Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343760 | XP_003609805.1 | 98.793 | 497 | 6 | 0 | 1 | 497 | 1 | 497 | 0.0 | 1014 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343760 | sp|Q9SEE5|GALK1_ARATH | 77.062 | 497 | 113 | 1 | 1 | 497 | 1 | 496 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343760 | G7JNZ5 | 98.793 | 497 | 6 | 0 | 1 | 497 | 1 | 497 | 0.0 | 1014 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0343760 | Msa1218910 | 0.997661 | 1.098025e-246 | -8.615850e-47 |
| Msa0343760 | Msa1370500 | 0.808102 | 3.653076e-50 | -8.615850e-47 |
| Msa0343760 | Msa1384010 | 0.808840 | 2.541899e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343760 | MtrunA17_Chr4g0068661 | 98.793 | 497 | 6 | 0 | 1 | 497 | 1 | 497 | 0.0 | 1014 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343760 | AT3G06580.1 | 77.062 | 497 | 113 | 1 | 1 | 497 | 1 | 496 | 0.0 | 782 |
Find 131 sgRNAs with CRISPR-Local
Find 397 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATAGCGTTGAATAATTT+TGG | 0.089798 | 3_1:-2205115 | None:intergenic |
| CTCTTCCACAATTGCTATTA+TGG | 0.141725 | 3_1:+2206675 | Msa0343760:CDS |
| GATCACAAACCTTCAAATTA+AGG | 0.197994 | 3_1:-2211202 | None:intergenic |
| TCCAAATTCGTTGAAAATTT+CGG | 0.246083 | 3_1:+2205329 | Msa0343760:CDS |
| CAGTTCTGCAAACCCATTCT+TGG | 0.249899 | 3_1:-2208317 | None:intergenic |
| TCTCGTGACAATGGTGCTTT+TGG | 0.257971 | 3_1:+2211104 | Msa0343760:CDS |
| GTAGTACCAAACACAATTTC+TGG | 0.269168 | 3_1:+2211472 | Msa0343760:three_prime_UTR |
| AATGGATAATTATAGGATTT+AGG | 0.271161 | 3_1:-2205067 | None:intergenic |
| CTGCCACAAATTATAATAAC+AGG | 0.297713 | 3_1:+2208440 | Msa0343760:CDS |
| TCGATTTCTTCAGCTGTATA+TGG | 0.299037 | 3_1:-2209312 | None:intergenic |
| TGCACATCCGTCGCACGAAT+TGG | 0.320314 | 3_1:-2208352 | None:intergenic |
| TTATCCTGCTGATCCTCTTC+AGG | 0.327923 | 3_1:+2205642 | Msa0343760:CDS |
| GGCTCTAGATTATCGTAAAT+CGG | 0.338581 | 3_1:-2205248 | None:intergenic |
| TATTGATTATGAAGGATATT+CGG | 0.356865 | 3_1:+2205510 | Msa0343760:CDS |
| CTCACCCACAAATAAAATAA+TGG | 0.364731 | 3_1:-2206194 | None:intergenic |
| GGACTTGACGTTCTTGTTGA+TGG | 0.367172 | 3_1:+2206453 | Msa0343760:CDS |
| ACTGAGAAACCCGACGATAA+TGG | 0.369156 | 3_1:+2205202 | Msa0343760:exon |
| GACTGTGAATGGATAATTAT+AGG | 0.369810 | 3_1:-2205074 | None:intergenic |
| AAGATACGATTATCGCTATT+AGG | 0.371993 | 3_1:+2205554 | Msa0343760:CDS |
| TGTGATTGTGAACGACATAT+TGG | 0.375888 | 3_1:+2207400 | Msa0343760:CDS |
| ACAATTCATCCTTAATTTGA+AGG | 0.382576 | 3_1:+2211193 | Msa0343760:CDS |
| CGACATATTGGGACACAATC+TGG | 0.386672 | 3_1:+2207412 | Msa0343760:CDS |
| AACCCTGTTATTATAATTTG+TGG | 0.392769 | 3_1:-2208443 | None:intergenic |
| CTGAGACTCTGCCAAAGAAT+TGG | 0.400595 | 3_1:-2208404 | None:intergenic |
| GAATATTAATGCATCTTACT+TGG | 0.408856 | 3_1:+2209368 | Msa0343760:CDS |
| ACGTTGTATCATCAAATCTA+AGG | 0.409282 | 3_1:+2209648 | Msa0343760:CDS |
| GGGTGGTTGTGCTGTTGCTT+TGG | 0.410900 | 3_1:+2211151 | Msa0343760:CDS |
| AATCCACCAGAAATTGTGTT+TGG | 0.420639 | 3_1:-2211478 | None:intergenic |
| GAAGAAATCGAAGAAGTTAC+CGG | 0.424087 | 3_1:+2209324 | Msa0343760:CDS |
| TAGGAAGAGTGAATTTGATT+GGG | 0.426262 | 3_1:+2205482 | Msa0343760:intron |
| ATCTCTGTTATGGCCAAGAA+TGG | 0.430328 | 3_1:+2208304 | Msa0343760:CDS |
| GGGTTATGTGTATCATTTGC+TGG | 0.433557 | 3_1:+2209059 | Msa0343760:CDS |
| CAATTATTCGCTCGTTCACC+TGG | 0.436107 | 3_1:+2205362 | Msa0343760:CDS |
| TCAAATTAAGGATGAATTGT+GGG | 0.440093 | 3_1:-2211190 | None:intergenic |
| TATAATGACTCTCGTTCATA+AGG | 0.441852 | 3_1:-2210820 | None:intergenic |
| AGGAACATTACTACCAATCT+AGG | 0.442473 | 3_1:+2211303 | Msa0343760:intron |
| CAAGAGGGTATATGCTTTCA+AGG | 0.443777 | 3_1:+2209625 | Msa0343760:CDS |
| GGCAGAACCACTCGATGGCT+TGG | 0.444907 | 3_1:-2211378 | None:intergenic |
| GTAGGAAGAGTGAATTTGAT+TGG | 0.445775 | 3_1:+2205481 | Msa0343760:intron |
| GGGGAACATATTGATTATGA+AGG | 0.446447 | 3_1:+2205502 | Msa0343760:CDS |
| GACTTGACGTTCTTGTTGAT+GGG | 0.447782 | 3_1:+2206454 | Msa0343760:CDS |
| TAAAATAAGCTAAATCCAAA+CGG | 0.447847 | 3_1:-2211674 | None:intergenic |
| GGAGCAAGGCTTACTGGAGC+TGG | 0.447955 | 3_1:+2211125 | Msa0343760:CDS |
| GCACATCCGTCGCACGAATT+GGG | 0.451229 | 3_1:-2208351 | None:intergenic |
| TGTATGTATCGGTGATGGTT+TGG | 0.453194 | 3_1:-2205028 | None:intergenic |
| TCGACAGGCAATCTCTGTTA+TGG | 0.454995 | 3_1:+2208294 | Msa0343760:intron |
| GTCATTAAGAAGAACGATCT+TGG | 0.455049 | 3_1:+2211338 | Msa0343760:CDS |
| CACCCTTGTCTATCCTAGAT+TGG | 0.456265 | 3_1:-2211316 | None:intergenic |
| CATAAATATCAACAGAGAAG+TGG | 0.459428 | 3_1:-2211430 | None:intergenic |
| TTGCAGTTATATTTCGCAAC+GGG | 0.460630 | 3_1:+2211609 | Msa0343760:three_prime_UTR |
| ACTATGTAGATTTACCCGTT+TGG | 0.462955 | 3_1:+2211659 | Msa0343760:three_prime_UTR |
| TCTGGTGGATTAATAAGAAA+AGG | 0.464199 | 3_1:+2211490 | Msa0343760:three_prime_UTR |
| TGGACTTGAAGAATCACAAA+TGG | 0.465900 | 3_1:+2206169 | Msa0343760:CDS |
| ATCAGCAGGATAAGTACAAA+TGG | 0.469245 | 3_1:-2205632 | None:intergenic |
| AAAATAAGCTAAATCCAAAC+GGG | 0.472216 | 3_1:-2211673 | None:intergenic |
| GGAATCGAAATCAATGTAAA+CGG | 0.473468 | 3_1:-2205007 | None:intergenic |
| GCTCTAGATTATCGTAAATC+GGG | 0.473952 | 3_1:-2205247 | None:intergenic |
| TTTGTAAGTTCTTCCAACTC+TGG | 0.474401 | 3_1:-2211077 | None:intergenic |
| ACAATCTGGTGGGATGGATC+AGG | 0.475250 | 3_1:+2207426 | Msa0343760:CDS |
| AAGGCTTACTGGAGCTGGAT+GGG | 0.475755 | 3_1:+2211130 | Msa0343760:CDS |
| GGACTTGAAGAATCACAAAT+GGG | 0.484154 | 3_1:+2206170 | Msa0343760:CDS |
| GATGAACCTCCGCCGTAGAC+AGG | 0.487429 | 3_1:-2205269 | None:intergenic |
| TCGTGCGTCGCCATTATCGT+CGG | 0.489228 | 3_1:-2205212 | None:intergenic |
| ACAAGAACGTCAAGTCCAAC+AGG | 0.490755 | 3_1:-2206447 | None:intergenic |
| GTGATTGTGAACGACATATT+GGG | 0.493659 | 3_1:+2207401 | Msa0343760:CDS |
| AGCAGCCATAATAGCAATTG+TGG | 0.498462 | 3_1:-2206680 | None:intergenic |
| CAAGGCTTACTGGAGCTGGA+TGG | 0.498736 | 3_1:+2211129 | Msa0343760:CDS |
| GCAGTAATTTATACGAATGC+AGG | 0.500493 | 3_1:+2210846 | Msa0343760:CDS |
| CTTGAAAGCATATACCCTCT+TGG | 0.502513 | 3_1:-2209624 | None:intergenic |
| CTAGAGCCTGTCTACGGCGG+AGG | 0.502982 | 3_1:+2205263 | Msa0343760:CDS |
| ACGGATGTGCAACTGCCTGC+TGG | 0.505754 | 3_1:+2208364 | Msa0343760:CDS |
| CGTGCGTCGCCATTATCGTC+GGG | 0.505931 | 3_1:-2205211 | None:intergenic |
| TATGACTATGCGAAATTGAA+GGG | 0.511896 | 3_1:+2206408 | Msa0343760:CDS |
| AAAGCAATACAAGTTGCATC+AGG | 0.513624 | 3_1:+2209407 | Msa0343760:CDS |
| TTATGACTATGCGAAATTGA+AGG | 0.514727 | 3_1:+2206407 | Msa0343760:CDS |
| AGGCTTACTGGAGCTGGATG+GGG | 0.516644 | 3_1:+2211131 | Msa0343760:CDS |
| CTTACTGGAGCTGGATGGGG+TGG | 0.526544 | 3_1:+2211134 | Msa0343760:CDS |
| TCTCTGTTATGGCCAAGAAT+GGG | 0.526647 | 3_1:+2208305 | Msa0343760:CDS |
| TGAACCTGAAGAGGATCAGC+AGG | 0.527979 | 3_1:-2205646 | None:intergenic |
| ATTACCTTCACAGCGAGTAC+AGG | 0.528647 | 3_1:-2209101 | None:intergenic |
| TTCAAATTAAGGATGAATTG+TGG | 0.532594 | 3_1:-2211191 | None:intergenic |
| TATAGGATTTAGGATAGTGA+TGG | 0.533092 | 3_1:-2205057 | None:intergenic |
| ATCACAAAAGTCCCACCAGC+AGG | 0.536256 | 3_1:-2208379 | None:intergenic |
| GATGTGCAACTGCCTGCTGG+TGG | 0.536562 | 3_1:+2208367 | Msa0343760:CDS |
| ATAAATATCAACAGAGAAGT+GGG | 0.537861 | 3_1:-2211429 | None:intergenic |
| AATATTCTAAAACTTGAAGA+TGG | 0.541503 | 3_1:-2211399 | None:intergenic |
| TGAAATCAGCTGTCCAGAGT+TGG | 0.548752 | 3_1:+2211064 | Msa0343760:intron |
| GGTGAACGAGCGAATAATTG+AGG | 0.549520 | 3_1:-2205359 | None:intergenic |
| GATAATCTAGAGCCTGTCTA+CGG | 0.549946 | 3_1:+2205257 | Msa0343760:CDS |
| AGGAAGAGTGAATTTGATTG+GGG | 0.551055 | 3_1:+2205483 | Msa0343760:intron |
| TGATCCTGTACTCGCTGTGA+AGG | 0.552414 | 3_1:+2209097 | Msa0343760:CDS |
| TAGGATTTCTATAGGTACAA+AGG | 0.561405 | 3_1:+2206381 | Msa0343760:intron |
| TGGGACACAATCTGGTGGGA+TGG | 0.564547 | 3_1:+2207420 | Msa0343760:CDS |
| GTTGATGGGACCGTGCCGAC+AGG | 0.568767 | 3_1:+2206468 | Msa0343760:CDS |
| TACACATAACCCTTCAACAT+CGG | 0.571247 | 3_1:-2209048 | None:intergenic |
| ATTGTGCTCGCTATAAAGCT+AGG | 0.575941 | 3_1:+2208984 | Msa0343760:CDS |
| TTCTTTGGCAGAGTCTCAGA+AGG | 0.576699 | 3_1:+2208408 | Msa0343760:CDS |
| GTGGATGTTGGCGAACCTGT+TGG | 0.578252 | 3_1:+2206432 | Msa0343760:CDS |
| ATGTGCAACTGCCTGCTGGT+GGG | 0.581184 | 3_1:+2208368 | Msa0343760:CDS |
| AAGAGAATATGAACCTGAAG+AGG | 0.581252 | 3_1:-2205655 | None:intergenic |
| GAGGAGACGCTAAAGAAACT+TGG | 0.583914 | 3_1:+2210794 | Msa0343760:CDS |
| CTATGCGAAATTGAAGGGAG+TGG | 0.585579 | 3_1:+2206413 | Msa0343760:CDS |
| CAACACTATCCGATGTTGAA+GGG | 0.588728 | 3_1:+2209039 | Msa0343760:CDS |
| CGTGTATTCAGAAGCCAAGA+GGG | 0.590972 | 3_1:+2209610 | Msa0343760:CDS |
| ATCAACAGAGAAGTGGGTGA+AGG | 0.594604 | 3_1:-2211423 | None:intergenic |
| ACAACACTATCCGATGTTGA+AGG | 0.595651 | 3_1:+2209038 | Msa0343760:CDS |
| CTACCAATCTAGGATAGACA+AGG | 0.596476 | 3_1:+2211313 | Msa0343760:CDS |
| AAGAAATCGAAGAAGTTACC+GGG | 0.596482 | 3_1:+2209325 | Msa0343760:CDS |
| AATCAACTCACCTGTCGGCA+CGG | 0.596636 | 3_1:-2206478 | None:intergenic |
| GCTAGGAATGGCACCAACTG+AGG | 0.596765 | 3_1:+2209001 | Msa0343760:CDS |
| AGATTATCGTAAATCGGGAT+CGG | 0.599602 | 3_1:-2205242 | None:intergenic |
| ACAAAGATTTCTCGTGACAA+TGG | 0.603732 | 3_1:+2211095 | Msa0343760:CDS |
| TTTCAACCCAATTCGTGCGA+CGG | 0.604535 | 3_1:+2208345 | Msa0343760:CDS |
| TTTGCTTCCAAGCCATCGAG+TGG | 0.606040 | 3_1:+2211371 | Msa0343760:CDS |
| AAATTGAAGGGAGTGGATGT+TGG | 0.611094 | 3_1:+2206420 | Msa0343760:CDS |
| ATTGCAGTTATATTTCGCAA+CGG | 0.612781 | 3_1:+2211608 | Msa0343760:three_prime_UTR |
| ATAATTGTATGTATCGGTGA+TGG | 0.617242 | 3_1:-2205033 | None:intergenic |
| CATATTGGGACACAATCTGG+TGG | 0.624239 | 3_1:+2207415 | Msa0343760:CDS |
| GTACCAAACACAATTTCTGG+TGG | 0.625617 | 3_1:+2211475 | Msa0343760:three_prime_UTR |
| GTATCTTGACGAATAGCCAT+AGG | 0.626094 | 3_1:-2205538 | None:intergenic |
| AATCTAGAGCCTGTCTACGG+CGG | 0.638719 | 3_1:+2205260 | Msa0343760:CDS |
| GCTCGCTATAAAGCTAGGAA+TGG | 0.642563 | 3_1:+2208989 | Msa0343760:CDS |
| AAGATGGCAGAACCACTCGA+TGG | 0.646901 | 3_1:-2211383 | None:intergenic |
| ATATTGGGACACAATCTGGT+GGG | 0.648656 | 3_1:+2207416 | Msa0343760:CDS |
| GATGGAATAATTGTATGTAT+CGG | 0.672025 | 3_1:-2205039 | None:intergenic |
| TGCCACAAATTATAATAACA+GGG | 0.672691 | 3_1:+2208441 | Msa0343760:CDS |
| ACGTGTATTCAGAAGCCAAG+AGG | 0.678724 | 3_1:+2209609 | Msa0343760:CDS |
| GACTTGAAGAATCACAAATG+GGG | 0.686870 | 3_1:+2206171 | Msa0343760:CDS |
| TACCAATCTAGGATAGACAA+GGG | 0.714091 | 3_1:+2211314 | Msa0343760:CDS |
| TTCGGGACTATCAAGCTCTG+CGG | 0.726175 | 3_1:+2206642 | Msa0343760:CDS |
| AGAAATCGAAGAAGTTACCG+GGG | 0.742768 | 3_1:+2209326 | Msa0343760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTTGTTTAGTTAAA+GGG | + | chr3_1:2206558-2206577 | Msa0343760:intron | 10.0% |
| !! | ATATATAAAATAGTAATGAA+AGG | - | chr3_1:2208929-2208948 | None:intergenic | 10.0% |
| !! | AAAATTTAAATAGTAAAAGA+AGG | - | chr3_1:2209172-2209191 | None:intergenic | 10.0% |
| !!! | TACAATATTTTAATTGTTTT+TGG | + | chr3_1:2210877-2210896 | Msa0343760:intron | 10.0% |
| !!! | ATATAAAATTTTAGTGTTTA+AGG | - | chr3_1:2211247-2211266 | None:intergenic | 10.0% |
| !!! | TCTTGTTTATTTTTTAAAAT+GGG | - | chr3_1:2211519-2211538 | None:intergenic | 10.0% |
| !!! | TTCTTGTTTATTTTTTAAAA+TGG | - | chr3_1:2211520-2211539 | None:intergenic | 10.0% |
| !! | TTTAAAAAATAAACAAGAAA+AGG | + | chr3_1:2211521-2211540 | Msa0343760:three_prime_UTR | 10.0% |
| !! | CATTATTATTATTACTATTG+TGG | - | chr3_1:2205801-2205820 | None:intergenic | 15.0% |
| !!! | ACTATAATTTTTTAAGCTTT+TGG | + | chr3_1:2205916-2205935 | Msa0343760:intron | 15.0% |
| !! | CTTTAACTAAACAAATATAA+AGG | - | chr3_1:2206559-2206578 | None:intergenic | 15.0% |
| !! | CTTTATATTTGTTTAGTTAA+AGG | + | chr3_1:2206557-2206576 | Msa0343760:intron | 15.0% |
| !! | TCATGATAATAAATAAATCA+TGG | - | chr3_1:2207191-2207210 | None:intergenic | 15.0% |
| !!! | AAGATTTGAAATTTTTATGA+AGG | - | chr3_1:2209242-2209261 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTCATTTTGTAAT+TGG | + | chr3_1:2210729-2210748 | Msa0343760:intron | 15.0% |
| !!! | CTTGTTTATTTTTTAAAATG+GGG | - | chr3_1:2211518-2211537 | None:intergenic | 15.0% |
| !! | AATGGATAATTATAGGATTT+AGG | - | chr3_1:2205070-2205089 | None:intergenic | 20.0% |
| !!! | TTTATAGCGTTGAATAATTT+TGG | - | chr3_1:2205118-2205137 | None:intergenic | 20.0% |
| !!! | TATTGATTATGAAGGATATT+CGG | + | chr3_1:2205510-2205529 | Msa0343760:CDS | 20.0% |
| !!! | AATAATAATGATGATGATGA+TGG | + | chr3_1:2205811-2205830 | Msa0343760:intron | 20.0% |
| !! | TTGTATAGAAACAATACATT+TGG | + | chr3_1:2206029-2206048 | Msa0343760:intron | 20.0% |
| !!! | ATTCAGTATTAATTGATGAT+AGG | + | chr3_1:2206362-2206381 | Msa0343760:intron | 20.0% |
| !!! | ATATTTATGTTTTACAGGTT+CGG | + | chr3_1:2206624-2206643 | Msa0343760:intron | 20.0% |
| !!! | GTTACAAATAGTTTGAAATA+GGG | - | chr3_1:2207134-2207153 | None:intergenic | 20.0% |
| !!! | TGTTACAAATAGTTTGAAAT+AGG | - | chr3_1:2207135-2207154 | None:intergenic | 20.0% |
| !! | TGATAATAAATAAATCATGG+AGG | - | chr3_1:2207188-2207207 | None:intergenic | 20.0% |
| !! | TTGTATTTCATCATTTAGTA+TGG | + | chr3_1:2207661-2207680 | Msa0343760:intron | 20.0% |
| !! | GAAAATAATATTGTACTAAC+AGG | - | chr3_1:2208589-2208608 | None:intergenic | 20.0% |
| !! | ATGAGTTAAATTGAATTGAT+CGG | - | chr3_1:2208711-2208730 | None:intergenic | 20.0% |
| !! | AAATGGCTAAAAATTTATTG+TGG | + | chr3_1:2209486-2209505 | Msa0343760:intron | 20.0% |
| !!! | CTTTTCTACTTTTCATTAAT+AGG | + | chr3_1:2210355-2210374 | Msa0343760:intron | 20.0% |
| !!! | AATATTCTAAAACTTGAAGA+TGG | - | chr3_1:2211402-2211421 | None:intergenic | 20.0% |
| !! | TAAAATAAGCTAAATCCAAA+CGG | - | chr3_1:2211677-2211696 | None:intergenic | 20.0% |
| ! | GATGGAATAATTGTATGTAT+CGG | - | chr3_1:2205042-2205061 | None:intergenic | 25.0% |
| !!! | CGTTGAATAATTTTGGAAAT+CGG | - | chr3_1:2205111-2205130 | None:intergenic | 25.0% |
| ! | TCCAAATTCGTTGAAAATTT+CGG | + | chr3_1:2205329-2205348 | Msa0343760:CDS | 25.0% |
| !!! | TTCATTATGCAATTGATTTG+TGG | + | chr3_1:2205411-2205430 | Msa0343760:intron | 25.0% |
| !!! | ATTGTTGTTTTATGATGTGT+AGG | + | chr3_1:2205463-2205482 | Msa0343760:intron | 25.0% |
| ! | TGATACAATCACGTAAAATT+GGG | - | chr3_1:2205980-2205999 | None:intergenic | 25.0% |
| ! | TTGATACAATCACGTAAAAT+TGG | - | chr3_1:2205981-2206000 | None:intergenic | 25.0% |
| !! | ATTGATGATAGGATTTCTAT+AGG | + | chr3_1:2206373-2206392 | Msa0343760:intron | 25.0% |
| ! | CAAGTAAATTTCAATACACT+TGG | - | chr3_1:2206525-2206544 | None:intergenic | 25.0% |
| ! | CAAGTGTATTGAAATTTACT+TGG | + | chr3_1:2206523-2206542 | Msa0343760:intron | 25.0% |
| !! | GGACAATATTTATGTTTTAC+AGG | + | chr3_1:2206619-2206638 | Msa0343760:intron | 25.0% |
| !! | TATTTATGTTTTACAGGTTC+GGG | + | chr3_1:2206625-2206644 | Msa0343760:intron | 25.0% |
| ! | ATATAATGTATCCATGCATT+TGG | - | chr3_1:2206821-2206840 | None:intergenic | 25.0% |
| ! | TACAAAAACTACAGTAATGT+TGG | - | chr3_1:2206961-2206980 | None:intergenic | 25.0% |
| ! | ACTATTTGTAACAGTTGAAA+TGG | + | chr3_1:2207142-2207161 | Msa0343760:intron | 25.0% |
| !!! | TTTAGCTTGTTCAAGTAAAT+AGG | - | chr3_1:2207227-2207246 | None:intergenic | 25.0% |
| ! | ATATTCTACTATCTCTTACT+TGG | + | chr3_1:2207697-2207716 | Msa0343760:intron | 25.0% |
| !! | TGACTATCATTTTAAACTTG+AGG | - | chr3_1:2207822-2207841 | None:intergenic | 25.0% |
| ! | TTATGAATACTCTTGTTACA+TGG | + | chr3_1:2208168-2208187 | Msa0343760:intron | 25.0% |
| !!! | TATCTTTTGTTGTTCTTCTT+GGG | + | chr3_1:2208223-2208242 | Msa0343760:intron | 25.0% |
| ! | TGCCACAAATTATAATAACA+GGG | + | chr3_1:2208441-2208460 | Msa0343760:CDS | 25.0% |
| ! | AACCCTGTTATTATAATTTG+TGG | - | chr3_1:2208446-2208465 | None:intergenic | 25.0% |
| !! | AGGTAAAGAAATGTCTTATT+AGG | - | chr3_1:2208766-2208785 | None:intergenic | 25.0% |
| ! | GAATATTAATGCATCTTACT+TGG | + | chr3_1:2209368-2209387 | Msa0343760:CDS | 25.0% |
| ! | TACATGAAATCTTCACTAAT+GGG | - | chr3_1:2209448-2209467 | None:intergenic | 25.0% |
| ! | ATACATGAAATCTTCACTAA+TGG | - | chr3_1:2209449-2209468 | None:intergenic | 25.0% |
| ! | ATTAGTGAAGATTTCATGTA+TGG | + | chr3_1:2209448-2209467 | Msa0343760:intron | 25.0% |
| !!! | TTTATAGCTTCTAGAACAAT+TGG | + | chr3_1:2209761-2209780 | Msa0343760:intron | 25.0% |
| !! | TTTGATAATTCGCATGTAAA+AGG | + | chr3_1:2209785-2209804 | Msa0343760:intron | 25.0% |
| !! | AGATGGTTTAAATTTGAAAC+AGG | + | chr3_1:2209859-2209878 | Msa0343760:intron | 25.0% |
| !! | CTTACAAGCTAATTTTGTTA+GGG | - | chr3_1:2209905-2209924 | None:intergenic | 25.0% |
| ! | ATAGTAGTAAAGCCAAAAAT+TGG | - | chr3_1:2210166-2210185 | None:intergenic | 25.0% |
| !! | GTTTTGCATCTCTATAAAAT+TGG | + | chr3_1:2210218-2210237 | Msa0343760:intron | 25.0% |
| ! | AAAATTGGCTACAATAAACA+AGG | + | chr3_1:2210233-2210252 | Msa0343760:intron | 25.0% |
| ! | ATAAACAAGGAGCAAAATTT+AGG | + | chr3_1:2210246-2210265 | Msa0343760:intron | 25.0% |
| ! | TTTCTCGTTTCAAACAAAAT+TGG | - | chr3_1:2210307-2210326 | None:intergenic | 25.0% |
| !!! | TTCTACTTTTCATTAATAGG+TGG | + | chr3_1:2210358-2210377 | Msa0343760:intron | 25.0% |
| ! | AGACAGACTAAATGAATATT+GGG | - | chr3_1:2210484-2210503 | None:intergenic | 25.0% |
| ! | AAATGATTCTTAGCTTATGA+TGG | + | chr3_1:2210543-2210562 | Msa0343760:intron | 25.0% |
| ! | AATGATTCTTAGCTTATGAT+GGG | + | chr3_1:2210544-2210563 | Msa0343760:intron | 25.0% |
| ! | AAATGAGTCTTAGCTTATAT+TGG | + | chr3_1:2210656-2210675 | Msa0343760:intron | 25.0% |
| ! | AATGAGTCTTAGCTTATATT+GGG | + | chr3_1:2210657-2210676 | Msa0343760:intron | 25.0% |
| ! | TCAAATTAAGGATGAATTGT+GGG | - | chr3_1:2211193-2211212 | None:intergenic | 25.0% |
| ! | TTCAAATTAAGGATGAATTG+TGG | - | chr3_1:2211194-2211213 | None:intergenic | 25.0% |
| !! | ACAATTCATCCTTAATTTGA+AGG | + | chr3_1:2211193-2211212 | Msa0343760:CDS | 25.0% |
| ! | ATAAATATCAACAGAGAAGT+GGG | - | chr3_1:2211432-2211451 | None:intergenic | 25.0% |
| ! | ACAACTTCACAATAAAAACA+CGG | - | chr3_1:2211549-2211568 | None:intergenic | 25.0% |
| ! | AAAATAAGCTAAATCCAAAC+GGG | - | chr3_1:2211676-2211695 | None:intergenic | 25.0% |
| GGAATCGAAATCAATGTAAA+CGG | - | chr3_1:2205010-2205029 | None:intergenic | 30.0% | |
| ! | ATAATTGTATGTATCGGTGA+TGG | - | chr3_1:2205036-2205055 | None:intergenic | 30.0% |
| ! | TATAGGATTTAGGATAGTGA+TGG | - | chr3_1:2205060-2205079 | None:intergenic | 30.0% |
| GACTGTGAATGGATAATTAT+AGG | - | chr3_1:2205077-2205096 | None:intergenic | 30.0% | |
| AAAAATTGTAGGACTGTGAA+TGG | - | chr3_1:2205088-2205107 | None:intergenic | 30.0% | |
| TTGGAAATCGGAAAAATTGT+AGG | - | chr3_1:2205099-2205118 | None:intergenic | 30.0% | |
| ! | ACCGAAATTTTCAACGAATT+TGG | - | chr3_1:2205333-2205352 | None:intergenic | 30.0% |
| TAGGAAGAGTGAATTTGATT+GGG | + | chr3_1:2205482-2205501 | Msa0343760:intron | 30.0% | |
| AAGATACGATTATCGCTATT+AGG | + | chr3_1:2205554-2205573 | Msa0343760:CDS | 30.0% | |
| TCAATTCTACTTATCACTTC+CGG | - | chr3_1:2205881-2205900 | None:intergenic | 30.0% | |
| CTCACCCACAAATAAAATAA+TGG | - | chr3_1:2206197-2206216 | None:intergenic | 30.0% | |
| CTTAGTCAGTGAGAAAAAAA+CGG | + | chr3_1:2206321-2206340 | Msa0343760:intron | 30.0% | |
| TAGGATTTCTATAGGTACAA+AGG | + | chr3_1:2206381-2206400 | Msa0343760:intron | 30.0% | |
| TTATGACTATGCGAAATTGA+AGG | + | chr3_1:2206407-2206426 | Msa0343760:CDS | 30.0% | |
| TATGACTATGCGAAATTGAA+GGG | + | chr3_1:2206408-2206427 | Msa0343760:CDS | 30.0% | |
| ! | GAAATTTACTTGGTGAGTAT+TGG | + | chr3_1:2206533-2206552 | Msa0343760:intron | 30.0% |
| !! | TTATTGTTTTGCCAAATGCA+TGG | + | chr3_1:2206807-2206826 | Msa0343760:intron | 30.0% |
| ! | ACTACAGTAATGTTGGTTAT+TGG | - | chr3_1:2206954-2206973 | None:intergenic | 30.0% |
| ! | CTGTAGTTTTTGTATAGTTC+TGG | + | chr3_1:2206967-2206986 | Msa0343760:intron | 30.0% |
| AACTACACAACTTGGAATTT+CGG | - | chr3_1:2207505-2207524 | None:intergenic | 30.0% | |
| GAAGAAAAAACTACACAACT+TGG | - | chr3_1:2207513-2207532 | None:intergenic | 30.0% | |
| TACAGAGTTTCTATCTATGT+CGG | + | chr3_1:2207793-2207812 | Msa0343760:intron | 30.0% | |
| !!! | TGCAGAAGTCTTTTGATTTA+GGG | + | chr3_1:2207848-2207867 | Msa0343760:intron | 30.0% |
| ACAAACACTTTGTAAGTGTT+GGG | + | chr3_1:2207909-2207928 | Msa0343760:intron | 30.0% | |
| ATATCATTTGATATGCCCTA+CGG | + | chr3_1:2207946-2207965 | Msa0343760:intron | 30.0% | |
| !!! | CCTTATTTTCATAAGTTGCT+CGG | + | chr3_1:2207978-2207997 | Msa0343760:intron | 30.0% |
| !!! | CTGTATAAGCTGTTTTTATG+AGG | - | chr3_1:2208008-2208027 | None:intergenic | 30.0% |
| TTATTCAGTAGCAACAAAGA+GGG | - | chr3_1:2208056-2208075 | None:intergenic | 30.0% | |
| !!! | CTATCTTTTGTTGTTCTTCT+TGG | + | chr3_1:2208222-2208241 | Msa0343760:intron | 30.0% |
| ! | TTTTGTGATAGCCAATTCTT+TGG | + | chr3_1:2208393-2208412 | Msa0343760:CDS | 30.0% |
| CTGCCACAAATTATAATAAC+AGG | + | chr3_1:2208440-2208459 | Msa0343760:CDS | 30.0% | |
| ATACTCCCTAAATACTATTC+TGG | + | chr3_1:2208532-2208551 | Msa0343760:intron | 30.0% | |
| CTGTTCCAGAATAGTATTTA+GGG | - | chr3_1:2208540-2208559 | None:intergenic | 30.0% | |
| TCTGTTCCAGAATAGTATTT+AGG | - | chr3_1:2208541-2208560 | None:intergenic | 30.0% | |
| ! | TATTTTCCTTCCTTGTGTTT+TGG | + | chr3_1:2208602-2208621 | Msa0343760:intron | 30.0% |
| ! | TTTGGTAATTAACAGGTCAT+GGG | - | chr3_1:2208653-2208672 | None:intergenic | 30.0% |
| !! | TTTTGGTAATTAACAGGTCA+TGG | - | chr3_1:2208654-2208673 | None:intergenic | 30.0% |
| ! | GCTTTGTTCAATACAGAAAT+AGG | - | chr3_1:2208786-2208805 | None:intergenic | 30.0% |
| !! | CACAGAGTTAATTTTAAGAG+TGG | - | chr3_1:2209143-2209162 | None:intergenic | 30.0% |
| ! | TATTTCTGTTACAACTGATG+TGG | + | chr3_1:2209202-2209221 | Msa0343760:intron | 30.0% |
| TTCAAATATTCCTATAGCGA+AGG | - | chr3_1:2209285-2209304 | None:intergenic | 30.0% | |
| ACGTTGTATCATCAAATCTA+AGG | + | chr3_1:2209648-2209667 | Msa0343760:CDS | 30.0% | |
| ! | TCTGTAACCAGAATTTTCTA+GGG | - | chr3_1:2209842-2209861 | None:intergenic | 30.0% |
| ! | ATCTGTAACCAGAATTTTCT+AGG | - | chr3_1:2209843-2209862 | None:intergenic | 30.0% |
| ! | TAGAAAATTCTGGTTACAGA+TGG | + | chr3_1:2209842-2209861 | Msa0343760:intron | 30.0% |
| ! | TGGTTTAAATTTGAAACAGG+CGG | + | chr3_1:2209862-2209881 | Msa0343760:intron | 30.0% |
| ! | CCTTACAAGCTAATTTTGTT+AGG | - | chr3_1:2209906-2209925 | None:intergenic | 30.0% |
| !! | CCTAACAAAATTAGCTTGTA+AGG | + | chr3_1:2209903-2209922 | Msa0343760:intron | 30.0% |
| !! | AGATAGGGTTAGATTTGTTT+TGG | + | chr3_1:2210053-2210072 | Msa0343760:intron | 30.0% |
| GCGTCTTGTAATATATAGAA+AGG | + | chr3_1:2210186-2210205 | Msa0343760:intron | 30.0% | |
| GAAGAAACTAAAACCAAAAG+TGG | + | chr3_1:2210281-2210300 | Msa0343760:intron | 30.0% | |
| TTATAGCTCATATATGTGCT+TGG | + | chr3_1:2210332-2210351 | Msa0343760:intron | 30.0% | |
| CAGACAGACTAAATGAATAT+TGG | - | chr3_1:2210485-2210504 | None:intergenic | 30.0% | |
| CAATATTCATTTAGTCTGTC+TGG | + | chr3_1:2210483-2210502 | Msa0343760:intron | 30.0% | |
| TAGTCTGTCTGGTATATAAA+TGG | + | chr3_1:2210494-2210513 | Msa0343760:intron | 30.0% | |
| AGTCTGTCTGGTATATAAAT+GGG | + | chr3_1:2210495-2210514 | Msa0343760:intron | 30.0% | |
| ATGATTCTTAGCTTATGATG+GGG | + | chr3_1:2210545-2210564 | Msa0343760:intron | 30.0% | |
| CAGACAGACTAAATGAATAT+TGG | - | chr3_1:2210485-2210504 | None:intergenic | 30.0% | |
| CAATATTCATTTAGTCTGTC+TGG | + | chr3_1:2210483-2210502 | Msa0343760:intron | 30.0% | |
| AGTCTGTCTGGTATATAAAT+TGG | + | chr3_1:2210495-2210514 | Msa0343760:intron | 30.0% | |
| TCTGGTATATAAATTGGATG+AGG | + | chr3_1:2210614-2210633 | Msa0343760:intron | 30.0% | |
| TATAATGACTCTCGTTCATA+AGG | - | chr3_1:2210823-2210842 | None:intergenic | 30.0% | |
| ATTGTAAAGAGAATCCTTCT+GGG | - | chr3_1:2210936-2210955 | None:intergenic | 30.0% | |
| TATTGTAAAGAGAATCCTTC+TGG | - | chr3_1:2210937-2210956 | None:intergenic | 30.0% | |
| AGGATTCTCTTTACAATACA+TGG | + | chr3_1:2210939-2210958 | Msa0343760:intron | 30.0% | |
| GATCACAAACCTTCAAATTA+AGG | - | chr3_1:2211205-2211224 | None:intergenic | 30.0% | |
| GATTAATTCTACATCATTGC+AGG | + | chr3_1:2211283-2211302 | Msa0343760:intron | 30.0% | |
| CATAAATATCAACAGAGAAG+TGG | - | chr3_1:2211433-2211452 | None:intergenic | 30.0% | |
| !! | TCTGGTGGATTAATAAGAAA+AGG | + | chr3_1:2211490-2211509 | Msa0343760:three_prime_UTR | 30.0% |
| !!! | TGTGAAGTTGTTTTTCATGT+TGG | + | chr3_1:2211558-2211577 | Msa0343760:three_prime_UTR | 30.0% |
| !!! | GCAATGCTATTTTTCGTTTT+TGG | - | chr3_1:2211593-2211612 | None:intergenic | 30.0% |
| ATTGCAGTTATATTTCGCAA+CGG | + | chr3_1:2211608-2211627 | Msa0343760:three_prime_UTR | 30.0% | |
| AGATTATCGTAAATCGGGAT+CGG | - | chr3_1:2205245-2205264 | None:intergenic | 35.0% | |
| ! | GCTCTAGATTATCGTAAATC+GGG | - | chr3_1:2205250-2205269 | None:intergenic | 35.0% |
| !! | GGCTCTAGATTATCGTAAAT+CGG | - | chr3_1:2205251-2205270 | None:intergenic | 35.0% |
| GTAGGAAGAGTGAATTTGAT+TGG | + | chr3_1:2205481-2205500 | Msa0343760:intron | 35.0% | |
| AGGAAGAGTGAATTTGATTG+GGG | + | chr3_1:2205483-2205502 | Msa0343760:intron | 35.0% | |
| ! | GGGGAACATATTGATTATGA+AGG | + | chr3_1:2205502-2205521 | Msa0343760:CDS | 35.0% |
| ! | AGGATATTCGGTTTTACCTA+TGG | + | chr3_1:2205522-2205541 | Msa0343760:CDS | 35.0% |
| ATCAGCAGGATAAGTACAAA+TGG | - | chr3_1:2205635-2205654 | None:intergenic | 35.0% | |
| AAGAGAATATGAACCTGAAG+AGG | - | chr3_1:2205658-2205677 | None:intergenic | 35.0% | |
| ! | TGGGTTGAACAATAAAAGCA+AGG | - | chr3_1:2205961-2205980 | None:intergenic | 35.0% |
| TGGACTTGAAGAATCACAAA+TGG | + | chr3_1:2206169-2206188 | Msa0343760:CDS | 35.0% | |
| GGACTTGAAGAATCACAAAT+GGG | + | chr3_1:2206170-2206189 | Msa0343760:CDS | 35.0% | |
| GACTTGAAGAATCACAAATG+GGG | + | chr3_1:2206171-2206190 | Msa0343760:CDS | 35.0% | |
| !! | TGGGGCCATTATTTTATTTG+TGG | + | chr3_1:2206189-2206208 | Msa0343760:CDS | 35.0% |
| !! | GGGGCCATTATTTTATTTGT+GGG | + | chr3_1:2206190-2206209 | Msa0343760:CDS | 35.0% |
| GTGAAATGCCAAATGATATG+CGG | + | chr3_1:2206263-2206282 | Msa0343760:intron | 35.0% | |
| CATATACACCGCATATCATT+TGG | - | chr3_1:2206274-2206293 | None:intergenic | 35.0% | |
| CAAATGATATGCGGTGTATA+TGG | + | chr3_1:2206272-2206291 | Msa0343760:intron | 35.0% | |
| AAACAAATCAACTCACCTGT+CGG | - | chr3_1:2206486-2206505 | None:intergenic | 35.0% | |
| ! | CTCTTCCACAATTGCTATTA+TGG | + | chr3_1:2206675-2206694 | Msa0343760:CDS | 35.0% |
| ! | TTTTGATGTGAACTTCCCAA+AGG | + | chr3_1:2206702-2206721 | Msa0343760:CDS | 35.0% |
| ! | AATAGTTTGAAATAGGGACC+AGG | - | chr3_1:2207128-2207147 | None:intergenic | 35.0% |
| CAAGCTAAAGTTCTATAGTG+TGG | + | chr3_1:2207238-2207257 | Msa0343760:intron | 35.0% | |
| CTAAAGTTCTATAGTGTGGT+AGG | + | chr3_1:2207242-2207261 | Msa0343760:intron | 35.0% | |
| TGTGATTGTGAACGACATAT+TGG | + | chr3_1:2207400-2207419 | Msa0343760:CDS | 35.0% | |
| GTGATTGTGAACGACATATT+GGG | + | chr3_1:2207401-2207420 | Msa0343760:CDS | 35.0% | |
| CTTTACAGCTTCCTGATAAT+TGG | + | chr3_1:2207554-2207573 | Msa0343760:intron | 35.0% | |
| !!! | CTGCAGAAGTCTTTTGATTT+AGG | + | chr3_1:2207847-2207866 | Msa0343760:intron | 35.0% |
| GACAAACACTTTGTAAGTGT+TGG | + | chr3_1:2207908-2207927 | Msa0343760:intron | 35.0% | |
| ATAAGGTGAAAATCACCGTA+GGG | - | chr3_1:2207964-2207983 | None:intergenic | 35.0% | |
| AATAAGGTGAAAATCACCGT+AGG | - | chr3_1:2207965-2207984 | None:intergenic | 35.0% | |
| CCGAGCAACTTATGAAAATA+AGG | - | chr3_1:2207981-2208000 | None:intergenic | 35.0% | |
| CTTATTCAGTAGCAACAAAG+AGG | - | chr3_1:2208057-2208076 | None:intergenic | 35.0% | |
| ! | ACAATGCACTGATGGTATAA+GGG | - | chr3_1:2208109-2208128 | None:intergenic | 35.0% |
| AAAATACTTACGATACGACC+TGG | - | chr3_1:2208150-2208169 | None:intergenic | 35.0% | |
| !!! | TCCTTCTTATTTTACTCGAC+AGG | + | chr3_1:2208279-2208298 | Msa0343760:intron | 35.0% |
| GTACTAACAGGCTAAAAACT+AGG | - | chr3_1:2208577-2208596 | None:intergenic | 35.0% | |
| !!! | GAGTGGTTTTGGTAATTAAC+AGG | - | chr3_1:2208660-2208679 | None:intergenic | 35.0% |
| !! | AGTTACTTAATGTGGACTAG+TGG | - | chr3_1:2208684-2208703 | None:intergenic | 35.0% |
| TCGGTCAAAGTTACTTAATG+TGG | - | chr3_1:2208692-2208711 | None:intergenic | 35.0% | |
| !! | AACTAGCTTTCAATGTTTGC+AGG | - | chr3_1:2208878-2208897 | None:intergenic | 35.0% |
| !! | TGAAAGCTAGTTTGCTTAGA+TGG | + | chr3_1:2208886-2208905 | Msa0343760:intron | 35.0% |
| ! | TGAAAGGATTAGCAAGTTTC+CGG | - | chr3_1:2208913-2208932 | None:intergenic | 35.0% |
| !!! | ACTTTTGAAATTGCCTCAGT+TGG | - | chr3_1:2209017-2209036 | None:intergenic | 35.0% |
| TACACATAACCCTTCAACAT+CGG | - | chr3_1:2209051-2209070 | None:intergenic | 35.0% | |
| TAAAAACGTTCCTTCGCTAT+AGG | + | chr3_1:2209272-2209291 | Msa0343760:intron | 35.0% | |
| TCGATTTCTTCAGCTGTATA+TGG | - | chr3_1:2209315-2209334 | None:intergenic | 35.0% | |
| GAAGAAATCGAAGAAGTTAC+CGG | + | chr3_1:2209324-2209343 | Msa0343760:CDS | 35.0% | |
| AAGAAATCGAAGAAGTTACC+GGG | + | chr3_1:2209325-2209344 | Msa0343760:CDS | 35.0% | |
| AAAGCAATACAAGTTGCATC+AGG | + | chr3_1:2209407-2209426 | Msa0343760:CDS | 35.0% | |
| ! | TTTTAGCCATTTCCTAACTG+TGG | - | chr3_1:2209478-2209497 | None:intergenic | 35.0% |
| !! | AACCAATGGTAATGGTATGT+TGG | - | chr3_1:2209531-2209550 | None:intergenic | 35.0% |
| ACATTAGCTGCTAAAACCAA+TGG | - | chr3_1:2209545-2209564 | None:intergenic | 35.0% | |
| ! | CAAATCTAAGGTATGTCTGT+TGG | + | chr3_1:2209660-2209679 | Msa0343760:intron | 35.0% |
| GTTGTAACCCTAGAAAATTC+TGG | + | chr3_1:2209832-2209851 | Msa0343760:intron | 35.0% | |
| GATGACTCCAAACCTTATTA+AGG | + | chr3_1:2209927-2209946 | Msa0343760:intron | 35.0% | |
| ACTCCAAACCTTATTAAGGA+AGG | + | chr3_1:2209931-2209950 | Msa0343760:intron | 35.0% | |
| AATGTGGTCCTTCCTTAATA+AGG | - | chr3_1:2209942-2209961 | None:intergenic | 35.0% | |
| TTATTAAGGAAGGACCACAT+TGG | + | chr3_1:2209941-2209960 | Msa0343760:intron | 35.0% | |
| CATATCTCTTCTAGTCAATG+CGG | + | chr3_1:2209965-2209984 | Msa0343760:intron | 35.0% | |
| ATATCTCTTCTAGTCAATGC+GGG | + | chr3_1:2209966-2209985 | Msa0343760:intron | 35.0% | |
| TGCCTTGCGATATATAGATA+GGG | + | chr3_1:2210038-2210057 | Msa0343760:intron | 35.0% | |
| AACCCTATCTATATATCGCA+AGG | - | chr3_1:2210043-2210062 | None:intergenic | 35.0% | |
| GATCACTCCTAACCTTATAA+AGG | + | chr3_1:2210098-2210117 | Msa0343760:intron | 35.0% | |
| ACTCCTAACCTTATAAAGGA+TGG | + | chr3_1:2210102-2210121 | Msa0343760:intron | 35.0% | |
| TATGTGGTCCATCCTTTATA+AGG | - | chr3_1:2210113-2210132 | None:intergenic | 35.0% | |
| CACATATCTCTAGTCAATGT+GGG | + | chr3_1:2210127-2210146 | Msa0343760:intron | 35.0% | |
| ! | TCCCTAGTCAAACCAATTTT+TGG | + | chr3_1:2210151-2210170 | Msa0343760:intron | 35.0% |
| !! | GCCAAAAATTGGTTTGACTA+GGG | - | chr3_1:2210155-2210174 | None:intergenic | 35.0% |
| !! | AGCCAAAAATTGGTTTGACT+AGG | - | chr3_1:2210156-2210175 | None:intergenic | 35.0% |
| !! | CAAACAAAATTGGCCACTTT+TGG | - | chr3_1:2210297-2210316 | None:intergenic | 35.0% |
| ! | CAGATGTGAAGCATTTCAAA+AGG | - | chr3_1:2210405-2210424 | None:intergenic | 35.0% |
| TAATAACCACAAGCTAGATC+AGG | - | chr3_1:2210443-2210462 | None:intergenic | 35.0% | |
| TCTGGTATATAAATGGGATG+AGG | + | chr3_1:2210501-2210520 | Msa0343760:intron | 35.0% | |
| ATTGGGAATGAAAGAACTAG+TGG | + | chr3_1:2210674-2210693 | Msa0343760:intron | 35.0% | |
| GCAGTAATTTATACGAATGC+AGG | + | chr3_1:2210846-2210865 | Msa0343760:CDS | 35.0% | |
| TTGTAAAGAGAATCCTTCTG+GGG | - | chr3_1:2210935-2210954 | None:intergenic | 35.0% | |
| TTTGTAAGTTCTTCCAACTC+TGG | - | chr3_1:2211080-2211099 | None:intergenic | 35.0% | |
| ACAAAGATTTCTCGTGACAA+TGG | + | chr3_1:2211095-2211114 | Msa0343760:CDS | 35.0% | |
| AGGAACATTACTACCAATCT+AGG | + | chr3_1:2211303-2211322 | Msa0343760:intron | 35.0% | |
| ! | TACCAATCTAGGATAGACAA+GGG | + | chr3_1:2211314-2211333 | Msa0343760:CDS | 35.0% |
| GTCATTAAGAAGAACGATCT+TGG | + | chr3_1:2211338-2211357 | Msa0343760:CDS | 35.0% | |
| GTAGTACCAAACACAATTTC+TGG | + | chr3_1:2211472-2211491 | Msa0343760:three_prime_UTR | 35.0% | |
| AATCCACCAGAAATTGTGTT+TGG | - | chr3_1:2211481-2211500 | None:intergenic | 35.0% | |
| TTGCAGTTATATTTCGCAAC+GGG | + | chr3_1:2211609-2211628 | Msa0343760:three_prime_UTR | 35.0% | |
| ACTATGTAGATTTACCCGTT+TGG | + | chr3_1:2211659-2211678 | Msa0343760:three_prime_UTR | 35.0% | |
| ! | TGTATGTATCGGTGATGGTT+TGG | - | chr3_1:2205031-2205050 | None:intergenic | 40.0% |
| ! | GATAATCTAGAGCCTGTCTA+CGG | + | chr3_1:2205257-2205276 | Msa0343760:CDS | 40.0% |
| ATCGAAGATGATTTCGAACC+AGG | - | chr3_1:2205383-2205402 | None:intergenic | 40.0% | |
| GTATCTTGACGAATAGCCAT+AGG | - | chr3_1:2205541-2205560 | None:intergenic | 40.0% | |
| TAGAACGTTTAGCGTGTGTT+TGG | - | chr3_1:2206078-2206097 | None:intergenic | 40.0% | |
| AACACACGCTAAACGTTCTA+AGG | + | chr3_1:2206078-2206097 | Msa0343760:intron | 40.0% | |
| !! | GTGTTTTTGTGTGTGTGTGT+AGG | + | chr3_1:2206143-2206162 | Msa0343760:intron | 40.0% |
| TTGTGTGTGTGTGTAGGAAT+TGG | + | chr3_1:2206149-2206168 | Msa0343760:intron | 40.0% | |
| TGATATGCGGTGTATATGGA+TGG | + | chr3_1:2206276-2206295 | Msa0343760:intron | 40.0% | |
| GATATGCGGTGTATATGGAT+GGG | + | chr3_1:2206277-2206296 | Msa0343760:intron | 40.0% | |
| AAATTGAAGGGAGTGGATGT+TGG | + | chr3_1:2206420-2206439 | Msa0343760:CDS | 40.0% | |
| GACTTGACGTTCTTGTTGAT+GGG | + | chr3_1:2206454-2206473 | Msa0343760:CDS | 40.0% | |
| GTTAAAGGGACTCATGTCTT+TGG | + | chr3_1:2206572-2206591 | Msa0343760:intron | 40.0% | |
| !! | GACTCATGTCTTTGGTTTGT+TGG | + | chr3_1:2206580-2206599 | Msa0343760:intron | 40.0% |
| !! | TCATGTCTTTGGTTTGTTGG+CGG | + | chr3_1:2206583-2206602 | Msa0343760:intron | 40.0% |
| AGCAGCCATAATAGCAATTG+TGG | - | chr3_1:2206683-2206702 | None:intergenic | 40.0% | |
| ! | CTGACATGATAGTGTACAAC+TGG | + | chr3_1:2207071-2207090 | Msa0343760:intron | 40.0% |
| ATATTGGGACACAATCTGGT+GGG | + | chr3_1:2207416-2207435 | Msa0343760:CDS | 40.0% | |
| ! | GCTGTAAAGCTTCTAAGGAA+CGG | - | chr3_1:2207543-2207562 | None:intergenic | 40.0% |
| AGGAAGCTGTAAAGCTTCTA+AGG | - | chr3_1:2207548-2207567 | None:intergenic | 40.0% | |
| !! | TCCTGATAATTGGCTCTGAT+TGG | + | chr3_1:2207564-2207583 | Msa0343760:intron | 40.0% |
| ACCAATCAGAGCCAATTATC+AGG | - | chr3_1:2207568-2207587 | None:intergenic | 40.0% | |
| !! | TGGCTCTGATTGGTTAATGA+TGG | + | chr3_1:2207574-2207593 | Msa0343760:intron | 40.0% |
| AGCATCTTATGTGACCTATG+CGG | + | chr3_1:2207619-2207638 | Msa0343760:intron | 40.0% | |
| AGAGTTTCTATCTATGTCGG+TGG | + | chr3_1:2207796-2207815 | Msa0343760:intron | 40.0% | |
| ! | AATGCACTGATGGTATAAGG+GGG | - | chr3_1:2208107-2208126 | None:intergenic | 40.0% |
| ! | CAATGCACTGATGGTATAAG+GGG | - | chr3_1:2208108-2208127 | None:intergenic | 40.0% |
| ! | CACAATGCACTGATGGTATA+AGG | - | chr3_1:2208110-2208129 | None:intergenic | 40.0% |
| TGTAATGCACAATGCACTGA+TGG | - | chr3_1:2208117-2208136 | None:intergenic | 40.0% | |
| AGACCAGGTAAAATGTCAGA+AGG | - | chr3_1:2208250-2208269 | None:intergenic | 40.0% | |
| GAAGGACAAAATGTAAGACC+AGG | - | chr3_1:2208265-2208284 | None:intergenic | 40.0% | |
| GCCTGTCGAGTAAAATAAGA+AGG | - | chr3_1:2208283-2208302 | None:intergenic | 40.0% | |
| ATCTCTGTTATGGCCAAGAA+TGG | + | chr3_1:2208304-2208323 | Msa0343760:CDS | 40.0% | |
| TCTCTGTTATGGCCAAGAAT+GGG | + | chr3_1:2208305-2208324 | Msa0343760:CDS | 40.0% | |
| ATTGTGCCAAAACACAAGGA+AGG | - | chr3_1:2208611-2208630 | None:intergenic | 40.0% | |
| TTGCATTGTGCCAAAACACA+AGG | - | chr3_1:2208615-2208634 | None:intergenic | 40.0% | |
| ACAACACTATCCGATGTTGA+AGG | + | chr3_1:2209038-2209057 | Msa0343760:CDS | 40.0% | |
| CAACACTATCCGATGTTGAA+GGG | + | chr3_1:2209039-2209058 | Msa0343760:CDS | 40.0% | |
| GGGTTATGTGTATCATTTGC+TGG | + | chr3_1:2209059-2209078 | Msa0343760:CDS | 40.0% | |
| GCTGTGAAGGTAATTTAACC+TGG | + | chr3_1:2209110-2209129 | Msa0343760:intron | 40.0% | |
| AGAAATCGAAGAAGTTACCG+GGG | + | chr3_1:2209326-2209345 | Msa0343760:CDS | 40.0% | |
| ! | AAATGTAGTCAGCTTTTCCC+CGG | - | chr3_1:2209346-2209365 | None:intergenic | 40.0% |
| !! | TGGTAATGGTATGTTGGCAA+TGG | - | chr3_1:2209525-2209544 | None:intergenic | 40.0% |
| TGCCAACATACCATTACCAT+TGG | + | chr3_1:2209526-2209545 | Msa0343760:intron | 40.0% | |
| GCTGCTAAAACCAATGGTAA+TGG | - | chr3_1:2209539-2209558 | None:intergenic | 40.0% | |
| ! | CTTGAAAGCATATACCCTCT+TGG | - | chr3_1:2209627-2209646 | None:intergenic | 40.0% |
| ! | CAAGAGGGTATATGCTTTCA+AGG | + | chr3_1:2209625-2209644 | Msa0343760:CDS | 40.0% |
| GGTCCTTCCTTAATAAGGTT+TGG | - | chr3_1:2209937-2209956 | None:intergenic | 40.0% | |
| TAGAAGAGATATGGCCAATG+TGG | - | chr3_1:2209958-2209977 | None:intergenic | 40.0% | |
| !! | CGCATTGACTAGAAGAGATA+TGG | - | chr3_1:2209967-2209986 | None:intergenic | 40.0% |
| !! | ACCGGCTTGATAGAAATTTC+TGG | + | chr3_1:2210001-2210020 | Msa0343760:intron | 40.0% |
| GCCAGAAATTTCTATCAAGC+CGG | - | chr3_1:2210005-2210024 | None:intergenic | 40.0% | |
| GTGCCTTGCGATATATAGAT+AGG | + | chr3_1:2210037-2210056 | Msa0343760:intron | 40.0% | |
| TGGATCTCTAGCTACAATGA+AGG | + | chr3_1:2210073-2210092 | Msa0343760:intron | 40.0% | |
| GGTCCATCCTTTATAAGGTT+AGG | - | chr3_1:2210108-2210127 | None:intergenic | 40.0% | |
| ! | CCACATTGACTAGAGATATG+TGG | - | chr3_1:2210129-2210148 | None:intergenic | 40.0% |
| CCACATATCTCTAGTCAATG+TGG | + | chr3_1:2210126-2210145 | Msa0343760:intron | 40.0% | |
| AGGTGGATAATAAGACATCC+AGG | + | chr3_1:2210375-2210394 | Msa0343760:intron | 40.0% | |
| AGCATTTCAAAAGGTTTGCC+TGG | - | chr3_1:2210396-2210415 | None:intergenic | 40.0% | |
| ! | TCCTCGTCGCTGAAAATTTT+GGG | - | chr3_1:2210779-2210798 | None:intergenic | 40.0% |
| TTGTGTGCACTGTCAATTAG+TGG | + | chr3_1:2210904-2210923 | Msa0343760:intron | 40.0% | |
| !!! | ATTAGTGGATTTTCCCCAGA+AGG | + | chr3_1:2210919-2210938 | Msa0343760:intron | 40.0% |
| ! | CTACCAATCTAGGATAGACA+AGG | + | chr3_1:2211313-2211332 | Msa0343760:CDS | 40.0% |
| ! | GTACCAAACACAATTTCTGG+TGG | + | chr3_1:2211475-2211494 | Msa0343760:three_prime_UTR | 40.0% |
| ACTGAGAAACCCGACGATAA+TGG | + | chr3_1:2205202-2205221 | Msa0343760:exon | 45.0% | |
| GGTGAACGAGCGAATAATTG+AGG | - | chr3_1:2205362-2205381 | None:intergenic | 45.0% | |
| CAATTATTCGCTCGTTCACC+TGG | + | chr3_1:2205362-2205381 | Msa0343760:CDS | 45.0% | |
| TTATCCTGCTGATCCTCTTC+AGG | + | chr3_1:2205642-2205661 | Msa0343760:CDS | 45.0% | |
| TGTGTGTTTGCTTCCACCTT+TGG | + | chr3_1:2205850-2205869 | Msa0343760:intron | 45.0% | |
| CTATGCGAAATTGAAGGGAG+TGG | + | chr3_1:2206413-2206432 | Msa0343760:CDS | 45.0% | |
| ACAAGAACGTCAAGTCCAAC+AGG | - | chr3_1:2206450-2206469 | None:intergenic | 45.0% | |
| GGACTTGACGTTCTTGTTGA+TGG | + | chr3_1:2206453-2206472 | Msa0343760:CDS | 45.0% | |
| !! | CATGTCTTTGGTTTGTTGGC+GGG | + | chr3_1:2206584-2206603 | Msa0343760:intron | 45.0% |
| !! | ATGTCTTTGGTTTGTTGGCG+GGG | + | chr3_1:2206585-2206604 | Msa0343760:intron | 45.0% |
| GTTGGCGGGGTTATATTAAG+AGG | + | chr3_1:2206598-2206617 | Msa0343760:intron | 45.0% | |
| TTCCCAAAGGTCTGCTTTCT+GGG | + | chr3_1:2206715-2206734 | Msa0343760:intron | 45.0% | |
| GACCAGGTCAGATCTTCAAA+GGG | - | chr3_1:2207112-2207131 | None:intergenic | 45.0% | |
| CGACATATTGGGACACAATC+TGG | + | chr3_1:2207412-2207431 | Msa0343760:CDS | 45.0% | |
| CATATTGGGACACAATCTGG+TGG | + | chr3_1:2207415-2207434 | Msa0343760:CDS | 45.0% | |
| ! | GTAAAGCTTCTAAGGAACGG+TGG | - | chr3_1:2207540-2207559 | None:intergenic | 45.0% |
| CCTATGCGGCTATGTGTATA+CGG | + | chr3_1:2207633-2207652 | Msa0343760:intron | 45.0% | |
| CTATGCGGCTATGTGTATAC+GGG | + | chr3_1:2207634-2207653 | Msa0343760:intron | 45.0% | |
| AGCAACAAAGAGGGAGTGAT+GGG | - | chr3_1:2208047-2208066 | None:intergenic | 45.0% | |
| TAGCAACAAAGAGGGAGTGA+TGG | - | chr3_1:2208048-2208067 | None:intergenic | 45.0% | |
| GCATTACACTACTTCCAACC+AGG | + | chr3_1:2208129-2208148 | Msa0343760:intron | 45.0% | |
| TACTTACGATACGACCTGGT+TGG | - | chr3_1:2208146-2208165 | None:intergenic | 45.0% | |
| ! | GGACCTTCTGACATTTTACC+TGG | + | chr3_1:2208244-2208263 | Msa0343760:intron | 45.0% |
| TCGACAGGCAATCTCTGTTA+TGG | + | chr3_1:2208294-2208313 | Msa0343760:intron | 45.0% | |
| CAGTTCTGCAAACCCATTCT+TGG | - | chr3_1:2208320-2208339 | None:intergenic | 45.0% | |
| TTTCAACCCAATTCGTGCGA+CGG | + | chr3_1:2208345-2208364 | Msa0343760:CDS | 45.0% | |
| CTGAGACTCTGCCAAAGAAT+TGG | - | chr3_1:2208407-2208426 | None:intergenic | 45.0% | |
| TTCTTTGGCAGAGTCTCAGA+AGG | + | chr3_1:2208408-2208427 | Msa0343760:CDS | 45.0% | |
| !! | TAATGTGGACTAGTGGTGAG+TGG | - | chr3_1:2208677-2208696 | None:intergenic | 45.0% |
| !! | GCTAGTTTGCTTAGATGGAC+CGG | + | chr3_1:2208891-2208910 | Msa0343760:intron | 45.0% |
| GCTCGCTATAAAGCTAGGAA+TGG | + | chr3_1:2208989-2209008 | Msa0343760:CDS | 45.0% | |
| ATTACCTTCACAGCGAGTAC+AGG | - | chr3_1:2209104-2209123 | None:intergenic | 45.0% | |
| TTTAAGAGTGGCATCACACC+AGG | - | chr3_1:2209131-2209150 | None:intergenic | 45.0% | |
| ATGTATGGCGTACCACAGTT+AGG | + | chr3_1:2209463-2209482 | Msa0343760:intron | 45.0% | |
| ACGTGTATTCAGAAGCCAAG+AGG | + | chr3_1:2209609-2209628 | Msa0343760:CDS | 45.0% | |
| CGTGTATTCAGAAGCCAAGA+GGG | + | chr3_1:2209610-2209629 | Msa0343760:CDS | 45.0% | |
| !! | TCTATCAAGCCGGTTTGACT+AGG | - | chr3_1:2209995-2210014 | None:intergenic | 45.0% |
| GATGGGGATGAAAGAACTAG+TGG | + | chr3_1:2210561-2210580 | Msa0343760:intron | 45.0% | |
| ! | ACCCAAAATTTTCAGCGACG+AGG | + | chr3_1:2210775-2210794 | Msa0343760:intron | 45.0% |
| ! | CTCCTCGTCGCTGAAAATTT+TGG | - | chr3_1:2210780-2210799 | None:intergenic | 45.0% |
| GAGGAGACGCTAAAGAAACT+TGG | + | chr3_1:2210794-2210813 | Msa0343760:CDS | 45.0% | |
| TGAAATCAGCTGTCCAGAGT+TGG | + | chr3_1:2211064-2211083 | Msa0343760:intron | 45.0% | |
| ! | TCTCGTGACAATGGTGCTTT+TGG | + | chr3_1:2211104-2211123 | Msa0343760:CDS | 45.0% |
| !!! | ACAATGGTGCTTTTGGAGCA+AGG | + | chr3_1:2211111-2211130 | Msa0343760:CDS | 45.0% |
| CACCCTTGTCTATCCTAGAT+TGG | - | chr3_1:2211319-2211338 | None:intergenic | 45.0% | |
| ATCAACAGAGAAGTGGGTGA+AGG | - | chr3_1:2211426-2211445 | None:intergenic | 45.0% | |
| !!! | TTTACTATTTAAATTTTATA+TGG | + | chr3_1:2209175-2209194 | Msa0343760:intron | 5.0% |
| ! | AATCTAGAGCCTGTCTACGG+CGG | + | chr3_1:2205260-2205279 | Msa0343760:CDS | 50.0% |
| TGAACCTGAAGAGGATCAGC+AGG | - | chr3_1:2205649-2205668 | None:intergenic | 50.0% | |
| ATCACTTCCGGCTCTTCCAA+AGG | - | chr3_1:2205869-2205888 | None:intergenic | 50.0% | |
| AATCAACTCACCTGTCGGCA+CGG | - | chr3_1:2206481-2206500 | None:intergenic | 50.0% | |
| TTCGGGACTATCAAGCTCTG+CGG | + | chr3_1:2206642-2206661 | Msa0343760:CDS | 50.0% | |
| CTTCCCAAAGGTCTGCTTTC+TGG | + | chr3_1:2206714-2206733 | Msa0343760:intron | 50.0% | |
| AGCCCAGAAAGCAGACCTTT+GGG | - | chr3_1:2206720-2206739 | None:intergenic | 50.0% | |
| AGACAGCTCTTGCTGAAGCA+TGG | + | chr3_1:2206774-2206793 | Msa0343760:intron | 50.0% | |
| ! | CACCCTTTGAAGATCTGACC+TGG | + | chr3_1:2207107-2207126 | Msa0343760:intron | 50.0% |
| GGACCAGGTCAGATCTTCAA+AGG | - | chr3_1:2207113-2207132 | None:intergenic | 50.0% | |
| ACAATCTGGTGGGATGGATC+AGG | + | chr3_1:2207426-2207445 | Msa0343760:CDS | 50.0% | |
| CCGTATACACATAGCCGCAT+AGG | - | chr3_1:2207636-2207655 | None:intergenic | 50.0% | |
| ATCACAAAAGTCCCACCAGC+AGG | - | chr3_1:2208382-2208401 | None:intergenic | 50.0% | |
| !! | GGACTAGTGGTGAGTGGTTT+TGG | - | chr3_1:2208671-2208690 | None:intergenic | 50.0% |
| TGATCCTGTACTCGCTGTGA+AGG | + | chr3_1:2209097-2209116 | Msa0343760:CDS | 50.0% | |
| GGCGTACCACAGTTAGGAAA+TGG | + | chr3_1:2209469-2209488 | Msa0343760:intron | 50.0% | |
| TGCGGGATTCCTAGTCAAAC+CGG | + | chr3_1:2209983-2210002 | Msa0343760:intron | 50.0% | |
| ! | TACGTGCCTGATCTAGCTTG+TGG | + | chr3_1:2210434-2210453 | Msa0343760:intron | 50.0% |
| !!! | GCTTTTGGAGCAAGGCTTAC+TGG | + | chr3_1:2211119-2211138 | Msa0343760:CDS | 50.0% |
| AAGGCTTACTGGAGCTGGAT+GGG | + | chr3_1:2211130-2211149 | Msa0343760:CDS | 50.0% | |
| TTTGCTTCCAAGCCATCGAG+TGG | + | chr3_1:2211371-2211390 | Msa0343760:CDS | 50.0% | |
| AAGATGGCAGAACCACTCGA+TGG | - | chr3_1:2211386-2211405 | None:intergenic | 50.0% | |
| TCGTGCGTCGCCATTATCGT+CGG | - | chr3_1:2205215-2205234 | None:intergenic | 55.0% | |
| ! | GCTTCCACCTTTGGAAGAGC+CGG | + | chr3_1:2205859-2205878 | Msa0343760:intron | 55.0% |
| ACTTCCGGCTCTTCCAAAGG+TGG | - | chr3_1:2205866-2205885 | None:intergenic | 55.0% | |
| GTGGATGTTGGCGAACCTGT+TGG | + | chr3_1:2206432-2206451 | Msa0343760:CDS | 55.0% | |
| CAGCCCAGAAAGCAGACCTT+TGG | - | chr3_1:2206721-2206740 | None:intergenic | 55.0% | |
| TGGGACACAATCTGGTGGGA+TGG | + | chr3_1:2207420-2207439 | Msa0343760:CDS | 55.0% | |
| GATGGTATAAGGGGGCGGTA+GGG | - | chr3_1:2208099-2208118 | None:intergenic | 55.0% | |
| TGATGGTATAAGGGGGCGGT+AGG | - | chr3_1:2208100-2208119 | None:intergenic | 55.0% | |
| ! | GCACTGATGGTATAAGGGGG+CGG | - | chr3_1:2208104-2208123 | None:intergenic | 55.0% |
| GCACATCCGTCGCACGAATT+GGG | - | chr3_1:2208354-2208373 | None:intergenic | 55.0% | |
| TGCACATCCGTCGCACGAAT+TGG | - | chr3_1:2208355-2208374 | None:intergenic | 55.0% | |
| ATGTGCAACTGCCTGCTGGT+GGG | + | chr3_1:2208368-2208387 | Msa0343760:CDS | 55.0% | |
| GCTAGGAATGGCACCAACTG+AGG | + | chr3_1:2209001-2209020 | Msa0343760:CDS | 55.0% | |
| CAAGGCTTACTGGAGCTGGA+TGG | + | chr3_1:2211129-2211148 | Msa0343760:CDS | 55.0% | |
| AGGCTTACTGGAGCTGGATG+GGG | + | chr3_1:2211131-2211150 | Msa0343760:CDS | 55.0% | |
| ! | GGGTGGTTGTGCTGTTGCTT+TGG | + | chr3_1:2211151-2211170 | Msa0343760:CDS | 55.0% |
| CGTGCGTCGCCATTATCGTC+GGG | - | chr3_1:2205214-2205233 | None:intergenic | 60.0% | |
| GATGAACCTCCGCCGTAGAC+AGG | - | chr3_1:2205272-2205291 | None:intergenic | 60.0% | |
| ACGGATGTGCAACTGCCTGC+TGG | + | chr3_1:2208364-2208383 | Msa0343760:CDS | 60.0% | |
| GATGTGCAACTGCCTGCTGG+TGG | + | chr3_1:2208367-2208386 | Msa0343760:CDS | 60.0% | |
| GGAGCAAGGCTTACTGGAGC+TGG | + | chr3_1:2211125-2211144 | Msa0343760:CDS | 60.0% | |
| CTTACTGGAGCTGGATGGGG+TGG | + | chr3_1:2211134-2211153 | Msa0343760:CDS | 60.0% | |
| GGCAGAACCACTCGATGGCT+TGG | - | chr3_1:2211381-2211400 | None:intergenic | 60.0% | |
| CTAGAGCCTGTCTACGGCGG+AGG | + | chr3_1:2205263-2205282 | Msa0343760:CDS | 65.0% | |
| ! | GTTGATGGGACCGTGCCGAC+AGG | + | chr3_1:2206468-2206487 | Msa0343760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 2204987 | 2211799 | 2204987 | ID=Msa0343760;Name=Msa0343760 |
| chr3_1 | mRNA | 2204987 | 2211799 | 2204987 | ID=Msa0343760-mRNA-1;Parent=Msa0343760;Name=Msa0343760-mRNA-1;_AED=0.15;_eAED=0.15;_QI=234|1|1|1|1|1|13|384|497 |
| chr3_1 | exon | 2204987 | 2205383 | 2204987 | ID=Msa0343760-mRNA-1:exon:678;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2205485 | 2205663 | 2205485 | ID=Msa0343760-mRNA-1:exon:679;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2206165 | 2206211 | 2206165 | ID=Msa0343760-mRNA-1:exon:680;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2206395 | 2206489 | 2206395 | ID=Msa0343760-mRNA-1:exon:681;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2206641 | 2206723 | 2206641 | ID=Msa0343760-mRNA-1:exon:682;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2207379 | 2207447 | 2207379 | ID=Msa0343760-mRNA-1:exon:683;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2208301 | 2208486 | 2208301 | ID=Msa0343760-mRNA-1:exon:684;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2208984 | 2209118 | 2208984 | ID=Msa0343760-mRNA-1:exon:685;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2209294 | 2209428 | 2209294 | ID=Msa0343760-mRNA-1:exon:686;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2209599 | 2209669 | 2209599 | ID=Msa0343760-mRNA-1:exon:687;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2210790 | 2210867 | 2210790 | ID=Msa0343760-mRNA-1:exon:688;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2211073 | 2211214 | 2211073 | ID=Msa0343760-mRNA-1:exon:689;Parent=Msa0343760-mRNA-1 |
| chr3_1 | exon | 2211305 | 2211799 | 2211305 | ID=Msa0343760-mRNA-1:exon:690;Parent=Msa0343760-mRNA-1 |
| chr3_1 | five_prime_UTR | 2204987 | 2205220 | 2204987 | ID=Msa0343760-mRNA-1:five_prime_utr;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2205221 | 2205383 | 2205221 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2205485 | 2205663 | 2205485 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2206165 | 2206211 | 2206165 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2206395 | 2206489 | 2206395 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2206641 | 2206723 | 2206641 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2207379 | 2207447 | 2207379 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2208301 | 2208486 | 2208301 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2208984 | 2209118 | 2208984 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2209294 | 2209428 | 2209294 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2209599 | 2209669 | 2209599 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2210790 | 2210867 | 2210790 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2211073 | 2211214 | 2211073 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | CDS | 2211305 | 2211415 | 2211305 | ID=Msa0343760-mRNA-1:cds;Parent=Msa0343760-mRNA-1 |
| chr3_1 | three_prime_UTR | 2211416 | 2211799 | 2211416 | ID=Msa0343760-mRNA-1:three_prime_utr;Parent=Msa0343760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
