AlfalfaGEDB | Msa0347470

M. sativa cultivar zhongmu-4 / Msa0347470

KEGG: -
GO: -
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347470	XP_039688236.1	90.634	363	17	1	1	346	120	482	0.0	675

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347470	sp\|D3UAG7\|U88F3_PYRCO	56.164	365	133	8	1	342	119	479	1.08e-128	379

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347470	Q2PEP3	82.320	362	47	1	1	345	122	483	0.0	604

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0347470	Msa0394120	0.832330	1.005522e-55	-8.615850e-47
Msa0347470	Msa0441920	0.898765	3.850990e-77	-8.615850e-47
Msa0347470	Msa0489570	0.993600	7.174297e-201	-8.615850e-47
Msa0347470	Msa0863990	0.800900	1.159943e-48	-8.615850e-47
Msa0347470	Msa1030810	0.809080	2.257848e-50	-8.615850e-47
Msa0347470	Msa1069890	0.820059	8.376608e-53	-8.615850e-47
Msa0347470	Msa1256060	0.805498	1.296695e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347470	MtrunA17_Chr3g0079731	80.663	362	52	2	1	344	120	481	0.0	603
Msa0347470	MtrunA17_Chr3g0079711	94.764	191	10	0	156	346	1	191	2.10e-130	370
Msa0347470	MtrunA17_Chr3g0079721	86.391	169	6	1	1	152	120	288	1.12e-101	301
Msa0347470	MtrunA17_Chr6g0462551	45.810	358	163	7	5	346	125	467	2.82e-97	296
Msa0347470	MtrunA17_Chr6g0462541	44.875	361	160	8	5	346	126	466	2.64e-93	286
Msa0347470	MtrunA17_Chr6g0462521	44.857	350	162	8	5	343	121	450	1.79e-91	281
Msa0347470	MtrunA17_Chr6g0462571	41.944	360	173	6	5	346	123	464	2.27e-91	281
Msa0347470	MtrunA17_Chr6g0462531	42.192	365	171	6	2	346	123	467	3.59e-89	275
Msa0347470	MtrunA17_Chr6g0486251	38.275	371	179	8	1	343	116	464	1.22e-76	243
Msa0347470	MtrunA17_Chr6g0486201	38.275	371	179	8	1	343	116	464	1.22e-76	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347470	AT3G16520.3	44.384	365	158	11	1	344	120	460	1.10e-96	295
Msa0347470	AT3G16520.2	44.126	349	150	11	1	328	120	444	1.75e-90	278
Msa0347470	AT3G16520.1	44.126	349	150	11	1	328	120	444	3.10e-90	278
Msa0347470	AT4G01070.1	38.398	362	194	7	1	344	118	468	5.42e-79	249
Msa0347470	AT1G01420.1	37.673	361	195	7	1	343	118	466	3.34e-76	242
Msa0347470	AT1G01420.2	37.673	361	195	7	1	343	121	469	3.60e-76	242
Msa0347470	AT1G01390.1	38.056	360	196	6	1	343	118	467	1.58e-70	228
Msa0347470	AT1G01390.2	38.056	360	196	6	1	343	135	484	2.74e-70	228
Msa0347470	AT3G21800.1	37.265	373	186	13	1	341	117	473	9.48e-69	223
Msa0347470	AT3G21750.1	37.097	372	197	10	1	346	111	471	4.22e-68	221

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Find 128 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGCACCGTCTTCAA+CGG	0.570679	3_1:+8530333	None:intergenic
AAACAAGTTCACGATACAAC+AGG	0.444607	3_1:-8529673	Msa0347470:CDS
AAATAGCTGAAGGGTTGGAG+AGG	0.551079	3_1:-8529753	Msa0347470:CDS
AACAAGTTCACGATACAACA+GGG	0.601950	3_1:-8529672	Msa0347470:CDS
AACCAAAGAGAGGGGCCTGG+TGG	0.650267	3_1:-8529605	Msa0347470:CDS
AAGCCGAGGATCATTCTCGC+TGG	0.622790	3_1:-8529788	Msa0347470:CDS
AAGTACACCACGCTTCTACT+CGG	0.585941	3_1:+8529820	None:intergenic
AAGTCACTGTGGCTGGAACT+CGG	0.545392	3_1:-8529524	Msa0347470:CDS
AAGTGAAGAAATAGTAAACA+GGG	0.642613	3_1:+8530614	None:intergenic
AATAATATAGAGGCAGAATC+AGG	0.423277	3_1:+8529063	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGTGAAGAAATAGTAAAC+AGG	+	chr3_1:8529073-8529092	None:intergenic	30.0%
AGACATACAAATAGATTGCA+TGG	+	chr3_1:8529686-8529705	None:intergenic	30.0%
AATTGAAGGAAATAGCTGAA+GGG	-	chr3_1:8529921-8529940	Msa0347470:intron	30.0%
AATAATATAGAGGCAGAATC+AGG	+	chr3_1:8530623-8530642	None:intergenic	30.0%
GAAGTGAAGAAATAGTAAAC+AGG	+	chr3_1:8529073-8529092	None:intergenic	30.0%
AGACATACAAATAGATTGCA+TGG	+	chr3_1:8529686-8529705	None:intergenic	30.0%
AATTGAAGGAAATAGCTGAA+GGG	-	chr3_1:8529921-8529940	Msa0347470:intron	30.0%
AATAATATAGAGGCAGAATC+AGG	+	chr3_1:8530623-8530642	None:intergenic	30.0%
TTTCTGTGAGCATCTTTCTA+TGG	-	chr3_1:8529273-8529292	Msa0347470:CDS	35.0%
GGTGAATACATTTCGTGAAT+TGG	-	chr3_1:8529309-8529328	Msa0347470:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	8529025	8530680	8529025	ID=Msa0347470;Name=Msa0347470
chr3_1	mRNA	8529025	8530680	8529025	ID=Msa0347470-mRNA-1;Parent=Msa0347470;Name=Msa0347470-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|0.5\|0.33\|1\|0.5\|0.33\|3\|191\|346
chr3_1	exon	8529025	8529889	8529025	ID=Msa0347470-mRNA-1:exon:2493;Parent=Msa0347470-mRNA-1
chr3_1	exon	8530263	8530422	8530263	ID=Msa0347470-mRNA-1:exon:2492;Parent=Msa0347470-mRNA-1
chr3_1	exon	8530474	8530680	8530474	ID=Msa0347470-mRNA-1:exon:2491;Parent=Msa0347470-mRNA-1
chr3_1	CDS	8530474	8530680	8530474	ID=Msa0347470-mRNA-1:cds;Parent=Msa0347470-mRNA-1
chr3_1	CDS	8530263	8530422	8530263	ID=Msa0347470-mRNA-1:cds;Parent=Msa0347470-mRNA-1
chr3_1	CDS	8529216	8529889	8529216	ID=Msa0347470-mRNA-1:cds;Parent=Msa0347470-mRNA-1
chr3_1	three_prime_UTR	8529025	8529215	8529025	ID=Msa0347470-mRNA-1:three_prime_utr;Parent=Msa0347470-mRNA-1

Gene Sequence

>Msa0347470

ATGTTTTGCACTTCTGCCATGGAAGTTGCTTCCACCATGGGAATCCCTGTTTACTATTTCTTCACTTCTGGAGCTGCTGTTTTGGCACTGTGTTCCTACTTCCCGAAAATTCACAGCGAAACGGCAGTATCGTTCAAGGAAATGGTTGGAGTTGAGATTGTGATGCCGGGGAATGCGCCGTTGAATGCGGCGTTGATGCCGGGACCACATCTTTCTATGGCAAAGGGAATTGTGGTGAATACATTTCGTGAATTGGAAGTTGTGGCGGTTAAGGCCGTTGAAGACGGTGCGTGTTTTCCGGATCTCAAACGAAGTCCTCCTCCCGTTTACTGCATTGGGCCATTGATTGCTGACCCTCAACAATCAGATGAAGCAAGCGACAGCAAAGATTGCTTGTCATGGCTAGATAAACAACCGAGTAGAAGCGTGGTGTACTTGTGTTTTGGAAGCCGAGGATCATTCTCGCTGGCACAATTGAAGGAAATAGCTGAAGGGTTGGAGAGGAGTGGACACAGATTCTTATGGGTTGTGAAGAGGCCACTCCAAGAACATCTTGGAACGAAACAAGTTCACGATACAACAGGGGAGTTTGAGTTGGGTTCTGTTTTGCCAAGTGGGTTTATAGAGAGAACCAAAGAGAGGGGCCTGGTGGTGAACTCGTGGGCCCCACAAGTCAAGGTTCTGAGTCGCGAATCGGTTGGTGGGTTTGCAAGTCACTGTGGCTGGAACTCGGTGTTGGAAGGAGTGGTTGCTGGTGTGCCAATGATTGCATGGCCATTGCATGCAGAGCAGCATGTTAATAGGAATGTGATGGTGAAGGACATGAAGGTGGCTGTTGCGGTGGAGCAAAGGGAAGGCGATGGGTTTGTGACCGGAGAGGAAGTGGAGAAGAGGGTGAGAGAGTTGATGGAATTTGAGAGAGGGAAAGAGATAAGAGAGAGGAGTTCGAAGTTCAAAGACATGGCTAGGGATGCATTTGGAGAATTTGGGTCATCCACAAAAGCATTAGCCAACTTGGTTCAAACATGGAATGATAACTAG

Protein sequence

>Msa0347470

MFCTSAMEVASTMGIPVYYFFTSGAAVLALCSYFPKIHSETAVSFKEMVGVEIVMPGNAPLNAALMPGPHLSMAKGIVVNTFRELEVVAVKAVEDGACFPDLKRSPPPVYCIGPLIADPQQSDEASDSKDCLSWLDKQPSRSVVYLCFGSRGSFSLAQLKEIAEGLERSGHRFLWVVKRPLQEHLGTKQVHDTTGEFELGSVLPSGFIERTKERGLVVNSWAPQVKVLSRESVGGFASHCGWNSVLEGVVAGVPMIAWPLHAEQHVNRNVMVKDMKVAVAVEQREGDGFVTGEEVEKRVRELMEFERGKEIRERSSKFKDMARDAFGEFGSSTKALANLVQTWNDN*