AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1370500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370500 MtrunA17_Chr4g0073971 98.589 567 8 0 1 567 1 567 0.0 1127
Msa1370500 MtrunA17_Chr2g0305841 74.688 561 126 7 20 567 26 583 0.0 826
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370500 AT2G24200.2 78.571 518 109 1 50 567 4 519 0.0 844
Msa1370500 AT2G24200.1 78.571 518 109 1 50 567 4 519 0.0 844
Msa1370500 AT4G30920.1 75.413 545 132 2 24 567 39 582 0.0 827
Msa1370500 AT4G30910.1 72.578 547 148 2 22 567 36 581 0.0 784
Msa1370500 AT4G30910.2 69.649 570 148 3 22 567 36 604 0.0 771
Msa1370500 AT2G24200.3 72.973 518 102 2 50 567 4 483 0.0 767
Msa1370500 AT5G13940.1 72.549 51 14 0 278 328 66 116 2.57e-16 83.2

Find 214 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAAATCATCTTGCTTTA+AGG 0.078973 tig0019129:+114316 Msa1370500:three_prime_UTR
TAATTATCATCCTTTGTTTC+TGG 0.117008 tig0019129:-114868 Msa1370510:intron
CTGAAATCTTCAAATATTAT+TGG 0.177832 tig0019129:+113844 Msa1370500:three_prime_UTR
TAGATGCTTAACTGAATTAT+TGG 0.179256 tig0019129:-114037 None:intergenic
TCCAATTCCAATCATTATTT+AGG 0.182086 tig0019129:+115055 Msa1370500:three_prime_UTR
GTTAGATCCATTGACATTAT+TGG 0.185386 tig0019129:+110255 Msa1370500:CDS
TTCAACTACTGCACTGTATA+AGG 0.215864 tig0019129:+109747 Msa1370500:CDS
TCAACCGTTGTTAGGATTAA+AGG 0.216149 tig0019129:+109679 Msa1370500:CDS
ATTAAGCACGCACCTGTTTC+AGG 0.219303 tig0019129:-113381 None:intergenic
ATTGATTTGGCAACCTTAAC+TGG 0.220073 tig0019129:+112901 Msa1370500:CDS
TGAACTCATGAAATTTGATA+TGG 0.264305 tig0019129:+111340 Msa1370500:CDS
CGTTCTTCGAAGTGTCTCTT+TGG 0.264938 tig0019129:-114574 Msa1370510:intron
CTCGTATATGTGCTGTTCTT+TGG 0.270383 tig0019129:-114829 Msa1370510:CDS
TCTTCTTCAGATTATTGATT+TGG 0.273791 tig0019129:+112888 Msa1370500:intron
TCATCCTTTGTTTCTGGAAT+TGG 0.279668 tig0019129:-114862 Msa1370510:intron
TCAGTGCAAGGAATTGAAAA+TGG 0.287397 tig0019129:+110577 Msa1370500:CDS
TCCCAGTAGCTTTCCTCTAT+TGG 0.292216 tig0019129:-113283 None:intergenic
TGAACTGGTAAAAGAAGTTT+TGG 0.297980 tig0019129:+113222 Msa1370500:CDS
TCCTAAATAATGATTGGAAT+TGG 0.311910 tig0019129:-115056 None:intergenic
TAGTTTCAACCATTATAATT+TGG 0.313757 tig0019129:-114601 Msa1370510:intron
ATGGTCTATGCTTGCATGCT+TGG 0.320759 tig0019129:-114653 Msa1370510:intron
CAGAAGCTATGGCCGCCATT+AGG 0.320957 tig0019129:-109127 None:intergenic
TCCATTGACATTATTGGTCT+TGG 0.330495 tig0019129:+110261 Msa1370500:CDS
GTCTCTTTGGGTAATTTAGA+AGG 0.336592 tig0019129:-114561 Msa1370510:intron
GACATTATTGGTCTTGGAAC+GGG 0.342266 tig0019129:+110267 Msa1370500:CDS
ATCTCTCGAGGAGGAATATA+AGG 0.347554 tig0019129:+115107 Msa1370500:three_prime_UTR
TCTTGGAACGGGACCTGAAT+TGG 0.350120 tig0019129:+110278 Msa1370500:CDS
TTGGTCAATCAACCGTTGTT+AGG 0.351523 tig0019129:+109671 Msa1370500:CDS
TATGCTGGAGATGTTTCTTC+TGG 0.355442 tig0019129:+110315 Msa1370500:CDS
GCTCTTGGGCCCTCAATTGC+AGG 0.355562 tig0019129:+112937 Msa1370500:CDS
GACAATTGGGCCAAGTTCTA+TGG 0.355591 tig0019129:-114672 Msa1370510:intron
CAGAAGATAAATCCCGATTC+TGG 0.357189 tig0019129:+114939 Msa1370500:three_prime_UTR
CAAATGTTGTTCGCGCTCAT+AGG 0.368494 tig0019129:-114781 Msa1370510:CDS
GAAATCAGGAGTGGCTGATA+TGG 0.370259 tig0019129:+113312 Msa1370500:CDS
AATTGTGCTAGGGGCTGTGC+TGG 0.374616 tig0019129:+110185 Msa1370500:intron
AGGTGAGTGGGGAGAAACTA+TGG 0.382649 tig0019129:+113254 Msa1370500:CDS
TGCTTATACTTGGATTGGAT+TGG 0.384255 tig0019129:-114342 None:intergenic
AGTTCGTCAAAGAAGACAAT+TGG 0.384611 tig0019129:-114686 Msa1370510:CDS
AGAAGCTATGGCCGCCATTA+GGG 0.385297 tig0019129:-109126 None:intergenic
TTGAAAATGGGGTCCTATCT+AGG 0.385305 tig0019129:+110590 Msa1370500:CDS
GGGGCATGTGTAGTTGCTCT+TGG 0.391607 tig0019129:+112922 Msa1370500:CDS
GATTCCAGCACTTGAGCATA+TGG 0.395770 tig0019129:+114709 Msa1370500:three_prime_UTR
GTTGGCAGAAGAGGCATCTA+AGG 0.398414 tig0019129:+110505 Msa1370500:CDS
GAACGTGGACCAAATTATAA+TGG 0.402272 tig0019129:+114592 Msa1370500:three_prime_UTR
AGCCAATTAAAATTAAAATC+AGG 0.403465 tig0019129:-109047 None:intergenic
AGGATTGGTTTGATCGGTCT+TGG 0.403728 tig0019129:+109715 Msa1370500:CDS
TGTAAAGGTCAAGCTGGCTT+TGG 0.404040 tig0019129:+110679 Msa1370500:CDS
CGTTGCTACTCTAGTGGAAT+GGG 0.404049 tig0019129:+113794 Msa1370500:CDS
TTGGTCAAATCAAACCTCTT+GGG 0.406712 tig0019129:+111399 Msa1370500:CDS
GTATTGGTGGTTCATCAAAA+TGG 0.412096 tig0019129:-114472 Msa1370510:CDS
TACTGGGAATCAATGAAATC+AGG 0.417445 tig0019129:+113298 Msa1370500:CDS
CCAATCCAAGTATAAGCAAA+AGG 0.418594 tig0019129:+114347 Msa1370500:three_prime_UTR
GGGCATGTGTAGTTGCTCTT+GGG 0.422892 tig0019129:+112923 Msa1370500:CDS
CGATTGATAATGAAAGTTGC+AGG 0.422947 tig0019129:-108964 None:intergenic
CAGTGCAAGGAATTGAAAAT+GGG 0.425078 tig0019129:+110578 Msa1370500:CDS
GCGTTGCTACTCTAGTGGAA+TGG 0.434843 tig0019129:+113793 Msa1370500:CDS
TTAGAAGGATCGAAATTCTT+CGG 0.441876 tig0019129:-114546 Msa1370510:intron
ATCTTGTCCTAAATAATGAT+TGG 0.441885 tig0019129:-115062 None:intergenic
AACTACACATGCCCCAGTTA+AGG 0.441925 tig0019129:-112914 None:intergenic
GAGAATATGATCAGTGGAAC+AGG 0.442053 tig0019129:+111733 Msa1370500:CDS
TGGAAGCTTCTGAGGTGAGT+GGG 0.445335 tig0019129:+113242 Msa1370500:CDS
GTTCTTCGAAGTGTCTCTTT+GGG 0.446315 tig0019129:-114573 Msa1370510:intron
ATTGTTCTTGCCTCTTCTGA+AGG 0.447563 tig0019129:+109826 Msa1370500:CDS
CGCAGCTGCTAAGTCTGCTC+AGG 0.448202 tig0019129:+109789 Msa1370500:CDS
TCAACTACTGCACTGTATAA+GGG 0.451795 tig0019129:+109748 Msa1370500:CDS
TTTATGAATAAGTAATTTGA+TGG 0.452718 tig0019129:+113933 Msa1370500:three_prime_UTR
GAACAAGATTGATTTGAAGT+TGG 0.456119 tig0019129:+109600 Msa1370500:CDS
CTTGGTCAAATCAAACCTCT+TGG 0.456662 tig0019129:+111398 Msa1370500:CDS
GACAAGAAGCGCTCAGCGAC+AGG 0.458688 tig0019129:+113765 Msa1370500:CDS
AAGCTGGCTTTGGTTGGAAA+AGG 0.463001 tig0019129:+110689 Msa1370500:CDS
CTTAGGGGATTCGATGTTGG+TGG 0.464392 tig0019129:-109297 None:intergenic
ACTGCTTATGCAATTGCATC+TGG 0.464876 tig0019129:+109874 Msa1370500:CDS
TTTGTAGTTTGTTGATGAAA+AGG 0.465143 tig0019129:+113701 Msa1370500:intron
AGCGGTGAAAACATCACTAT+AGG 0.468504 tig0019129:-110537 None:intergenic
ACTATGGAGGCTGCCAATAG+AGG 0.468865 tig0019129:+113270 Msa1370500:CDS
TCTTCTGAAGAGGATTTCTC+TGG 0.470409 tig0019129:+109643 Msa1370500:CDS
TCCAAGACCAATAATGTCAA+TGG 0.470434 tig0019129:-110262 None:intergenic
TAGACTCTCCCACACCCTAA+TGG 0.471832 tig0019129:+109112 Msa1370500:exon
TTGGAGGTTTGTAAGTAAGA+TGG 0.473742 tig0019129:-110649 None:intergenic
GAGGATTTCTCTGGTAAAGT+TGG 0.474128 tig0019129:+109652 Msa1370500:CDS
GGACTTGGATCAAAGAGGAT+TGG 0.480400 tig0019129:+109700 Msa1370500:CDS
GTTCTTTGGAAGATTGATCA+TGG 0.481023 tig0019129:-114815 Msa1370510:CDS
TTAGGGGATTCGATGTTGGT+GGG 0.482229 tig0019129:-109296 None:intergenic
TCGGCCATCAGTAGTTCAAA+TGG 0.483479 tig0019129:-114293 None:intergenic
AAGATTGATTTGAAGTTGGA+TGG 0.484032 tig0019129:+109604 Msa1370500:CDS
CACTTGGCGCATGTTCATGA+AGG 0.484532 tig0019129:+114972 Msa1370500:three_prime_UTR
CTCAGGGGTGTTGGCAGAAG+AGG 0.487176 tig0019129:+110496 Msa1370500:intron
GCTTGCATGCTTGGTTGGAG+TGG 0.487217 tig0019129:-114644 Msa1370510:intron
ATCTGAAGCTTCTTCTGAAG+AGG 0.487237 tig0019129:+109633 Msa1370500:CDS
GATGTTGTCACAGCTTCAAA+TGG 0.489147 tig0019129:+111769 Msa1370500:CDS
GTGGGAATGATATCCAGAAT+CGG 0.492243 tig0019129:-114952 Msa1370510:CDS
TCTATGCTTGCATGCTTGGT+TGG 0.492513 tig0019129:-114649 Msa1370510:intron
GCTTCTCGAGATGATAGAAT+AGG 0.494096 tig0019129:-114427 None:intergenic
TTATACAGTGCAGTAGTTGA+AGG 0.495394 tig0019129:-109745 None:intergenic
CAAGCATAGACCATAGAACT+TGG 0.496014 tig0019129:+114662 Msa1370500:three_prime_UTR
AATCAAACCTCTTGGGGTGG+AGG 0.496211 tig0019129:+111406 Msa1370500:CDS
GGCTGCAGCAACACCTAGAT+AGG 0.496969 tig0019129:-110603 None:intergenic
ACCTTTACAGATCCACTTGG+AGG 0.500187 tig0019129:-110665 None:intergenic
TGCCAATAGAGGAAAGCTAC+TGG 0.500297 tig0019129:+113281 Msa1370500:CDS
ATGTCAAAGGTTAGTAGTAT+TGG 0.501530 tig0019129:-114488 Msa1370510:CDS
ACTCACACTGGCAGATGCTC+TGG 0.502116 tig0019129:+112320 Msa1370500:CDS
GTTGTTAGGATTAAAGGACT+TGG 0.504860 tig0019129:+109685 Msa1370500:CDS
TTGTAACCAAGGTGTTGAAA+AGG 0.505556 tig0019129:+112350 Msa1370500:CDS
AAGGTCAAGCTGGCTTTGGT+TGG 0.507620 tig0019129:+110683 Msa1370500:CDS
GAACTCATGAAATTTGATAT+GGG 0.511960 tig0019129:+111341 Msa1370500:CDS
AGTGAGAAAGAGAGAAGAAG+AGG 0.514407 tig0019129:-109177 None:intergenic
CGGGAAGAAGAAAACACTAC+TGG 0.514621 tig0019129:-114098 None:intergenic
CTTGCATGCTTGGTTGGAGT+GGG 0.515060 tig0019129:-114643 Msa1370510:intron
TTGATTTGGCAACCTTAACT+GGG 0.515543 tig0019129:+112902 Msa1370500:CDS
TGGGAATGATATCCAGAATC+GGG 0.516246 tig0019129:-114951 Msa1370510:CDS
CAAAAGTTAAAGTTCCTCCT+AGG 0.516457 tig0019129:+114373 Msa1370500:three_prime_UTR
GAAGCTGTGACAACATCTCC+AGG 0.517489 tig0019129:-111763 None:intergenic
AGTGGAACAGGTATGAGGCC+TGG 0.518327 tig0019129:+111745 Msa1370500:CDS
CCTGCTAATGTTCTCACACC+AGG 0.523507 tig0019129:+110369 Msa1370500:CDS
AATAACAATGGCAGAAGCTA+TGG 0.524957 tig0019129:-109138 None:intergenic
AACCTTAGGGGATTCGATGT+TGG 0.525516 tig0019129:-109300 None:intergenic
TGGATCTGTAAAGGTCAAGC+TGG 0.527351 tig0019129:+110673 Msa1370500:CDS
ATGTCAATGGATCTAACTGC+TGG 0.528088 tig0019129:-110249 None:intergenic
ATATCCATATGCTCAAGTGC+TGG 0.528675 tig0019129:-114713 Msa1370510:CDS
CAATCCAAGTATAAGCAAAA+GGG 0.529205 tig0019129:+114348 Msa1370500:three_prime_UTR
GTTCGTCAAAGAAGACAATT+GGG 0.529438 tig0019129:-114685 Msa1370510:CDS
TTAGGCGCTGCAAAAGCACT+TGG 0.530667 tig0019129:+111380 Msa1370500:CDS
GTTGAATGAAAGCTTCGCTT+AGG 0.533152 tig0019129:-109224 None:intergenic
CTATCCATTTGAACTACTGA+TGG 0.536121 tig0019129:+114289 Msa1370500:three_prime_UTR
ATGAGTTCAATTGAACAGCC+AGG 0.536964 tig0019129:-111326 None:intergenic
TGATCAGTGGAACAGGTATG+AGG 0.537047 tig0019129:+111740 Msa1370500:CDS
TCAAAGGTTAGTAGTATTGG+TGG 0.540634 tig0019129:-114485 Msa1370510:CDS
TGACATTATTGGTCTTGGAA+CGG 0.541864 tig0019129:+110266 Msa1370500:CDS
ACCTCCAAGTGGATCTGTAA+AGG 0.542413 tig0019129:+110664 Msa1370500:CDS
TACAACATCAAGACTGGACC+TGG 0.549144 tig0019129:+111308 Msa1370500:CDS
ATTTGGCGTTGCTACTCTAG+TGG 0.550785 tig0019129:+113788 Msa1370500:CDS
CGACATTCAGCTCATGTCAA+AGG 0.553344 tig0019129:-114501 Msa1370510:CDS
GCCAATAGAGGAAAGCTACT+GGG 0.555482 tig0019129:+113282 Msa1370500:CDS
TCTAGGTGTTGCTGCAGCCT+CGG 0.555653 tig0019129:+110607 Msa1370500:CDS
TTGTTGATGAAAAGGTTCAA+TGG 0.556752 tig0019129:+113709 Msa1370500:CDS
TGGTCAAATCAAACCTCTTG+GGG 0.558742 tig0019129:+111400 Msa1370500:CDS
GGTGGCTACAACATCAAGAC+TGG 0.559048 tig0019129:+111302 Msa1370500:CDS
CTATGGCCGCCATTAGGGTG+TGG 0.559450 tig0019129:-109121 None:intergenic
ATAAGTAATTTGATGGTGGA+TGG 0.561782 tig0019129:+113940 Msa1370500:three_prime_UTR
GTAAACACTGGTGGTAGACC+AGG 0.562483 tig0019129:+113334 Msa1370500:CDS
CCTGGTGTGAGAACATTAGC+AGG 0.565403 tig0019129:-110369 None:intergenic
ATGAATAAGTAATTTGATGG+TGG 0.565978 tig0019129:+113936 Msa1370500:three_prime_UTR
AAGAAGAAAATTAACCTTAG+GGG 0.566260 tig0019129:-109312 None:intergenic
AATGTCGAGATCAGTTTCCC+CGG 0.566460 tig0019129:+114517 Msa1370500:three_prime_UTR
GGTAGTGCTGTTTACACTTG+AGG 0.567270 tig0019129:+109000 Msa1370500:five_prime_UTR
TTTGGATGAATAAGATGTGA+TGG 0.567909 tig0019129:+109073 Msa1370500:five_prime_UTR
AATCGGGATTTATCTTCTGA+TGG 0.568388 tig0019129:-114935 Msa1370510:intron
TTCTGGATATCATTCCCACT+TGG 0.568445 tig0019129:+114956 Msa1370500:three_prime_UTR
ATTGTGCTAGGGGCTGTGCT+GGG 0.569150 tig0019129:+110186 Msa1370500:intron
CACCAACATCGAATCCCCTA+AGG 0.573206 tig0019129:+109298 Msa1370500:CDS
CGGATGTTGATGTGACTGAA+TGG 0.573571 tig0019129:+109497 Msa1370500:CDS
ACTGCACTGTATAAGGGTCT+TGG 0.574721 tig0019129:+109754 Msa1370500:CDS
TTGGAAGCTTCTGAGGTGAG+TGG 0.576502 tig0019129:+113241 Msa1370500:CDS
GGGGTGAGTGAGGCCGAGAG+TGG 0.577763 tig0019129:-109276 None:intergenic
TGAAGAAAGTCCTTCAGAAG+AGG 0.580183 tig0019129:-109836 None:intergenic
TTGACCTTTACAGATCCACT+TGG 0.582503 tig0019129:-110668 None:intergenic
TCAAAGAGGATTGGTTTGAT+CGG 0.585762 tig0019129:+109709 Msa1370500:CDS
CTGGTATATGCTTGTAACCA+AGG 0.587703 tig0019129:+112339 Msa1370500:CDS
GGTCATAATACTCTTTACCT+AGG 0.588051 tig0019129:-114390 None:intergenic
CAGTCACGTGACACCACTCT+CGG 0.591727 tig0019129:+109263 Msa1370500:CDS
TATGGCCGCCATTAGGGTGT+GGG 0.593825 tig0019129:-109120 None:intergenic
GAAAGGAGACATACTAGCAG+TGG 0.593850 tig0019129:+109519 Msa1370500:CDS
TCTTCCAATTCCAGAAACAA+AGG 0.594024 tig0019129:+114858 Msa1370500:three_prime_UTR
GGAAGCTTCTGAGGTGAGTG+GGG 0.596647 tig0019129:+113243 Msa1370500:CDS
ACATGACTTGTATGTGCCCT+CGG 0.597069 tig0019129:-114757 Msa1370510:CDS
TTCATGAACATGCGCCAAGT+GGG 0.599014 tig0019129:-114970 Msa1370510:CDS
CGATGTTGGTGGGGTGAGTG+AGG 0.602177 tig0019129:-109286 None:intergenic
GATAGATTGCAGCACTCCGT+AGG 0.607576 tig0019129:-114271 None:intergenic
TGGTTGCATATTGACATGGC+TGG 0.610791 tig0019129:+113729 Msa1370500:CDS
AGGGACCAATGTGCTTCCTA+CGG 0.611347 tig0019129:+114255 Msa1370500:three_prime_UTR
TAGGGGATTCGATGTTGGTG+GGG 0.614139 tig0019129:-109295 None:intergenic
CTATCATCTCGAGAAGCAAG+AGG 0.615655 tig0019129:+114433 Msa1370500:three_prime_UTR
TTAAAGGACTTGGATCAAAG+AGG 0.618325 tig0019129:+109695 Msa1370500:CDS
CATAATACTCTTTACCTAGG+AGG 0.619598 tig0019129:-114387 None:intergenic
CTTCATGAACATGCGCCAAG+TGG 0.622212 tig0019129:-114971 None:intergenic
ATTAGATGCTGATCAGTGCA+AGG 0.622870 tig0019129:+110565 Msa1370500:CDS
TGACTAACCTCCACCCCAAG+AGG 0.623663 tig0019129:-111413 None:intergenic
TTGATGGTGGATGGAAAAGG+TGG 0.625881 tig0019129:+113949 Msa1370500:three_prime_UTR
ATGGAAAAGGTGGTAAGATG+AGG 0.626874 tig0019129:+113959 Msa1370500:three_prime_UTR
GGTGAAAACATCACTATAGG+TGG 0.627383 tig0019129:-110534 None:intergenic
TCAAATCAAACCTCTTGGGG+TGG 0.629691 tig0019129:+111403 Msa1370500:CDS
AAGAGACACTTCGAAGAACG+TGG 0.631094 tig0019129:+114577 Msa1370500:three_prime_UTR
CGCTTCTTGTCATTCCACAC+AGG 0.634105 tig0019129:-113753 None:intergenic
ACTGAGAGTTGAATCTCTCG+AGG 0.638664 tig0019129:+115095 Msa1370500:three_prime_UTR
TGCTTTGAGAGTGACACCGA+GGG 0.642437 tig0019129:+114741 Msa1370500:three_prime_UTR
AAACACTACTGGAGCTACGT+AGG 0.643784 tig0019129:-114087 None:intergenic
CTTACTTACAAACCTCCAAG+TGG 0.646870 tig0019129:+110653 Msa1370500:CDS
ACTGTATAAGGGTCTTGGTG+AGG 0.650936 tig0019129:+109759 Msa1370500:CDS
AAGTCCTTTAATCCTAACAA+CGG 0.658258 tig0019129:-109683 None:intergenic
TGATTTGGCAACCTTAACTG+GGG 0.658915 tig0019129:+112903 Msa1370500:CDS
TGCTGAGGGAAGACTCACAC+TGG 0.659444 tig0019129:+112308 Msa1370500:CDS
AATTTGATGGTGGATGGAAA+AGG 0.660741 tig0019129:+113946 Msa1370500:three_prime_UTR
AAAGGAGACATACTAGCAGT+GGG 0.660959 tig0019129:+109520 Msa1370500:CDS
AGTGCAAGGAATTGAAAATG+GGG 0.671375 tig0019129:+110579 Msa1370500:CDS
TTGACATGGCTGGTCCTGTG+TGG 0.671937 tig0019129:+113739 Msa1370500:CDS
TCAATGGTTGCATATTGACA+TGG 0.673345 tig0019129:+113725 Msa1370500:CDS
GGTGAACAACACTGATGCTG+AGG 0.673515 tig0019129:+112293 Msa1370500:intron
GTGAACAACACTGATGCTGA+GGG 0.676137 tig0019129:+112294 Msa1370500:CDS
CTCATGAAATTTGATATGGG+TGG 0.679380 tig0019129:+111344 Msa1370500:CDS
GAGAGTTGAATCTCTCGAGG+AGG 0.683067 tig0019129:+115098 Msa1370500:three_prime_UTR
GTTGATGTGACTGAATGGAA+AGG 0.683142 tig0019129:+109502 Msa1370500:CDS
GGAATCAATGAAATCAGGAG+TGG 0.685410 tig0019129:+113303 Msa1370500:CDS
GCACTCCGTAGGAAGCACAT+TGG 0.687018 tig0019129:-114260 None:intergenic
AACACTGGTGGTAGACCAGG+TGG 0.694030 tig0019129:+113337 Msa1370500:CDS
TAAGTAAGATGGATAAAACG+AGG 0.697138 tig0019129:-110638 None:intergenic
GCTTGTGAGAATATGATCAG+TGG 0.702653 tig0019129:+111727 Msa1370500:CDS
GCAGCAGTGATAGAACCACC+TGG 0.709003 tig0019129:-113352 None:intergenic
GTAAGATGGATAAAACGAGG+AGG 0.715083 tig0019129:-110635 None:intergenic
AAAACGAGGAGGATTTGCCG+AGG 0.716110 tig0019129:-110624 None:intergenic
GTGGCTGATATGGTAAACAC+TGG 0.719705 tig0019129:+113322 Msa1370500:CDS
TTGCTTTGAGAGTGACACCG+AGG 0.729272 tig0019129:+114740 Msa1370500:three_prime_UTR
TGAGTGGGGAGAAACTATGG+AGG 0.741229 tig0019129:+113257 Msa1370500:CDS
GCTGATATGGTAAACACTGG+TGG 0.751322 tig0019129:+113325 Msa1370500:CDS
ACTCTCCCACACCCTAATGG+CGG 0.754360 tig0019129:+109115 Msa1370500:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAATAAATATGAAAT+GGG - tig0019129:111214-111233 None:intergenic 10.0%
!! ACAAAAAAATAAATATGAAA+TGG - tig0019129:111215-111234 None:intergenic 10.0%
!!! ATTTAATATTTTGATAGATT+TGG + tig0019129:112465-112484 Msa1370500:intron 10.0%
!!! TATTTTAAGAAACTTATTAT+TGG + tig0019129:113598-113617 Msa1370500:intron 10.0%
!!! ATCCTGATTTTAATTTTAAT+TGG + tig0019129:109045-109064 Msa1370500:five_prime_UTR 15.0%
!!! TAATTTTAATTGGCTATTTT+TGG + tig0019129:109055-109074 Msa1370500:five_prime_UTR 15.0%
!! AAAACATTAGTAAATAGTAA+TGG - tig0019129:109985-110004 None:intergenic 15.0%
!!! AAATCAATGTTTCTAAAAAT+GGG - tig0019129:110049-110068 None:intergenic 15.0%
!!! AAAATCAATGTTTCTAAAAA+TGG - tig0019129:110050-110069 None:intergenic 15.0%
!! TGAATTGTAAATAAAAAACA+CGG - tig0019129:110743-110762 None:intergenic 15.0%
!!! TTTATTTTTTTGTTTGATGT+AGG + tig0019129:111222-111241 Msa1370500:intron 15.0%
!! AAAAAAAATCAAATGAGATT+AGG - tig0019129:111561-111580 None:intergenic 15.0%
!! AAATATGTATATATGTCATA+AGG + tig0019129:111922-111941 Msa1370500:intron 15.0%
!! AAATCTGTTTATGATTTATA+GGG - tig0019129:112416-112435 None:intergenic 15.0%
!! TATAAATCATAAACAGATTT+CGG + tig0019129:112416-112435 Msa1370500:intron 15.0%
!! GAAGTTTGTAAATATAAAAA+AGG - tig0019129:112766-112785 None:intergenic 15.0%
!!! CTAAGTTCATATATTATTTT+GGG + tig0019129:113086-113105 Msa1370500:intron 15.0%
!!! TAAGTTCATATATTATTTTG+GGG + tig0019129:113087-113106 Msa1370500:intron 15.0%
!!! TGAAAGATATATTATTTTGA+AGG + tig0019129:113181-113200 Msa1370500:intron 15.0%
!!! TGAAATTTTTACTATAGATT+AGG - tig0019129:113565-113584 None:intergenic 15.0%
!!! ATATACTAGTTTCTTAAATA+TGG + tig0019129:113627-113646 Msa1370500:intron 15.0%
!! ATAAGATAAAAATCATGTTA+TGG + tig0019129:113887-113906 Msa1370500:three_prime_UTR 15.0%
!! TTTATGAATAAGTAATTTGA+TGG + tig0019129:113933-113952 Msa1370500:three_prime_UTR 15.0%
!! AGCCAATTAAAATTAAAATC+AGG - tig0019129:109050-109069 None:intergenic 20.0%
!! TGAAACAAAAAAAGAAACAT+GGG - tig0019129:109349-109368 None:intergenic 20.0%
!! ATGAAACAAAAAAAGAAACA+TGG - tig0019129:109350-109369 None:intergenic 20.0%
!!! AATCAATGTTTCTAAAAATG+GGG - tig0019129:110048-110067 None:intergenic 20.0%
!! TATTTACAATTCATAAGACA+TGG + tig0019129:110750-110769 Msa1370500:intron 20.0%
!!! GTTGATAAATCTTTAATATG+AGG + tig0019129:110867-110886 Msa1370500:intron 20.0%
!! ACATGAAATTGAAAAATTGA+AGG - tig0019129:111453-111472 None:intergenic 20.0%
!! GTACAATAGGTTAAATTTAT+TGG - tig0019129:111842-111861 None:intergenic 20.0%
!! TAAATTTAACCTATTGTACA+TGG + tig0019129:111843-111862 Msa1370500:intron 20.0%
!!! GCTTCTTCAAATATTTTATT+TGG + tig0019129:111969-111988 Msa1370500:intron 20.0%
!!! ATTGCGAAACTTTTTTAAAA+TGG - tig0019129:112028-112047 None:intergenic 20.0%
!! AATAATCATTTATGATGCTT+GGG + tig0019129:112045-112064 Msa1370500:intron 20.0%
!! AAATCTATTGTAGTTATACT+TGG + tig0019129:112114-112133 Msa1370500:intron 20.0%
!! GTTAATACTTAACAAAATCA+AGG - tig0019129:112224-112243 None:intergenic 20.0%
!!! AACATTTTATATGATGTACT+AGG + tig0019129:112241-112260 Msa1370500:intron 20.0%
!! GAAATCTGTTTATGATTTAT+AGG - tig0019129:112417-112436 None:intergenic 20.0%
!! AAATGTTAAGCAAATGATTT+GGG - tig0019129:112449-112468 None:intergenic 20.0%
!! TAAATGTTAAGCAAATGATT+TGG - tig0019129:112450-112469 None:intergenic 20.0%
!! ATATTCTTAAAGAATGAGAA+TGG - tig0019129:112681-112700 None:intergenic 20.0%
!!! TCATTCTTTAAGAATATCTA+TGG + tig0019129:112684-112703 Msa1370500:intron 20.0%
!! CCAAAATAATATATGAACTT+AGG - tig0019129:113088-113107 None:intergenic 20.0%
!!! CCTAAGTTCATATATTATTT+TGG + tig0019129:113085-113104 Msa1370500:intron 20.0%
!! GAAAAATTCAAACAATAACA+CGG - tig0019129:113418-113437 None:intergenic 20.0%
!!! ATTTTTCTTCTCAATGTAAT+TGG + tig0019129:113431-113450 Msa1370500:intron 20.0%
!! TTTAAGAAACTTATTATTGG+AGG + tig0019129:113601-113620 Msa1370500:intron 20.0%
!! CTGAAATCTTCAAATATTAT+TGG + tig0019129:113844-113863 Msa1370500:three_prime_UTR 20.0%
!!! AAAGAATACTTTGTATTTTC+AGG + tig0019129:114009-114028 Msa1370500:three_prime_UTR 20.0%
!!! AAGAATACTTTGTATTTTCA+GGG + tig0019129:114010-114029 Msa1370500:three_prime_UTR 20.0%
!! TAGTTTCTTACAGAAAAAAA+AGG + tig0019129:114207-114226 Msa1370500:three_prime_UTR 20.0%
!! TAGTTTCAACCATTATAATT+TGG - tig0019129:114604-114623 Msa1370510:intron 20.0%
!!! GTTTTAGTTTAGTTACTTAT+TGG + tig0019129:114994-115013 Msa1370500:three_prime_UTR 20.0%
! TCATTATCAATCGAGAAAAA+CGG + tig0019129:108974-108993 Msa1370500:five_prime_UTR 25.0%
!!! TTTTGAGAAAGCAATAACAA+TGG - tig0019129:109153-109172 None:intergenic 25.0%
! AAGAAGAAAATTAACCTTAG+GGG - tig0019129:109315-109334 None:intergenic 25.0%
! GAAGAAGAAAATTAACCTTA+GGG - tig0019129:109316-109335 None:intergenic 25.0%
! TGAAGAAGAAAATTAACCTT+AGG - tig0019129:109317-109336 None:intergenic 25.0%
!! AATTTTCACAAACACGTTAA+AGG - tig0019129:109453-109472 None:intergenic 25.0%
! AGTGTTTGATGTGTTAAAAT+AGG + tig0019129:109952-109971 Msa1370500:intron 25.0%
! GTGTTTGATGTGTTAAAATA+GGG + tig0019129:109953-109972 Msa1370500:intron 25.0%
!! ATCATCACAAACTTTAGAAA+TGG + tig0019129:110071-110090 Msa1370500:intron 25.0%
!!! GTTTCTTCTGGAATAATTTT+TGG + tig0019129:110327-110346 Msa1370500:CDS 25.0%
!!! TTCTGGAATAATTTTTGGAA+GGG + tig0019129:110332-110351 Msa1370500:CDS 25.0%
!!! ATCAGCATCTAATATTTTAG+CGG - tig0019129:110558-110577 None:intergenic 25.0%
! TGTAAATAAAAAACACGGTT+TGG - tig0019129:110738-110757 None:intergenic 25.0%
! AGACATGGAAAAATTTGAAA+CGG + tig0019129:110765-110784 Msa1370500:intron 25.0%
!!! ATTATCCATGGTTTTGATTA+TGG + tig0019129:110801-110820 Msa1370500:intron 25.0%
!! GTTGTTTCAACTCAAAATTA+AGG + tig0019129:111171-111190 Msa1370500:intron 25.0%
! AACGTAATAAAAAAGCAGTA+AGG - tig0019129:111265-111284 None:intergenic 25.0%
! TGAACTCATGAAATTTGATA+TGG + tig0019129:111340-111359 Msa1370500:CDS 25.0%
! GAACTCATGAAATTTGATAT+GGG + tig0019129:111341-111360 Msa1370500:CDS 25.0%
!! TTTATACAAACCCGTTATTT+TGG - tig0019129:111519-111538 None:intergenic 25.0%
! ATAATAAGAGTTGTTGAGTA+TGG + tig0019129:111588-111607 Msa1370500:intron 25.0%
!!! GGATTTTCATTTTACTTTTC+TGG + tig0019129:111609-111628 Msa1370500:intron 25.0%
!!! TTTTCATTTTACTTTTCTGG+TGG + tig0019129:111612-111631 Msa1370500:intron 25.0%
!!! AATGATTTGTTTGGAATACT+TGG + tig0019129:111649-111668 Msa1370500:intron 25.0%
! TTCAAATGGAAAAACTATTG+AGG + tig0019129:111783-111802 Msa1370500:CDS 25.0%
! CAATAATCATTTATGATGCT+TGG + tig0019129:112044-112063 Msa1370500:intron 25.0%
! ATATGTTTACAGAGTTCATA+GGG - tig0019129:112191-112210 None:intergenic 25.0%
! AGTCAAAATGTGAATTTAGT+TGG - tig0019129:112635-112654 None:intergenic 25.0%
!! TCTTCTTCAGATTATTGATT+TGG + tig0019129:112888-112907 Msa1370500:intron 25.0%
!!! TTATTTTTACCTGCAATTGA+GGG - tig0019129:112949-112968 None:intergenic 25.0%
!!! TTTATTTTTACCTGCAATTG+AGG - tig0019129:112950-112969 None:intergenic 25.0%
! GGAATATGGTAATAAAAAAG+AGG - tig0019129:113005-113024 None:intergenic 25.0%
!!! TAGCAAGAAATTTTGGAATA+TGG - tig0019129:113019-113038 None:intergenic 25.0%
!! CTAATTCTAGCAAGAAATTT+TGG - tig0019129:113026-113045 None:intergenic 25.0%
! CAAAATTTCTTGCTAGAATT+AGG + tig0019129:113024-113043 Msa1370500:intron 25.0%
!! AAAACTCTCAATATTTTGCT+TGG + tig0019129:113051-113070 Msa1370500:intron 25.0%
!!! TTTGTAGTTTGTTGATGAAA+AGG + tig0019129:113701-113720 Msa1370500:intron 25.0%
!! AAATCATGTTATGGTTTTTC+TGG + tig0019129:113896-113915 Msa1370500:three_prime_UTR 25.0%
!!! TTATGGTTTTTCTGGTTATT+TGG + tig0019129:113904-113923 Msa1370500:three_prime_UTR 25.0%
!!! TATGGTTTTTCTGGTTATTT+GGG + tig0019129:113905-113924 Msa1370500:three_prime_UTR 25.0%
! ATGAATAAGTAATTTGATGG+TGG + tig0019129:113936-113955 Msa1370500:three_prime_UTR 25.0%
!! TTTTTGTATTGAATACACTG+TGG - tig0019129:113991-114010 None:intergenic 25.0%
! TAGATGCTTAACTGAATTAT+TGG - tig0019129:114040-114059 None:intergenic 25.0%
!!! TTGTTTCTTTTTCTTTTGGA+GGG + tig0019129:114236-114255 Msa1370500:three_prime_UTR 25.0%
!! AAAGCAAGATGATTTTACAT+CGG - tig0019129:114315-114334 None:intergenic 25.0%
! TGTAAAATCATCTTGCTTTA+AGG + tig0019129:114316-114335 Msa1370500:three_prime_UTR 25.0%
!! TAATTATCATCCTTTGTTTC+TGG - tig0019129:114871-114890 Msa1370510:intron 25.0%
! TCCAATTCCAATCATTATTT+AGG + tig0019129:115055-115074 Msa1370500:three_prime_UTR 25.0%
! TCCTAAATAATGATTGGAAT+TGG - tig0019129:115059-115078 None:intergenic 25.0%
! ATCTTGTCCTAAATAATGAT+TGG - tig0019129:115065-115084 None:intergenic 25.0%
TTTGGATGAATAAGATGTGA+TGG + tig0019129:109073-109092 Msa1370500:five_prime_UTR 30.0%
! AAAGATCTCTTTTTCTGCTA+CGG + tig0019129:109477-109496 Msa1370500:intron 30.0%
!! GAACAAGATTGATTTGAAGT+TGG + tig0019129:109600-109619 Msa1370500:CDS 30.0%
!! AAGATTGATTTGAAGTTGGA+TGG + tig0019129:109604-109623 Msa1370500:CDS 30.0%
AAGTCCTTTAATCCTAACAA+CGG - tig0019129:109686-109705 None:intergenic 30.0%
ATATACACACAAGACAAGTA+GGG - tig0019129:110104-110123 None:intergenic 30.0%
GTTAGATCCATTGACATTAT+TGG + tig0019129:110255-110274 Msa1370500:CDS 30.0%
!!! CTTCTGGAATAATTTTTGGA+AGG + tig0019129:110331-110350 Msa1370500:CDS 30.0%
! TCTAAAATCTGATCTGTACT+TGG + tig0019129:110461-110480 Msa1370500:intron 30.0%
TAAGTAAGATGGATAAAACG+AGG - tig0019129:110641-110660 None:intergenic 30.0%
!! GAAAAGGTTTGACTTTTGAT+AGG + tig0019129:110705-110724 Msa1370500:CDS 30.0%
! GACATGGAAAAATTTGAAAC+GGG + tig0019129:110766-110785 Msa1370500:intron 30.0%
TCAAAACCATGGATAATACA+GGG - tig0019129:110798-110817 None:intergenic 30.0%
ATCAAAACCATGGATAATAC+AGG - tig0019129:110799-110818 None:intergenic 30.0%
AATAATTTGATCCATGTAGC+CGG - tig0019129:110964-110983 None:intergenic 30.0%
TACAATGGCATACTAAGTAT+TGG + tig0019129:111135-111154 Msa1370500:intron 30.0%
! AGGTTAGTCACTTAAATCAT+TGG + tig0019129:111426-111445 Msa1370500:intron 30.0%
! TTTCATGTCAAGATTTGCTT+AGG + tig0019129:111465-111484 Msa1370500:intron 30.0%
! TTCATGTCAAGATTTGCTTA+GGG + tig0019129:111466-111485 Msa1370500:intron 30.0%
! AAGATTTGCTTAGGGATTAT+TGG + tig0019129:111474-111493 Msa1370500:intron 30.0%
! AGATTTGCTTAGGGATTATT+GGG + tig0019129:111475-111494 Msa1370500:intron 30.0%
ATTATTGGGTGATGTAGTAT+GGG + tig0019129:111489-111508 Msa1370500:intron 30.0%
ATTCCAAACAAATCATTCCA+CGG - tig0019129:111646-111665 None:intergenic 30.0%
AATAAAAACCTTGCATATGC+AGG + tig0019129:111687-111706 Msa1370500:intron 30.0%
! TTGCAATTGAAGAGAAGTTT+TGG + tig0019129:112164-112183 Msa1370500:intron 30.0%
TATGTTTACAGAGTTCATAG+GGG - tig0019129:112190-112209 None:intergenic 30.0%
CATATGTTTACAGAGTTCAT+AGG - tig0019129:112192-112211 None:intergenic 30.0%
ATGTACTAGGAATTTGACAT+TGG + tig0019129:112254-112273 Msa1370500:intron 30.0%
! ATTGGTGTAACTTTTTGTGT+AGG + tig0019129:112272-112291 Msa1370500:intron 30.0%
GATGAAAGAGAATTACTAGT+AGG + tig0019129:112506-112525 Msa1370500:intron 30.0%
! ATATAAGAGTGTACTCAAGA+CGG - tig0019129:112556-112575 None:intergenic 30.0%
!! GGACAAGTTTACTTTTGTTT+CGG + tig0019129:112705-112724 Msa1370500:intron 30.0%
!! CTCATATGTTGTTTGTTTTC+TGG + tig0019129:112785-112804 Msa1370500:intron 30.0%
!!! AGTTTTAGAATACTGCTAAC+TGG + tig0019129:112856-112875 Msa1370500:intron 30.0%
GGAAATAGTAAAGCTAAACT+CGG + tig0019129:113108-113127 Msa1370500:intron 30.0%
GAAATAGTAAAGCTAAACTC+GGG + tig0019129:113109-113128 Msa1370500:intron 30.0%
!! GTTTGACAGTTTTATCTTTC+AGG - tig0019129:113145-113164 None:intergenic 30.0%
! TCTTTTACCAGTTCATCATT+GGG - tig0019129:113217-113236 None:intergenic 30.0%
! TTCTTTTACCAGTTCATCAT+TGG - tig0019129:113218-113237 None:intergenic 30.0%
! TGAACTGGTAAAAGAAGTTT+TGG + tig0019129:113222-113241 Msa1370500:CDS 30.0%
CACAATCACTTGGATAAATA+TGG - tig0019129:113521-113540 None:intergenic 30.0%
! TTGTTGATGAAAAGGTTCAA+TGG + tig0019129:113709-113728 Msa1370500:CDS 30.0%
!!! ATGGTTTTTCTGGTTATTTG+GGG + tig0019129:113906-113925 Msa1370500:three_prime_UTR 30.0%
!! ATAAGTAATTTGATGGTGGA+TGG + tig0019129:113940-113959 Msa1370500:three_prime_UTR 30.0%
!! CAGCTTGTTTCTTTTTCTTT+TGG + tig0019129:114232-114251 Msa1370500:three_prime_UTR 30.0%
!! CTTGTTTCTTTTTCTTTTGG+AGG + tig0019129:114235-114254 Msa1370500:three_prime_UTR 30.0%
CAATCCAAGTATAAGCAAAA+GGG + tig0019129:114348-114367 Msa1370500:three_prime_UTR 30.0%
!!! GAATAGGCACTTTTTTTTAG+TGG - tig0019129:114414-114433 None:intergenic 30.0%
ATGTCAAAGGTTAGTAGTAT+TGG - tig0019129:114491-114510 Msa1370510:CDS 30.0%
TTAGAAGGATCGAAATTCTT+CGG - tig0019129:114549-114568 Msa1370510:intron 30.0%
!! CGATTGATAATGAAAGTTGC+AGG - tig0019129:108967-108986 None:intergenic 35.0%
AATAACAATGGCAGAAGCTA+TGG - tig0019129:109141-109160 None:intergenic 35.0%
!!! ACTTGTTGATTTTCTCGTTG+TGG + tig0019129:109397-109416 Msa1370500:intron 35.0%
!!! CTTGTTGATTTTCTCGTTGT+GGG + tig0019129:109398-109417 Msa1370500:intron 35.0%
AGCAGAAAAAGAGATCTTTC+AGG - tig0019129:109476-109495 None:intergenic 35.0%
TCAACCGTTGTTAGGATTAA+AGG + tig0019129:109679-109698 Msa1370500:CDS 35.0%
GTTGTTAGGATTAAAGGACT+TGG + tig0019129:109685-109704 Msa1370500:CDS 35.0%
TTAAAGGACTTGGATCAAAG+AGG + tig0019129:109695-109714 Msa1370500:CDS 35.0%
!! TCAAAGAGGATTGGTTTGAT+CGG + tig0019129:109709-109728 Msa1370500:CDS 35.0%
TTATACAGTGCAGTAGTTGA+AGG - tig0019129:109748-109767 None:intergenic 35.0%
TTCAACTACTGCACTGTATA+AGG + tig0019129:109747-109766 Msa1370500:CDS 35.0%
TCAACTACTGCACTGTATAA+GGG + tig0019129:109748-109767 Msa1370500:CDS 35.0%
! CACAAACTTTAGAAATGGTG+AGG + tig0019129:110076-110095 Msa1370500:intron 35.0%
CATATACACACAAGACAAGT+AGG - tig0019129:110105-110124 None:intergenic 35.0%
TTATAGCTACATTTGATGCG+TGG + tig0019129:110157-110176 Msa1370500:intron 35.0%
TATAGCTACATTTGATGCGT+GGG + tig0019129:110158-110177 Msa1370500:intron 35.0%
! TCCATTGACATTATTGGTCT+TGG + tig0019129:110261-110280 Msa1370500:CDS 35.0%
TCCAAGACCAATAATGTCAA+TGG - tig0019129:110265-110284 None:intergenic 35.0%
!! TGACATTATTGGTCTTGGAA+CGG + tig0019129:110266-110285 Msa1370500:CDS 35.0%
!! TTGAGCTTTTTCTCCAATTC+AGG - tig0019129:110294-110313 None:intergenic 35.0%
!!! ATCTGTACTTGGTGATGTTT+TGG + tig0019129:110472-110491 Msa1370500:intron 35.0%
TCAGTGCAAGGAATTGAAAA+TGG + tig0019129:110577-110596 Msa1370500:CDS 35.0%
CAGTGCAAGGAATTGAAAAT+GGG + tig0019129:110578-110597 Msa1370500:CDS 35.0%
AGTGCAAGGAATTGAAAATG+GGG + tig0019129:110579-110598 Msa1370500:CDS 35.0%
TTGGAGGTTTGTAAGTAAGA+TGG - tig0019129:110652-110671 None:intergenic 35.0%
TGGTACCATAATCAAAACCA+TGG - tig0019129:110809-110828 None:intergenic 35.0%
TATGGTACCAAAACTATCAG+CGG + tig0019129:110819-110838 Msa1370500:intron 35.0%
! TTCATAACCGCTGATAGTTT+TGG - tig0019129:110829-110848 None:intergenic 35.0%
GGCTACATGGATCAAATTAT+TGG + tig0019129:110963-110982 Msa1370500:intron 35.0%
AAATTATTGGTCCGTCTCAT+AGG + tig0019129:110976-110995 Msa1370500:intron 35.0%
AATTATTGGTCCGTCTCATA+GGG + tig0019129:110977-110996 Msa1370500:intron 35.0%
! GATTCGACAAAGTTTTACGT+TGG + tig0019129:110999-111018 Msa1370500:intron 35.0%
AGTATGCCATTGTAGCAAAT+TGG - tig0019129:111129-111148 None:intergenic 35.0%
ACTCAAAATTAAGGAGTCCA+TGG + tig0019129:111180-111199 Msa1370500:intron 35.0%
TGAAATGGGAAAGAAAACCA+TGG - tig0019129:111200-111219 None:intergenic 35.0%
!!! CGTTTTCTGCTTTTTATCAG+TGG + tig0019129:111281-111300 Msa1370500:intron 35.0%
!!! TTTCTGCTTTTTATCAGTGG+TGG + tig0019129:111284-111303 Msa1370500:intron 35.0%
CTCATGAAATTTGATATGGG+TGG + tig0019129:111344-111363 Msa1370500:CDS 35.0%
TTGGTCAAATCAAACCTCTT+GGG + tig0019129:111399-111418 Msa1370500:CDS 35.0%
GATTATTGGGTGATGTAGTA+TGG + tig0019129:111488-111507 Msa1370500:intron 35.0%
GTATGGGATCTCCAAAATAA+CGG + tig0019129:111505-111524 Msa1370500:intron 35.0%
TATGGGATCTCCAAAATAAC+GGG + tig0019129:111506-111525 Msa1370500:intron 35.0%
!! TTTCCGTGGAATGATTTGTT+TGG + tig0019129:111640-111659 Msa1370500:intron 35.0%
! GATTTGTTTGGAATACTTGG+TGG + tig0019129:111652-111671 Msa1370500:intron 35.0%
AAAATGAACCTGCATATGCA+AGG - tig0019129:111698-111717 None:intergenic 35.0%
ATGGAAAAACTATTGAGGTG+AGG + tig0019129:111788-111807 Msa1370500:intron 35.0%
TGGAAAAACTATTGAGGTGA+GGG + tig0019129:111789-111808 Msa1370500:intron 35.0%
GCATCAATACCATGTACAAT+AGG - tig0019129:111855-111874 None:intergenic 35.0%
ATATATGTCATAAGGTCCAG+TGG + tig0019129:111930-111949 Msa1370500:intron 35.0%
!! TTGTAACCAAGGTGTTGAAA+AGG + tig0019129:112350-112369 Msa1370500:CDS 35.0%
! AGTATACCTTTTCAACACCT+TGG - tig0019129:112359-112378 None:intergenic 35.0%
! GTTAAGCAAATGATTTGGGA+AGG - tig0019129:112445-112464 None:intergenic 35.0%
CTCAAGACGGTGTAAAAAAT+GGG - tig0019129:112543-112562 None:intergenic 35.0%
ACTCAAGACGGTGTAAAAAA+TGG - tig0019129:112544-112563 None:intergenic 35.0%
TACTGGGAATCAATGAAATC+AGG + tig0019129:113298-113317 Msa1370500:CDS 35.0%
TCAATGGTTGCATATTGACA+TGG + tig0019129:113725-113744 Msa1370500:CDS 35.0%
!! AATTTGATGGTGGATGGAAA+AGG + tig0019129:113946-113965 Msa1370500:three_prime_UTR 35.0%
!!! TGCGTTTGTTTGTTTTTGAC+GGG - tig0019129:114120-114139 None:intergenic 35.0%
!!! CTGCGTTTGTTTGTTTTTGA+CGG - tig0019129:114121-114140 None:intergenic 35.0%
CTATCCATTTGAACTACTGA+TGG + tig0019129:114289-114308 Msa1370500:three_prime_UTR 35.0%
! TGCTTATACTTGGATTGGAT+TGG - tig0019129:114345-114364 None:intergenic 35.0%
! CCTTTTGCTTATACTTGGAT+TGG - tig0019129:114350-114369 None:intergenic 35.0%
CCAATCCAAGTATAAGCAAA+AGG + tig0019129:114347-114366 Msa1370500:three_prime_UTR 35.0%
! TGATCCCTTTTGCTTATACT+TGG - tig0019129:114355-114374 None:intergenic 35.0%
CAAAAGTTAAAGTTCCTCCT+AGG + tig0019129:114373-114392 Msa1370500:three_prime_UTR 35.0%
CATAATACTCTTTACCTAGG+AGG - tig0019129:114390-114409 None:intergenic 35.0%
GGTCATAATACTCTTTACCT+AGG - tig0019129:114393-114412 None:intergenic 35.0%
! GTATTGGTGGTTCATCAAAA+TGG - tig0019129:114475-114494 Msa1370510:CDS 35.0%
! TCAAAGGTTAGTAGTATTGG+TGG - tig0019129:114488-114507 Msa1370510:CDS 35.0%
!!! AAATTCTTCGGTTTTTTCCG+GGG - tig0019129:114537-114556 Msa1370510:CDS 35.0%
!!! GAAATTCTTCGGTTTTTTCC+GGG - tig0019129:114538-114557 Msa1370510:CDS 35.0%
!!! CGAAATTCTTCGGTTTTTTC+CGG - tig0019129:114539-114558 Msa1370510:CDS 35.0%
GTCTCTTTGGGTAATTTAGA+AGG - tig0019129:114564-114583 Msa1370510:intron 35.0%
GAACGTGGACCAAATTATAA+TGG + tig0019129:114592-114611 Msa1370500:three_prime_UTR 35.0%
GTTCGTCAAAGAAGACAATT+GGG - tig0019129:114688-114707 Msa1370510:CDS 35.0%
AGTTCGTCAAAGAAGACAAT+TGG - tig0019129:114689-114708 Msa1370510:CDS 35.0%
! GTTCTTTGGAAGATTGATCA+TGG - tig0019129:114818-114837 Msa1370510:CDS 35.0%
TCTTCCAATTCCAGAAACAA+AGG + tig0019129:114858-114877 Msa1370500:three_prime_UTR 35.0%
!! TCATCCTTTGTTTCTGGAAT+TGG - tig0019129:114865-114884 Msa1370510:intron 35.0%
AATCGGGATTTATCTTCTGA+TGG - tig0019129:114938-114957 Msa1370510:CDS 35.0%
ATCAATCGAGAAAAACGGAC+AGG + tig0019129:108979-108998 Msa1370500:five_prime_UTR 40.0%
AGTGAGAAAGAGAGAAGAAG+AGG - tig0019129:109180-109199 None:intergenic 40.0%
GTTGAATGAAAGCTTCGCTT+AGG - tig0019129:109227-109246 None:intergenic 40.0%
GTTGATGTGACTGAATGGAA+AGG + tig0019129:109502-109521 Msa1370500:CDS 40.0%
AAAGGAGACATACTAGCAGT+GGG + tig0019129:109520-109539 Msa1370500:CDS 40.0%
! ATCTGAAGCTTCTTCTGAAG+AGG + tig0019129:109633-109652 Msa1370500:CDS 40.0%
! TCTTCTGAAGAGGATTTCTC+TGG + tig0019129:109643-109662 Msa1370500:CDS 40.0%
GAGGATTTCTCTGGTAAAGT+TGG + tig0019129:109652-109671 Msa1370500:CDS 40.0%
TTGGTCAATCAACCGTTGTT+AGG + tig0019129:109671-109690 Msa1370500:CDS 40.0%
ATTGTTCTTGCCTCTTCTGA+AGG + tig0019129:109826-109845 Msa1370500:CDS 40.0%
TGAAGAAAGTCCTTCAGAAG+AGG - tig0019129:109839-109858 None:intergenic 40.0%
ACTGCTTATGCAATTGCATC+TGG + tig0019129:109874-109893 Msa1370500:CDS 40.0%
ATGTCAATGGATCTAACTGC+TGG - tig0019129:110252-110271 None:intergenic 40.0%
!! GACATTATTGGTCTTGGAAC+GGG + tig0019129:110267-110286 Msa1370500:CDS 40.0%
GAGAAAAAGCTCAAGTATGC+TGG + tig0019129:110300-110319 Msa1370500:CDS 40.0%
TATGCTGGAGATGTTTCTTC+TGG + tig0019129:110315-110334 Msa1370500:CDS 40.0%
!! TTTAAAGTGTCGTACGAACC+TGG - tig0019129:110390-110409 None:intergenic 40.0%
!!! TTGGTGATGTTTTGGTCTCA+GGG + tig0019129:110480-110499 Msa1370500:intron 40.0%
GGTGAAAACATCACTATAGG+TGG - tig0019129:110537-110556 None:intergenic 40.0%
AGCGGTGAAAACATCACTAT+AGG - tig0019129:110540-110559 None:intergenic 40.0%
ATTAGATGCTGATCAGTGCA+AGG + tig0019129:110565-110584 Msa1370500:CDS 40.0%
TTGAAAATGGGGTCCTATCT+AGG + tig0019129:110590-110609 Msa1370500:CDS 40.0%
GTAAGATGGATAAAACGAGG+AGG - tig0019129:110638-110657 None:intergenic 40.0%
CTTACTTACAAACCTCCAAG+TGG + tig0019129:110653-110672 Msa1370500:CDS 40.0%
TTGACCTTTACAGATCCACT+TGG - tig0019129:110671-110690 None:intergenic 40.0%
ATTCCACCCTGTATTATCCA+TGG + tig0019129:110789-110808 Msa1370500:intron 40.0%
AAACCATGGATAATACAGGG+TGG - tig0019129:110795-110814 None:intergenic 40.0%
! CAAGCCTTATCCCACTAAAT+GGG + tig0019129:110937-110956 Msa1370500:intron 40.0%
TTTGTCGAATCCCTATGAGA+CGG - tig0019129:110990-111009 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+GGG - tig0019129:111034-111053 None:intergenic 40.0%
ATGCTTGACAAGGCTAACAT+AGG + tig0019129:111073-111092 Msa1370500:intron 40.0%
!! GCATTGCCAATTTGCTACAA+TGG + tig0019129:111120-111139 Msa1370500:intron 40.0%
ATGAGTTCAATTGAACAGCC+AGG - tig0019129:111329-111348 None:intergenic 40.0%
CTTGGTCAAATCAAACCTCT+TGG + tig0019129:111398-111417 Msa1370500:CDS 40.0%
TGGTCAAATCAAACCTCTTG+GGG + tig0019129:111400-111419 Msa1370500:CDS 40.0%
GCTTGTGAGAATATGATCAG+TGG + tig0019129:111727-111746 Msa1370500:CDS 40.0%
GAGAATATGATCAGTGGAAC+AGG + tig0019129:111733-111752 Msa1370500:CDS 40.0%
GATGTTGTCACAGCTTCAAA+TGG + tig0019129:111769-111788 Msa1370500:CDS 40.0%
TATTGAGGTGAGGGTTTACT+AGG + tig0019129:111798-111817 Msa1370500:intron 40.0%
ACAAATTACATGCTGTCCAC+TGG - tig0019129:111949-111968 None:intergenic 40.0%
CTGGTATATGCTTGTAACCA+AGG + tig0019129:112339-112358 Msa1370500:CDS 40.0%
! GTTTTCACCCAATGATGAAC+TGG + tig0019129:113207-113226 Msa1370500:CDS 40.0%
!!! AGAAGTTTTGGAAGCTTCTG+AGG + tig0019129:113234-113253 Msa1370500:CDS 40.0%
GGAATCAATGAAATCAGGAG+TGG + tig0019129:113303-113322 Msa1370500:CDS 40.0%
ATGTAATTGGACAGCTGTGT+TGG + tig0019129:113444-113463 Msa1370500:intron 40.0%
TGTAATTGGACAGCTGTGTT+GGG + tig0019129:113445-113464 Msa1370500:intron 40.0%
CAGATGTTATTACCACTCCA+CGG - tig0019129:113473-113492 None:intergenic 40.0%
! TAGGACAGTTCAAGTTCCAA+TGG - tig0019129:113546-113565 None:intergenic 40.0%
ATGGAAAAGGTGGTAAGATG+AGG + tig0019129:113959-113978 Msa1370500:three_prime_UTR 40.0%
! GCAGTGTCTTCTTTTGCAAA+GGG + tig0019129:114137-114156 Msa1370500:three_prime_UTR 40.0%
! CAGTGTCTTCTTTTGCAAAG+GGG + tig0019129:114138-114157 Msa1370500:three_prime_UTR 40.0%
! AGTGTCTTCTTTTGCAAAGG+GGG + tig0019129:114139-114158 Msa1370500:three_prime_UTR 40.0%
GCTTCTCGAGATGATAGAAT+AGG - tig0019129:114430-114449 None:intergenic 40.0%
! GTTCTTCGAAGTGTCTCTTT+GGG - tig0019129:114576-114595 Msa1370510:intron 40.0%
CAAGCATAGACCATAGAACT+TGG + tig0019129:114662-114681 Msa1370500:three_prime_UTR 40.0%
ATATCCATATGCTCAAGTGC+TGG - tig0019129:114716-114735 Msa1370510:CDS 40.0%
! CTCGTATATGTGCTGTTCTT+TGG - tig0019129:114832-114851 Msa1370510:CDS 40.0%
CAGAAGATAAATCCCGATTC+TGG + tig0019129:114939-114958 Msa1370500:three_prime_UTR 40.0%
TGGGAATGATATCCAGAATC+GGG - tig0019129:114954-114973 Msa1370510:CDS 40.0%
GTGGGAATGATATCCAGAAT+CGG - tig0019129:114955-114974 Msa1370510:CDS 40.0%
TTCTGGATATCATTCCCACT+TGG + tig0019129:114956-114975 Msa1370500:three_prime_UTR 40.0%
!! GGTAGTGCTGTTTACACTTG+AGG + tig0019129:109000-109019 Msa1370500:five_prime_UTR 45.0%
TTAGGGGATTCGATGTTGGT+GGG - tig0019129:109299-109318 None:intergenic 45.0%
AACCTTAGGGGATTCGATGT+TGG - tig0019129:109303-109322 None:intergenic 45.0%
CGGATGTTGATGTGACTGAA+TGG + tig0019129:109497-109516 Msa1370500:CDS 45.0%
GAAAGGAGACATACTAGCAG+TGG + tig0019129:109519-109538 Msa1370500:CDS 45.0%
GGACTTGGATCAAAGAGGAT+TGG + tig0019129:109700-109719 Msa1370500:CDS 45.0%
!! AGGATTGGTTTGATCGGTCT+TGG + tig0019129:109715-109734 Msa1370500:CDS 45.0%
ACTGCACTGTATAAGGGTCT+TGG + tig0019129:109754-109773 Msa1370500:CDS 45.0%
ACTGTATAAGGGTCTTGGTG+AGG + tig0019129:109759-109778 Msa1370500:CDS 45.0%
!!! CTTGGTGATGTTTTGGTCTC+AGG + tig0019129:110479-110498 Msa1370500:intron 45.0%
!!! TGGTGATGTTTTGGTCTCAG+GGG + tig0019129:110481-110500 Msa1370500:intron 45.0%
ACCTCCAAGTGGATCTGTAA+AGG + tig0019129:110664-110683 Msa1370500:CDS 45.0%
ACCTTTACAGATCCACTTGG+AGG - tig0019129:110668-110687 None:intergenic 45.0%
TGGATCTGTAAAGGTCAAGC+TGG + tig0019129:110673-110692 Msa1370500:CDS 45.0%
! TGTAAAGGTCAAGCTGGCTT+TGG + tig0019129:110679-110698 Msa1370500:CDS 45.0%
!! AAGCTGGCTTTGGTTGGAAA+AGG + tig0019129:110689-110708 Msa1370500:CDS 45.0%
CCATTTAGTGGGATAAGGCT+TGG - tig0019129:110939-110958 None:intergenic 45.0%
! CCAAGCCTTATCCCACTAAA+TGG + tig0019129:110936-110955 Msa1370500:intron 45.0%
CTTATCCCACTAAATGGGTC+CGG + tig0019129:110942-110961 Msa1370500:intron 45.0%
!! AAGTTTTACGTTGGCTGTCG+AGG + tig0019129:111008-111027 Msa1370500:intron 45.0%
GTAAAAGGAGAGGGTTGTGT+TGG - tig0019129:111035-111054 None:intergenic 45.0%
TACAACATCAAGACTGGACC+TGG + tig0019129:111308-111327 Msa1370500:CDS 45.0%
! TTTTGCAGCGCCTAAAACTG+CGG - tig0019129:111375-111394 None:intergenic 45.0%
TCAAATCAAACCTCTTGGGG+TGG + tig0019129:111403-111422 Msa1370500:CDS 45.0%
TGATCAGTGGAACAGGTATG+AGG + tig0019129:111740-111759 Msa1370500:CDS 45.0%
GTGAACAACACTGATGCTGA+GGG + tig0019129:112294-112313 Msa1370500:CDS 45.0%
! AGCACTTGCTAGGCAAATCT+TGG - tig0019129:112735-112754 None:intergenic 45.0%
TGCCAATAGAGGAAAGCTAC+TGG + tig0019129:113281-113300 Msa1370500:CDS 45.0%
GCCAATAGAGGAAAGCTACT+GGG + tig0019129:113282-113301 Msa1370500:CDS 45.0%
TCCCAGTAGCTTTCCTCTAT+TGG - tig0019129:113286-113305 None:intergenic 45.0%
GAAATCAGGAGTGGCTGATA+TGG + tig0019129:113312-113331 Msa1370500:CDS 45.0%
GTGGCTGATATGGTAAACAC+TGG + tig0019129:113322-113341 Msa1370500:CDS 45.0%
GCTGATATGGTAAACACTGG+TGG + tig0019129:113325-113344 Msa1370500:CDS 45.0%
! TGCTGCTCTTTTCCTGAAAC+AGG + tig0019129:113369-113388 Msa1370500:CDS 45.0%
ATTAAGCACGCACCTGTTTC+AGG - tig0019129:113384-113403 None:intergenic 45.0%
TCCAAGTGATTGTGTGCCAT+TGG + tig0019129:113527-113546 Msa1370500:intron 45.0%
TCCAATGGCACACAATCACT+TGG - tig0019129:113531-113550 None:intergenic 45.0%
TGGTTGCATATTGACATGGC+TGG + tig0019129:113729-113748 Msa1370500:CDS 45.0%
ATTTGGCGTTGCTACTCTAG+TGG + tig0019129:113788-113807 Msa1370500:CDS 45.0%
CGTTGCTACTCTAGTGGAAT+GGG + tig0019129:113794-113813 Msa1370500:CDS 45.0%
!! TTGATGGTGGATGGAAAAGG+TGG + tig0019129:113949-113968 Msa1370500:three_prime_UTR 45.0%
AAACACTACTGGAGCTACGT+AGG - tig0019129:114090-114109 None:intergenic 45.0%
CGGGAAGAAGAAAACACTAC+TGG - tig0019129:114101-114120 None:intergenic 45.0%
! CGCAGTGTCTTCTTTTGCAA+AGG + tig0019129:114136-114155 Msa1370500:three_prime_UTR 45.0%
TCGGCCATCAGTAGTTCAAA+TGG - tig0019129:114296-114315 None:intergenic 45.0%
CTATCATCTCGAGAAGCAAG+AGG + tig0019129:114433-114452 Msa1370500:three_prime_UTR 45.0%
CGACATTCAGCTCATGTCAA+AGG - tig0019129:114504-114523 Msa1370510:CDS 45.0%
AATGTCGAGATCAGTTTCCC+CGG + tig0019129:114517-114536 Msa1370500:three_prime_UTR 45.0%
! CGTTCTTCGAAGTGTCTCTT+TGG - tig0019129:114577-114596 Msa1370510:intron 45.0%
AAGAGACACTTCGAAGAACG+TGG + tig0019129:114577-114596 Msa1370500:three_prime_UTR 45.0%
TCTATGCTTGCATGCTTGGT+TGG - tig0019129:114652-114671 Msa1370510:intron 45.0%
ATGGTCTATGCTTGCATGCT+TGG - tig0019129:114656-114675 Msa1370510:intron 45.0%
GACAATTGGGCCAAGTTCTA+TGG - tig0019129:114675-114694 Msa1370510:CDS 45.0%
GATTCCAGCACTTGAGCATA+TGG + tig0019129:114709-114728 Msa1370500:three_prime_UTR 45.0%
! ACATGACTTGTATGTGCCCT+CGG - tig0019129:114760-114779 Msa1370510:CDS 45.0%
CAAATGTTGTTCGCGCTCAT+AGG - tig0019129:114784-114803 Msa1370510:CDS 45.0%
TTCATGAACATGCGCCAAGT+GGG - tig0019129:114973-114992 None:intergenic 45.0%
ACTGAGAGTTGAATCTCTCG+AGG + tig0019129:115095-115114 Msa1370500:three_prime_UTR 45.0%
!! TAAAAAAAAAAAAAAACAAA+TGG - tig0019129:114169-114188 None:intergenic 5.0%
TAGACTCTCCCACACCCTAA+TGG + tig0019129:109112-109131 Msa1370500:exon 50.0%
AGAAGCTATGGCCGCCATTA+GGG - tig0019129:109129-109148 None:intergenic 50.0%
TAGGGGATTCGATGTTGGTG+GGG - tig0019129:109298-109317 None:intergenic 50.0%
CTTAGGGGATTCGATGTTGG+TGG - tig0019129:109300-109319 None:intergenic 50.0%
CACCAACATCGAATCCCCTA+AGG + tig0019129:109298-109317 Msa1370500:CDS 50.0%
CGTGGGCTTGAATTGTGCTA+GGG + tig0019129:110175-110194 Msa1370500:intron 50.0%
GTGGGCTTGAATTGTGCTAG+GGG + tig0019129:110176-110195 Msa1370500:intron 50.0%
TCTTGGAACGGGACCTGAAT+TGG + tig0019129:110278-110297 Msa1370500:CDS 50.0%
CCTGGTGTGAGAACATTAGC+AGG - tig0019129:110372-110391 None:intergenic 50.0%
CCTGCTAATGTTCTCACACC+AGG + tig0019129:110369-110388 Msa1370500:CDS 50.0%
!!! TGTTTTGGTCTCAGGGGTGT+TGG + tig0019129:110487-110506 Msa1370500:intron 50.0%
!! GTTGGCAGAAGAGGCATCTA+AGG + tig0019129:110505-110524 Msa1370500:CDS 50.0%
AAAACGAGGAGGATTTGCCG+AGG - tig0019129:110627-110646 None:intergenic 50.0%
!! AAGGTCAAGCTGGCTTTGGT+TGG + tig0019129:110683-110702 Msa1370500:CDS 50.0%
CGGACCCATTTAGTGGGATA+AGG - tig0019129:110944-110963 None:intergenic 50.0%
TGTAGCCGGACCCATTTAGT+GGG - tig0019129:110950-110969 None:intergenic 50.0%
ATGTAGCCGGACCCATTTAG+TGG - tig0019129:110951-110970 None:intergenic 50.0%
ACTAAATGGGTCCGGCTACA+TGG + tig0019129:110950-110969 Msa1370500:intron 50.0%
CAAGGCTGGGTAAAAGGAGA+GGG - tig0019129:111044-111063 None:intergenic 50.0%
! CTCTCCTTTTACCCAGCCTT+GGG + tig0019129:111043-111062 Msa1370500:intron 50.0%
GGTGGCTACAACATCAAGAC+TGG + tig0019129:111302-111321 Msa1370500:CDS 50.0%
!! TTAGGCGCTGCAAAAGCACT+TGG + tig0019129:111380-111399 Msa1370500:CDS 50.0%
AATCAAACCTCTTGGGGTGG+AGG + tig0019129:111406-111425 Msa1370500:CDS 50.0%
GAAGCTGTGACAACATCTCC+AGG - tig0019129:111766-111785 None:intergenic 50.0%
GGTGAACAACACTGATGCTG+AGG + tig0019129:112293-112312 Msa1370500:intron 50.0%
!! TGCCTAGCAAGTGCTGACTT+TGG + tig0019129:112740-112759 Msa1370500:intron 50.0%
GGGCATGTGTAGTTGCTCTT+GGG + tig0019129:112923-112942 Msa1370500:CDS 50.0%
AAGCTAAACTCGGGAGAGAC+TGG + tig0019129:113118-113137 Msa1370500:intron 50.0%
!! TTGGAAGCTTCTGAGGTGAG+TGG + tig0019129:113241-113260 Msa1370500:CDS 50.0%
!! TGGAAGCTTCTGAGGTGAGT+GGG + tig0019129:113242-113261 Msa1370500:CDS 50.0%
AGGTGAGTGGGGAGAAACTA+TGG + tig0019129:113254-113273 Msa1370500:CDS 50.0%
TGAGTGGGGAGAAACTATGG+AGG + tig0019129:113257-113276 Msa1370500:CDS 50.0%
ACTATGGAGGCTGCCAATAG+AGG + tig0019129:113270-113289 Msa1370500:CDS 50.0%
GTAAACACTGGTGGTAGACC+AGG + tig0019129:113334-113353 Msa1370500:CDS 50.0%
CGCTTCTTGTCATTCCACAC+AGG - tig0019129:113756-113775 None:intergenic 50.0%
GCGTTGCTACTCTAGTGGAA+TGG + tig0019129:113793-113812 Msa1370500:CDS 50.0%
! GTCTTCTTTTGCAAAGGGGG+TGG + tig0019129:114142-114161 Msa1370500:three_prime_UTR 50.0%
AGGGACCAATGTGCTTCCTA+CGG + tig0019129:114255-114274 Msa1370500:three_prime_UTR 50.0%
GATAGATTGCAGCACTCCGT+AGG - tig0019129:114274-114293 None:intergenic 50.0%
CTTGCATGCTTGGTTGGAGT+GGG - tig0019129:114646-114665 Msa1370510:intron 50.0%
!! TTGCTTTGAGAGTGACACCG+AGG + tig0019129:114740-114759 Msa1370500:three_prime_UTR 50.0%
!! TGCTTTGAGAGTGACACCGA+GGG + tig0019129:114741-114760 Msa1370500:three_prime_UTR 50.0%
CTTCATGAACATGCGCCAAG+TGG - tig0019129:114974-114993 None:intergenic 50.0%
CACTTGGCGCATGTTCATGA+AGG + tig0019129:114972-114991 Msa1370500:three_prime_UTR 50.0%
GAGAGTTGAATCTCTCGAGG+AGG + tig0019129:115098-115117 Msa1370500:three_prime_UTR 50.0%
ACTCTCCCACACCCTAATGG+CGG + tig0019129:109115-109134 Msa1370500:exon 55.0%
TATGGCCGCCATTAGGGTGT+GGG - tig0019129:109123-109142 None:intergenic 55.0%
CAGAAGCTATGGCCGCCATT+AGG - tig0019129:109130-109149 None:intergenic 55.0%
CAGTCACGTGACACCACTCT+CGG + tig0019129:109263-109282 Msa1370500:CDS 55.0%
GCGTGGGCTTGAATTGTGCT+AGG + tig0019129:110174-110193 Msa1370500:intron 55.0%
AATTGTGCTAGGGGCTGTGC+TGG + tig0019129:110185-110204 Msa1370500:intron 55.0%
ATTGTGCTAGGGGCTGTGCT+GGG + tig0019129:110186-110205 Msa1370500:intron 55.0%
GGCTGCAGCAACACCTAGAT+AGG - tig0019129:110606-110625 None:intergenic 55.0%
!! TCTAGGTGTTGCTGCAGCCT+CGG + tig0019129:110607-110626 Msa1370500:CDS 55.0%
CCAAGGCTGGGTAAAAGGAG+AGG - tig0019129:111045-111064 None:intergenic 55.0%
! CCTCTCCTTTTACCCAGCCT+TGG + tig0019129:111042-111061 Msa1370500:intron 55.0%
CAGTCCCAAGGCTGGGTAAA+AGG - tig0019129:111050-111069 None:intergenic 55.0%
! CTTTTACCCAGCCTTGGGAC+TGG + tig0019129:111048-111067 Msa1370500:intron 55.0%
GTCAAGCATAGCCAGTCCCA+AGG - tig0019129:111062-111081 None:intergenic 55.0%
!! GGGACTGGCTATGCTTGACA+AGG + tig0019129:111063-111082 Msa1370500:intron 55.0%
! GGTGGTTCAGCCGCAGTTTT+AGG + tig0019129:111362-111381 Msa1370500:CDS 55.0%
TGACTAACCTCCACCCCAAG+AGG - tig0019129:111416-111435 None:intergenic 55.0%
!!! TTCTGGTGGCTGCTTTTCCG+TGG + tig0019129:111626-111645 Msa1370500:intron 55.0%
AGTGGAACAGGTATGAGGCC+TGG + tig0019129:111745-111764 Msa1370500:CDS 55.0%
TGCTGAGGGAAGACTCACAC+TGG + tig0019129:112308-112327 Msa1370500:CDS 55.0%
ACTCACACTGGCAGATGCTC+TGG + tig0019129:112320-112339 Msa1370500:CDS 55.0%
GGCCAAAGTCAGCACTTGCT+AGG - tig0019129:112745-112764 None:intergenic 55.0%
GGGGCATGTGTAGTTGCTCT+TGG + tig0019129:112922-112941 Msa1370500:CDS 55.0%
!! GGAAGCTTCTGAGGTGAGTG+GGG + tig0019129:113243-113262 Msa1370500:CDS 55.0%
AACACTGGTGGTAGACCAGG+TGG + tig0019129:113337-113356 Msa1370500:CDS 55.0%
GCAGCAGTGATAGAACCACC+TGG - tig0019129:113355-113374 None:intergenic 55.0%
! TTGACATGGCTGGTCCTGTG+TGG + tig0019129:113739-113758 Msa1370500:CDS 55.0%
AAGCGCTCAGCGACAGGATT+TGG + tig0019129:113771-113790 Msa1370500:CDS 55.0%
! GCACTCCGTAGGAAGCACAT+TGG - tig0019129:114263-114282 None:intergenic 55.0%
GCTTGCATGCTTGGTTGGAG+TGG - tig0019129:114647-114666 Msa1370510:intron 55.0%
CTATGGCCGCCATTAGGGTG+TGG - tig0019129:109124-109143 None:intergenic 60.0%
! CGATGTTGGTGGGGTGAGTG+AGG - tig0019129:109289-109308 None:intergenic 60.0%
CGCAGCTGCTAAGTCTGCTC+AGG + tig0019129:109789-109808 Msa1370500:CDS 60.0%
!! CTCAGGGGTGTTGGCAGAAG+AGG + tig0019129:110496-110515 Msa1370500:intron 60.0%
GCATAGCCAGTCCCAAGGCT+GGG - tig0019129:111057-111076 None:intergenic 60.0%
AGCATAGCCAGTCCCAAGGC+TGG - tig0019129:111058-111077 None:intergenic 60.0%
GCTCTTGGGCCCTCAATTGC+AGG + tig0019129:112937-112956 Msa1370500:CDS 60.0%
! GACAGCTGTGTTGGGTACCG+TGG + tig0019129:113453-113472 Msa1370500:intron 60.0%
! CTGTGTTGGGTACCGTGGAG+TGG + tig0019129:113458-113477 Msa1370500:intron 60.0%
!! GACAAGAAGCGCTCAGCGAC+AGG + tig0019129:113765-113784 Msa1370500:CDS 60.0%
GGGGTGAGTGAGGCCGAGAG+TGG - tig0019129:109279-109298 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019129 gene 108920 115129 108920 ID=Msa1370500;Name=Msa1370500
tig0019129 mRNA 108920 115129 108920 ID=Msa1370500-mRNA-1;Parent=Msa1370500;Name=Msa1370500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=211|1|1|1|1|1|10|1293|567
tig0019129 exon 108920 109319 108920 ID=Msa1370500-mRNA-1:exon:1664;Parent=Msa1370500-mRNA-1
tig0019129 exon 109481 109895 109481 ID=Msa1370500-mRNA-1:exon:1665;Parent=Msa1370500-mRNA-1
tig0019129 exon 110196 110390 110196 ID=Msa1370500-mRNA-1:exon:1666;Parent=Msa1370500-mRNA-1
tig0019129 exon 110501 110726 110501 ID=Msa1370500-mRNA-1:exon:1667;Parent=Msa1370500-mRNA-1
tig0019129 exon 111301 111427 111301 ID=Msa1370500-mRNA-1:exon:1668;Parent=Msa1370500-mRNA-1
tig0019129 exon 111709 111804 111709 ID=Msa1370500-mRNA-1:exon:1669;Parent=Msa1370500-mRNA-1
tig0019129 exon 112294 112371 112294 ID=Msa1370500-mRNA-1:exon:1670;Parent=Msa1370500-mRNA-1
tig0019129 exon 112898 112958 112898 ID=Msa1370500-mRNA-1:exon:1671;Parent=Msa1370500-mRNA-1
tig0019129 exon 113203 113390 113203 ID=Msa1370500-mRNA-1:exon:1672;Parent=Msa1370500-mRNA-1
tig0019129 exon 113708 115129 113708 ID=Msa1370500-mRNA-1:exon:1673;Parent=Msa1370500-mRNA-1
tig0019129 five_prime_UTR 108920 109130 108920 ID=Msa1370500-mRNA-1:five_prime_utr;Parent=Msa1370500-mRNA-1
tig0019129 CDS 109131 109319 109131 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 109481 109895 109481 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 110196 110390 110196 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 110501 110726 110501 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 111301 111427 111301 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 111709 111804 111709 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 112294 112371 112294 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 112898 112958 112898 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 113203 113390 113203 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 CDS 113708 113836 113708 ID=Msa1370500-mRNA-1:cds;Parent=Msa1370500-mRNA-1
tig0019129 three_prime_UTR 113837 115129 113837 ID=Msa1370500-mRNA-1:three_prime_utr;Parent=Msa1370500-mRNA-1
Gene Sequence

>Msa1370500

ATGGCGGCCATAGCTTCTGCCATTGTTATTGCTTTCTCAAAATCTTCCTCTTCTTCTCTCTTTCTCACTTCGCGTATTCGCTTTGCTTCATTTCCTAAGCGAAGCTTTCATTCAACGACGAAGCTCATGTCTCAGTCACGTGACACCACTCTCGGCCTCACTCACCCCACCAACATCGAATCCCCTAAGATCTCTTTTTCTGCTACGGATGTTGATGTGACTGAATGGAAAGGAGACATACTAGCAGTGGGTGTTACTGAGAAAGATTTAACAAGAGATGCTAAATCGAGATTCGAGAATTCGATTTTGAACAAGATTGATTTGAAGTTGGATGGTTTGTTATCTGAAGCTTCTTCTGAAGAGGATTTCTCTGGTAAAGTTGGTCAATCAACCGTTGTTAGGATTAAAGGACTTGGATCAAAGAGGATTGGTTTGATCGGTCTTGGTCAGTCACCTTCAACTACTGCACTGTATAAGGGTCTTGGTGAGGCTGTCGTCGCAGCTGCTAAGTCTGCTCAGGCAAGCAATGTTGCTATTGTTCTTGCCTCTTCTGAAGGACTTTCTTCACAATCAAAGCTTAGCACTGCTTATGCAATTGCATCTGGGGCTGTGCTGGGATTATTTGAAGATCAAAGATACAAGTCAGAATCAAAGAAACCAGCAGTTAGATCCATTGACATTATTGGTCTTGGAACGGGACCTGAATTGGAGAAAAAGCTCAAGTATGCTGGAGATGTTTCTTCTGGAATAATTTTTGGAAGGGAGCTTGTAAACTCTCCTGCTAATGTTCTCACACCAGGGGTGTTGGCAGAAGAGGCATCTAAGGTTGCTTCCACCTATAGTGATGTTTTCACCGCTAAAATATTAGATGCTGATCAGTGCAAGGAATTGAAAATGGGGTCCTATCTAGGTGTTGCTGCAGCCTCGGCAAATCCTCCTCGTTTTATCCATCTTACTTACAAACCTCCAAGTGGATCTGTAAAGGTCAAGCTGGCTTTGGTTGGAAAAGGTTTGACTTTTGATAGTGGTGGCTACAACATCAAGACTGGACCTGGCTGTTCAATTGAACTCATGAAATTTGATATGGGTGGTTCAGCCGCAGTTTTAGGCGCTGCAAAAGCACTTGGTCAAATCAAACCTCTTGGGGTGGAGGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATCAGTGGAACAGGTATGAGGCCTGGAGATGTTGTCACAGCTTCAAATGGAAAAACTATTGAGGTGAACAACACTGATGCTGAGGGAAGACTCACACTGGCAGATGCTCTGGTATATGCTTGTAACCAAGGTGTTGAAAAGATTATTGATTTGGCAACCTTAACTGGGGCATGTGTAGTTGCTCTTGGGCCCTCAATTGCAGGTGTGTTTTCACCCAATGATGAACTGGTAAAAGAAGTTTTGGAAGCTTCTGAGGTGAGTGGGGAGAAACTATGGAGGCTGCCAATAGAGGAAAGCTACTGGGAATCAATGAAATCAGGAGTGGCTGATATGGTAAACACTGGTGGTAGACCAGGTGGTTCTATCACTGCTGCTCTTTTCCTGAAACAGTTTGTTGATGAAAAGGTTCAATGGTTGCATATTGACATGGCTGGTCCTGTGTGGAATGACAAGAAGCGCTCAGCGACAGGATTTGGCGTTGCTACTCTAGTGGAATGGGTTTTGAAAAATTCTTCTTAA
Protein sequence

>Msa1370500

MAAIASAIVIAFSKSSSSSLFLTSRIRFASFPKRSFHSTTKLMSQSRDTTLGLTHPTNIESPKISFSATDVDVTEWKGDILAVGVTEKDLTRDAKSRFENSILNKIDLKLDGLLSEASSEEDFSGKVGQSTVVRIKGLGSKRIGLIGLGQSPSTTALYKGLGEAVVAAAKSAQASNVAIVLASSEGLSSQSKLSTAYAIASGAVLGLFEDQRYKSESKKPAVRSIDIIGLGTGPELEKKLKYAGDVSSGIIFGRELVNSPANVLTPGVLAEEASKVASTYSDVFTAKILDADQCKELKMGSYLGVAAASANPPRFIHLTYKPPSGSVKVKLALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVLGAAKALGQIKPLGVEVHFIVAACENMISGTGMRPGDVVTASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIIDLATLTGACVVALGPSIAGVFSPNDELVKEVLEASEVSGEKLWRLPIEESYWESMKSGVADMVNTGGRPGGSITAALFLKQFVDEKVQWLHIDMAGPVWNDKKRSATGFGVATLVEWVLKNSS*