AlfalfaGEDB | Msa0343160

M. sativa cultivar zhongmu-4 / Msa0343160

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343160	XP_003611730.1	91.304	253	14	4	1	251	1	247	1.62e-133	386

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343160	sp\|Q9FHA7\|HEC1_ARATH	57.513	193	68	4	17	205	4	186	6.07e-51	169

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343160	G7K6N1	91.304	253	14	4	1	251	1	247	7.73e-134	386

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0343160	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0343160	Msa0714880	0.808868	2.507078e-50	-8.615850e-47
Msa0343160	Msa0836460	0.804542	2.054583e-49	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343160	MtrunA17_Chr5g0402161	91.304	253	14	4	1	251	1	247	1.49e-137	386
Msa0343160	MtrunA17_Chr8g0375121	58.052	267	79	11	1	251	1	250	8.29e-66	204
Msa0343160	MtrunA17_Chr3g0134001	54.545	209	78	7	25	216	40	248	3.68e-58	186
Msa0343160	MtrunA17_Chr8g0384141	75.824	91	22	0	114	204	87	177	8.25e-47	156
Msa0343160	MtrunA17_Chr2g0330641	57.252	131	48	3	84	207	227	356	3.40e-32	121
Msa0343160	MtrunA17_Chr8g0341421	63.636	99	32	1	113	207	296	394	3.27e-29	114
Msa0343160	MtrunA17_Chr7g0243041	68.966	58	18	0	147	204	32	89	3.38e-23	92.0
Msa0343160	MtrunA17_Chr5g0435021	55.696	79	33	1	127	203	202	280	1.66e-20	88.6
Msa0343160	MtrunA17_Chr1g0207301	53.731	67	31	0	137	203	284	350	1.72e-17	80.9
Msa0343160	MtrunA17_Chr1g0152651	62.963	54	20	0	150	203	283	336	3.21e-17	80.1

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343160	AT5G67060.1	57.513	193	68	4	17	205	4	186	6.17e-52	169
Msa0343160	AT3G50330.1	54.338	219	69	6	14	224	4	199	6.87e-51	166
Msa0343160	AT5G67060.2	57.065	184	66	3	25	205	1	174	7.70e-49	161
Msa0343160	AT4G00120.1	67.708	96	28	1	116	208	87	182	1.24e-39	136
Msa0343160	AT3G21330.1	54.472	123	48	1	92	206	212	334	4.17e-38	137
Msa0343160	AT5G09750.1	76.667	90	21	0	114	203	92	181	2.15e-35	126
Msa0343160	AT5G01305.1	69.492	59	18	0	142	200	38	96	7.74e-22	89.4
Msa0343160	AT5G43175.1	50.725	69	34	0	135	203	126	194	8.24e-19	82.8
Msa0343160	AT4G33880.1	59.677	62	25	0	142	203	267	328	1.62e-18	84.0
Msa0343160	AT5G37800.1	56.164	73	25	1	138	203	191	263	4.16e-18	82.0

Showing 1 to 10 of 19 entries

Previous1 2Next

Find 58 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGTGAAGATTTCAA+AGG	0.590303	3_1:+1153916	Msa0343160:CDS
AAAGAATTAGTGAAAGAATA+AGG	0.285456	3_1:+1153972	Msa0343160:CDS
AACAGAGTTCAAATCCCATC+AGG	0.513806	3_1:+1153761	Msa0343160:CDS
AATAGACCTTTGAATGTTGT+TGG	0.403761	3_1:+1154115	Msa0343160:CDS
AATGGTGGATTGATCAATGA+AGG	0.607991	3_1:-1153686	None:intergenic
AATTATTCTTCTTTGCTTAG+AGG	0.274535	3_1:+1154169	Msa0343160:CDS
AATTGTTGGTTCTTCCTGAT+GGG	0.499420	3_1:-1153775	None:intergenic
ACAAACAATGATTTCCCTTA+TGG	0.235794	3_1:+1153635	Msa0343160:CDS
ACTAAGCATTTGTTTGGAAG+TGG	0.402015	3_1:-1154221	None:intergenic
ACTCTGTTGGGTTGAAGCGA+CGG	0.575367	3_1:-1153746	None:intergenic

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAAACAATGATTTCCCTTA+TGG	+	chr3_1:1153635-1153654	Msa0343160:CDS	30.0%
TGAAGAGGATAAGACAATAA+TGG	-	chr3_1:1153707-1153726	None:intergenic	30.0%
ATAGGAGAATGAAGAATTGT+TGG	-	chr3_1:1153792-1153811	None:intergenic	30.0%
AGAGATGATATTTCGTATAG+CGG	+	chr3_1:1153844-1153863	Msa0343160:CDS	30.0%
ATCTTCACATTCTTTCTCTT+TGG	-	chr3_1:1153911-1153930	None:intergenic	30.0%
AATAGACCTTTGAATGTTGT+TGG	+	chr3_1:1154115-1154134	Msa0343160:CDS	30.0%
ATAGACCTTTGAATGTTGTT+GGG	+	chr3_1:1154116-1154135	Msa0343160:CDS	30.0%
ACAAACAATGATTTCCCTTA+TGG	+	chr3_1:1153635-1153654	Msa0343160:CDS	30.0%
TGAAGAGGATAAGACAATAA+TGG	-	chr3_1:1153707-1153726	None:intergenic	30.0%
ATAGGAGAATGAAGAATTGT+TGG	-	chr3_1:1153792-1153811	None:intergenic	30.0%

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	1153491	1154246	1153491	ID=Msa0343160;Name=Msa0343160
chr3_1	mRNA	1153491	1154246	1153491	ID=Msa0343160-mRNA-1;Parent=Msa0343160;Name=Msa0343160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|251
chr3_1	exon	1153491	1154246	1153491	ID=Msa0343160-mRNA-1:exon:357;Parent=Msa0343160-mRNA-1
chr3_1	CDS	1153491	1154246	1153491	ID=Msa0343160-mRNA-1:cds;Parent=Msa0343160-mRNA-1

Gene Sequence

>Msa0343160

ATGGATGAGGACATACTGAAAACTTTGGGAAATGTTGAAAGTAACATGGACATGATGACAATGATGATGCAAATGGAAAAGTTCCCTGATTCATATGAACCTTTTTATAGCAATACCAATAACAACACTCTCAATCTCAATCTCACAAACAATGATTTCCCTTATGGAAACTCAAATGTAACTTCATCACTCACACCTTCATTGATCAATCCACCATTATTGTCTTATCCTCTTCAACAACCAATGACACCACCGCCGTCGCTTCAACCCAACAGAGTTCAAATCCCATCAGGAAGAACCAACAATTCTTCATTCTCCTATCCGGAGAAGAAGAATTCAATGGCAGCAATGAGAGAGATGATATTTCGTATAGCGGTTATGCAACCGATTAACATAGACCCAGAAACCATTAAACCACCAAAGAGAAAGAATGTGAAGATTTCAAAGGATCCACAAAGTGTAGCAGCAAGACATAGAAGAGAAAGAATTAGTGAAAGAATAAGGATATTACAAAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACGTTGGAACAAGTTGGGGCAAATAGACCTTTGAATGTTGTTGGGTTTCAAGGAGTGGTTTCTAATGCTAATTTTAATTATTCTTCTTTGCTTAGAGGTTGTTCATCACCTTGCCAAATGGTGGGTCCCACTTCCAAACAAATGCTTAGTTGA

Protein sequence

>Msa0343160

MDEDILKTLGNVESNMDMMTMMMQMEKFPDSYEPFYSNTNNNTLNLNLTNNDFPYGNSNVTSSLTPSLINPPLLSYPLQQPMTPPPSLQPNRVQIPSGRTNNSSFSYPEKKNSMAAMREMIFRIAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPLNVVGFQGVVSNANFNYSSLLRGCSSPCQMVGPTSKQMLS*