1 | 127 | 203 | 202 | 280 | 1.66e-20 | 88.6 |
| Msa0343160 | MtrunA17_Chr1g0207301 | 53.731 | 67 | 31 | 0 | 137 | 203 | 284 | 350 | 1.72e-17 | 80.9 |
| Msa0343160 | MtrunA17_Chr1g0152651 | 62.963 | 54 | 20 | 0 | 150 | 203 | 283 | 336 | 3.21e-17 | 80.1 |
| Msa0343160 | MtrunA17_Chr5g0393721 | 62.963 | 54 | 20 | 0 | 150 | 203 | 233 | 286 | 4.85e-17 | 79.0 |
| Msa0343160 | MtrunA17_Chr1g0207311 | 51.948 | 77 | 32 | 2 | 132 | 203 | 182 | 258 | 6.84e-17 | 78.2 |
| Msa0343160 | MtrunA17_Chr3g0134741 | 55.556 | 63 | 28 | 0 | 141 | 203 | 229 | 291 | 2.71e-16 | 77.0 |
| Msa0343160 | MtrunA17_Chr4g0074161 | 54.286 | 70 | 27 | 1 | 148 | 212 | 213 | 282 | 8.11e-15 | 73.2 |
| Msa0343160 | MtrunA17_Chr1g0190731 | 51.429 | 70 | 34 | 0 | 134 | 203 | 186 | 255 | 9.26e-15 | 72.8 |
| Msa0343160 | MtrunA17_Chr1g0179061 | 42.169 | 83 | 42 | 1 | 141 | 217 | 170 | 252 | 3.49e-13 | 67.4 |
| Msa0343160 | MtrunA17_Chr2g0311101 | 46.667 | 75 | 33 | 1 | 137 | 204 | 158 | 232 | 7.97e-13 | 67.0 |
| Msa0343160 | MtrunA17_Chr4g0014771 | 50.769 | 65 | 31 | 1 | 142 | 205 | 119 | 183 | 4.30e-12 | 63.2 |
| Msa0343160 | MtrunA17_Chr2g0323091 | 48.148 | 54 | 28 | 0 | 151 | 204 | 146 | 199 | 6.85e-11 | 61.2 |
| Msa0343160 | MtrunA17_Chr3g0095391 | 39.437 | 71 | 43 | 0 | 152 | 222 | 320 | 390 | 7.00e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343160 | AT5G67060.1 | 57.513 | 193 | 68 | 4 | 17 | 205 | 4 | 186 | 6.17e-52 | 169 |
| Msa0343160 | AT3G50330.1 | 54.338 | 219 | 69 | 6 | 14 | 224 | 4 | 199 | 6.87e-51 | 166 |
| Msa0343160 | AT5G67060.2 | 57.065 | 184 | 66 | 3 | 25 | 205 | 1 | 174 | 7.70e-49 | 161 |
| Msa0343160 | AT4G00120.1 | 67.708 | 96 | 28 | 1 | 116 | 208 | 87 | 182 | 1.24e-39 | 136 |
| Msa0343160 | AT3G21330.1 | 54.472 | 123 | 48 | 1 | 92 | 206 | 212 | 334 | 4.17e-38 | 137 |
| Msa0343160 | AT5G09750.1 | 76.667 | 90 | 21 | 0 | 114 | 203 | 92 | 181 | 2.15e-35 | 126 |
| Msa0343160 | AT5G01305.1 | 69.492 | 59 | 18 | 0 | 142 | 200 | 38 | 96 | 7.74e-22 | 89.4 |
| Msa0343160 | AT5G43175.1 | 50.725 | 69 | 34 | 0 | 135 | 203 | 126 | 194 | 8.24e-19 | 82.8 |
| Msa0343160 | AT4G33880.1 | 59.677 | 62 | 25 | 0 | 142 | 203 | 267 | 328 | 1.62e-18 | 84.0 |
| Msa0343160 | AT5G37800.1 | 56.164 | 73 | 25 | 1 | 138 | 203 | 191 | 263 | 4.16e-18 | 82.0 |
| Msa0343160 | AT1G27740.1 | 51.471 | 68 | 33 | 0 | 136 | 203 | 162 | 229 | 5.61e-18 | 81.3 |
| Msa0343160 | AT1G66470.1 | 67.273 | 55 | 18 | 0 | 149 | 203 | 203 | 257 | 5.76e-18 | 81.6 |
| Msa0343160 | AT2G14760.1 | 58.065 | 62 | 26 | 0 | 142 | 203 | 238 | 299 | 1.81e-17 | 80.9 |
| Msa0343160 | AT4G30980.1 | 40.000 | 115 | 68 | 1 | 89 | 203 | 79 | 192 | 9.75e-17 | 78.6 |
| Msa0343160 | AT2G24260.2 | 52.703 | 74 | 29 | 1 | 136 | 203 | 24 | 97 | 1.41e-16 | 77.0 |
| Msa0343160 | AT4G30980.2 | 39.200 | 125 | 75 | 1 | 79 | 203 | 117 | 240 | 1.96e-16 | 78.2 |
| Msa0343160 | AT2G24260.1 | 52.703 | 74 | 29 | 1 | 136 | 203 | 127 | 200 | 3.60e-16 | 77.4 |
| Msa0343160 | AT5G58010.1 | 54.545 | 66 | 30 | 0 | 138 | 203 | 96 | 161 | 9.46e-15 | 72.8 |
| Msa0343160 | AT2G14760.3 | 48.000 | 75 | 26 | 1 | 142 | 203 | 238 | 312 | 3.34e-14 | 71.6 |
Find 58 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTGGTTTAATGGTTTC+TGG | 0.032783 | 3_1:-1153890 | None:intergenic |
| CTTTCTCTTTGGTGGTTTAA+TGG | 0.129321 | 3_1:-1153897 | None:intergenic |
| ACAAACAATGATTTCCCTTA+TGG | 0.235794 | 3_1:+1153635 | Msa0343160:CDS |
| ATCTTCACATTCTTTCTCTT+TGG | 0.246196 | 3_1:-1153908 | None:intergenic |
| AATTATTCTTCTTTGCTTAG+AGG | 0.274535 | 3_1:+1154169 | Msa0343160:CDS |
| AAAGAATTAGTGAAAGAATA+AGG | 0.285456 | 3_1:+1153972 | Msa0343160:CDS |
| GAGATTGAGAGTGTTGTTAT+TGG | 0.293893 | 3_1:-1153606 | None:intergenic |
| TTATTGGTATTGCTATAAAA+AGG | 0.306430 | 3_1:-1153590 | None:intergenic |
| TTGGTGGTTTAATGGTTTCT+GGG | 0.314323 | 3_1:-1153889 | None:intergenic |
| TGTCTTGCTGCTACACTTTG+TGG | 0.337683 | 3_1:-1153941 | None:intergenic |
| TTCACATTCTTTCTCTTTGG+TGG | 0.352271 | 3_1:-1153905 | None:intergenic |
| TTCAAACGTTGGAACAAGTT+GGG | 0.370508 | 3_1:+1154089 | Msa0343160:CDS |
| TTGAATGTTGTTGGGTTTCA+AGG | 0.375435 | 3_1:+1154124 | Msa0343160:CDS |
| GTTTCTGGGTCTATGTTAAT+CGG | 0.384832 | 3_1:-1153875 | None:intergenic |
| TGATGGGATTTGAACTCTGT+TGG | 0.387374 | 3_1:-1153759 | None:intergenic |
| GCCATTGAATTCTTCTTCTC+CGG | 0.399282 | 3_1:-1153812 | None:intergenic |
| ACTAAGCATTTGTTTGGAAG+TGG | 0.402015 | 3_1:-1154221 | None:intergenic |
| AATAGACCTTTGAATGTTGT+TGG | 0.403761 | 3_1:+1154115 | Msa0343160:CDS |
| GTTACATTTGAGTTTCCATA+AGG | 0.409196 | 3_1:-1153650 | None:intergenic |
| TGAGGACATACTGAAAACTT+TGG | 0.409321 | 3_1:+1153496 | Msa0343160:CDS |
| TGGAAGTGGGACCCACCATT+TGG | 0.414540 | 3_1:-1154207 | None:intergenic |
| GATGGGATTTGAACTCTGTT+GGG | 0.418955 | 3_1:-1153758 | None:intergenic |
| GTGTCAACTAAGCATTTGTT+TGG | 0.421668 | 3_1:-1154227 | None:intergenic |
| CAATTCTTCATTCTCCTATC+CGG | 0.438986 | 3_1:+1153793 | Msa0343160:CDS |
| TTCATCACCTTGCCAAATGG+TGG | 0.447650 | 3_1:+1154195 | Msa0343160:CDS |
| GAGGACATACTGAAAACTTT+GGG | 0.447841 | 3_1:+1153497 | Msa0343160:CDS |
| TGAAGAGGATAAGACAATAA+TGG | 0.449931 | 3_1:-1153704 | None:intergenic |
| ATAGACCTTTGAATGTTGTT+GGG | 0.458742 | 3_1:+1154116 | Msa0343160:CDS |
| AGCGACGGCGGTGGTGTCAT+TGG | 0.462107 | 3_1:-1153731 | None:intergenic |
| ATAGGAGAATGAAGAATTGT+TGG | 0.471030 | 3_1:-1153789 | None:intergenic |
| TTACATTTGAGTTTCCATAA+GGG | 0.484501 | 3_1:-1153649 | None:intergenic |
| GTTCAAACGTTGGAACAAGT+TGG | 0.486495 | 3_1:+1154088 | Msa0343160:CDS |
| GATGACAATGATGATGCAAA+TGG | 0.498844 | 3_1:+1153544 | Msa0343160:CDS |
| AATTGTTGGTTCTTCCTGAT+GGG | 0.499420 | 3_1:-1153775 | None:intergenic |
| TGAATTCTTCTTCTCCGGAT+AGG | 0.501360 | 3_1:-1153807 | None:intergenic |
| GAATTGTTGGTTCTTCCTGA+TGG | 0.503297 | 3_1:-1153776 | None:intergenic |
| TTGTTCATCACCTTGCCAAA+TGG | 0.505893 | 3_1:+1154192 | Msa0343160:CDS |
| AACAGAGTTCAAATCCCATC+AGG | 0.513806 | 3_1:+1153761 | Msa0343160:CDS |
| TGTTGTTGGGTTTCAAGGAG+TGG | 0.515205 | 3_1:+1154129 | Msa0343160:CDS |
| TCTGAAAACATTCATGGATG+AGG | 0.543834 | 3_1:+1153478 | None:intergenic |
| CTAAGCATTTGTTTGGAAGT+GGG | 0.548242 | 3_1:-1154220 | None:intergenic |
| TTGGGTTGAAGCGACGGCGG+TGG | 0.553364 | 3_1:-1153740 | None:intergenic |
| GAAGAAACAAGTTCAAACGT+TGG | 0.554879 | 3_1:+1154078 | Msa0343160:CDS |
| TCATCACCTTGCCAAATGGT+GGG | 0.555921 | 3_1:+1154196 | Msa0343160:CDS |
| TGAAACCCAACAACATTCAA+AGG | 0.560330 | 3_1:-1154121 | None:intergenic |
| TCAAACGTTGGAACAAGTTG+GGG | 0.569007 | 3_1:+1154090 | Msa0343160:CDS |
| ACTCTGTTGGGTTGAAGCGA+CGG | 0.575367 | 3_1:-1153746 | None:intergenic |
| GGTGTCATTGGTTGTTGAAG+AGG | 0.589982 | 3_1:-1153719 | None:intergenic |
| AAAGAATGTGAAGATTTCAA+AGG | 0.590303 | 3_1:+1153916 | Msa0343160:CDS |
| TCCGGAGAAGAAGAATTCAA+TGG | 0.605617 | 3_1:+1153811 | Msa0343160:CDS |
| AATGGTGGATTGATCAATGA+AGG | 0.607991 | 3_1:-1153686 | None:intergenic |
| AGAGGATAAGACAATAATGG+TGG | 0.609384 | 3_1:-1153701 | None:intergenic |
| AGAGATGATATTTCGTATAG+CGG | 0.621555 | 3_1:+1153844 | Msa0343160:CDS |
| GGGAAATGTTGAAAGTAACA+TGG | 0.631569 | 3_1:+1153517 | Msa0343160:CDS |
| GTGGGACCCACCATTTGGCA+AGG | 0.634945 | 3_1:-1154202 | None:intergenic |
| CTGTTGGGTTGAAGCGACGG+CGG | 0.671897 | 3_1:-1153743 | None:intergenic |
| ATATTACAAAGATTAGTACC+TGG | 0.683168 | 3_1:+1153995 | Msa0343160:CDS |
| TTACAAAGATTAGTACCTGG+TGG | 0.689802 | 3_1:+1153998 | Msa0343160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGGTATTGCTATAAAA+AGG | - | chr3_1:1153593-1153612 | None:intergenic | 20.0% |
| !! | AAAGAATTAGTGAAAGAATA+AGG | + | chr3_1:1153972-1153991 | Msa0343160:CDS | 20.0% |
| !! | TTATTGGTATTGCTATAAAA+AGG | - | chr3_1:1153593-1153612 | None:intergenic | 20.0% |
| !! | AAAGAATTAGTGAAAGAATA+AGG | + | chr3_1:1153972-1153991 | Msa0343160:CDS | 20.0% |
| ! | AAAAAGGTTCATATGAATCA+GGG | - | chr3_1:1153577-1153596 | None:intergenic | 25.0% |
| ! | TAAAAAGGTTCATATGAATC+AGG | - | chr3_1:1153578-1153597 | None:intergenic | 25.0% |
| !! | TTACATTTGAGTTTCCATAA+GGG | - | chr3_1:1153652-1153671 | None:intergenic | 25.0% |
| ! | AAAGAATGTGAAGATTTCAA+AGG | + | chr3_1:1153916-1153935 | Msa0343160:CDS | 25.0% |
| ! | ATATTACAAAGATTAGTACC+TGG | + | chr3_1:1153995-1154014 | Msa0343160:CDS | 25.0% |
| ! | AATTATTCTTCTTTGCTTAG+AGG | + | chr3_1:1154169-1154188 | Msa0343160:CDS | 25.0% |
| ! | AAAAAGGTTCATATGAATCA+GGG | - | chr3_1:1153577-1153596 | None:intergenic | 25.0% |
| ! | TAAAAAGGTTCATATGAATC+AGG | - | chr3_1:1153578-1153597 | None:intergenic | 25.0% |
| !! | TTACATTTGAGTTTCCATAA+GGG | - | chr3_1:1153652-1153671 | None:intergenic | 25.0% |
| ! | AAAGAATGTGAAGATTTCAA+AGG | + | chr3_1:1153916-1153935 | Msa0343160:CDS | 25.0% |
| ! | ATATTACAAAGATTAGTACC+TGG | + | chr3_1:1153995-1154014 | Msa0343160:CDS | 25.0% |
| ! | AATTATTCTTCTTTGCTTAG+AGG | + | chr3_1:1154169-1154188 | Msa0343160:CDS | 25.0% |
| ACAAACAATGATTTCCCTTA+TGG | + | chr3_1:1153635-1153654 | Msa0343160:CDS | 30.0% | |
| ! | GTTACATTTGAGTTTCCATA+AGG | - | chr3_1:1153653-1153672 | None:intergenic | 30.0% |
| TGAAGAGGATAAGACAATAA+TGG | - | chr3_1:1153707-1153726 | None:intergenic | 30.0% | |
| ATAGGAGAATGAAGAATTGT+TGG | - | chr3_1:1153792-1153811 | None:intergenic | 30.0% | |
| AGAGATGATATTTCGTATAG+CGG | + | chr3_1:1153844-1153863 | Msa0343160:CDS | 30.0% | |
| ATCTTCACATTCTTTCTCTT+TGG | - | chr3_1:1153911-1153930 | None:intergenic | 30.0% | |
| AATAGACCTTTGAATGTTGT+TGG | + | chr3_1:1154115-1154134 | Msa0343160:CDS | 30.0% | |
| ATAGACCTTTGAATGTTGTT+GGG | + | chr3_1:1154116-1154135 | Msa0343160:CDS | 30.0% | |
| ACAAACAATGATTTCCCTTA+TGG | + | chr3_1:1153635-1153654 | Msa0343160:CDS | 30.0% | |
| ! | GTTACATTTGAGTTTCCATA+AGG | - | chr3_1:1153653-1153672 | None:intergenic | 30.0% |
| TGAAGAGGATAAGACAATAA+TGG | - | chr3_1:1153707-1153726 | None:intergenic | 30.0% | |
| ATAGGAGAATGAAGAATTGT+TGG | - | chr3_1:1153792-1153811 | None:intergenic | 30.0% | |
| AGAGATGATATTTCGTATAG+CGG | + | chr3_1:1153844-1153863 | Msa0343160:CDS | 30.0% | |
| ATCTTCACATTCTTTCTCTT+TGG | - | chr3_1:1153911-1153930 | None:intergenic | 30.0% | |
| AATAGACCTTTGAATGTTGT+TGG | + | chr3_1:1154115-1154134 | Msa0343160:CDS | 30.0% | |
| ATAGACCTTTGAATGTTGTT+GGG | + | chr3_1:1154116-1154135 | Msa0343160:CDS | 30.0% | |
| TGAGGACATACTGAAAACTT+TGG | + | chr3_1:1153496-1153515 | Msa0343160:CDS | 35.0% | |
| GAGGACATACTGAAAACTTT+GGG | + | chr3_1:1153497-1153516 | Msa0343160:CDS | 35.0% | |
| GGGAAATGTTGAAAGTAACA+TGG | + | chr3_1:1153517-1153536 | Msa0343160:CDS | 35.0% | |
| ! | GATGACAATGATGATGCAAA+TGG | + | chr3_1:1153544-1153563 | Msa0343160:CDS | 35.0% |
| !! | GAGATTGAGAGTGTTGTTAT+TGG | - | chr3_1:1153609-1153628 | None:intergenic | 35.0% |
| !! | AATGGTGGATTGATCAATGA+AGG | - | chr3_1:1153689-1153708 | None:intergenic | 35.0% |
| AGAGGATAAGACAATAATGG+TGG | - | chr3_1:1153704-1153723 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCTTCCTGAT+GGG | - | chr3_1:1153778-1153797 | None:intergenic | 35.0% |
| CAATTCTTCATTCTCCTATC+CGG | + | chr3_1:1153793-1153812 | Msa0343160:CDS | 35.0% | |
| ! | GTTTCTGGGTCTATGTTAAT+CGG | - | chr3_1:1153878-1153897 | None:intergenic | 35.0% |
| ! | TTGGTGGTTTAATGGTTTCT+GGG | - | chr3_1:1153892-1153911 | None:intergenic | 35.0% |
| ! | TTTGGTGGTTTAATGGTTTC+TGG | - | chr3_1:1153893-1153912 | None:intergenic | 35.0% |
| ! | CTTTCTCTTTGGTGGTTTAA+TGG | - | chr3_1:1153900-1153919 | None:intergenic | 35.0% |
| TTCACATTCTTTCTCTTTGG+TGG | - | chr3_1:1153908-1153927 | None:intergenic | 35.0% | |
| TTACAAAGATTAGTACCTGG+TGG | + | chr3_1:1153998-1154017 | Msa0343160:CDS | 35.0% | |
| GAAGAAACAAGTTCAAACGT+TGG | + | chr3_1:1154078-1154097 | Msa0343160:CDS | 35.0% | |
| TTCAAACGTTGGAACAAGTT+GGG | + | chr3_1:1154089-1154108 | Msa0343160:CDS | 35.0% | |
| TGAAACCCAACAACATTCAA+AGG | - | chr3_1:1154124-1154143 | None:intergenic | 35.0% | |
| TTGAATGTTGTTGGGTTTCA+AGG | + | chr3_1:1154124-1154143 | Msa0343160:CDS | 35.0% | |
| CTAAGCATTTGTTTGGAAGT+GGG | - | chr3_1:1154223-1154242 | None:intergenic | 35.0% | |
| ACTAAGCATTTGTTTGGAAG+TGG | - | chr3_1:1154224-1154243 | None:intergenic | 35.0% | |
| TGAGGACATACTGAAAACTT+TGG | + | chr3_1:1153496-1153515 | Msa0343160:CDS | 35.0% | |
| GAGGACATACTGAAAACTTT+GGG | + | chr3_1:1153497-1153516 | Msa0343160:CDS | 35.0% | |
| GGGAAATGTTGAAAGTAACA+TGG | + | chr3_1:1153517-1153536 | Msa0343160:CDS | 35.0% | |
| ! | GATGACAATGATGATGCAAA+TGG | + | chr3_1:1153544-1153563 | Msa0343160:CDS | 35.0% |
| !! | GAGATTGAGAGTGTTGTTAT+TGG | - | chr3_1:1153609-1153628 | None:intergenic | 35.0% |
| !! | AATGGTGGATTGATCAATGA+AGG | - | chr3_1:1153689-1153708 | None:intergenic | 35.0% |
| AGAGGATAAGACAATAATGG+TGG | - | chr3_1:1153704-1153723 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCTTCCTGAT+GGG | - | chr3_1:1153778-1153797 | None:intergenic | 35.0% |
| CAATTCTTCATTCTCCTATC+CGG | + | chr3_1:1153793-1153812 | Msa0343160:CDS | 35.0% | |
| ! | GTTTCTGGGTCTATGTTAAT+CGG | - | chr3_1:1153878-1153897 | None:intergenic | 35.0% |
| ! | TTGGTGGTTTAATGGTTTCT+GGG | - | chr3_1:1153892-1153911 | None:intergenic | 35.0% |
| ! | TTTGGTGGTTTAATGGTTTC+TGG | - | chr3_1:1153893-1153912 | None:intergenic | 35.0% |
| ! | CTTTCTCTTTGGTGGTTTAA+TGG | - | chr3_1:1153900-1153919 | None:intergenic | 35.0% |
| TTCACATTCTTTCTCTTTGG+TGG | - | chr3_1:1153908-1153927 | None:intergenic | 35.0% | |
| TTACAAAGATTAGTACCTGG+TGG | + | chr3_1:1153998-1154017 | Msa0343160:CDS | 35.0% | |
| GAAGAAACAAGTTCAAACGT+TGG | + | chr3_1:1154078-1154097 | Msa0343160:CDS | 35.0% | |
| TTCAAACGTTGGAACAAGTT+GGG | + | chr3_1:1154089-1154108 | Msa0343160:CDS | 35.0% | |
| TGAAACCCAACAACATTCAA+AGG | - | chr3_1:1154124-1154143 | None:intergenic | 35.0% | |
| TTGAATGTTGTTGGGTTTCA+AGG | + | chr3_1:1154124-1154143 | Msa0343160:CDS | 35.0% | |
| CTAAGCATTTGTTTGGAAGT+GGG | - | chr3_1:1154223-1154242 | None:intergenic | 35.0% | |
| ACTAAGCATTTGTTTGGAAG+TGG | - | chr3_1:1154224-1154243 | None:intergenic | 35.0% | |
| GATGGGATTTGAACTCTGTT+GGG | - | chr3_1:1153761-1153780 | None:intergenic | 40.0% | |
| TGATGGGATTTGAACTCTGT+TGG | - | chr3_1:1153762-1153781 | None:intergenic | 40.0% | |
| AACAGAGTTCAAATCCCATC+AGG | + | chr3_1:1153761-1153780 | Msa0343160:CDS | 40.0% | |
| !! | GAATTGTTGGTTCTTCCTGA+TGG | - | chr3_1:1153779-1153798 | None:intergenic | 40.0% |
| TGAATTCTTCTTCTCCGGAT+AGG | - | chr3_1:1153810-1153829 | None:intergenic | 40.0% | |
| TCCGGAGAAGAAGAATTCAA+TGG | + | chr3_1:1153811-1153830 | Msa0343160:CDS | 40.0% | |
| GCCATTGAATTCTTCTTCTC+CGG | - | chr3_1:1153815-1153834 | None:intergenic | 40.0% | |
| AGTACCTGGTGGAACAAAAA+TGG | + | chr3_1:1154009-1154028 | Msa0343160:CDS | 40.0% | |
| GTTCAAACGTTGGAACAAGT+TGG | + | chr3_1:1154088-1154107 | Msa0343160:CDS | 40.0% | |
| TCAAACGTTGGAACAAGTTG+GGG | + | chr3_1:1154090-1154109 | Msa0343160:CDS | 40.0% | |
| TTGTTCATCACCTTGCCAAA+TGG | + | chr3_1:1154192-1154211 | Msa0343160:CDS | 40.0% | |
| GATGGGATTTGAACTCTGTT+GGG | - | chr3_1:1153761-1153780 | None:intergenic | 40.0% | |
| TGATGGGATTTGAACTCTGT+TGG | - | chr3_1:1153762-1153781 | None:intergenic | 40.0% | |
| AACAGAGTTCAAATCCCATC+AGG | + | chr3_1:1153761-1153780 | Msa0343160:CDS | 40.0% | |
| !! | GAATTGTTGGTTCTTCCTGA+TGG | - | chr3_1:1153779-1153798 | None:intergenic | 40.0% |
| TGAATTCTTCTTCTCCGGAT+AGG | - | chr3_1:1153810-1153829 | None:intergenic | 40.0% | |
| TCCGGAGAAGAAGAATTCAA+TGG | + | chr3_1:1153811-1153830 | Msa0343160:CDS | 40.0% | |
| GCCATTGAATTCTTCTTCTC+CGG | - | chr3_1:1153815-1153834 | None:intergenic | 40.0% | |
| AGTACCTGGTGGAACAAAAA+TGG | + | chr3_1:1154009-1154028 | Msa0343160:CDS | 40.0% | |
| GTTCAAACGTTGGAACAAGT+TGG | + | chr3_1:1154088-1154107 | Msa0343160:CDS | 40.0% | |
| TCAAACGTTGGAACAAGTTG+GGG | + | chr3_1:1154090-1154109 | Msa0343160:CDS | 40.0% | |
| TTGTTCATCACCTTGCCAAA+TGG | + | chr3_1:1154192-1154211 | Msa0343160:CDS | 40.0% | |
| !! | GGTGTCATTGGTTGTTGAAG+AGG | - | chr3_1:1153722-1153741 | None:intergenic | 45.0% |
| TGTCTTGCTGCTACACTTTG+TGG | - | chr3_1:1153944-1153963 | None:intergenic | 45.0% | |
| !! | GTGTCCATTTTTGTTCCACC+AGG | - | chr3_1:1154016-1154035 | None:intergenic | 45.0% |
| TGTTGTTGGGTTTCAAGGAG+TGG | + | chr3_1:1154129-1154148 | Msa0343160:CDS | 45.0% | |
| TTCATCACCTTGCCAAATGG+TGG | + | chr3_1:1154195-1154214 | Msa0343160:CDS | 45.0% | |
| TCATCACCTTGCCAAATGGT+GGG | + | chr3_1:1154196-1154215 | Msa0343160:CDS | 45.0% | |
| !! | GGTGTCATTGGTTGTTGAAG+AGG | - | chr3_1:1153722-1153741 | None:intergenic | 45.0% |
| TGTCTTGCTGCTACACTTTG+TGG | - | chr3_1:1153944-1153963 | None:intergenic | 45.0% | |
| !! | GTGTCCATTTTTGTTCCACC+AGG | - | chr3_1:1154016-1154035 | None:intergenic | 45.0% |
| TGTTGTTGGGTTTCAAGGAG+TGG | + | chr3_1:1154129-1154148 | Msa0343160:CDS | 45.0% | |
| TTCATCACCTTGCCAAATGG+TGG | + | chr3_1:1154195-1154214 | Msa0343160:CDS | 45.0% | |
| TCATCACCTTGCCAAATGGT+GGG | + | chr3_1:1154196-1154215 | Msa0343160:CDS | 45.0% | |
| !! | ACTCTGTTGGGTTGAAGCGA+CGG | - | chr3_1:1153749-1153768 | None:intergenic | 50.0% |
| !! | ACTCTGTTGGGTTGAAGCGA+CGG | - | chr3_1:1153749-1153768 | None:intergenic | 50.0% |
| TGGAAGTGGGACCCACCATT+TGG | - | chr3_1:1154210-1154229 | None:intergenic | 55.0% | |
| TGGAAGTGGGACCCACCATT+TGG | - | chr3_1:1154210-1154229 | None:intergenic | 55.0% | |
| !! | CTGTTGGGTTGAAGCGACGG+CGG | - | chr3_1:1153746-1153765 | None:intergenic | 60.0% |
| GTGGGACCCACCATTTGGCA+AGG | - | chr3_1:1154205-1154224 | None:intergenic | 60.0% | |
| !! | CTGTTGGGTTGAAGCGACGG+CGG | - | chr3_1:1153746-1153765 | None:intergenic | 60.0% |
| GTGGGACCCACCATTTGGCA+AGG | - | chr3_1:1154205-1154224 | None:intergenic | 60.0% | |
| !! | AGCGACGGCGGTGGTGTCAT+TGG | - | chr3_1:1153734-1153753 | None:intergenic | 65.0% |
| !! | TTGGGTTGAAGCGACGGCGG+TGG | - | chr3_1:1153743-1153762 | None:intergenic | 65.0% |
| !! | AGCGACGGCGGTGGTGTCAT+TGG | - | chr3_1:1153734-1153753 | None:intergenic | 65.0% |
| !! | TTGGGTTGAAGCGACGGCGG+TGG | - | chr3_1:1153743-1153762 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1153491 | 1154246 | 1153491 | ID=Msa0343160;Name=Msa0343160 |
| chr3_1 | mRNA | 1153491 | 1154246 | 1153491 | ID=Msa0343160-mRNA-1;Parent=Msa0343160;Name=Msa0343160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|251 |
| chr3_1 | exon | 1153491 | 1154246 | 1153491 | ID=Msa0343160-mRNA-1:exon:357;Parent=Msa0343160-mRNA-1 |
| chr3_1 | CDS | 1153491 | 1154246 | 1153491 | ID=Msa0343160-mRNA-1:cds;Parent=Msa0343160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
