Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836460 | XP_003611730.1 | 91.633 | 251 | 15 | 2 | 1 | 249 | 1 | 247 | 4.75e-137 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836460 | sp|Q9FHA7|HEC1_ARATH | 57.292 | 192 | 68 | 4 | 17 | 203 | 4 | 186 | 4.94e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836460 | G7K6N1 | 91.633 | 251 | 15 | 2 | 1 | 249 | 1 | 247 | 2.27e-137 | 395 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0836460 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714880 | Msa0836460 | 0.897743 | 1.045671e-76 | -8.615850e-47 |
| Msa0343160 | Msa0836460 | 0.804542 | 2.054583e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836460 | MtrunA17_Chr5g0402161 | 91.633 | 251 | 15 | 2 | 1 | 249 | 1 | 247 | 4.37e-141 | 395 |
| Msa0836460 | MtrunA17_Chr8g0375121 | 57.895 | 266 | 79 | 10 | 1 | 249 | 1 | 250 | 5.34e-66 | 205 |
| Msa0836460 | MtrunA17_Chr3g0134001 | 55.502 | 209 | 74 | 8 | 25 | 214 | 40 | 248 | 1.33e-58 | 187 |
| Msa0836460 | MtrunA17_Chr8g0384141 | 75.824 | 91 | 22 | 0 | 112 | 202 | 87 | 177 | 7.50e-47 | 156 |
| Msa0836460 | MtrunA17_Chr2g0330641 | 64.486 | 107 | 36 | 2 | 100 | 205 | 251 | 356 | 7.97e-32 | 120 |
| Msa0836460 | MtrunA17_Chr8g0341421 | 63.636 | 99 | 32 | 1 | 111 | 205 | 296 | 394 | 3.32e-29 | 114 |
| Msa0836460 | MtrunA17_Chr7g0243041 | 66.667 | 60 | 20 | 0 | 145 | 204 | 32 | 91 | 3.16e-23 | 92.0 |
| Msa0836460 | MtrunA17_Chr5g0435021 | 55.696 | 79 | 33 | 1 | 125 | 201 | 202 | 280 | 1.65e-20 | 88.6 |
| Msa0836460 | MtrunA17_Chr1g0207301 | 53.731 | 67 | 31 | 0 | 135 | 201 | 284 | 350 | 1.61e-17 | 80.9 |
| Msa0836460 | MtrunA17_Chr1g0152651 | 62.963 | 54 | 20 | 0 | 148 | 201 | 283 | 336 | 2.75e-17 | 80.1 |
| Msa0836460 | MtrunA17_Chr5g0393721 | 62.963 | 54 | 20 | 0 | 148 | 201 | 233 | 286 | 4.53e-17 | 79.3 |
| Msa0836460 | MtrunA17_Chr1g0207311 | 51.948 | 77 | 32 | 2 | 130 | 201 | 182 | 258 | 7.00e-17 | 78.2 |
| Msa0836460 | MtrunA17_Chr3g0134741 | 55.556 | 63 | 28 | 0 | 139 | 201 | 229 | 291 | 2.51e-16 | 77.0 |
| Msa0836460 | MtrunA17_Chr4g0074161 | 54.286 | 70 | 27 | 1 | 146 | 210 | 213 | 282 | 7.31e-15 | 73.6 |
| Msa0836460 | MtrunA17_Chr1g0190731 | 51.429 | 70 | 34 | 0 | 132 | 201 | 186 | 255 | 8.04e-15 | 72.8 |
| Msa0836460 | MtrunA17_Chr1g0179061 | 42.169 | 83 | 42 | 1 | 139 | 215 | 170 | 252 | 2.92e-13 | 67.4 |
| Msa0836460 | MtrunA17_Chr2g0311101 | 46.667 | 75 | 33 | 1 | 135 | 202 | 158 | 232 | 7.43e-13 | 67.0 |
| Msa0836460 | MtrunA17_Chr4g0014771 | 50.769 | 65 | 31 | 1 | 140 | 203 | 119 | 183 | 4.02e-12 | 63.5 |
| Msa0836460 | MtrunA17_Chr2g0323091 | 48.148 | 54 | 28 | 0 | 149 | 202 | 146 | 199 | 7.19e-11 | 60.8 |
| Msa0836460 | MtrunA17_Chr3g0095391 | 40.580 | 69 | 41 | 0 | 152 | 220 | 322 | 390 | 7.52e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836460 | AT5G67060.1 | 57.292 | 192 | 68 | 4 | 17 | 203 | 4 | 186 | 5.02e-51 | 167 |
| Msa0836460 | AT3G50330.1 | 55.046 | 218 | 67 | 7 | 14 | 222 | 4 | 199 | 5.02e-51 | 166 |
| Msa0836460 | AT5G67060.2 | 56.831 | 183 | 66 | 3 | 25 | 203 | 1 | 174 | 5.99e-48 | 158 |
| Msa0836460 | AT4G00120.1 | 67.708 | 96 | 28 | 1 | 114 | 206 | 87 | 182 | 1.09e-39 | 136 |
| Msa0836460 | AT3G21330.1 | 54.472 | 123 | 48 | 1 | 90 | 204 | 212 | 334 | 4.50e-38 | 137 |
| Msa0836460 | AT5G09750.1 | 76.667 | 90 | 21 | 0 | 112 | 201 | 92 | 181 | 2.03e-35 | 126 |
| Msa0836460 | AT5G01305.1 | 69.492 | 59 | 18 | 0 | 140 | 198 | 38 | 96 | 7.56e-22 | 89.4 |
| Msa0836460 | AT5G43175.1 | 50.725 | 69 | 34 | 0 | 133 | 201 | 126 | 194 | 8.16e-19 | 82.8 |
| Msa0836460 | AT4G33880.1 | 59.677 | 62 | 25 | 0 | 140 | 201 | 267 | 328 | 1.58e-18 | 84.0 |
| Msa0836460 | AT5G37800.1 | 56.164 | 73 | 25 | 1 | 136 | 201 | 191 | 263 | 3.62e-18 | 82.4 |
| Msa0836460 | AT1G66470.1 | 67.273 | 55 | 18 | 0 | 147 | 201 | 203 | 257 | 5.26e-18 | 81.6 |
| Msa0836460 | AT1G27740.1 | 51.471 | 68 | 33 | 0 | 134 | 201 | 162 | 229 | 5.56e-18 | 80.9 |
| Msa0836460 | AT2G14760.1 | 58.065 | 62 | 26 | 0 | 140 | 201 | 238 | 299 | 1.54e-17 | 80.9 |
| Msa0836460 | AT4G30980.1 | 40.000 | 115 | 68 | 1 | 87 | 201 | 79 | 192 | 8.84e-17 | 78.6 |
| Msa0836460 | AT2G24260.2 | 52.703 | 74 | 29 | 1 | 134 | 201 | 24 | 97 | 1.26e-16 | 77.0 |
| Msa0836460 | AT4G30980.2 | 40.000 | 115 | 68 | 1 | 87 | 201 | 127 | 240 | 1.98e-16 | 78.2 |
| Msa0836460 | AT2G24260.1 | 52.703 | 74 | 29 | 1 | 134 | 201 | 127 | 200 | 3.14e-16 | 77.4 |
| Msa0836460 | AT5G58010.1 | 54.545 | 66 | 30 | 0 | 136 | 201 | 96 | 161 | 8.53e-15 | 72.8 |
| Msa0836460 | AT2G14760.3 | 48.000 | 75 | 26 | 1 | 140 | 201 | 238 | 312 | 3.49e-14 | 71.6 |
Find 56 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTGGTTTAATGGTTTC+TGG | 0.032783 | 5_4:-9920578 | None:intergenic |
| CTTTCTCTTTGGTGGTTTAA+TGG | 0.129321 | 5_4:-9920585 | None:intergenic |
| ACAAACAATGATTTCCCTTA+TGG | 0.235794 | 5_4:+9920329 | Msa0836460:CDS |
| ATCTTCACATTCTTTCTCTT+TGG | 0.246196 | 5_4:-9920596 | None:intergenic |
| AATTATTCTTCTTTGCTTAG+AGG | 0.258079 | 5_4:+9920857 | Msa0836460:CDS |
| AAAGAATTAGTGAAAGAATA+AGG | 0.285456 | 5_4:+9920660 | Msa0836460:CDS |
| GAGATTGAGAGTGTTGTTAT+TGG | 0.293893 | 5_4:-9920300 | None:intergenic |
| TTATTGGTATTGCTATAAAA+AGG | 0.306430 | 5_4:-9920284 | None:intergenic |
| TTGGTGGTTTAATGGTTTCT+GGG | 0.314323 | 5_4:-9920577 | None:intergenic |
| TGTCTTGCTGCTACACTTTG+TGG | 0.337683 | 5_4:-9920629 | None:intergenic |
| TTCACATTCTTTCTCTTTGG+TGG | 0.352271 | 5_4:-9920593 | None:intergenic |
| TGAAGCGACGGCGGTGTCAT+TGG | 0.364263 | 5_4:-9920422 | None:intergenic |
| TTCAAACGTTGGAACAAGTT+GGG | 0.370508 | 5_4:+9920777 | Msa0836460:CDS |
| TTGAATGTTGTTGGGTTTCA+AGG | 0.375435 | 5_4:+9920812 | Msa0836460:CDS |
| GTTTCTGGGTCTATGTTAAT+CGG | 0.384832 | 5_4:-9920563 | None:intergenic |
| TGATGGGATTTGAACTCTGT+TGG | 0.387374 | 5_4:-9920447 | None:intergenic |
| GCCATTGAATTCTTCTTCTC+CGG | 0.399282 | 5_4:-9920500 | None:intergenic |
| ACTAAGCATTTGTTTGGAAG+TGG | 0.402015 | 5_4:-9920909 | None:intergenic |
| AATAGACCTTTGAATGTTGT+TGG | 0.403761 | 5_4:+9920803 | Msa0836460:CDS |
| GTTACATTTGAGTTTCCATA+AGG | 0.409196 | 5_4:-9920344 | None:intergenic |
| TGAGGACATACTGAAAACTT+TGG | 0.409321 | 5_4:+9920190 | Msa0836460:CDS |
| GATGGGATTTGAACTCTGTT+GGG | 0.418955 | 5_4:-9920446 | None:intergenic |
| GTGTCAACTAAGCATTTGTT+TGG | 0.421668 | 5_4:-9920915 | None:intergenic |
| CAATTCTTCATTCTCCTATC+CGG | 0.438986 | 5_4:+9920481 | Msa0836460:CDS |
| GAGGACATACTGAAAACTTT+GGG | 0.447841 | 5_4:+9920191 | Msa0836460:CDS |
| TTCATCACCTTGTCAAATGG+TGG | 0.454399 | 5_4:+9920883 | Msa0836460:CDS |
| ATAGACCTTTGAATGTTGTT+GGG | 0.458742 | 5_4:+9920804 | Msa0836460:CDS |
| ATAGGAGAATGAAGAATTGT+TGG | 0.471030 | 5_4:-9920477 | None:intergenic |
| TTGTTCATCACCTTGTCAAA+TGG | 0.472913 | 5_4:+9920880 | Msa0836460:CDS |
| TTACATTTGAGTTTCCATAA+GGG | 0.484501 | 5_4:-9920343 | None:intergenic |
| GTTCAAACGTTGGAACAAGT+TGG | 0.486495 | 5_4:+9920776 | Msa0836460:CDS |
| GATGACAATGATGATGCAAA+TGG | 0.498844 | 5_4:+9920238 | Msa0836460:CDS |
| AATTGTTGGTTCTTCCTGAT+GGG | 0.499420 | 5_4:-9920463 | None:intergenic |
| TGAATTCTTCTTCTCCGGAT+AGG | 0.501360 | 5_4:-9920495 | None:intergenic |
| GAATTGTTGGTTCTTCCTGA+TGG | 0.503297 | 5_4:-9920464 | None:intergenic |
| AACAGAGTTCAAATCCCATC+AGG | 0.513806 | 5_4:+9920449 | Msa0836460:CDS |
| TGTTGTTGGGTTTCAAGGAG+TGG | 0.515205 | 5_4:+9920817 | Msa0836460:CDS |
| TCTGAAAACATTCATGGATG+AGG | 0.543834 | 5_4:+9920172 | None:intergenic |
| TCATCACCTTGTCAAATGGT+GGG | 0.544804 | 5_4:+9920884 | Msa0836460:CDS |
| CTAAGCATTTGTTTGGAAGT+GGG | 0.548242 | 5_4:-9920908 | None:intergenic |
| GGTGTCATTGGTTGTTGAAG+AGG | 0.548657 | 5_4:-9920410 | None:intergenic |
| GAAGAAACAAGTTCAAACGT+TGG | 0.554879 | 5_4:+9920766 | Msa0836460:CDS |
| TGAAACCCAACAACATTCAA+AGG | 0.560330 | 5_4:-9920809 | None:intergenic |
| TCAAACGTTGGAACAAGTTG+GGG | 0.569007 | 5_4:+9920778 | Msa0836460:CDS |
| ACTCTGTTGGGTTGAAGCGA+CGG | 0.575367 | 5_4:-9920434 | None:intergenic |
| AAAGAATGTGAAGATTTCAA+AGG | 0.590303 | 5_4:+9920604 | Msa0836460:CDS |
| TGAAGAGGATAAGACAATGG+TGG | 0.592428 | 5_4:-9920395 | None:intergenic |
| TCCGGAGAAGAAGAATTCAA+TGG | 0.605617 | 5_4:+9920499 | Msa0836460:CDS |
| AGAGATGATATTTCGTATAG+CGG | 0.621555 | 5_4:+9920532 | Msa0836460:CDS |
| AATGGTGGATTGATCAATGA+AGG | 0.629442 | 5_4:-9920380 | None:intergenic |
| GGGAAATGTTGAAAGTAACA+TGG | 0.631569 | 5_4:+9920211 | Msa0836460:CDS |
| CTGTTGGGTTGAAGCGACGG+CGG | 0.671897 | 5_4:-9920431 | None:intergenic |
| ATATTACAAAGATTAGTACC+TGG | 0.683168 | 5_4:+9920683 | Msa0836460:CDS |
| TTACAAAGATTAGTACCTGG+TGG | 0.689802 | 5_4:+9920686 | Msa0836460:CDS |
| GTGGGACCCACCATTTGACA+AGG | 0.698050 | 5_4:-9920890 | None:intergenic |
| TGTTGAAGAGGATAAGACAA+TGG | 0.700529 | 5_4:-9920398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGGTATTGCTATAAAA+AGG | - | chr5_4:9920287-9920306 | None:intergenic | 20.0% |
| !! | AAAGAATTAGTGAAAGAATA+AGG | + | chr5_4:9920660-9920679 | Msa0836460:CDS | 20.0% |
| !! | TTATTGGTATTGCTATAAAA+AGG | - | chr5_4:9920287-9920306 | None:intergenic | 20.0% |
| !! | AAAGAATTAGTGAAAGAATA+AGG | + | chr5_4:9920660-9920679 | Msa0836460:CDS | 20.0% |
| ! | AAAAAGGTTCATATGAATCA+GGG | - | chr5_4:9920271-9920290 | None:intergenic | 25.0% |
| ! | TAAAAAGGTTCATATGAATC+AGG | - | chr5_4:9920272-9920291 | None:intergenic | 25.0% |
| !! | TTACATTTGAGTTTCCATAA+GGG | - | chr5_4:9920346-9920365 | None:intergenic | 25.0% |
| ! | AAAGAATGTGAAGATTTCAA+AGG | + | chr5_4:9920604-9920623 | Msa0836460:CDS | 25.0% |
| ! | ATATTACAAAGATTAGTACC+TGG | + | chr5_4:9920683-9920702 | Msa0836460:CDS | 25.0% |
| ! | AATTATTCTTCTTTGCTTAG+AGG | + | chr5_4:9920857-9920876 | Msa0836460:CDS | 25.0% |
| ! | AAAAAGGTTCATATGAATCA+GGG | - | chr5_4:9920271-9920290 | None:intergenic | 25.0% |
| ! | TAAAAAGGTTCATATGAATC+AGG | - | chr5_4:9920272-9920291 | None:intergenic | 25.0% |
| !! | TTACATTTGAGTTTCCATAA+GGG | - | chr5_4:9920346-9920365 | None:intergenic | 25.0% |
| ! | AAAGAATGTGAAGATTTCAA+AGG | + | chr5_4:9920604-9920623 | Msa0836460:CDS | 25.0% |
| ! | ATATTACAAAGATTAGTACC+TGG | + | chr5_4:9920683-9920702 | Msa0836460:CDS | 25.0% |
| ! | AATTATTCTTCTTTGCTTAG+AGG | + | chr5_4:9920857-9920876 | Msa0836460:CDS | 25.0% |
| ACAAACAATGATTTCCCTTA+TGG | + | chr5_4:9920329-9920348 | Msa0836460:CDS | 30.0% | |
| ! | GTTACATTTGAGTTTCCATA+AGG | - | chr5_4:9920347-9920366 | None:intergenic | 30.0% |
| ATAGGAGAATGAAGAATTGT+TGG | - | chr5_4:9920480-9920499 | None:intergenic | 30.0% | |
| AGAGATGATATTTCGTATAG+CGG | + | chr5_4:9920532-9920551 | Msa0836460:CDS | 30.0% | |
| ATCTTCACATTCTTTCTCTT+TGG | - | chr5_4:9920599-9920618 | None:intergenic | 30.0% | |
| AATAGACCTTTGAATGTTGT+TGG | + | chr5_4:9920803-9920822 | Msa0836460:CDS | 30.0% | |
| ATAGACCTTTGAATGTTGTT+GGG | + | chr5_4:9920804-9920823 | Msa0836460:CDS | 30.0% | |
| ACAAACAATGATTTCCCTTA+TGG | + | chr5_4:9920329-9920348 | Msa0836460:CDS | 30.0% | |
| ! | GTTACATTTGAGTTTCCATA+AGG | - | chr5_4:9920347-9920366 | None:intergenic | 30.0% |
| ATAGGAGAATGAAGAATTGT+TGG | - | chr5_4:9920480-9920499 | None:intergenic | 30.0% | |
| AGAGATGATATTTCGTATAG+CGG | + | chr5_4:9920532-9920551 | Msa0836460:CDS | 30.0% | |
| ATCTTCACATTCTTTCTCTT+TGG | - | chr5_4:9920599-9920618 | None:intergenic | 30.0% | |
| AATAGACCTTTGAATGTTGT+TGG | + | chr5_4:9920803-9920822 | Msa0836460:CDS | 30.0% | |
| ATAGACCTTTGAATGTTGTT+GGG | + | chr5_4:9920804-9920823 | Msa0836460:CDS | 30.0% | |
| TGAGGACATACTGAAAACTT+TGG | + | chr5_4:9920190-9920209 | Msa0836460:CDS | 35.0% | |
| GAGGACATACTGAAAACTTT+GGG | + | chr5_4:9920191-9920210 | Msa0836460:CDS | 35.0% | |
| GGGAAATGTTGAAAGTAACA+TGG | + | chr5_4:9920211-9920230 | Msa0836460:CDS | 35.0% | |
| ! | GATGACAATGATGATGCAAA+TGG | + | chr5_4:9920238-9920257 | Msa0836460:CDS | 35.0% |
| !! | GAGATTGAGAGTGTTGTTAT+TGG | - | chr5_4:9920303-9920322 | None:intergenic | 35.0% |
| !! | AATGGTGGATTGATCAATGA+AGG | - | chr5_4:9920383-9920402 | None:intergenic | 35.0% |
| TGTTGAAGAGGATAAGACAA+TGG | - | chr5_4:9920401-9920420 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCTTCCTGAT+GGG | - | chr5_4:9920466-9920485 | None:intergenic | 35.0% |
| CAATTCTTCATTCTCCTATC+CGG | + | chr5_4:9920481-9920500 | Msa0836460:CDS | 35.0% | |
| ! | GTTTCTGGGTCTATGTTAAT+CGG | - | chr5_4:9920566-9920585 | None:intergenic | 35.0% |
| ! | TTGGTGGTTTAATGGTTTCT+GGG | - | chr5_4:9920580-9920599 | None:intergenic | 35.0% |
| ! | TTTGGTGGTTTAATGGTTTC+TGG | - | chr5_4:9920581-9920600 | None:intergenic | 35.0% |
| ! | CTTTCTCTTTGGTGGTTTAA+TGG | - | chr5_4:9920588-9920607 | None:intergenic | 35.0% |
| TTCACATTCTTTCTCTTTGG+TGG | - | chr5_4:9920596-9920615 | None:intergenic | 35.0% | |
| TTACAAAGATTAGTACCTGG+TGG | + | chr5_4:9920686-9920705 | Msa0836460:CDS | 35.0% | |
| GAAGAAACAAGTTCAAACGT+TGG | + | chr5_4:9920766-9920785 | Msa0836460:CDS | 35.0% | |
| TTCAAACGTTGGAACAAGTT+GGG | + | chr5_4:9920777-9920796 | Msa0836460:CDS | 35.0% | |
| TGAAACCCAACAACATTCAA+AGG | - | chr5_4:9920812-9920831 | None:intergenic | 35.0% | |
| TTGAATGTTGTTGGGTTTCA+AGG | + | chr5_4:9920812-9920831 | Msa0836460:CDS | 35.0% | |
| TTGTTCATCACCTTGTCAAA+TGG | + | chr5_4:9920880-9920899 | Msa0836460:CDS | 35.0% | |
| CTAAGCATTTGTTTGGAAGT+GGG | - | chr5_4:9920911-9920930 | None:intergenic | 35.0% | |
| ACTAAGCATTTGTTTGGAAG+TGG | - | chr5_4:9920912-9920931 | None:intergenic | 35.0% | |
| TGAGGACATACTGAAAACTT+TGG | + | chr5_4:9920190-9920209 | Msa0836460:CDS | 35.0% | |
| GAGGACATACTGAAAACTTT+GGG | + | chr5_4:9920191-9920210 | Msa0836460:CDS | 35.0% | |
| GGGAAATGTTGAAAGTAACA+TGG | + | chr5_4:9920211-9920230 | Msa0836460:CDS | 35.0% | |
| ! | GATGACAATGATGATGCAAA+TGG | + | chr5_4:9920238-9920257 | Msa0836460:CDS | 35.0% |
| !! | GAGATTGAGAGTGTTGTTAT+TGG | - | chr5_4:9920303-9920322 | None:intergenic | 35.0% |
| !! | AATGGTGGATTGATCAATGA+AGG | - | chr5_4:9920383-9920402 | None:intergenic | 35.0% |
| TGTTGAAGAGGATAAGACAA+TGG | - | chr5_4:9920401-9920420 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCTTCCTGAT+GGG | - | chr5_4:9920466-9920485 | None:intergenic | 35.0% |
| CAATTCTTCATTCTCCTATC+CGG | + | chr5_4:9920481-9920500 | Msa0836460:CDS | 35.0% | |
| ! | GTTTCTGGGTCTATGTTAAT+CGG | - | chr5_4:9920566-9920585 | None:intergenic | 35.0% |
| ! | TTGGTGGTTTAATGGTTTCT+GGG | - | chr5_4:9920580-9920599 | None:intergenic | 35.0% |
| ! | TTTGGTGGTTTAATGGTTTC+TGG | - | chr5_4:9920581-9920600 | None:intergenic | 35.0% |
| ! | CTTTCTCTTTGGTGGTTTAA+TGG | - | chr5_4:9920588-9920607 | None:intergenic | 35.0% |
| TTCACATTCTTTCTCTTTGG+TGG | - | chr5_4:9920596-9920615 | None:intergenic | 35.0% | |
| TTACAAAGATTAGTACCTGG+TGG | + | chr5_4:9920686-9920705 | Msa0836460:CDS | 35.0% | |
| GAAGAAACAAGTTCAAACGT+TGG | + | chr5_4:9920766-9920785 | Msa0836460:CDS | 35.0% | |
| TTCAAACGTTGGAACAAGTT+GGG | + | chr5_4:9920777-9920796 | Msa0836460:CDS | 35.0% | |
| TGAAACCCAACAACATTCAA+AGG | - | chr5_4:9920812-9920831 | None:intergenic | 35.0% | |
| TTGAATGTTGTTGGGTTTCA+AGG | + | chr5_4:9920812-9920831 | Msa0836460:CDS | 35.0% | |
| TTGTTCATCACCTTGTCAAA+TGG | + | chr5_4:9920880-9920899 | Msa0836460:CDS | 35.0% | |
| CTAAGCATTTGTTTGGAAGT+GGG | - | chr5_4:9920911-9920930 | None:intergenic | 35.0% | |
| ACTAAGCATTTGTTTGGAAG+TGG | - | chr5_4:9920912-9920931 | None:intergenic | 35.0% | |
| TGAAGAGGATAAGACAATGG+TGG | - | chr5_4:9920398-9920417 | None:intergenic | 40.0% | |
| GATGGGATTTGAACTCTGTT+GGG | - | chr5_4:9920449-9920468 | None:intergenic | 40.0% | |
| TGATGGGATTTGAACTCTGT+TGG | - | chr5_4:9920450-9920469 | None:intergenic | 40.0% | |
| AACAGAGTTCAAATCCCATC+AGG | + | chr5_4:9920449-9920468 | Msa0836460:CDS | 40.0% | |
| !! | GAATTGTTGGTTCTTCCTGA+TGG | - | chr5_4:9920467-9920486 | None:intergenic | 40.0% |
| TGAATTCTTCTTCTCCGGAT+AGG | - | chr5_4:9920498-9920517 | None:intergenic | 40.0% | |
| TCCGGAGAAGAAGAATTCAA+TGG | + | chr5_4:9920499-9920518 | Msa0836460:CDS | 40.0% | |
| GCCATTGAATTCTTCTTCTC+CGG | - | chr5_4:9920503-9920522 | None:intergenic | 40.0% | |
| AGTACCTGGTGGAACAAAAA+TGG | + | chr5_4:9920697-9920716 | Msa0836460:CDS | 40.0% | |
| GTTCAAACGTTGGAACAAGT+TGG | + | chr5_4:9920776-9920795 | Msa0836460:CDS | 40.0% | |
| TCAAACGTTGGAACAAGTTG+GGG | + | chr5_4:9920778-9920797 | Msa0836460:CDS | 40.0% | |
| TTCATCACCTTGTCAAATGG+TGG | + | chr5_4:9920883-9920902 | Msa0836460:CDS | 40.0% | |
| TCATCACCTTGTCAAATGGT+GGG | + | chr5_4:9920884-9920903 | Msa0836460:CDS | 40.0% | |
| TGAAGAGGATAAGACAATGG+TGG | - | chr5_4:9920398-9920417 | None:intergenic | 40.0% | |
| GATGGGATTTGAACTCTGTT+GGG | - | chr5_4:9920449-9920468 | None:intergenic | 40.0% | |
| TGATGGGATTTGAACTCTGT+TGG | - | chr5_4:9920450-9920469 | None:intergenic | 40.0% | |
| AACAGAGTTCAAATCCCATC+AGG | + | chr5_4:9920449-9920468 | Msa0836460:CDS | 40.0% | |
| !! | GAATTGTTGGTTCTTCCTGA+TGG | - | chr5_4:9920467-9920486 | None:intergenic | 40.0% |
| TGAATTCTTCTTCTCCGGAT+AGG | - | chr5_4:9920498-9920517 | None:intergenic | 40.0% | |
| TCCGGAGAAGAAGAATTCAA+TGG | + | chr5_4:9920499-9920518 | Msa0836460:CDS | 40.0% | |
| GCCATTGAATTCTTCTTCTC+CGG | - | chr5_4:9920503-9920522 | None:intergenic | 40.0% | |
| AGTACCTGGTGGAACAAAAA+TGG | + | chr5_4:9920697-9920716 | Msa0836460:CDS | 40.0% | |
| GTTCAAACGTTGGAACAAGT+TGG | + | chr5_4:9920776-9920795 | Msa0836460:CDS | 40.0% | |
| TCAAACGTTGGAACAAGTTG+GGG | + | chr5_4:9920778-9920797 | Msa0836460:CDS | 40.0% | |
| TTCATCACCTTGTCAAATGG+TGG | + | chr5_4:9920883-9920902 | Msa0836460:CDS | 40.0% | |
| TCATCACCTTGTCAAATGGT+GGG | + | chr5_4:9920884-9920903 | Msa0836460:CDS | 40.0% | |
| !! | GGTGTCATTGGTTGTTGAAG+AGG | - | chr5_4:9920413-9920432 | None:intergenic | 45.0% |
| TGTCTTGCTGCTACACTTTG+TGG | - | chr5_4:9920632-9920651 | None:intergenic | 45.0% | |
| !! | GTGTCCATTTTTGTTCCACC+AGG | - | chr5_4:9920704-9920723 | None:intergenic | 45.0% |
| TGTTGTTGGGTTTCAAGGAG+TGG | + | chr5_4:9920817-9920836 | Msa0836460:CDS | 45.0% | |
| !! | GGTGTCATTGGTTGTTGAAG+AGG | - | chr5_4:9920413-9920432 | None:intergenic | 45.0% |
| TGTCTTGCTGCTACACTTTG+TGG | - | chr5_4:9920632-9920651 | None:intergenic | 45.0% | |
| !! | GTGTCCATTTTTGTTCCACC+AGG | - | chr5_4:9920704-9920723 | None:intergenic | 45.0% |
| TGTTGTTGGGTTTCAAGGAG+TGG | + | chr5_4:9920817-9920836 | Msa0836460:CDS | 45.0% | |
| !! | ACTCTGTTGGGTTGAAGCGA+CGG | - | chr5_4:9920437-9920456 | None:intergenic | 50.0% |
| !! | ACTCTGTTGGGTTGAAGCGA+CGG | - | chr5_4:9920437-9920456 | None:intergenic | 50.0% |
| GTGGGACCCACCATTTGACA+AGG | - | chr5_4:9920893-9920912 | None:intergenic | 55.0% | |
| GTGGGACCCACCATTTGACA+AGG | - | chr5_4:9920893-9920912 | None:intergenic | 55.0% | |
| !! | TGAAGCGACGGCGGTGTCAT+TGG | - | chr5_4:9920425-9920444 | None:intergenic | 60.0% |
| !! | CTGTTGGGTTGAAGCGACGG+CGG | - | chr5_4:9920434-9920453 | None:intergenic | 60.0% |
| !! | TGAAGCGACGGCGGTGTCAT+TGG | - | chr5_4:9920425-9920444 | None:intergenic | 60.0% |
| !! | CTGTTGGGTTGAAGCGACGG+CGG | - | chr5_4:9920434-9920453 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9920185 | 9920934 | 9920185 | ID=Msa0836460;Name=Msa0836460 |
| chr5_4 | mRNA | 9920185 | 9920934 | 9920185 | ID=Msa0836460-mRNA-1;Parent=Msa0836460;Name=Msa0836460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|249 |
| chr5_4 | exon | 9920185 | 9920934 | 9920185 | ID=Msa0836460-mRNA-1:exon:4400;Parent=Msa0836460-mRNA-1 |
| chr5_4 | CDS | 9920185 | 9920934 | 9920185 | ID=Msa0836460-mRNA-1:cds;Parent=Msa0836460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
