Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714880 | XP_003611730.1 | 92.430 | 251 | 13 | 2 | 1 | 249 | 1 | 247 | 3.42e-138 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714880 | sp|Q9FHA7|HEC1_ARATH | 56.771 | 192 | 69 | 4 | 17 | 203 | 4 | 186 | 1.97e-49 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714880 | G7K6N1 | 92.430 | 251 | 13 | 2 | 1 | 249 | 1 | 247 | 1.64e-138 | 398 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0714880 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714880 | Msa0836460 | 0.897743 | 1.045671e-76 | -8.615850e-47 |
| Msa0343160 | Msa0714880 | 0.808868 | 2.507078e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714880 | MtrunA17_Chr5g0402161 | 92.430 | 251 | 13 | 2 | 1 | 249 | 1 | 247 | 3.15e-142 | 398 |
| Msa0714880 | MtrunA17_Chr8g0375121 | 57.143 | 266 | 81 | 10 | 1 | 249 | 1 | 250 | 2.50e-65 | 203 |
| Msa0714880 | MtrunA17_Chr3g0134001 | 55.024 | 209 | 75 | 8 | 25 | 214 | 40 | 248 | 4.46e-58 | 185 |
| Msa0714880 | MtrunA17_Chr8g0384141 | 74.725 | 91 | 23 | 0 | 112 | 202 | 87 | 177 | 2.17e-46 | 155 |
| Msa0714880 | MtrunA17_Chr2g0330641 | 64.486 | 107 | 36 | 2 | 100 | 205 | 251 | 356 | 7.34e-32 | 120 |
| Msa0714880 | MtrunA17_Chr8g0341421 | 63.636 | 99 | 32 | 1 | 111 | 205 | 296 | 394 | 3.32e-29 | 114 |
| Msa0714880 | MtrunA17_Chr7g0243041 | 68.966 | 58 | 18 | 0 | 145 | 202 | 32 | 89 | 3.13e-23 | 92.0 |
| Msa0714880 | MtrunA17_Chr5g0435021 | 55.696 | 79 | 33 | 1 | 125 | 201 | 202 | 280 | 1.68e-20 | 88.6 |
| Msa0714880 | MtrunA17_Chr1g0207301 | 53.731 | 67 | 31 | 0 | 135 | 201 | 284 | 350 | 1.47e-17 | 80.9 |
| Msa0714880 | MtrunA17_Chr1g0152651 | 62.963 | 54 | 20 | 0 | 148 | 201 | 283 | 336 | 2.80e-17 | 80.1 |
| Msa0714880 | MtrunA17_Chr5g0393721 | 62.963 | 54 | 20 | 0 | 148 | 201 | 233 | 286 | 4.44e-17 | 79.3 |
| Msa0714880 | MtrunA17_Chr1g0207311 | 51.948 | 77 | 32 | 2 | 130 | 201 | 182 | 258 | 6.52e-17 | 78.2 |
| Msa0714880 | MtrunA17_Chr3g0134741 | 55.556 | 63 | 28 | 0 | 139 | 201 | 229 | 291 | 2.39e-16 | 77.0 |
| Msa0714880 | MtrunA17_Chr4g0074161 | 54.286 | 70 | 27 | 1 | 146 | 210 | 213 | 282 | 6.84e-15 | 73.6 |
| Msa0714880 | MtrunA17_Chr1g0190731 | 51.429 | 70 | 34 | 0 | 132 | 201 | 186 | 255 | 8.04e-15 | 72.8 |
| Msa0714880 | MtrunA17_Chr1g0179061 | 42.169 | 83 | 42 | 1 | 139 | 215 | 170 | 252 | 2.95e-13 | 67.4 |
| Msa0714880 | MtrunA17_Chr2g0311101 | 46.667 | 75 | 33 | 1 | 135 | 202 | 158 | 232 | 7.65e-13 | 67.0 |
| Msa0714880 | MtrunA17_Chr4g0014771 | 50.769 | 65 | 31 | 1 | 140 | 203 | 119 | 183 | 4.27e-12 | 63.2 |
| Msa0714880 | MtrunA17_Chr2g0323091 | 48.148 | 54 | 28 | 0 | 149 | 202 | 146 | 199 | 6.99e-11 | 61.2 |
| Msa0714880 | MtrunA17_Chr3g0095391 | 40.580 | 69 | 41 | 0 | 152 | 220 | 322 | 390 | 7.66e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714880 | AT5G67060.1 | 56.771 | 192 | 69 | 4 | 17 | 203 | 4 | 186 | 2.00e-50 | 165 |
| Msa0714880 | AT3G50330.1 | 54.587 | 218 | 68 | 7 | 14 | 222 | 4 | 199 | 2.68e-50 | 164 |
| Msa0714880 | AT5G67060.2 | 56.284 | 183 | 67 | 3 | 25 | 203 | 1 | 174 | 2.10e-47 | 157 |
| Msa0714880 | AT4G00120.1 | 66.667 | 96 | 29 | 1 | 114 | 206 | 87 | 182 | 3.74e-39 | 135 |
| Msa0714880 | AT3G21330.1 | 54.472 | 123 | 48 | 1 | 90 | 204 | 212 | 334 | 4.14e-38 | 137 |
| Msa0714880 | AT5G09750.1 | 75.556 | 90 | 22 | 0 | 112 | 201 | 92 | 181 | 7.00e-35 | 124 |
| Msa0714880 | AT5G01305.1 | 69.492 | 59 | 18 | 0 | 140 | 198 | 38 | 96 | 7.41e-22 | 89.4 |
| Msa0714880 | AT5G43175.1 | 50.725 | 69 | 34 | 0 | 133 | 201 | 126 | 194 | 7.91e-19 | 82.8 |
| Msa0714880 | AT4G33880.1 | 59.677 | 62 | 25 | 0 | 140 | 201 | 267 | 328 | 1.51e-18 | 84.0 |
| Msa0714880 | AT5G37800.1 | 56.164 | 73 | 25 | 1 | 136 | 201 | 191 | 263 | 3.58e-18 | 82.4 |
| Msa0714880 | AT1G27740.1 | 51.471 | 68 | 33 | 0 | 134 | 201 | 162 | 229 | 5.12e-18 | 81.3 |
| Msa0714880 | AT1G66470.1 | 67.273 | 55 | 18 | 0 | 147 | 201 | 203 | 257 | 5.32e-18 | 81.6 |
| Msa0714880 | AT2G14760.1 | 58.065 | 62 | 26 | 0 | 140 | 201 | 238 | 299 | 1.54e-17 | 80.9 |
| Msa0714880 | AT4G30980.1 | 40.000 | 115 | 68 | 1 | 87 | 201 | 79 | 192 | 7.62e-17 | 78.6 |
| Msa0714880 | AT2G24260.2 | 52.703 | 74 | 29 | 1 | 134 | 201 | 24 | 97 | 1.21e-16 | 77.0 |
| Msa0714880 | AT4G30980.2 | 40.000 | 115 | 68 | 1 | 87 | 201 | 127 | 240 | 1.79e-16 | 78.2 |
| Msa0714880 | AT2G24260.1 | 52.703 | 74 | 29 | 1 | 134 | 201 | 127 | 200 | 3.05e-16 | 77.4 |
| Msa0714880 | AT5G58010.1 | 54.545 | 66 | 30 | 0 | 136 | 201 | 96 | 161 | 8.62e-15 | 72.8 |
| Msa0714880 | AT2G14760.3 | 48.000 | 75 | 26 | 1 | 140 | 201 | 238 | 312 | 3.35e-14 | 71.6 |
| Msa0714880 | AT4G09180.1 | 43.210 | 81 | 45 | 1 | 122 | 201 | 167 | 247 | 7.37e-11 | 61.2 |
Find 58 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTGGTTTAATGGTTTC+TGG | 0.032783 | 5_1:-7701311 | None:intergenic |
| CTTTCTCTTTGGTGGTTTAA+TGG | 0.129321 | 5_1:-7701318 | None:intergenic |
| ACAAACAATGATTTCCCTTA+TGG | 0.235794 | 5_1:+7701062 | Msa0714880:CDS |
| ATCTTCACATTCTTTCTCTT+TGG | 0.246196 | 5_1:-7701329 | None:intergenic |
| AATTATTCTTCTTTGCTTAG+AGG | 0.274535 | 5_1:+7701590 | Msa0714880:CDS |
| AAAGAATTAGTGAAAGAATA+AGG | 0.285456 | 5_1:+7701393 | Msa0714880:CDS |
| GAGATTGAGAGTGTTGTTAT+TGG | 0.293893 | 5_1:-7701033 | None:intergenic |
| TTATTGGTATTGCTATAAAA+AGG | 0.306430 | 5_1:-7701017 | None:intergenic |
| TTGGTGGTTTAATGGTTTCT+GGG | 0.314323 | 5_1:-7701310 | None:intergenic |
| TGTCTTGCTGCTACACTTTG+TGG | 0.337683 | 5_1:-7701362 | None:intergenic |
| TTCACATTCTTTCTCTTTGG+TGG | 0.352271 | 5_1:-7701326 | None:intergenic |
| TGAAGCGACGGCGGTGTCAT+TGG | 0.364263 | 5_1:-7701155 | None:intergenic |
| TTCAAACGTTGGAACAAGTT+GGG | 0.370508 | 5_1:+7701510 | Msa0714880:CDS |
| TTGAATGTTGTTGGGTTTCA+AGG | 0.375435 | 5_1:+7701545 | Msa0714880:CDS |
| GTTTCTGGGTCTATGTTAAT+CGG | 0.384832 | 5_1:-7701296 | None:intergenic |
| TGATGGGATTTGAACTCTGT+TGG | 0.387374 | 5_1:-7701180 | None:intergenic |
| GCCATTGAATTCTTCTTCTC+CGG | 0.399282 | 5_1:-7701233 | None:intergenic |
| ACTAAGCATTTGTTTGGAAG+TGG | 0.402015 | 5_1:-7701642 | None:intergenic |
| AATAGACCTTTGAATGTTGT+TGG | 0.403761 | 5_1:+7701536 | Msa0714880:CDS |
| GTTACATTTGAGTTTCCATA+AGG | 0.409196 | 5_1:-7701077 | None:intergenic |
| TGAGGACATACTGAAAACTT+TGG | 0.409321 | 5_1:+7700923 | Msa0714880:CDS |
| TGGAAGTGGGACCCACCATT+TGG | 0.414540 | 5_1:-7701628 | None:intergenic |
| GATGGGATTTGAACTCTGTT+GGG | 0.418955 | 5_1:-7701179 | None:intergenic |
| GTGTCAACTAAGCATTTGTT+TGG | 0.421668 | 5_1:-7701648 | None:intergenic |
| CAATTCTTCATTCTCCTATC+CGG | 0.438986 | 5_1:+7701214 | Msa0714880:CDS |
| TTCATCACCTTGCCAAATGG+TGG | 0.447650 | 5_1:+7701616 | Msa0714880:CDS |
| GAGGACATACTGAAAACTTT+GGG | 0.447841 | 5_1:+7700924 | Msa0714880:CDS |
| ATAGACCTTTGAATGTTGTT+GGG | 0.458742 | 5_1:+7701537 | Msa0714880:CDS |
| ATAGGAGAATGAAGAATTGT+TGG | 0.471030 | 5_1:-7701210 | None:intergenic |
| TTACATTTGAGTTTCCATAA+GGG | 0.484501 | 5_1:-7701076 | None:intergenic |
| GTTCAAACGTTGGAACAAGT+TGG | 0.486495 | 5_1:+7701509 | Msa0714880:CDS |
| GATGACAATGATGATGCAAA+TGG | 0.498844 | 5_1:+7700971 | Msa0714880:CDS |
| AATTGTTGGTTCTTCCTGAT+GGG | 0.499420 | 5_1:-7701196 | None:intergenic |
| TGAATTCTTCTTCTCCGGAT+AGG | 0.501360 | 5_1:-7701228 | None:intergenic |
| GAATTGTTGGTTCTTCCTGA+TGG | 0.503297 | 5_1:-7701197 | None:intergenic |
| TTGTTCATCACCTTGCCAAA+TGG | 0.505893 | 5_1:+7701613 | Msa0714880:CDS |
| AACAGAGTTCAAATCCCATC+AGG | 0.513806 | 5_1:+7701182 | Msa0714880:CDS |
| TGTTGTTGGGTTTCAAGGAG+TGG | 0.515205 | 5_1:+7701550 | Msa0714880:CDS |
| TCTGAAAACATTCATGGATG+AGG | 0.543834 | 5_1:+7700905 | None:intergenic |
| CTAAGCATTTGTTTGGAAGT+GGG | 0.548242 | 5_1:-7701641 | None:intergenic |
| GGTGTCATTGGTTGTTGAAG+AGG | 0.548657 | 5_1:-7701143 | None:intergenic |
| GAGAGAGATGATATTTCGTA+TGG | 0.550671 | 5_1:+7701262 | Msa0714880:CDS |
| GAAGAAACAAGTTCAAACGT+TGG | 0.554879 | 5_1:+7701499 | Msa0714880:CDS |
| TCATCACCTTGCCAAATGGT+GGG | 0.555921 | 5_1:+7701617 | Msa0714880:CDS |
| TGAAACCCAACAACATTCAA+AGG | 0.560330 | 5_1:-7701542 | None:intergenic |
| TCAAACGTTGGAACAAGTTG+GGG | 0.569007 | 5_1:+7701511 | Msa0714880:CDS |
| ACTCTGTTGGGTTGAAGCGA+CGG | 0.575367 | 5_1:-7701167 | None:intergenic |
| AAAGAATGTGAAGATTTCAA+AGG | 0.590303 | 5_1:+7701337 | Msa0714880:CDS |
| TGAAGAGGATAAGACAATGG+TGG | 0.592428 | 5_1:-7701128 | None:intergenic |
| TCCGGAGAAGAAGAATTCAA+TGG | 0.605617 | 5_1:+7701232 | Msa0714880:CDS |
| AATGGTGGATTGATCAATGA+AGG | 0.629442 | 5_1:-7701113 | None:intergenic |
| AGAGATGATATTTCGTATGG+CGG | 0.630427 | 5_1:+7701265 | Msa0714880:CDS |
| GGGAAATGTTGAAAGTAACA+TGG | 0.631569 | 5_1:+7700944 | Msa0714880:CDS |
| GTGGGACCCACCATTTGGCA+AGG | 0.634945 | 5_1:-7701623 | None:intergenic |
| CTGTTGGGTTGAAGCGACGG+CGG | 0.671897 | 5_1:-7701164 | None:intergenic |
| ATATTACAAAGATTAGTACC+TGG | 0.683168 | 5_1:+7701416 | Msa0714880:CDS |
| TTACAAAGATTAGTACCTGG+TGG | 0.689802 | 5_1:+7701419 | Msa0714880:CDS |
| TGTTGAAGAGGATAAGACAA+TGG | 0.700529 | 5_1:-7701131 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGGTATTGCTATAAAA+AGG | - | chr5_1:7701020-7701039 | None:intergenic | 20.0% |
| !! | AAAGAATTAGTGAAAGAATA+AGG | + | chr5_1:7701393-7701412 | Msa0714880:CDS | 20.0% |
| !! | TTATTGGTATTGCTATAAAA+AGG | - | chr5_1:7701020-7701039 | None:intergenic | 20.0% |
| !! | AAAGAATTAGTGAAAGAATA+AGG | + | chr5_1:7701393-7701412 | Msa0714880:CDS | 20.0% |
| ! | AAAAAGGTTCATATGAATCA+GGG | - | chr5_1:7701004-7701023 | None:intergenic | 25.0% |
| ! | TAAAAAGGTTCATATGAATC+AGG | - | chr5_1:7701005-7701024 | None:intergenic | 25.0% |
| !! | TTACATTTGAGTTTCCATAA+GGG | - | chr5_1:7701079-7701098 | None:intergenic | 25.0% |
| ! | AAAGAATGTGAAGATTTCAA+AGG | + | chr5_1:7701337-7701356 | Msa0714880:CDS | 25.0% |
| ! | ATATTACAAAGATTAGTACC+TGG | + | chr5_1:7701416-7701435 | Msa0714880:CDS | 25.0% |
| ! | AATTATTCTTCTTTGCTTAG+AGG | + | chr5_1:7701590-7701609 | Msa0714880:CDS | 25.0% |
| ! | AAAAAGGTTCATATGAATCA+GGG | - | chr5_1:7701004-7701023 | None:intergenic | 25.0% |
| ! | TAAAAAGGTTCATATGAATC+AGG | - | chr5_1:7701005-7701024 | None:intergenic | 25.0% |
| !! | TTACATTTGAGTTTCCATAA+GGG | - | chr5_1:7701079-7701098 | None:intergenic | 25.0% |
| ! | AAAGAATGTGAAGATTTCAA+AGG | + | chr5_1:7701337-7701356 | Msa0714880:CDS | 25.0% |
| ! | ATATTACAAAGATTAGTACC+TGG | + | chr5_1:7701416-7701435 | Msa0714880:CDS | 25.0% |
| ! | AATTATTCTTCTTTGCTTAG+AGG | + | chr5_1:7701590-7701609 | Msa0714880:CDS | 25.0% |
| ACAAACAATGATTTCCCTTA+TGG | + | chr5_1:7701062-7701081 | Msa0714880:CDS | 30.0% | |
| ! | GTTACATTTGAGTTTCCATA+AGG | - | chr5_1:7701080-7701099 | None:intergenic | 30.0% |
| ATAGGAGAATGAAGAATTGT+TGG | - | chr5_1:7701213-7701232 | None:intergenic | 30.0% | |
| ATCTTCACATTCTTTCTCTT+TGG | - | chr5_1:7701332-7701351 | None:intergenic | 30.0% | |
| AATAGACCTTTGAATGTTGT+TGG | + | chr5_1:7701536-7701555 | Msa0714880:CDS | 30.0% | |
| ATAGACCTTTGAATGTTGTT+GGG | + | chr5_1:7701537-7701556 | Msa0714880:CDS | 30.0% | |
| ACAAACAATGATTTCCCTTA+TGG | + | chr5_1:7701062-7701081 | Msa0714880:CDS | 30.0% | |
| ! | GTTACATTTGAGTTTCCATA+AGG | - | chr5_1:7701080-7701099 | None:intergenic | 30.0% |
| ATAGGAGAATGAAGAATTGT+TGG | - | chr5_1:7701213-7701232 | None:intergenic | 30.0% | |
| ATCTTCACATTCTTTCTCTT+TGG | - | chr5_1:7701332-7701351 | None:intergenic | 30.0% | |
| AATAGACCTTTGAATGTTGT+TGG | + | chr5_1:7701536-7701555 | Msa0714880:CDS | 30.0% | |
| ATAGACCTTTGAATGTTGTT+GGG | + | chr5_1:7701537-7701556 | Msa0714880:CDS | 30.0% | |
| TGAGGACATACTGAAAACTT+TGG | + | chr5_1:7700923-7700942 | Msa0714880:CDS | 35.0% | |
| GAGGACATACTGAAAACTTT+GGG | + | chr5_1:7700924-7700943 | Msa0714880:CDS | 35.0% | |
| GGGAAATGTTGAAAGTAACA+TGG | + | chr5_1:7700944-7700963 | Msa0714880:CDS | 35.0% | |
| ! | GATGACAATGATGATGCAAA+TGG | + | chr5_1:7700971-7700990 | Msa0714880:CDS | 35.0% |
| !! | GAGATTGAGAGTGTTGTTAT+TGG | - | chr5_1:7701036-7701055 | None:intergenic | 35.0% |
| !! | AATGGTGGATTGATCAATGA+AGG | - | chr5_1:7701116-7701135 | None:intergenic | 35.0% |
| TGTTGAAGAGGATAAGACAA+TGG | - | chr5_1:7701134-7701153 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCTTCCTGAT+GGG | - | chr5_1:7701199-7701218 | None:intergenic | 35.0% |
| CAATTCTTCATTCTCCTATC+CGG | + | chr5_1:7701214-7701233 | Msa0714880:CDS | 35.0% | |
| GAGAGAGATGATATTTCGTA+TGG | + | chr5_1:7701262-7701281 | Msa0714880:CDS | 35.0% | |
| AGAGATGATATTTCGTATGG+CGG | + | chr5_1:7701265-7701284 | Msa0714880:CDS | 35.0% | |
| ! | GTTTCTGGGTCTATGTTAAT+CGG | - | chr5_1:7701299-7701318 | None:intergenic | 35.0% |
| ! | TTGGTGGTTTAATGGTTTCT+GGG | - | chr5_1:7701313-7701332 | None:intergenic | 35.0% |
| ! | TTTGGTGGTTTAATGGTTTC+TGG | - | chr5_1:7701314-7701333 | None:intergenic | 35.0% |
| ! | CTTTCTCTTTGGTGGTTTAA+TGG | - | chr5_1:7701321-7701340 | None:intergenic | 35.0% |
| TTCACATTCTTTCTCTTTGG+TGG | - | chr5_1:7701329-7701348 | None:intergenic | 35.0% | |
| TTACAAAGATTAGTACCTGG+TGG | + | chr5_1:7701419-7701438 | Msa0714880:CDS | 35.0% | |
| GAAGAAACAAGTTCAAACGT+TGG | + | chr5_1:7701499-7701518 | Msa0714880:CDS | 35.0% | |
| TTCAAACGTTGGAACAAGTT+GGG | + | chr5_1:7701510-7701529 | Msa0714880:CDS | 35.0% | |
| TGAAACCCAACAACATTCAA+AGG | - | chr5_1:7701545-7701564 | None:intergenic | 35.0% | |
| TTGAATGTTGTTGGGTTTCA+AGG | + | chr5_1:7701545-7701564 | Msa0714880:CDS | 35.0% | |
| CTAAGCATTTGTTTGGAAGT+GGG | - | chr5_1:7701644-7701663 | None:intergenic | 35.0% | |
| ACTAAGCATTTGTTTGGAAG+TGG | - | chr5_1:7701645-7701664 | None:intergenic | 35.0% | |
| TGAGGACATACTGAAAACTT+TGG | + | chr5_1:7700923-7700942 | Msa0714880:CDS | 35.0% | |
| GAGGACATACTGAAAACTTT+GGG | + | chr5_1:7700924-7700943 | Msa0714880:CDS | 35.0% | |
| GGGAAATGTTGAAAGTAACA+TGG | + | chr5_1:7700944-7700963 | Msa0714880:CDS | 35.0% | |
| ! | GATGACAATGATGATGCAAA+TGG | + | chr5_1:7700971-7700990 | Msa0714880:CDS | 35.0% |
| !! | GAGATTGAGAGTGTTGTTAT+TGG | - | chr5_1:7701036-7701055 | None:intergenic | 35.0% |
| !! | AATGGTGGATTGATCAATGA+AGG | - | chr5_1:7701116-7701135 | None:intergenic | 35.0% |
| TGTTGAAGAGGATAAGACAA+TGG | - | chr5_1:7701134-7701153 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCTTCCTGAT+GGG | - | chr5_1:7701199-7701218 | None:intergenic | 35.0% |
| CAATTCTTCATTCTCCTATC+CGG | + | chr5_1:7701214-7701233 | Msa0714880:CDS | 35.0% | |
| GAGAGAGATGATATTTCGTA+TGG | + | chr5_1:7701262-7701281 | Msa0714880:CDS | 35.0% | |
| AGAGATGATATTTCGTATGG+CGG | + | chr5_1:7701265-7701284 | Msa0714880:CDS | 35.0% | |
| ! | GTTTCTGGGTCTATGTTAAT+CGG | - | chr5_1:7701299-7701318 | None:intergenic | 35.0% |
| ! | TTGGTGGTTTAATGGTTTCT+GGG | - | chr5_1:7701313-7701332 | None:intergenic | 35.0% |
| ! | TTTGGTGGTTTAATGGTTTC+TGG | - | chr5_1:7701314-7701333 | None:intergenic | 35.0% |
| ! | CTTTCTCTTTGGTGGTTTAA+TGG | - | chr5_1:7701321-7701340 | None:intergenic | 35.0% |
| TTCACATTCTTTCTCTTTGG+TGG | - | chr5_1:7701329-7701348 | None:intergenic | 35.0% | |
| TTACAAAGATTAGTACCTGG+TGG | + | chr5_1:7701419-7701438 | Msa0714880:CDS | 35.0% | |
| GAAGAAACAAGTTCAAACGT+TGG | + | chr5_1:7701499-7701518 | Msa0714880:CDS | 35.0% | |
| TTCAAACGTTGGAACAAGTT+GGG | + | chr5_1:7701510-7701529 | Msa0714880:CDS | 35.0% | |
| TGAAACCCAACAACATTCAA+AGG | - | chr5_1:7701545-7701564 | None:intergenic | 35.0% | |
| TTGAATGTTGTTGGGTTTCA+AGG | + | chr5_1:7701545-7701564 | Msa0714880:CDS | 35.0% | |
| CTAAGCATTTGTTTGGAAGT+GGG | - | chr5_1:7701644-7701663 | None:intergenic | 35.0% | |
| ACTAAGCATTTGTTTGGAAG+TGG | - | chr5_1:7701645-7701664 | None:intergenic | 35.0% | |
| TGAAGAGGATAAGACAATGG+TGG | - | chr5_1:7701131-7701150 | None:intergenic | 40.0% | |
| GATGGGATTTGAACTCTGTT+GGG | - | chr5_1:7701182-7701201 | None:intergenic | 40.0% | |
| TGATGGGATTTGAACTCTGT+TGG | - | chr5_1:7701183-7701202 | None:intergenic | 40.0% | |
| AACAGAGTTCAAATCCCATC+AGG | + | chr5_1:7701182-7701201 | Msa0714880:CDS | 40.0% | |
| !! | GAATTGTTGGTTCTTCCTGA+TGG | - | chr5_1:7701200-7701219 | None:intergenic | 40.0% |
| TGAATTCTTCTTCTCCGGAT+AGG | - | chr5_1:7701231-7701250 | None:intergenic | 40.0% | |
| TCCGGAGAAGAAGAATTCAA+TGG | + | chr5_1:7701232-7701251 | Msa0714880:CDS | 40.0% | |
| GCCATTGAATTCTTCTTCTC+CGG | - | chr5_1:7701236-7701255 | None:intergenic | 40.0% | |
| AGTACCTGGTGGAACAAAAA+TGG | + | chr5_1:7701430-7701449 | Msa0714880:CDS | 40.0% | |
| GTTCAAACGTTGGAACAAGT+TGG | + | chr5_1:7701509-7701528 | Msa0714880:CDS | 40.0% | |
| TCAAACGTTGGAACAAGTTG+GGG | + | chr5_1:7701511-7701530 | Msa0714880:CDS | 40.0% | |
| TTGTTCATCACCTTGCCAAA+TGG | + | chr5_1:7701613-7701632 | Msa0714880:CDS | 40.0% | |
| TGAAGAGGATAAGACAATGG+TGG | - | chr5_1:7701131-7701150 | None:intergenic | 40.0% | |
| GATGGGATTTGAACTCTGTT+GGG | - | chr5_1:7701182-7701201 | None:intergenic | 40.0% | |
| TGATGGGATTTGAACTCTGT+TGG | - | chr5_1:7701183-7701202 | None:intergenic | 40.0% | |
| AACAGAGTTCAAATCCCATC+AGG | + | chr5_1:7701182-7701201 | Msa0714880:CDS | 40.0% | |
| !! | GAATTGTTGGTTCTTCCTGA+TGG | - | chr5_1:7701200-7701219 | None:intergenic | 40.0% |
| TGAATTCTTCTTCTCCGGAT+AGG | - | chr5_1:7701231-7701250 | None:intergenic | 40.0% | |
| TCCGGAGAAGAAGAATTCAA+TGG | + | chr5_1:7701232-7701251 | Msa0714880:CDS | 40.0% | |
| GCCATTGAATTCTTCTTCTC+CGG | - | chr5_1:7701236-7701255 | None:intergenic | 40.0% | |
| AGTACCTGGTGGAACAAAAA+TGG | + | chr5_1:7701430-7701449 | Msa0714880:CDS | 40.0% | |
| GTTCAAACGTTGGAACAAGT+TGG | + | chr5_1:7701509-7701528 | Msa0714880:CDS | 40.0% | |
| TCAAACGTTGGAACAAGTTG+GGG | + | chr5_1:7701511-7701530 | Msa0714880:CDS | 40.0% | |
| TTGTTCATCACCTTGCCAAA+TGG | + | chr5_1:7701613-7701632 | Msa0714880:CDS | 40.0% | |
| !! | GGTGTCATTGGTTGTTGAAG+AGG | - | chr5_1:7701146-7701165 | None:intergenic | 45.0% |
| TGTCTTGCTGCTACACTTTG+TGG | - | chr5_1:7701365-7701384 | None:intergenic | 45.0% | |
| !! | GTGTCCATTTTTGTTCCACC+AGG | - | chr5_1:7701437-7701456 | None:intergenic | 45.0% |
| TGTTGTTGGGTTTCAAGGAG+TGG | + | chr5_1:7701550-7701569 | Msa0714880:CDS | 45.0% | |
| TTCATCACCTTGCCAAATGG+TGG | + | chr5_1:7701616-7701635 | Msa0714880:CDS | 45.0% | |
| TCATCACCTTGCCAAATGGT+GGG | + | chr5_1:7701617-7701636 | Msa0714880:CDS | 45.0% | |
| !! | GGTGTCATTGGTTGTTGAAG+AGG | - | chr5_1:7701146-7701165 | None:intergenic | 45.0% |
| TGTCTTGCTGCTACACTTTG+TGG | - | chr5_1:7701365-7701384 | None:intergenic | 45.0% | |
| !! | GTGTCCATTTTTGTTCCACC+AGG | - | chr5_1:7701437-7701456 | None:intergenic | 45.0% |
| TGTTGTTGGGTTTCAAGGAG+TGG | + | chr5_1:7701550-7701569 | Msa0714880:CDS | 45.0% | |
| TTCATCACCTTGCCAAATGG+TGG | + | chr5_1:7701616-7701635 | Msa0714880:CDS | 45.0% | |
| TCATCACCTTGCCAAATGGT+GGG | + | chr5_1:7701617-7701636 | Msa0714880:CDS | 45.0% | |
| !! | ACTCTGTTGGGTTGAAGCGA+CGG | - | chr5_1:7701170-7701189 | None:intergenic | 50.0% |
| !! | ACTCTGTTGGGTTGAAGCGA+CGG | - | chr5_1:7701170-7701189 | None:intergenic | 50.0% |
| TGGAAGTGGGACCCACCATT+TGG | - | chr5_1:7701631-7701650 | None:intergenic | 55.0% | |
| TGGAAGTGGGACCCACCATT+TGG | - | chr5_1:7701631-7701650 | None:intergenic | 55.0% | |
| !! | TGAAGCGACGGCGGTGTCAT+TGG | - | chr5_1:7701158-7701177 | None:intergenic | 60.0% |
| !! | CTGTTGGGTTGAAGCGACGG+CGG | - | chr5_1:7701167-7701186 | None:intergenic | 60.0% |
| GTGGGACCCACCATTTGGCA+AGG | - | chr5_1:7701626-7701645 | None:intergenic | 60.0% | |
| !! | TGAAGCGACGGCGGTGTCAT+TGG | - | chr5_1:7701158-7701177 | None:intergenic | 60.0% |
| !! | CTGTTGGGTTGAAGCGACGG+CGG | - | chr5_1:7701167-7701186 | None:intergenic | 60.0% |
| GTGGGACCCACCATTTGGCA+AGG | - | chr5_1:7701626-7701645 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7700918 | 7701667 | 7700918 | ID=Msa0714880;Name=Msa0714880 |
| chr5_1 | mRNA | 7700918 | 7701667 | 7700918 | ID=Msa0714880-mRNA-1;Parent=Msa0714880;Name=Msa0714880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|249 |
| chr5_1 | exon | 7700918 | 7701667 | 7700918 | ID=Msa0714880-mRNA-1:exon:3225;Parent=Msa0714880-mRNA-1 |
| chr5_1 | CDS | 7700918 | 7701667 | 7700918 | ID=Msa0714880-mRNA-1:cds;Parent=Msa0714880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
