AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384010 MtrunA17_Chr4g0073971 98.589 567 8 0 1 567 1 567 0.0 1127
Msa1384010 MtrunA17_Chr2g0305841 74.688 561 126 7 20 567 26 583 0.0 826
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384010 AT2G24200.2 78.571 518 109 1 50 567 4 519 0.0 844
Msa1384010 AT2G24200.1 78.571 518 109 1 50 567 4 519 0.0 844
Msa1384010 AT4G30920.1 75.413 545 132 2 24 567 39 582 0.0 827
Msa1384010 AT4G30910.1 72.578 547 148 2 22 567 36 581 0.0 784
Msa1384010 AT4G30910.2 69.649 570 148 3 22 567 36 604 0.0 771
Msa1384010 AT2G24200.3 72.973 518 102 2 50 567 4 483 0.0 767
Msa1384010 AT5G13940.1 72.549 51 14 0 278 328 66 116 2.57e-16 83.2

Find 214 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAAATCATCTTGCTTTA+AGG 0.078973 tig0020633:+71119 Msa1384010:three_prime_UTR
TAATTATCATCCTTTGTTTC+TGG 0.117008 tig0020633:-71671 Msa1384020:intron
CTGAAATCTTCAAATATTAT+TGG 0.177832 tig0020633:+70647 Msa1384010:three_prime_UTR
TAGATGCTTAACTGAATTAT+TGG 0.179256 tig0020633:-70840 None:intergenic
TCCAATTCCAATCATTATTT+AGG 0.182086 tig0020633:+71858 Msa1384010:three_prime_UTR
GTTAGATCCATTGACATTAT+TGG 0.185386 tig0020633:+67058 Msa1384010:CDS
TTCAACTACTGCACTGTATA+AGG 0.215864 tig0020633:+66550 Msa1384010:CDS
TCAACCGTTGTTAGGATTAA+AGG 0.216149 tig0020633:+66482 Msa1384010:CDS
ATTAAGCACGCACCTGTTTC+AGG 0.219303 tig0020633:-70184 None:intergenic
ATTGATTTGGCAACCTTAAC+TGG 0.220073 tig0020633:+69704 Msa1384010:CDS
TGAACTCATGAAATTTGATA+TGG 0.264305 tig0020633:+68143 Msa1384010:CDS
CGTTCTTCGAAGTGTCTCTT+TGG 0.264938 tig0020633:-71377 Msa1384020:intron
CTCGTATATGTGCTGTTCTT+TGG 0.270383 tig0020633:-71632 Msa1384020:CDS
TCTTCTTCAGATTATTGATT+TGG 0.273791 tig0020633:+69691 Msa1384010:intron
TCATCCTTTGTTTCTGGAAT+TGG 0.279668 tig0020633:-71665 Msa1384020:intron
TCAGTGCAAGGAATTGAAAA+TGG 0.287397 tig0020633:+67380 Msa1384010:CDS
TCCCAGTAGCTTTCCTCTAT+TGG 0.292216 tig0020633:-70086 None:intergenic
TGAACTGGTAAAAGAAGTTT+TGG 0.297980 tig0020633:+70025 Msa1384010:CDS
TCCTAAATAATGATTGGAAT+TGG 0.311910 tig0020633:-71859 None:intergenic
TAGTTTCAACCATTATAATT+TGG 0.313757 tig0020633:-71404 Msa1384020:intron
ATGGTCTATGCTTGCATGCT+TGG 0.320759 tig0020633:-71456 Msa1384020:intron
CAGAAGCTATGGCCGCCATT+AGG 0.320957 tig0020633:-65930 None:intergenic
TCCATTGACATTATTGGTCT+TGG 0.330495 tig0020633:+67064 Msa1384010:CDS
GTCTCTTTGGGTAATTTAGA+AGG 0.336592 tig0020633:-71364 Msa1384020:intron
GACATTATTGGTCTTGGAAC+GGG 0.342266 tig0020633:+67070 Msa1384010:CDS
ATCTCTCGAGGAGGAATATA+AGG 0.347554 tig0020633:+71910 Msa1384010:three_prime_UTR
TCTTGGAACGGGACCTGAAT+TGG 0.350120 tig0020633:+67081 Msa1384010:CDS
TTGGTCAATCAACCGTTGTT+AGG 0.351523 tig0020633:+66474 Msa1384010:CDS
TATGCTGGAGATGTTTCTTC+TGG 0.355442 tig0020633:+67118 Msa1384010:CDS
GCTCTTGGGCCCTCAATTGC+AGG 0.355562 tig0020633:+69740 Msa1384010:CDS
GACAATTGGGCCAAGTTCTA+TGG 0.355591 tig0020633:-71475 Msa1384020:intron
CAGAAGATAAATCCCGATTC+TGG 0.357189 tig0020633:+71742 Msa1384010:three_prime_UTR
CAAATGTTGTTCGCGCTCAT+AGG 0.368494 tig0020633:-71584 Msa1384020:CDS
GAAATCAGGAGTGGCTGATA+TGG 0.370259 tig0020633:+70115 Msa1384010:CDS
AATTGTGCTAGGGGCTGTGC+TGG 0.374616 tig0020633:+66988 Msa1384010:intron
AGGTGAGTGGGGAGAAACTA+TGG 0.382649 tig0020633:+70057 Msa1384010:CDS
TGCTTATACTTGGATTGGAT+TGG 0.384255 tig0020633:-71145 None:intergenic
AGTTCGTCAAAGAAGACAAT+TGG 0.384611 tig0020633:-71489 Msa1384020:CDS
AGAAGCTATGGCCGCCATTA+GGG 0.385297 tig0020633:-65929 None:intergenic
TTGAAAATGGGGTCCTATCT+AGG 0.385305 tig0020633:+67393 Msa1384010:CDS
GGGGCATGTGTAGTTGCTCT+TGG 0.391607 tig0020633:+69725 Msa1384010:CDS
GATTCCAGCACTTGAGCATA+TGG 0.395770 tig0020633:+71512 Msa1384010:three_prime_UTR
GTTGGCAGAAGAGGCATCTA+AGG 0.398414 tig0020633:+67308 Msa1384010:CDS
GAACGTGGACCAAATTATAA+TGG 0.402272 tig0020633:+71395 Msa1384010:three_prime_UTR
AGCCAATTAAAATTAAAATC+AGG 0.403465 tig0020633:-65850 None:intergenic
AGGATTGGTTTGATCGGTCT+TGG 0.403728 tig0020633:+66518 Msa1384010:CDS
TGTAAAGGTCAAGCTGGCTT+TGG 0.404040 tig0020633:+67482 Msa1384010:CDS
CGTTGCTACTCTAGTGGAAT+GGG 0.404049 tig0020633:+70597 Msa1384010:CDS
TTGGTCAAATCAAACCTCTT+GGG 0.406712 tig0020633:+68202 Msa1384010:CDS
GTATTGGTGGTTCATCAAAA+TGG 0.412096 tig0020633:-71275 Msa1384020:CDS
TACTGGGAATCAATGAAATC+AGG 0.417445 tig0020633:+70101 Msa1384010:CDS
CCAATCCAAGTATAAGCAAA+AGG 0.418594 tig0020633:+71150 Msa1384010:three_prime_UTR
GGGCATGTGTAGTTGCTCTT+GGG 0.422892 tig0020633:+69726 Msa1384010:CDS
CGATTGATAATGAAAGTTGC+AGG 0.422947 tig0020633:-65767 None:intergenic
CAGTGCAAGGAATTGAAAAT+GGG 0.425078 tig0020633:+67381 Msa1384010:CDS
GCGTTGCTACTCTAGTGGAA+TGG 0.434843 tig0020633:+70596 Msa1384010:CDS
TTAGAAGGATCGAAATTCTT+CGG 0.441876 tig0020633:-71349 Msa1384020:intron
ATCTTGTCCTAAATAATGAT+TGG 0.441885 tig0020633:-71865 None:intergenic
AACTACACATGCCCCAGTTA+AGG 0.441925 tig0020633:-69717 None:intergenic
GAGAATATGATCAGTGGAAC+AGG 0.442053 tig0020633:+68536 Msa1384010:CDS
TGGAAGCTTCTGAGGTGAGT+GGG 0.445335 tig0020633:+70045 Msa1384010:CDS
GTTCTTCGAAGTGTCTCTTT+GGG 0.446315 tig0020633:-71376 Msa1384020:intron
ATTGTTCTTGCCTCTTCTGA+AGG 0.447563 tig0020633:+66629 Msa1384010:CDS
CGCAGCTGCTAAGTCTGCTC+AGG 0.448202 tig0020633:+66592 Msa1384010:CDS
TCAACTACTGCACTGTATAA+GGG 0.451795 tig0020633:+66551 Msa1384010:CDS
TTTATGAATAAGTAATTTGA+TGG 0.452718 tig0020633:+70736 Msa1384010:three_prime_UTR
GAACAAGATTGATTTGAAGT+TGG 0.456119 tig0020633:+66403 Msa1384010:CDS
CTTGGTCAAATCAAACCTCT+TGG 0.456662 tig0020633:+68201 Msa1384010:CDS
GACAAGAAGCGCTCAGCGAC+AGG 0.458688 tig0020633:+70568 Msa1384010:CDS
AAGCTGGCTTTGGTTGGAAA+AGG 0.463001 tig0020633:+67492 Msa1384010:CDS
CTTAGGGGATTCGATGTTGG+TGG 0.464392 tig0020633:-66100 None:intergenic
ACTGCTTATGCAATTGCATC+TGG 0.464876 tig0020633:+66677 Msa1384010:CDS
TTTGTAGTTTGTTGATGAAA+AGG 0.465143 tig0020633:+70504 Msa1384010:intron
AGCGGTGAAAACATCACTAT+AGG 0.468504 tig0020633:-67340 None:intergenic
ACTATGGAGGCTGCCAATAG+AGG 0.468865 tig0020633:+70073 Msa1384010:CDS
TCTTCTGAAGAGGATTTCTC+TGG 0.470409 tig0020633:+66446 Msa1384010:CDS
TCCAAGACCAATAATGTCAA+TGG 0.470434 tig0020633:-67065 None:intergenic
TAGACTCTCCCACACCCTAA+TGG 0.471832 tig0020633:+65915 Msa1384010:exon
TTGGAGGTTTGTAAGTAAGA+TGG 0.473742 tig0020633:-67452 None:intergenic
GAGGATTTCTCTGGTAAAGT+TGG 0.474128 tig0020633:+66455 Msa1384010:CDS
GGACTTGGATCAAAGAGGAT+TGG 0.480400 tig0020633:+66503 Msa1384010:CDS
GTTCTTTGGAAGATTGATCA+TGG 0.481023 tig0020633:-71618 Msa1384020:CDS
TTAGGGGATTCGATGTTGGT+GGG 0.482229 tig0020633:-66099 None:intergenic
TCGGCCATCAGTAGTTCAAA+TGG 0.483479 tig0020633:-71096 None:intergenic
AAGATTGATTTGAAGTTGGA+TGG 0.484032 tig0020633:+66407 Msa1384010:CDS
CACTTGGCGCATGTTCATGA+AGG 0.484532 tig0020633:+71775 Msa1384010:three_prime_UTR
CTCAGGGGTGTTGGCAGAAG+AGG 0.487176 tig0020633:+67299 Msa1384010:intron
GCTTGCATGCTTGGTTGGAG+TGG 0.487217 tig0020633:-71447 Msa1384020:intron
ATCTGAAGCTTCTTCTGAAG+AGG 0.487237 tig0020633:+66436 Msa1384010:CDS
GATGTTGTCACAGCTTCAAA+TGG 0.489147 tig0020633:+68572 Msa1384010:CDS
GTGGGAATGATATCCAGAAT+CGG 0.492243 tig0020633:-71755 Msa1384020:CDS
TCTATGCTTGCATGCTTGGT+TGG 0.492513 tig0020633:-71452 Msa1384020:intron
GCTTCTCGAGATGATAGAAT+AGG 0.494096 tig0020633:-71230 None:intergenic
TTATACAGTGCAGTAGTTGA+AGG 0.495394 tig0020633:-66548 None:intergenic
CAAGCATAGACCATAGAACT+TGG 0.496014 tig0020633:+71465 Msa1384010:three_prime_UTR
AATCAAACCTCTTGGGGTGG+AGG 0.496211 tig0020633:+68209 Msa1384010:CDS
GGCTGCAGCAACACCTAGAT+AGG 0.496969 tig0020633:-67406 None:intergenic
ACCTTTACAGATCCACTTGG+AGG 0.500187 tig0020633:-67468 None:intergenic
TGCCAATAGAGGAAAGCTAC+TGG 0.500297 tig0020633:+70084 Msa1384010:CDS
ATGTCAAAGGTTAGTAGTAT+TGG 0.501530 tig0020633:-71291 Msa1384020:CDS
ACTCACACTGGCAGATGCTC+TGG 0.502116 tig0020633:+69123 Msa1384010:CDS
GTTGTTAGGATTAAAGGACT+TGG 0.504860 tig0020633:+66488 Msa1384010:CDS
TTGTAACCAAGGTGTTGAAA+AGG 0.505556 tig0020633:+69153 Msa1384010:CDS
AAGGTCAAGCTGGCTTTGGT+TGG 0.507620 tig0020633:+67486 Msa1384010:CDS
GAACTCATGAAATTTGATAT+GGG 0.511960 tig0020633:+68144 Msa1384010:CDS
AGTGAGAAAGAGAGAAGAAG+AGG 0.514407 tig0020633:-65980 None:intergenic
CGGGAAGAAGAAAACACTAC+TGG 0.514621 tig0020633:-70901 None:intergenic
CTTGCATGCTTGGTTGGAGT+GGG 0.515060 tig0020633:-71446 Msa1384020:intron
TTGATTTGGCAACCTTAACT+GGG 0.515543 tig0020633:+69705 Msa1384010:CDS
TGGGAATGATATCCAGAATC+GGG 0.516246 tig0020633:-71754 Msa1384020:CDS
CAAAAGTTAAAGTTCCTCCT+AGG 0.516457 tig0020633:+71176 Msa1384010:three_prime_UTR
GAAGCTGTGACAACATCTCC+AGG 0.517489 tig0020633:-68566 None:intergenic
AGTGGAACAGGTATGAGGCC+TGG 0.518327 tig0020633:+68548 Msa1384010:CDS
CCTGCTAATGTTCTCACACC+AGG 0.523507 tig0020633:+67172 Msa1384010:CDS
AATAACAATGGCAGAAGCTA+TGG 0.524957 tig0020633:-65941 None:intergenic
AACCTTAGGGGATTCGATGT+TGG 0.525516 tig0020633:-66103 None:intergenic
TGGATCTGTAAAGGTCAAGC+TGG 0.527351 tig0020633:+67476 Msa1384010:CDS
ATGTCAATGGATCTAACTGC+TGG 0.528088 tig0020633:-67052 None:intergenic
ATATCCATATGCTCAAGTGC+TGG 0.528675 tig0020633:-71516 Msa1384020:CDS
CAATCCAAGTATAAGCAAAA+GGG 0.529205 tig0020633:+71151 Msa1384010:three_prime_UTR
GTTCGTCAAAGAAGACAATT+GGG 0.529438 tig0020633:-71488 Msa1384020:CDS
TTAGGCGCTGCAAAAGCACT+TGG 0.530667 tig0020633:+68183 Msa1384010:CDS
GTTGAATGAAAGCTTCGCTT+AGG 0.533152 tig0020633:-66027 None:intergenic
CTATCCATTTGAACTACTGA+TGG 0.536121 tig0020633:+71092 Msa1384010:three_prime_UTR
ATGAGTTCAATTGAACAGCC+AGG 0.536964 tig0020633:-68129 None:intergenic
TGATCAGTGGAACAGGTATG+AGG 0.537047 tig0020633:+68543 Msa1384010:CDS
TCAAAGGTTAGTAGTATTGG+TGG 0.540634 tig0020633:-71288 Msa1384020:CDS
TGACATTATTGGTCTTGGAA+CGG 0.541864 tig0020633:+67069 Msa1384010:CDS
ACCTCCAAGTGGATCTGTAA+AGG 0.542413 tig0020633:+67467 Msa1384010:CDS
TACAACATCAAGACTGGACC+TGG 0.549144 tig0020633:+68111 Msa1384010:CDS
ATTTGGCGTTGCTACTCTAG+TGG 0.550785 tig0020633:+70591 Msa1384010:CDS
CGACATTCAGCTCATGTCAA+AGG 0.553344 tig0020633:-71304 Msa1384020:CDS
GCCAATAGAGGAAAGCTACT+GGG 0.555482 tig0020633:+70085 Msa1384010:CDS
TCTAGGTGTTGCTGCAGCCT+CGG 0.555653 tig0020633:+67410 Msa1384010:CDS
TTGTTGATGAAAAGGTTCAA+TGG 0.556752 tig0020633:+70512 Msa1384010:CDS
TGGTCAAATCAAACCTCTTG+GGG 0.558742 tig0020633:+68203 Msa1384010:CDS
GGTGGCTACAACATCAAGAC+TGG 0.559048 tig0020633:+68105 Msa1384010:CDS
CTATGGCCGCCATTAGGGTG+TGG 0.559450 tig0020633:-65924 None:intergenic
ATAAGTAATTTGATGGTGGA+TGG 0.561782 tig0020633:+70743 Msa1384010:three_prime_UTR
GTAAACACTGGTGGTAGACC+AGG 0.562483 tig0020633:+70137 Msa1384010:CDS
CCTGGTGTGAGAACATTAGC+AGG 0.565403 tig0020633:-67172 None:intergenic
ATGAATAAGTAATTTGATGG+TGG 0.565978 tig0020633:+70739 Msa1384010:three_prime_UTR
AAGAAGAAAATTAACCTTAG+GGG 0.566260 tig0020633:-66115 None:intergenic
AATGTCGAGATCAGTTTCCC+CGG 0.566460 tig0020633:+71320 Msa1384010:three_prime_UTR
GGTAGTGCTGTTTACACTTG+AGG 0.567270 tig0020633:+65803 Msa1384010:five_prime_UTR
TTTGGATGAATAAGATGTGA+TGG 0.567909 tig0020633:+65876 Msa1384010:five_prime_UTR
AATCGGGATTTATCTTCTGA+TGG 0.568388 tig0020633:-71738 Msa1384020:intron
TTCTGGATATCATTCCCACT+TGG 0.568445 tig0020633:+71759 Msa1384010:three_prime_UTR
ATTGTGCTAGGGGCTGTGCT+GGG 0.569150 tig0020633:+66989 Msa1384010:intron
CACCAACATCGAATCCCCTA+AGG 0.573206 tig0020633:+66101 Msa1384010:CDS
CGGATGTTGATGTGACTGAA+TGG 0.573571 tig0020633:+66300 Msa1384010:CDS
ACTGCACTGTATAAGGGTCT+TGG 0.574721 tig0020633:+66557 Msa1384010:CDS
TTGGAAGCTTCTGAGGTGAG+TGG 0.576502 tig0020633:+70044 Msa1384010:CDS
GGGGTGAGTGAGGCCGAGAG+TGG 0.577763 tig0020633:-66079 None:intergenic
TGAAGAAAGTCCTTCAGAAG+AGG 0.580183 tig0020633:-66639 None:intergenic
TTGACCTTTACAGATCCACT+TGG 0.582503 tig0020633:-67471 None:intergenic
TCAAAGAGGATTGGTTTGAT+CGG 0.585762 tig0020633:+66512 Msa1384010:CDS
CTGGTATATGCTTGTAACCA+AGG 0.587703 tig0020633:+69142 Msa1384010:CDS
GGTCATAATACTCTTTACCT+AGG 0.588051 tig0020633:-71193 None:intergenic
CAGTCACGTGACACCACTCT+CGG 0.591727 tig0020633:+66066 Msa1384010:CDS
TATGGCCGCCATTAGGGTGT+GGG 0.593825 tig0020633:-65923 None:intergenic
GAAAGGAGACATACTAGCAG+TGG 0.593850 tig0020633:+66322 Msa1384010:CDS
TCTTCCAATTCCAGAAACAA+AGG 0.594024 tig0020633:+71661 Msa1384010:three_prime_UTR
GGAAGCTTCTGAGGTGAGTG+GGG 0.596647 tig0020633:+70046 Msa1384010:CDS
ACATGACTTGTATGTGCCCT+CGG 0.597069 tig0020633:-71560 Msa1384020:CDS
TTCATGAACATGCGCCAAGT+GGG 0.599014 tig0020633:-71773 Msa1384020:CDS
CGATGTTGGTGGGGTGAGTG+AGG 0.602177 tig0020633:-66089 None:intergenic
GATAGATTGCAGCACTCCGT+AGG 0.607576 tig0020633:-71074 None:intergenic
TGGTTGCATATTGACATGGC+TGG 0.610791 tig0020633:+70532 Msa1384010:CDS
AGGGACCAATGTGCTTCCTA+CGG 0.611347 tig0020633:+71058 Msa1384010:three_prime_UTR
TAGGGGATTCGATGTTGGTG+GGG 0.614139 tig0020633:-66098 None:intergenic
CTATCATCTCGAGAAGCAAG+AGG 0.615655 tig0020633:+71236 Msa1384010:three_prime_UTR
TTAAAGGACTTGGATCAAAG+AGG 0.618325 tig0020633:+66498 Msa1384010:CDS
CATAATACTCTTTACCTAGG+AGG 0.619598 tig0020633:-71190 None:intergenic
CTTCATGAACATGCGCCAAG+TGG 0.622212 tig0020633:-71774 None:intergenic
ATTAGATGCTGATCAGTGCA+AGG 0.622870 tig0020633:+67368 Msa1384010:CDS
TGACTAACCTCCACCCCAAG+AGG 0.623663 tig0020633:-68216 None:intergenic
TTGATGGTGGATGGAAAAGG+TGG 0.625881 tig0020633:+70752 Msa1384010:three_prime_UTR
ATGGAAAAGGTGGTAAGATG+AGG 0.626874 tig0020633:+70762 Msa1384010:three_prime_UTR
GGTGAAAACATCACTATAGG+TGG 0.627383 tig0020633:-67337 None:intergenic
TCAAATCAAACCTCTTGGGG+TGG 0.629691 tig0020633:+68206 Msa1384010:CDS
AAGAGACACTTCGAAGAACG+TGG 0.631094 tig0020633:+71380 Msa1384010:three_prime_UTR
CGCTTCTTGTCATTCCACAC+AGG 0.634105 tig0020633:-70556 None:intergenic
ACTGAGAGTTGAATCTCTCG+AGG 0.638664 tig0020633:+71898 Msa1384010:three_prime_UTR
TGCTTTGAGAGTGACACCGA+GGG 0.642437 tig0020633:+71544 Msa1384010:three_prime_UTR
AAACACTACTGGAGCTACGT+AGG 0.643784 tig0020633:-70890 None:intergenic
CTTACTTACAAACCTCCAAG+TGG 0.646870 tig0020633:+67456 Msa1384010:CDS
ACTGTATAAGGGTCTTGGTG+AGG 0.650936 tig0020633:+66562 Msa1384010:CDS
AAGTCCTTTAATCCTAACAA+CGG 0.658258 tig0020633:-66486 None:intergenic
TGATTTGGCAACCTTAACTG+GGG 0.658915 tig0020633:+69706 Msa1384010:CDS
TGCTGAGGGAAGACTCACAC+TGG 0.659444 tig0020633:+69111 Msa1384010:CDS
AATTTGATGGTGGATGGAAA+AGG 0.660741 tig0020633:+70749 Msa1384010:three_prime_UTR
AAAGGAGACATACTAGCAGT+GGG 0.660959 tig0020633:+66323 Msa1384010:CDS
AGTGCAAGGAATTGAAAATG+GGG 0.671375 tig0020633:+67382 Msa1384010:CDS
TTGACATGGCTGGTCCTGTG+TGG 0.671937 tig0020633:+70542 Msa1384010:CDS
TCAATGGTTGCATATTGACA+TGG 0.673345 tig0020633:+70528 Msa1384010:CDS
GGTGAACAACACTGATGCTG+AGG 0.673515 tig0020633:+69096 Msa1384010:intron
GTGAACAACACTGATGCTGA+GGG 0.676137 tig0020633:+69097 Msa1384010:CDS
CTCATGAAATTTGATATGGG+TGG 0.679380 tig0020633:+68147 Msa1384010:CDS
GAGAGTTGAATCTCTCGAGG+AGG 0.683067 tig0020633:+71901 Msa1384010:three_prime_UTR
GTTGATGTGACTGAATGGAA+AGG 0.683142 tig0020633:+66305 Msa1384010:CDS
GGAATCAATGAAATCAGGAG+TGG 0.685410 tig0020633:+70106 Msa1384010:CDS
GCACTCCGTAGGAAGCACAT+TGG 0.687018 tig0020633:-71063 None:intergenic
AACACTGGTGGTAGACCAGG+TGG 0.694030 tig0020633:+70140 Msa1384010:CDS
TAAGTAAGATGGATAAAACG+AGG 0.697138 tig0020633:-67441 None:intergenic
GCTTGTGAGAATATGATCAG+TGG 0.702653 tig0020633:+68530 Msa1384010:CDS
GCAGCAGTGATAGAACCACC+TGG 0.709003 tig0020633:-70155 None:intergenic
GTAAGATGGATAAAACGAGG+AGG 0.715083 tig0020633:-67438 None:intergenic
AAAACGAGGAGGATTTGCCG+AGG 0.716110 tig0020633:-67427 None:intergenic
GTGGCTGATATGGTAAACAC+TGG 0.719705 tig0020633:+70125 Msa1384010:CDS
TTGCTTTGAGAGTGACACCG+AGG 0.729272 tig0020633:+71543 Msa1384010:three_prime_UTR
TGAGTGGGGAGAAACTATGG+AGG 0.741229 tig0020633:+70060 Msa1384010:CDS
GCTGATATGGTAAACACTGG+TGG 0.751322 tig0020633:+70128 Msa1384010:CDS
ACTCTCCCACACCCTAATGG+CGG 0.754360 tig0020633:+65918 Msa1384010:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAATAAATATGAAAT+GGG - tig0020633:68017-68036 None:intergenic 10.0%
!! ACAAAAAAATAAATATGAAA+TGG - tig0020633:68018-68037 None:intergenic 10.0%
!!! ATTTAATATTTTGATAGATT+TGG + tig0020633:69268-69287 Msa1384010:intron 10.0%
!!! TATTTTAAGAAACTTATTAT+TGG + tig0020633:70401-70420 Msa1384010:intron 10.0%
!!! ATCCTGATTTTAATTTTAAT+TGG + tig0020633:65848-65867 Msa1384010:five_prime_UTR 15.0%
!!! TAATTTTAATTGGCTATTTT+TGG + tig0020633:65858-65877 Msa1384010:five_prime_UTR 15.0%
!! AAAACATTAGTAAATAGTAA+TGG - tig0020633:66788-66807 None:intergenic 15.0%
!!! AAATCAATGTTTCTAAAAAT+GGG - tig0020633:66852-66871 None:intergenic 15.0%
!!! AAAATCAATGTTTCTAAAAA+TGG - tig0020633:66853-66872 None:intergenic 15.0%
!! TGAATTGTAAATAAAAAACA+CGG - tig0020633:67546-67565 None:intergenic 15.0%
!!! TTTATTTTTTTGTTTGATGT+AGG + tig0020633:68025-68044 Msa1384010:intron 15.0%
!! AAAAAAAATCAAATGAGATT+AGG - tig0020633:68364-68383 None:intergenic 15.0%
!! AAATATGTATATATGTCATA+AGG + tig0020633:68725-68744 Msa1384010:intron 15.0%
!! AAATCTGTTTATGATTTATA+GGG - tig0020633:69219-69238 None:intergenic 15.0%
!! TATAAATCATAAACAGATTT+CGG + tig0020633:69219-69238 Msa1384010:intron 15.0%
!! GAAGTTTGTAAATATAAAAA+AGG - tig0020633:69569-69588 None:intergenic 15.0%
!!! CTAAGTTCATATATTATTTT+GGG + tig0020633:69889-69908 Msa1384010:intron 15.0%
!!! TAAGTTCATATATTATTTTG+GGG + tig0020633:69890-69909 Msa1384010:intron 15.0%
!!! TGAAAGATATATTATTTTGA+AGG + tig0020633:69984-70003 Msa1384010:intron 15.0%
!!! TGAAATTTTTACTATAGATT+AGG - tig0020633:70368-70387 None:intergenic 15.0%
!!! ATATACTAGTTTCTTAAATA+TGG + tig0020633:70430-70449 Msa1384010:intron 15.0%
!! ATAAGATAAAAATCATGTTA+TGG + tig0020633:70690-70709 Msa1384010:three_prime_UTR 15.0%
!! TTTATGAATAAGTAATTTGA+TGG + tig0020633:70736-70755 Msa1384010:three_prime_UTR 15.0%
!! AGCCAATTAAAATTAAAATC+AGG - tig0020633:65853-65872 None:intergenic 20.0%
!! TGAAACAAAAAAAGAAACAT+GGG - tig0020633:66152-66171 None:intergenic 20.0%
!! ATGAAACAAAAAAAGAAACA+TGG - tig0020633:66153-66172 None:intergenic 20.0%
!!! AATCAATGTTTCTAAAAATG+GGG - tig0020633:66851-66870 None:intergenic 20.0%
!! TATTTACAATTCATAAGACA+TGG + tig0020633:67553-67572 Msa1384010:intron 20.0%
!!! GTTGATAAATCTTTAATATG+AGG + tig0020633:67670-67689 Msa1384010:intron 20.0%
!! ACATGAAATTGAAAAATTGA+AGG - tig0020633:68256-68275 None:intergenic 20.0%
!! GTACAATAGGTTAAATTTAT+TGG - tig0020633:68645-68664 None:intergenic 20.0%
!! TAAATTTAACCTATTGTACA+TGG + tig0020633:68646-68665 Msa1384010:intron 20.0%
!!! GCTTCTTCAAATATTTTATT+TGG + tig0020633:68772-68791 Msa1384010:intron 20.0%
!!! ATTGCGAAACTTTTTTAAAA+TGG - tig0020633:68831-68850 None:intergenic 20.0%
!! AATAATCATTTATGATGCTT+GGG + tig0020633:68848-68867 Msa1384010:intron 20.0%
!! AAATCTATTGTAGTTATACT+TGG + tig0020633:68917-68936 Msa1384010:intron 20.0%
!! GTTAATACTTAACAAAATCA+AGG - tig0020633:69027-69046 None:intergenic 20.0%
!!! AACATTTTATATGATGTACT+AGG + tig0020633:69044-69063 Msa1384010:intron 20.0%
!! GAAATCTGTTTATGATTTAT+AGG - tig0020633:69220-69239 None:intergenic 20.0%
!! AAATGTTAAGCAAATGATTT+GGG - tig0020633:69252-69271 None:intergenic 20.0%
!! TAAATGTTAAGCAAATGATT+TGG - tig0020633:69253-69272 None:intergenic 20.0%
!! ATATTCTTAAAGAATGAGAA+TGG - tig0020633:69484-69503 None:intergenic 20.0%
!!! TCATTCTTTAAGAATATCTA+TGG + tig0020633:69487-69506 Msa1384010:intron 20.0%
!! CCAAAATAATATATGAACTT+AGG - tig0020633:69891-69910 None:intergenic 20.0%
!!! CCTAAGTTCATATATTATTT+TGG + tig0020633:69888-69907 Msa1384010:intron 20.0%
!! GAAAAATTCAAACAATAACA+CGG - tig0020633:70221-70240 None:intergenic 20.0%
!!! ATTTTTCTTCTCAATGTAAT+TGG + tig0020633:70234-70253 Msa1384010:intron 20.0%
!! TTTAAGAAACTTATTATTGG+AGG + tig0020633:70404-70423 Msa1384010:intron 20.0%
!! CTGAAATCTTCAAATATTAT+TGG + tig0020633:70647-70666 Msa1384010:three_prime_UTR 20.0%
!!! AAAGAATACTTTGTATTTTC+AGG + tig0020633:70812-70831 Msa1384010:three_prime_UTR 20.0%
!!! AAGAATACTTTGTATTTTCA+GGG + tig0020633:70813-70832 Msa1384010:three_prime_UTR 20.0%
!! TAGTTTCTTACAGAAAAAAA+AGG + tig0020633:71010-71029 Msa1384010:three_prime_UTR 20.0%
!! TAGTTTCAACCATTATAATT+TGG - tig0020633:71407-71426 Msa1384020:intron 20.0%
!!! GTTTTAGTTTAGTTACTTAT+TGG + tig0020633:71797-71816 Msa1384010:three_prime_UTR 20.0%
! TCATTATCAATCGAGAAAAA+CGG + tig0020633:65777-65796 Msa1384010:five_prime_UTR 25.0%
!!! TTTTGAGAAAGCAATAACAA+TGG - tig0020633:65956-65975 None:intergenic 25.0%
! AAGAAGAAAATTAACCTTAG+GGG - tig0020633:66118-66137 None:intergenic 25.0%
! GAAGAAGAAAATTAACCTTA+GGG - tig0020633:66119-66138 None:intergenic 25.0%
! TGAAGAAGAAAATTAACCTT+AGG - tig0020633:66120-66139 None:intergenic 25.0%
!! AATTTTCACAAACACGTTAA+AGG - tig0020633:66256-66275 None:intergenic 25.0%
! AGTGTTTGATGTGTTAAAAT+AGG + tig0020633:66755-66774 Msa1384010:intron 25.0%
! GTGTTTGATGTGTTAAAATA+GGG + tig0020633:66756-66775 Msa1384010:intron 25.0%
!! ATCATCACAAACTTTAGAAA+TGG + tig0020633:66874-66893 Msa1384010:intron 25.0%
!!! GTTTCTTCTGGAATAATTTT+TGG + tig0020633:67130-67149 Msa1384010:CDS 25.0%
!!! TTCTGGAATAATTTTTGGAA+GGG + tig0020633:67135-67154 Msa1384010:CDS 25.0%
!!! ATCAGCATCTAATATTTTAG+CGG - tig0020633:67361-67380 None:intergenic 25.0%
! TGTAAATAAAAAACACGGTT+TGG - tig0020633:67541-67560 None:intergenic 25.0%
! AGACATGGAAAAATTTGAAA+CGG + tig0020633:67568-67587 Msa1384010:intron 25.0%
!!! ATTATCCATGGTTTTGATTA+TGG + tig0020633:67604-67623 Msa1384010:intron 25.0%
!! GTTGTTTCAACTCAAAATTA+AGG + tig0020633:67974-67993 Msa1384010:intron 25.0%
! AACGTAATAAAAAAGCAGTA+AGG - tig0020633:68068-68087 None:intergenic 25.0%
! TGAACTCATGAAATTTGATA+TGG + tig0020633:68143-68162 Msa1384010:CDS 25.0%
! GAACTCATGAAATTTGATAT+GGG + tig0020633:68144-68163 Msa1384010:CDS 25.0%
!! TTTATACAAACCCGTTATTT+TGG - tig0020633:68322-68341 None:intergenic 25.0%
! ATAATAAGAGTTGTTGAGTA+TGG + tig0020633:68391-68410 Msa1384010:intron 25.0%
!!! GGATTTTCATTTTACTTTTC+TGG + tig0020633:68412-68431 Msa1384010:intron 25.0%
!!! TTTTCATTTTACTTTTCTGG+TGG + tig0020633:68415-68434 Msa1384010:intron 25.0%
!!! AATGATTTGTTTGGAATACT+TGG + tig0020633:68452-68471 Msa1384010:intron 25.0%
! TTCAAATGGAAAAACTATTG+AGG + tig0020633:68586-68605 Msa1384010:CDS 25.0%
! CAATAATCATTTATGATGCT+TGG + tig0020633:68847-68866 Msa1384010:intron 25.0%
! ATATGTTTACAGAGTTCATA+GGG - tig0020633:68994-69013 None:intergenic 25.0%
! AGTCAAAATGTGAATTTAGT+TGG - tig0020633:69438-69457 None:intergenic 25.0%
!! TCTTCTTCAGATTATTGATT+TGG + tig0020633:69691-69710 Msa1384010:intron 25.0%
!!! TTATTTTTACCTGCAATTGA+GGG - tig0020633:69752-69771 None:intergenic 25.0%
!!! TTTATTTTTACCTGCAATTG+AGG - tig0020633:69753-69772 None:intergenic 25.0%
! GGAATATGGTAATAAAAAAG+AGG - tig0020633:69808-69827 None:intergenic 25.0%
!!! TAGCAAGAAATTTTGGAATA+TGG - tig0020633:69822-69841 None:intergenic 25.0%
!! CTAATTCTAGCAAGAAATTT+TGG - tig0020633:69829-69848 None:intergenic 25.0%
! CAAAATTTCTTGCTAGAATT+AGG + tig0020633:69827-69846 Msa1384010:intron 25.0%
!! AAAACTCTCAATATTTTGCT+TGG + tig0020633:69854-69873 Msa1384010:intron 25.0%
!!! TTTGTAGTTTGTTGATGAAA+AGG + tig0020633:70504-70523 Msa1384010:intron 25.0%
!! AAATCATGTTATGGTTTTTC+TGG + tig0020633:70699-70718 Msa1384010:three_prime_UTR 25.0%
!!! TTATGGTTTTTCTGGTTATT+TGG + tig0020633:70707-70726 Msa1384010:three_prime_UTR 25.0%
!!! TATGGTTTTTCTGGTTATTT+GGG + tig0020633:70708-70727 Msa1384010:three_prime_UTR 25.0%
! ATGAATAAGTAATTTGATGG+TGG + tig0020633:70739-70758 Msa1384010:three_prime_UTR 25.0%
!! TTTTTGTATTGAATACACTG+TGG - tig0020633:70794-70813 None:intergenic 25.0%
! TAGATGCTTAACTGAATTAT+TGG - tig0020633:70843-70862 None:intergenic 25.0%
!!! TTGTTTCTTTTTCTTTTGGA+GGG + tig0020633:71039-71058 Msa1384010:three_prime_UTR 25.0%
!! AAAGCAAGATGATTTTACAT+CGG - tig0020633:71118-71137 None:intergenic 25.0%
! TGTAAAATCATCTTGCTTTA+AGG + tig0020633:71119-71138 Msa1384010:three_prime_UTR 25.0%
!! TAATTATCATCCTTTGTTTC+TGG - tig0020633:71674-71693 Msa1384020:intron 25.0%
! TCCAATTCCAATCATTATTT+AGG + tig0020633:71858-71877 Msa1384010:three_prime_UTR 25.0%
! TCCTAAATAATGATTGGAAT+TGG - tig0020633:71862-71881 None:intergenic 25.0%
! ATCTTGTCCTAAATAATGAT+TGG - tig0020633:71868-71887 None:intergenic 25.0%
TTTGGATGAATAAGATGTGA+TGG + tig0020633:65876-65895 Msa1384010:five_prime_UTR 30.0%
! AAAGATCTCTTTTTCTGCTA+CGG + tig0020633:66280-66299 Msa1384010:intron 30.0%
!! GAACAAGATTGATTTGAAGT+TGG + tig0020633:66403-66422 Msa1384010:CDS 30.0%
!! AAGATTGATTTGAAGTTGGA+TGG + tig0020633:66407-66426 Msa1384010:CDS 30.0%
AAGTCCTTTAATCCTAACAA+CGG - tig0020633:66489-66508 None:intergenic 30.0%
ATATACACACAAGACAAGTA+GGG - tig0020633:66907-66926 None:intergenic 30.0%
GTTAGATCCATTGACATTAT+TGG + tig0020633:67058-67077 Msa1384010:CDS 30.0%
!!! CTTCTGGAATAATTTTTGGA+AGG + tig0020633:67134-67153 Msa1384010:CDS 30.0%
! TCTAAAATCTGATCTGTACT+TGG + tig0020633:67264-67283 Msa1384010:intron 30.0%
TAAGTAAGATGGATAAAACG+AGG - tig0020633:67444-67463 None:intergenic 30.0%
!! GAAAAGGTTTGACTTTTGAT+AGG + tig0020633:67508-67527 Msa1384010:CDS 30.0%
! GACATGGAAAAATTTGAAAC+GGG + tig0020633:67569-67588 Msa1384010:intron 30.0%
TCAAAACCATGGATAATACA+GGG - tig0020633:67601-67620 None:intergenic 30.0%
ATCAAAACCATGGATAATAC+AGG - tig0020633:67602-67621 None:intergenic 30.0%
AATAATTTGATCCATGTAGC+CGG - tig0020633:67767-67786 None:intergenic 30.0%
TACAATGGCATACTAAGTAT+TGG + tig0020633:67938-67957 Msa1384010:intron 30.0%
! AGGTTAGTCACTTAAATCAT+TGG + tig0020633:68229-68248 Msa1384010:intron 30.0%
! TTTCATGTCAAGATTTGCTT+AGG + tig0020633:68268-68287 Msa1384010:intron 30.0%
! TTCATGTCAAGATTTGCTTA+GGG + tig0020633:68269-68288 Msa1384010:intron 30.0%
! AAGATTTGCTTAGGGATTAT+TGG + tig0020633:68277-68296 Msa1384010:intron 30.0%
! AGATTTGCTTAGGGATTATT+GGG + tig0020633:68278-68297 Msa1384010:intron 30.0%
ATTATTGGGTGATGTAGTAT+GGG + tig0020633:68292-68311 Msa1384010:intron 30.0%
ATTCCAAACAAATCATTCCA+CGG - tig0020633:68449-68468 None:intergenic 30.0%
AATAAAAACCTTGCATATGC+AGG + tig0020633:68490-68509 Msa1384010:intron 30.0%
! TTGCAATTGAAGAGAAGTTT+TGG + tig0020633:68967-68986 Msa1384010:intron 30.0%
TATGTTTACAGAGTTCATAG+GGG - tig0020633:68993-69012 None:intergenic 30.0%
CATATGTTTACAGAGTTCAT+AGG - tig0020633:68995-69014 None:intergenic 30.0%
ATGTACTAGGAATTTGACAT+TGG + tig0020633:69057-69076 Msa1384010:intron 30.0%
! ATTGGTGTAACTTTTTGTGT+AGG + tig0020633:69075-69094 Msa1384010:intron 30.0%
GATGAAAGAGAATTACTAGT+AGG + tig0020633:69309-69328 Msa1384010:intron 30.0%
! ATATAAGAGTGTACTCAAGA+CGG - tig0020633:69359-69378 None:intergenic 30.0%
!! GGACAAGTTTACTTTTGTTT+CGG + tig0020633:69508-69527 Msa1384010:intron 30.0%
!! CTCATATGTTGTTTGTTTTC+TGG + tig0020633:69588-69607 Msa1384010:intron 30.0%
!!! AGTTTTAGAATACTGCTAAC+TGG + tig0020633:69659-69678 Msa1384010:intron 30.0%
GGAAATAGTAAAGCTAAACT+CGG + tig0020633:69911-69930 Msa1384010:intron 30.0%
GAAATAGTAAAGCTAAACTC+GGG + tig0020633:69912-69931 Msa1384010:intron 30.0%
!! GTTTGACAGTTTTATCTTTC+AGG - tig0020633:69948-69967 None:intergenic 30.0%
! TCTTTTACCAGTTCATCATT+GGG - tig0020633:70020-70039 None:intergenic 30.0%
! TTCTTTTACCAGTTCATCAT+TGG - tig0020633:70021-70040 None:intergenic 30.0%
! TGAACTGGTAAAAGAAGTTT+TGG + tig0020633:70025-70044 Msa1384010:CDS 30.0%
CACAATCACTTGGATAAATA+TGG - tig0020633:70324-70343 None:intergenic 30.0%
! TTGTTGATGAAAAGGTTCAA+TGG + tig0020633:70512-70531 Msa1384010:CDS 30.0%
!!! ATGGTTTTTCTGGTTATTTG+GGG + tig0020633:70709-70728 Msa1384010:three_prime_UTR 30.0%
!! ATAAGTAATTTGATGGTGGA+TGG + tig0020633:70743-70762 Msa1384010:three_prime_UTR 30.0%
!! CAGCTTGTTTCTTTTTCTTT+TGG + tig0020633:71035-71054 Msa1384010:three_prime_UTR 30.0%
!! CTTGTTTCTTTTTCTTTTGG+AGG + tig0020633:71038-71057 Msa1384010:three_prime_UTR 30.0%
CAATCCAAGTATAAGCAAAA+GGG + tig0020633:71151-71170 Msa1384010:three_prime_UTR 30.0%
!!! GAATAGGCACTTTTTTTTAG+TGG - tig0020633:71217-71236 None:intergenic 30.0%
ATGTCAAAGGTTAGTAGTAT+TGG - tig0020633:71294-71313 Msa1384020:CDS 30.0%
TTAGAAGGATCGAAATTCTT+CGG - tig0020633:71352-71371 Msa1384020:intron 30.0%
!! CGATTGATAATGAAAGTTGC+AGG - tig0020633:65770-65789 None:intergenic 35.0%
AATAACAATGGCAGAAGCTA+TGG - tig0020633:65944-65963 None:intergenic 35.0%
!!! ACTTGTTGATTTTCTCGTTG+TGG + tig0020633:66200-66219 Msa1384010:intron 35.0%
!!! CTTGTTGATTTTCTCGTTGT+GGG + tig0020633:66201-66220 Msa1384010:intron 35.0%
AGCAGAAAAAGAGATCTTTC+AGG - tig0020633:66279-66298 None:intergenic 35.0%
TCAACCGTTGTTAGGATTAA+AGG + tig0020633:66482-66501 Msa1384010:CDS 35.0%
GTTGTTAGGATTAAAGGACT+TGG + tig0020633:66488-66507 Msa1384010:CDS 35.0%
TTAAAGGACTTGGATCAAAG+AGG + tig0020633:66498-66517 Msa1384010:CDS 35.0%
!! TCAAAGAGGATTGGTTTGAT+CGG + tig0020633:66512-66531 Msa1384010:CDS 35.0%
TTATACAGTGCAGTAGTTGA+AGG - tig0020633:66551-66570 None:intergenic 35.0%
TTCAACTACTGCACTGTATA+AGG + tig0020633:66550-66569 Msa1384010:CDS 35.0%
TCAACTACTGCACTGTATAA+GGG + tig0020633:66551-66570 Msa1384010:CDS 35.0%
! CACAAACTTTAGAAATGGTG+AGG + tig0020633:66879-66898 Msa1384010:intron 35.0%
CATATACACACAAGACAAGT+AGG - tig0020633:66908-66927 None:intergenic 35.0%
TTATAGCTACATTTGATGCG+TGG + tig0020633:66960-66979 Msa1384010:intron 35.0%
TATAGCTACATTTGATGCGT+GGG + tig0020633:66961-66980 Msa1384010:intron 35.0%
! TCCATTGACATTATTGGTCT+TGG + tig0020633:67064-67083 Msa1384010:CDS 35.0%
TCCAAGACCAATAATGTCAA+TGG - tig0020633:67068-67087 None:intergenic 35.0%
!! TGACATTATTGGTCTTGGAA+CGG + tig0020633:67069-67088 Msa1384010:CDS 35.0%
!! TTGAGCTTTTTCTCCAATTC+AGG - tig0020633:67097-67116 None:intergenic 35.0%
!!! ATCTGTACTTGGTGATGTTT+TGG + tig0020633:67275-67294 Msa1384010:intron 35.0%
TCAGTGCAAGGAATTGAAAA+TGG + tig0020633:67380-67399 Msa1384010:CDS 35.0%
CAGTGCAAGGAATTGAAAAT+GGG + tig0020633:67381-67400 Msa1384010:CDS 35.0%
AGTGCAAGGAATTGAAAATG+GGG + tig0020633:67382-67401 Msa1384010:CDS 35.0%
TTGGAGGTTTGTAAGTAAGA+TGG - tig0020633:67455-67474 None:intergenic 35.0%
TGGTACCATAATCAAAACCA+TGG - tig0020633:67612-67631 None:intergenic 35.0%
TATGGTACCAAAACTATCAG+CGG + tig0020633:67622-67641 Msa1384010:intron 35.0%
! TTCATAACCGCTGATAGTTT+TGG - tig0020633:67632-67651 None:intergenic 35.0%
GGCTACATGGATCAAATTAT+TGG + tig0020633:67766-67785 Msa1384010:intron 35.0%
AAATTATTGGTCCGTCTCAT+AGG + tig0020633:67779-67798 Msa1384010:intron 35.0%
AATTATTGGTCCGTCTCATA+GGG + tig0020633:67780-67799 Msa1384010:intron 35.0%
! GATTCGACAAAGTTTTACGT+TGG + tig0020633:67802-67821 Msa1384010:intron 35.0%
AGTATGCCATTGTAGCAAAT+TGG - tig0020633:67932-67951 None:intergenic 35.0%
ACTCAAAATTAAGGAGTCCA+TGG + tig0020633:67983-68002 Msa1384010:intron 35.0%
TGAAATGGGAAAGAAAACCA+TGG - tig0020633:68003-68022 None:intergenic 35.0%
!!! CGTTTTCTGCTTTTTATCAG+TGG + tig0020633:68084-68103 Msa1384010:intron 35.0%
!!! TTTCTGCTTTTTATCAGTGG+TGG + tig0020633:68087-68106 Msa1384010:intron 35.0%
CTCATGAAATTTGATATGGG+TGG + tig0020633:68147-68166 Msa1384010:CDS 35.0%
TTGGTCAAATCAAACCTCTT+GGG + tig0020633:68202-68221 Msa1384010:CDS 35.0%
GATTATTGGGTGATGTAGTA+TGG + tig0020633:68291-68310 Msa1384010:intron 35.0%
GTATGGGATCTCCAAAATAA+CGG + tig0020633:68308-68327 Msa1384010:intron 35.0%
TATGGGATCTCCAAAATAAC+GGG + tig0020633:68309-68328 Msa1384010:intron 35.0%
!! TTTCCGTGGAATGATTTGTT+TGG + tig0020633:68443-68462 Msa1384010:intron 35.0%
! GATTTGTTTGGAATACTTGG+TGG + tig0020633:68455-68474 Msa1384010:intron 35.0%
AAAATGAACCTGCATATGCA+AGG - tig0020633:68501-68520 None:intergenic 35.0%
ATGGAAAAACTATTGAGGTG+AGG + tig0020633:68591-68610 Msa1384010:intron 35.0%
TGGAAAAACTATTGAGGTGA+GGG + tig0020633:68592-68611 Msa1384010:intron 35.0%
GCATCAATACCATGTACAAT+AGG - tig0020633:68658-68677 None:intergenic 35.0%
ATATATGTCATAAGGTCCAG+TGG + tig0020633:68733-68752 Msa1384010:intron 35.0%
!! TTGTAACCAAGGTGTTGAAA+AGG + tig0020633:69153-69172 Msa1384010:CDS 35.0%
! AGTATACCTTTTCAACACCT+TGG - tig0020633:69162-69181 None:intergenic 35.0%
! GTTAAGCAAATGATTTGGGA+AGG - tig0020633:69248-69267 None:intergenic 35.0%
CTCAAGACGGTGTAAAAAAT+GGG - tig0020633:69346-69365 None:intergenic 35.0%
ACTCAAGACGGTGTAAAAAA+TGG - tig0020633:69347-69366 None:intergenic 35.0%
TACTGGGAATCAATGAAATC+AGG + tig0020633:70101-70120 Msa1384010:CDS 35.0%
TCAATGGTTGCATATTGACA+TGG + tig0020633:70528-70547 Msa1384010:CDS 35.0%
!! AATTTGATGGTGGATGGAAA+AGG + tig0020633:70749-70768 Msa1384010:three_prime_UTR 35.0%
!!! TGCGTTTGTTTGTTTTTGAC+GGG - tig0020633:70923-70942 None:intergenic 35.0%
!!! CTGCGTTTGTTTGTTTTTGA+CGG - tig0020633:70924-70943 None:intergenic 35.0%
CTATCCATTTGAACTACTGA+TGG + tig0020633:71092-71111 Msa1384010:three_prime_UTR 35.0%
! TGCTTATACTTGGATTGGAT+TGG - tig0020633:71148-71167 None:intergenic 35.0%
! CCTTTTGCTTATACTTGGAT+TGG - tig0020633:71153-71172 None:intergenic 35.0%
CCAATCCAAGTATAAGCAAA+AGG + tig0020633:71150-71169 Msa1384010:three_prime_UTR 35.0%
! TGATCCCTTTTGCTTATACT+TGG - tig0020633:71158-71177 None:intergenic 35.0%
CAAAAGTTAAAGTTCCTCCT+AGG + tig0020633:71176-71195 Msa1384010:three_prime_UTR 35.0%
CATAATACTCTTTACCTAGG+AGG - tig0020633:71193-71212 None:intergenic 35.0%
GGTCATAATACTCTTTACCT+AGG - tig0020633:71196-71215 None:intergenic 35.0%
! GTATTGGTGGTTCATCAAAA+TGG - tig0020633:71278-71297 Msa1384020:CDS 35.0%
! TCAAAGGTTAGTAGTATTGG+TGG - tig0020633:71291-71310 Msa1384020:CDS 35.0%
!!! AAATTCTTCGGTTTTTTCCG+GGG - tig0020633:71340-71359 Msa1384020:CDS 35.0%
!!! GAAATTCTTCGGTTTTTTCC+GGG - tig0020633:71341-71360 Msa1384020:CDS 35.0%
!!! CGAAATTCTTCGGTTTTTTC+CGG - tig0020633:71342-71361 Msa1384020:CDS 35.0%
GTCTCTTTGGGTAATTTAGA+AGG - tig0020633:71367-71386 Msa1384020:intron 35.0%
GAACGTGGACCAAATTATAA+TGG + tig0020633:71395-71414 Msa1384010:three_prime_UTR 35.0%
GTTCGTCAAAGAAGACAATT+GGG - tig0020633:71491-71510 Msa1384020:CDS 35.0%
AGTTCGTCAAAGAAGACAAT+TGG - tig0020633:71492-71511 Msa1384020:CDS 35.0%
! GTTCTTTGGAAGATTGATCA+TGG - tig0020633:71621-71640 Msa1384020:CDS 35.0%
TCTTCCAATTCCAGAAACAA+AGG + tig0020633:71661-71680 Msa1384010:three_prime_UTR 35.0%
!! TCATCCTTTGTTTCTGGAAT+TGG - tig0020633:71668-71687 Msa1384020:intron 35.0%
AATCGGGATTTATCTTCTGA+TGG - tig0020633:71741-71760 Msa1384020:CDS 35.0%
ATCAATCGAGAAAAACGGAC+AGG + tig0020633:65782-65801 Msa1384010:five_prime_UTR 40.0%
AGTGAGAAAGAGAGAAGAAG+AGG - tig0020633:65983-66002 None:intergenic 40.0%
GTTGAATGAAAGCTTCGCTT+AGG - tig0020633:66030-66049 None:intergenic 40.0%
GTTGATGTGACTGAATGGAA+AGG + tig0020633:66305-66324 Msa1384010:CDS 40.0%
AAAGGAGACATACTAGCAGT+GGG + tig0020633:66323-66342 Msa1384010:CDS 40.0%
! ATCTGAAGCTTCTTCTGAAG+AGG + tig0020633:66436-66455 Msa1384010:CDS 40.0%
! TCTTCTGAAGAGGATTTCTC+TGG + tig0020633:66446-66465 Msa1384010:CDS 40.0%
GAGGATTTCTCTGGTAAAGT+TGG + tig0020633:66455-66474 Msa1384010:CDS 40.0%
TTGGTCAATCAACCGTTGTT+AGG + tig0020633:66474-66493 Msa1384010:CDS 40.0%
ATTGTTCTTGCCTCTTCTGA+AGG + tig0020633:66629-66648 Msa1384010:CDS 40.0%
TGAAGAAAGTCCTTCAGAAG+AGG - tig0020633:66642-66661 None:intergenic 40.0%
ACTGCTTATGCAATTGCATC+TGG + tig0020633:66677-66696 Msa1384010:CDS 40.0%
ATGTCAATGGATCTAACTGC+TGG - tig0020633:67055-67074 None:intergenic 40.0%
!! GACATTATTGGTCTTGGAAC+GGG + tig0020633:67070-67089 Msa1384010:CDS 40.0%
GAGAAAAAGCTCAAGTATGC+TGG + tig0020633:67103-67122 Msa1384010:CDS 40.0%
TATGCTGGAGATGTTTCTTC+TGG + tig0020633:67118-67137 Msa1384010:CDS 40.0%
!! TTTAAAGTGTCGTACGAACC+TGG - tig0020633:67193-67212 None:intergenic 40.0%
!!! TTGGTGATGTTTTGGTCTCA+GGG + tig0020633:67283-67302 Msa1384010:intron 40.0%
GGTGAAAACATCACTATAGG+TGG - tig0020633:67340-67359 None:intergenic 40.0%
AGCGGTGAAAACATCACTAT+AGG - tig0020633:67343-67362 None:intergenic 40.0%
ATTAGATGCTGATCAGTGCA+AGG + tig0020633:67368-67387 Msa1384010:CDS 40.0%
TTGAAAATGGGGTCCTATCT+AGG + tig0020633:67393-67412 Msa1384010:CDS 40.0%
GTAAGATGGATAAAACGAGG+AGG - tig0020633:67441-67460 None:intergenic 40.0%
CTTACTTACAAACCTCCAAG+TGG + tig0020633:67456-67475 Msa1384010:CDS 40.0%
TTGACCTTTACAGATCCACT+TGG - tig0020633:67474-67493 None:intergenic 40.0%
ATTCCACCCTGTATTATCCA+TGG + tig0020633:67592-67611 Msa1384010:intron 40.0%
AAACCATGGATAATACAGGG+TGG - tig0020633:67598-67617 None:intergenic 40.0%
! CAAGCCTTATCCCACTAAAT+GGG + tig0020633:67740-67759 Msa1384010:intron 40.0%
TTTGTCGAATCCCTATGAGA+CGG - tig0020633:67793-67812 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+GGG - tig0020633:67837-67856 None:intergenic 40.0%
ATGCTTGACAAGGCTAACAT+AGG + tig0020633:67876-67895 Msa1384010:intron 40.0%
!! GCATTGCCAATTTGCTACAA+TGG + tig0020633:67923-67942 Msa1384010:intron 40.0%
ATGAGTTCAATTGAACAGCC+AGG - tig0020633:68132-68151 None:intergenic 40.0%
CTTGGTCAAATCAAACCTCT+TGG + tig0020633:68201-68220 Msa1384010:CDS 40.0%
TGGTCAAATCAAACCTCTTG+GGG + tig0020633:68203-68222 Msa1384010:CDS 40.0%
GCTTGTGAGAATATGATCAG+TGG + tig0020633:68530-68549 Msa1384010:CDS 40.0%
GAGAATATGATCAGTGGAAC+AGG + tig0020633:68536-68555 Msa1384010:CDS 40.0%
GATGTTGTCACAGCTTCAAA+TGG + tig0020633:68572-68591 Msa1384010:CDS 40.0%
TATTGAGGTGAGGGTTTACT+AGG + tig0020633:68601-68620 Msa1384010:intron 40.0%
ACAAATTACATGCTGTCCAC+TGG - tig0020633:68752-68771 None:intergenic 40.0%
CTGGTATATGCTTGTAACCA+AGG + tig0020633:69142-69161 Msa1384010:CDS 40.0%
! GTTTTCACCCAATGATGAAC+TGG + tig0020633:70010-70029 Msa1384010:CDS 40.0%
!!! AGAAGTTTTGGAAGCTTCTG+AGG + tig0020633:70037-70056 Msa1384010:CDS 40.0%
GGAATCAATGAAATCAGGAG+TGG + tig0020633:70106-70125 Msa1384010:CDS 40.0%
ATGTAATTGGACAGCTGTGT+TGG + tig0020633:70247-70266 Msa1384010:intron 40.0%
TGTAATTGGACAGCTGTGTT+GGG + tig0020633:70248-70267 Msa1384010:intron 40.0%
CAGATGTTATTACCACTCCA+CGG - tig0020633:70276-70295 None:intergenic 40.0%
! TAGGACAGTTCAAGTTCCAA+TGG - tig0020633:70349-70368 None:intergenic 40.0%
ATGGAAAAGGTGGTAAGATG+AGG + tig0020633:70762-70781 Msa1384010:three_prime_UTR 40.0%
! GCAGTGTCTTCTTTTGCAAA+GGG + tig0020633:70940-70959 Msa1384010:three_prime_UTR 40.0%
! CAGTGTCTTCTTTTGCAAAG+GGG + tig0020633:70941-70960 Msa1384010:three_prime_UTR 40.0%
! AGTGTCTTCTTTTGCAAAGG+GGG + tig0020633:70942-70961 Msa1384010:three_prime_UTR 40.0%
GCTTCTCGAGATGATAGAAT+AGG - tig0020633:71233-71252 None:intergenic 40.0%
! GTTCTTCGAAGTGTCTCTTT+GGG - tig0020633:71379-71398 Msa1384020:intron 40.0%
CAAGCATAGACCATAGAACT+TGG + tig0020633:71465-71484 Msa1384010:three_prime_UTR 40.0%
ATATCCATATGCTCAAGTGC+TGG - tig0020633:71519-71538 Msa1384020:CDS 40.0%
! CTCGTATATGTGCTGTTCTT+TGG - tig0020633:71635-71654 Msa1384020:CDS 40.0%
CAGAAGATAAATCCCGATTC+TGG + tig0020633:71742-71761 Msa1384010:three_prime_UTR 40.0%
TGGGAATGATATCCAGAATC+GGG - tig0020633:71757-71776 Msa1384020:CDS 40.0%
GTGGGAATGATATCCAGAAT+CGG - tig0020633:71758-71777 Msa1384020:CDS 40.0%
TTCTGGATATCATTCCCACT+TGG + tig0020633:71759-71778 Msa1384010:three_prime_UTR 40.0%
!! GGTAGTGCTGTTTACACTTG+AGG + tig0020633:65803-65822 Msa1384010:five_prime_UTR 45.0%
TTAGGGGATTCGATGTTGGT+GGG - tig0020633:66102-66121 None:intergenic 45.0%
AACCTTAGGGGATTCGATGT+TGG - tig0020633:66106-66125 None:intergenic 45.0%
CGGATGTTGATGTGACTGAA+TGG + tig0020633:66300-66319 Msa1384010:CDS 45.0%
GAAAGGAGACATACTAGCAG+TGG + tig0020633:66322-66341 Msa1384010:CDS 45.0%
GGACTTGGATCAAAGAGGAT+TGG + tig0020633:66503-66522 Msa1384010:CDS 45.0%
!! AGGATTGGTTTGATCGGTCT+TGG + tig0020633:66518-66537 Msa1384010:CDS 45.0%
ACTGCACTGTATAAGGGTCT+TGG + tig0020633:66557-66576 Msa1384010:CDS 45.0%
ACTGTATAAGGGTCTTGGTG+AGG + tig0020633:66562-66581 Msa1384010:CDS 45.0%
!!! CTTGGTGATGTTTTGGTCTC+AGG + tig0020633:67282-67301 Msa1384010:intron 45.0%
!!! TGGTGATGTTTTGGTCTCAG+GGG + tig0020633:67284-67303 Msa1384010:intron 45.0%
ACCTCCAAGTGGATCTGTAA+AGG + tig0020633:67467-67486 Msa1384010:CDS 45.0%
ACCTTTACAGATCCACTTGG+AGG - tig0020633:67471-67490 None:intergenic 45.0%
TGGATCTGTAAAGGTCAAGC+TGG + tig0020633:67476-67495 Msa1384010:CDS 45.0%
! TGTAAAGGTCAAGCTGGCTT+TGG + tig0020633:67482-67501 Msa1384010:CDS 45.0%
!! AAGCTGGCTTTGGTTGGAAA+AGG + tig0020633:67492-67511 Msa1384010:CDS 45.0%
CCATTTAGTGGGATAAGGCT+TGG - tig0020633:67742-67761 None:intergenic 45.0%
! CCAAGCCTTATCCCACTAAA+TGG + tig0020633:67739-67758 Msa1384010:intron 45.0%
CTTATCCCACTAAATGGGTC+CGG + tig0020633:67745-67764 Msa1384010:intron 45.0%
!! AAGTTTTACGTTGGCTGTCG+AGG + tig0020633:67811-67830 Msa1384010:intron 45.0%
GTAAAAGGAGAGGGTTGTGT+TGG - tig0020633:67838-67857 None:intergenic 45.0%
TACAACATCAAGACTGGACC+TGG + tig0020633:68111-68130 Msa1384010:CDS 45.0%
! TTTTGCAGCGCCTAAAACTG+CGG - tig0020633:68178-68197 None:intergenic 45.0%
TCAAATCAAACCTCTTGGGG+TGG + tig0020633:68206-68225 Msa1384010:CDS 45.0%
TGATCAGTGGAACAGGTATG+AGG + tig0020633:68543-68562 Msa1384010:CDS 45.0%
GTGAACAACACTGATGCTGA+GGG + tig0020633:69097-69116 Msa1384010:CDS 45.0%
! AGCACTTGCTAGGCAAATCT+TGG - tig0020633:69538-69557 None:intergenic 45.0%
TGCCAATAGAGGAAAGCTAC+TGG + tig0020633:70084-70103 Msa1384010:CDS 45.0%
GCCAATAGAGGAAAGCTACT+GGG + tig0020633:70085-70104 Msa1384010:CDS 45.0%
TCCCAGTAGCTTTCCTCTAT+TGG - tig0020633:70089-70108 None:intergenic 45.0%
GAAATCAGGAGTGGCTGATA+TGG + tig0020633:70115-70134 Msa1384010:CDS 45.0%
GTGGCTGATATGGTAAACAC+TGG + tig0020633:70125-70144 Msa1384010:CDS 45.0%
GCTGATATGGTAAACACTGG+TGG + tig0020633:70128-70147 Msa1384010:CDS 45.0%
! TGCTGCTCTTTTCCTGAAAC+AGG + tig0020633:70172-70191 Msa1384010:CDS 45.0%
ATTAAGCACGCACCTGTTTC+AGG - tig0020633:70187-70206 None:intergenic 45.0%
TCCAAGTGATTGTGTGCCAT+TGG + tig0020633:70330-70349 Msa1384010:intron 45.0%
TCCAATGGCACACAATCACT+TGG - tig0020633:70334-70353 None:intergenic 45.0%
TGGTTGCATATTGACATGGC+TGG + tig0020633:70532-70551 Msa1384010:CDS 45.0%
ATTTGGCGTTGCTACTCTAG+TGG + tig0020633:70591-70610 Msa1384010:CDS 45.0%
CGTTGCTACTCTAGTGGAAT+GGG + tig0020633:70597-70616 Msa1384010:CDS 45.0%
!! TTGATGGTGGATGGAAAAGG+TGG + tig0020633:70752-70771 Msa1384010:three_prime_UTR 45.0%
AAACACTACTGGAGCTACGT+AGG - tig0020633:70893-70912 None:intergenic 45.0%
CGGGAAGAAGAAAACACTAC+TGG - tig0020633:70904-70923 None:intergenic 45.0%
! CGCAGTGTCTTCTTTTGCAA+AGG + tig0020633:70939-70958 Msa1384010:three_prime_UTR 45.0%
TCGGCCATCAGTAGTTCAAA+TGG - tig0020633:71099-71118 None:intergenic 45.0%
CTATCATCTCGAGAAGCAAG+AGG + tig0020633:71236-71255 Msa1384010:three_prime_UTR 45.0%
CGACATTCAGCTCATGTCAA+AGG - tig0020633:71307-71326 Msa1384020:CDS 45.0%
AATGTCGAGATCAGTTTCCC+CGG + tig0020633:71320-71339 Msa1384010:three_prime_UTR 45.0%
! CGTTCTTCGAAGTGTCTCTT+TGG - tig0020633:71380-71399 Msa1384020:intron 45.0%
AAGAGACACTTCGAAGAACG+TGG + tig0020633:71380-71399 Msa1384010:three_prime_UTR 45.0%
TCTATGCTTGCATGCTTGGT+TGG - tig0020633:71455-71474 Msa1384020:intron 45.0%
ATGGTCTATGCTTGCATGCT+TGG - tig0020633:71459-71478 Msa1384020:intron 45.0%
GACAATTGGGCCAAGTTCTA+TGG - tig0020633:71478-71497 Msa1384020:CDS 45.0%
GATTCCAGCACTTGAGCATA+TGG + tig0020633:71512-71531 Msa1384010:three_prime_UTR 45.0%
! ACATGACTTGTATGTGCCCT+CGG - tig0020633:71563-71582 Msa1384020:CDS 45.0%
CAAATGTTGTTCGCGCTCAT+AGG - tig0020633:71587-71606 Msa1384020:CDS 45.0%
TTCATGAACATGCGCCAAGT+GGG - tig0020633:71776-71795 None:intergenic 45.0%
ACTGAGAGTTGAATCTCTCG+AGG + tig0020633:71898-71917 Msa1384010:three_prime_UTR 45.0%
!! TAAAAAAAAAAAAAAACAAA+TGG - tig0020633:70972-70991 None:intergenic 5.0%
TAGACTCTCCCACACCCTAA+TGG + tig0020633:65915-65934 Msa1384010:exon 50.0%
AGAAGCTATGGCCGCCATTA+GGG - tig0020633:65932-65951 None:intergenic 50.0%
TAGGGGATTCGATGTTGGTG+GGG - tig0020633:66101-66120 None:intergenic 50.0%
CTTAGGGGATTCGATGTTGG+TGG - tig0020633:66103-66122 None:intergenic 50.0%
CACCAACATCGAATCCCCTA+AGG + tig0020633:66101-66120 Msa1384010:CDS 50.0%
CGTGGGCTTGAATTGTGCTA+GGG + tig0020633:66978-66997 Msa1384010:intron 50.0%
GTGGGCTTGAATTGTGCTAG+GGG + tig0020633:66979-66998 Msa1384010:intron 50.0%
TCTTGGAACGGGACCTGAAT+TGG + tig0020633:67081-67100 Msa1384010:CDS 50.0%
CCTGGTGTGAGAACATTAGC+AGG - tig0020633:67175-67194 None:intergenic 50.0%
CCTGCTAATGTTCTCACACC+AGG + tig0020633:67172-67191 Msa1384010:CDS 50.0%
!!! TGTTTTGGTCTCAGGGGTGT+TGG + tig0020633:67290-67309 Msa1384010:intron 50.0%
!! GTTGGCAGAAGAGGCATCTA+AGG + tig0020633:67308-67327 Msa1384010:CDS 50.0%
AAAACGAGGAGGATTTGCCG+AGG - tig0020633:67430-67449 None:intergenic 50.0%
!! AAGGTCAAGCTGGCTTTGGT+TGG + tig0020633:67486-67505 Msa1384010:CDS 50.0%
CGGACCCATTTAGTGGGATA+AGG - tig0020633:67747-67766 None:intergenic 50.0%
TGTAGCCGGACCCATTTAGT+GGG - tig0020633:67753-67772 None:intergenic 50.0%
ATGTAGCCGGACCCATTTAG+TGG - tig0020633:67754-67773 None:intergenic 50.0%
ACTAAATGGGTCCGGCTACA+TGG + tig0020633:67753-67772 Msa1384010:intron 50.0%
CAAGGCTGGGTAAAAGGAGA+GGG - tig0020633:67847-67866 None:intergenic 50.0%
! CTCTCCTTTTACCCAGCCTT+GGG + tig0020633:67846-67865 Msa1384010:intron 50.0%
GGTGGCTACAACATCAAGAC+TGG + tig0020633:68105-68124 Msa1384010:CDS 50.0%
!! TTAGGCGCTGCAAAAGCACT+TGG + tig0020633:68183-68202 Msa1384010:CDS 50.0%
AATCAAACCTCTTGGGGTGG+AGG + tig0020633:68209-68228 Msa1384010:CDS 50.0%
GAAGCTGTGACAACATCTCC+AGG - tig0020633:68569-68588 None:intergenic 50.0%
GGTGAACAACACTGATGCTG+AGG + tig0020633:69096-69115 Msa1384010:intron 50.0%
!! TGCCTAGCAAGTGCTGACTT+TGG + tig0020633:69543-69562 Msa1384010:intron 50.0%
GGGCATGTGTAGTTGCTCTT+GGG + tig0020633:69726-69745 Msa1384010:CDS 50.0%
AAGCTAAACTCGGGAGAGAC+TGG + tig0020633:69921-69940 Msa1384010:intron 50.0%
!! TTGGAAGCTTCTGAGGTGAG+TGG + tig0020633:70044-70063 Msa1384010:CDS 50.0%
!! TGGAAGCTTCTGAGGTGAGT+GGG + tig0020633:70045-70064 Msa1384010:CDS 50.0%
AGGTGAGTGGGGAGAAACTA+TGG + tig0020633:70057-70076 Msa1384010:CDS 50.0%
TGAGTGGGGAGAAACTATGG+AGG + tig0020633:70060-70079 Msa1384010:CDS 50.0%
ACTATGGAGGCTGCCAATAG+AGG + tig0020633:70073-70092 Msa1384010:CDS 50.0%
GTAAACACTGGTGGTAGACC+AGG + tig0020633:70137-70156 Msa1384010:CDS 50.0%
CGCTTCTTGTCATTCCACAC+AGG - tig0020633:70559-70578 None:intergenic 50.0%
GCGTTGCTACTCTAGTGGAA+TGG + tig0020633:70596-70615 Msa1384010:CDS 50.0%
! GTCTTCTTTTGCAAAGGGGG+TGG + tig0020633:70945-70964 Msa1384010:three_prime_UTR 50.0%
AGGGACCAATGTGCTTCCTA+CGG + tig0020633:71058-71077 Msa1384010:three_prime_UTR 50.0%
GATAGATTGCAGCACTCCGT+AGG - tig0020633:71077-71096 None:intergenic 50.0%
CTTGCATGCTTGGTTGGAGT+GGG - tig0020633:71449-71468 Msa1384020:intron 50.0%
!! TTGCTTTGAGAGTGACACCG+AGG + tig0020633:71543-71562 Msa1384010:three_prime_UTR 50.0%
!! TGCTTTGAGAGTGACACCGA+GGG + tig0020633:71544-71563 Msa1384010:three_prime_UTR 50.0%
CTTCATGAACATGCGCCAAG+TGG - tig0020633:71777-71796 None:intergenic 50.0%
CACTTGGCGCATGTTCATGA+AGG + tig0020633:71775-71794 Msa1384010:three_prime_UTR 50.0%
GAGAGTTGAATCTCTCGAGG+AGG + tig0020633:71901-71920 Msa1384010:three_prime_UTR 50.0%
ACTCTCCCACACCCTAATGG+CGG + tig0020633:65918-65937 Msa1384010:exon 55.0%
TATGGCCGCCATTAGGGTGT+GGG - tig0020633:65926-65945 None:intergenic 55.0%
CAGAAGCTATGGCCGCCATT+AGG - tig0020633:65933-65952 None:intergenic 55.0%
CAGTCACGTGACACCACTCT+CGG + tig0020633:66066-66085 Msa1384010:CDS 55.0%
GCGTGGGCTTGAATTGTGCT+AGG + tig0020633:66977-66996 Msa1384010:intron 55.0%
AATTGTGCTAGGGGCTGTGC+TGG + tig0020633:66988-67007 Msa1384010:intron 55.0%
ATTGTGCTAGGGGCTGTGCT+GGG + tig0020633:66989-67008 Msa1384010:intron 55.0%
GGCTGCAGCAACACCTAGAT+AGG - tig0020633:67409-67428 None:intergenic 55.0%
!! TCTAGGTGTTGCTGCAGCCT+CGG + tig0020633:67410-67429 Msa1384010:CDS 55.0%
CCAAGGCTGGGTAAAAGGAG+AGG - tig0020633:67848-67867 None:intergenic 55.0%
! CCTCTCCTTTTACCCAGCCT+TGG + tig0020633:67845-67864 Msa1384010:intron 55.0%
CAGTCCCAAGGCTGGGTAAA+AGG - tig0020633:67853-67872 None:intergenic 55.0%
! CTTTTACCCAGCCTTGGGAC+TGG + tig0020633:67851-67870 Msa1384010:intron 55.0%
GTCAAGCATAGCCAGTCCCA+AGG - tig0020633:67865-67884 None:intergenic 55.0%
!! GGGACTGGCTATGCTTGACA+AGG + tig0020633:67866-67885 Msa1384010:intron 55.0%
! GGTGGTTCAGCCGCAGTTTT+AGG + tig0020633:68165-68184 Msa1384010:CDS 55.0%
TGACTAACCTCCACCCCAAG+AGG - tig0020633:68219-68238 None:intergenic 55.0%
!!! TTCTGGTGGCTGCTTTTCCG+TGG + tig0020633:68429-68448 Msa1384010:intron 55.0%
AGTGGAACAGGTATGAGGCC+TGG + tig0020633:68548-68567 Msa1384010:CDS 55.0%
TGCTGAGGGAAGACTCACAC+TGG + tig0020633:69111-69130 Msa1384010:CDS 55.0%
ACTCACACTGGCAGATGCTC+TGG + tig0020633:69123-69142 Msa1384010:CDS 55.0%
GGCCAAAGTCAGCACTTGCT+AGG - tig0020633:69548-69567 None:intergenic 55.0%
GGGGCATGTGTAGTTGCTCT+TGG + tig0020633:69725-69744 Msa1384010:CDS 55.0%
!! GGAAGCTTCTGAGGTGAGTG+GGG + tig0020633:70046-70065 Msa1384010:CDS 55.0%
AACACTGGTGGTAGACCAGG+TGG + tig0020633:70140-70159 Msa1384010:CDS 55.0%
GCAGCAGTGATAGAACCACC+TGG - tig0020633:70158-70177 None:intergenic 55.0%
! TTGACATGGCTGGTCCTGTG+TGG + tig0020633:70542-70561 Msa1384010:CDS 55.0%
AAGCGCTCAGCGACAGGATT+TGG + tig0020633:70574-70593 Msa1384010:CDS 55.0%
! GCACTCCGTAGGAAGCACAT+TGG - tig0020633:71066-71085 None:intergenic 55.0%
GCTTGCATGCTTGGTTGGAG+TGG - tig0020633:71450-71469 Msa1384020:intron 55.0%
CTATGGCCGCCATTAGGGTG+TGG - tig0020633:65927-65946 None:intergenic 60.0%
! CGATGTTGGTGGGGTGAGTG+AGG - tig0020633:66092-66111 None:intergenic 60.0%
CGCAGCTGCTAAGTCTGCTC+AGG + tig0020633:66592-66611 Msa1384010:CDS 60.0%
!! CTCAGGGGTGTTGGCAGAAG+AGG + tig0020633:67299-67318 Msa1384010:intron 60.0%
GCATAGCCAGTCCCAAGGCT+GGG - tig0020633:67860-67879 None:intergenic 60.0%
AGCATAGCCAGTCCCAAGGC+TGG - tig0020633:67861-67880 None:intergenic 60.0%
GCTCTTGGGCCCTCAATTGC+AGG + tig0020633:69740-69759 Msa1384010:CDS 60.0%
! GACAGCTGTGTTGGGTACCG+TGG + tig0020633:70256-70275 Msa1384010:intron 60.0%
! CTGTGTTGGGTACCGTGGAG+TGG + tig0020633:70261-70280 Msa1384010:intron 60.0%
!! GACAAGAAGCGCTCAGCGAC+AGG + tig0020633:70568-70587 Msa1384010:CDS 60.0%
GGGGTGAGTGAGGCCGAGAG+TGG - tig0020633:66082-66101 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020633 gene 65723 71932 65723 ID=Msa1384010;Name=Msa1384010
tig0020633 mRNA 65723 71932 65723 ID=Msa1384010-mRNA-1;Parent=Msa1384010;Name=Msa1384010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=211|1|1|1|1|1|10|1293|567
tig0020633 exon 65723 66122 65723 ID=Msa1384010-mRNA-1:exon:8862;Parent=Msa1384010-mRNA-1
tig0020633 exon 66284 66698 66284 ID=Msa1384010-mRNA-1:exon:8863;Parent=Msa1384010-mRNA-1
tig0020633 exon 66999 67193 66999 ID=Msa1384010-mRNA-1:exon:8864;Parent=Msa1384010-mRNA-1
tig0020633 exon 67304 67529 67304 ID=Msa1384010-mRNA-1:exon:8865;Parent=Msa1384010-mRNA-1
tig0020633 exon 68104 68230 68104 ID=Msa1384010-mRNA-1:exon:8866;Parent=Msa1384010-mRNA-1
tig0020633 exon 68512 68607 68512 ID=Msa1384010-mRNA-1:exon:8867;Parent=Msa1384010-mRNA-1
tig0020633 exon 69097 69174 69097 ID=Msa1384010-mRNA-1:exon:8868;Parent=Msa1384010-mRNA-1
tig0020633 exon 69701 69761 69701 ID=Msa1384010-mRNA-1:exon:8869;Parent=Msa1384010-mRNA-1
tig0020633 exon 70006 70193 70006 ID=Msa1384010-mRNA-1:exon:8870;Parent=Msa1384010-mRNA-1
tig0020633 exon 70511 71932 70511 ID=Msa1384010-mRNA-1:exon:8871;Parent=Msa1384010-mRNA-1
tig0020633 five_prime_UTR 65723 65933 65723 ID=Msa1384010-mRNA-1:five_prime_utr;Parent=Msa1384010-mRNA-1
tig0020633 CDS 65934 66122 65934 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 66284 66698 66284 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 66999 67193 66999 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 67304 67529 67304 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 68104 68230 68104 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 68512 68607 68512 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 69097 69174 69097 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 69701 69761 69701 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 70006 70193 70006 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 CDS 70511 70639 70511 ID=Msa1384010-mRNA-1:cds;Parent=Msa1384010-mRNA-1
tig0020633 three_prime_UTR 70640 71932 70640 ID=Msa1384010-mRNA-1:three_prime_utr;Parent=Msa1384010-mRNA-1
Gene Sequence

>Msa1384010

ATGGCGGCCATAGCTTCTGCCATTGTTATTGCTTTCTCAAAATCTTCCTCTTCTTCTCTCTTTCTCACTTCGCGTATTCGCTTTGCTTCATTTCCTAAGCGAAGCTTTCATTCAACGACGAAGCTCATGTCTCAGTCACGTGACACCACTCTCGGCCTCACTCACCCCACCAACATCGAATCCCCTAAGATCTCTTTTTCTGCTACGGATGTTGATGTGACTGAATGGAAAGGAGACATACTAGCAGTGGGTGTTACTGAGAAAGATTTAACAAGAGATGCTAAATCGAGATTCGAGAATTCGATTTTGAACAAGATTGATTTGAAGTTGGATGGTTTGTTATCTGAAGCTTCTTCTGAAGAGGATTTCTCTGGTAAAGTTGGTCAATCAACCGTTGTTAGGATTAAAGGACTTGGATCAAAGAGGATTGGTTTGATCGGTCTTGGTCAGTCACCTTCAACTACTGCACTGTATAAGGGTCTTGGTGAGGCTGTCGTCGCAGCTGCTAAGTCTGCTCAGGCAAGCAATGTTGCTATTGTTCTTGCCTCTTCTGAAGGACTTTCTTCACAATCAAAGCTTAGCACTGCTTATGCAATTGCATCTGGGGCTGTGCTGGGATTATTTGAAGATCAAAGATACAAGTCAGAATCAAAGAAACCAGCAGTTAGATCCATTGACATTATTGGTCTTGGAACGGGACCTGAATTGGAGAAAAAGCTCAAGTATGCTGGAGATGTTTCTTCTGGAATAATTTTTGGAAGGGAGCTTGTAAACTCTCCTGCTAATGTTCTCACACCAGGGGTGTTGGCAGAAGAGGCATCTAAGGTTGCTTCCACCTATAGTGATGTTTTCACCGCTAAAATATTAGATGCTGATCAGTGCAAGGAATTGAAAATGGGGTCCTATCTAGGTGTTGCTGCAGCCTCGGCAAATCCTCCTCGTTTTATCCATCTTACTTACAAACCTCCAAGTGGATCTGTAAAGGTCAAGCTGGCTTTGGTTGGAAAAGGTTTGACTTTTGATAGTGGTGGCTACAACATCAAGACTGGACCTGGCTGTTCAATTGAACTCATGAAATTTGATATGGGTGGTTCAGCCGCAGTTTTAGGCGCTGCAAAAGCACTTGGTCAAATCAAACCTCTTGGGGTGGAGGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATCAGTGGAACAGGTATGAGGCCTGGAGATGTTGTCACAGCTTCAAATGGAAAAACTATTGAGGTGAACAACACTGATGCTGAGGGAAGACTCACACTGGCAGATGCTCTGGTATATGCTTGTAACCAAGGTGTTGAAAAGATTATTGATTTGGCAACCTTAACTGGGGCATGTGTAGTTGCTCTTGGGCCCTCAATTGCAGGTGTGTTTTCACCCAATGATGAACTGGTAAAAGAAGTTTTGGAAGCTTCTGAGGTGAGTGGGGAGAAACTATGGAGGCTGCCAATAGAGGAAAGCTACTGGGAATCAATGAAATCAGGAGTGGCTGATATGGTAAACACTGGTGGTAGACCAGGTGGTTCTATCACTGCTGCTCTTTTCCTGAAACAGTTTGTTGATGAAAAGGTTCAATGGTTGCATATTGACATGGCTGGTCCTGTGTGGAATGACAAGAAGCGCTCAGCGACAGGATTTGGCGTTGCTACTCTAGTGGAATGGGTTTTGAAAAATTCTTCTTAA
Protein sequence

>Msa1384010

MAAIASAIVIAFSKSSSSSLFLTSRIRFASFPKRSFHSTTKLMSQSRDTTLGLTHPTNIESPKISFSATDVDVTEWKGDILAVGVTEKDLTRDAKSRFENSILNKIDLKLDGLLSEASSEEDFSGKVGQSTVVRIKGLGSKRIGLIGLGQSPSTTALYKGLGEAVVAAAKSAQASNVAIVLASSEGLSSQSKLSTAYAIASGAVLGLFEDQRYKSESKKPAVRSIDIIGLGTGPELEKKLKYAGDVSSGIIFGRELVNSPANVLTPGVLAEEASKVASTYSDVFTAKILDADQCKELKMGSYLGVAAASANPPRFIHLTYKPPSGSVKVKLALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVLGAAKALGQIKPLGVEVHFIVAACENMISGTGMRPGDVVTASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIIDLATLTGACVVALGPSIAGVFSPNDELVKEVLEASEVSGEKLWRLPIEESYWESMKSGVADMVNTGGRPGGSITAALFLKQFVDEKVQWLHIDMAGPVWNDKKRSATGFGVATLVEWVLKNSS*