Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347560 | XP_003598276.1 | 93.916 | 526 | 32 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347560 | sp|Q9SUC6|BBE22_ARATH | 56.093 | 517 | 215 | 7 | 14 | 522 | 17 | 529 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347560 | G7J0C2 | 93.916 | 526 | 32 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1004 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0347560 | Msa0442170 | 0.908485 | 1.624635e-81 | -8.615850e-47 |
| Msa0347560 | Msa0489680 | 0.947438 | 6.723929e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347560 | MtrunA17_Chr3g0079791 | 93.916 | 526 | 32 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1004 |
| Msa0347560 | MtrunA17_Chr3g0079801 | 94.106 | 526 | 31 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1003 |
| Msa0347560 | MtrunA17_Chr3g0079831 | 87.429 | 525 | 64 | 1 | 1 | 525 | 17 | 539 | 0.0 | 927 |
| Msa0347560 | MtrunA17_Chr2g0292971 | 53.620 | 511 | 226 | 6 | 19 | 522 | 23 | 529 | 0.0 | 580 |
| Msa0347560 | MtrunA17_Chr4g0051421 | 55.075 | 532 | 222 | 7 | 3 | 520 | 7 | 535 | 0.0 | 573 |
| Msa0347560 | MtrunA17_Chr4g0051421 | 54.562 | 537 | 226 | 8 | 2 | 524 | 545 | 1077 | 0.0 | 558 |
| Msa0347560 | MtrunA17_Chr4g0051211 | 57.204 | 465 | 189 | 4 | 69 | 523 | 8 | 472 | 0.0 | 570 |
| Msa0347560 | MtrunA17_Chr2g0293021 | 55.894 | 526 | 216 | 8 | 1 | 519 | 8 | 524 | 0.0 | 565 |
| Msa0347560 | MtrunA17_Chr2g0292991 | 56.250 | 528 | 219 | 8 | 1 | 523 | 8 | 528 | 0.0 | 564 |
| Msa0347560 | MtrunA17_Chr4g0051541 | 55.906 | 508 | 211 | 8 | 23 | 522 | 28 | 530 | 0.0 | 556 |
| Msa0347560 | MtrunA17_Chr4g0051381 | 52.562 | 527 | 240 | 5 | 4 | 522 | 11 | 535 | 0.0 | 552 |
| Msa0347560 | MtrunA17_Chr4g0051551 | 51.515 | 528 | 245 | 8 | 1 | 522 | 36 | 558 | 0.0 | 545 |
| Msa0347560 | MtrunA17_Chr2g0293121 | 49.237 | 524 | 258 | 5 | 4 | 522 | 3 | 523 | 0.0 | 545 |
| Msa0347560 | MtrunA17_Chr4g0051411 | 51.698 | 530 | 243 | 7 | 2 | 520 | 6 | 533 | 0.0 | 538 |
| Msa0347560 | MtrunA17_Chr4g0051441 | 49.113 | 564 | 241 | 8 | 2 | 524 | 58 | 616 | 0.0 | 530 |
| Msa0347560 | MtrunA17_Chr2g0293161 | 48.968 | 533 | 256 | 9 | 1 | 522 | 5 | 532 | 0.0 | 523 |
| Msa0347560 | MtrunA17_Chr2g0293191 | 49.071 | 538 | 253 | 10 | 1 | 522 | 31 | 563 | 0.0 | 522 |
| Msa0347560 | MtrunA17_Chr2g0293031 | 45.880 | 534 | 273 | 9 | 1 | 522 | 9 | 538 | 3.80e-166 | 481 |
| Msa0347560 | MtrunA17_Chr2g0293041 | 46.589 | 513 | 260 | 7 | 19 | 522 | 33 | 540 | 1.09e-164 | 478 |
| Msa0347560 | MtrunA17_Chr4g0028611 | 46.552 | 522 | 272 | 4 | 1 | 520 | 33 | 549 | 1.17e-162 | 473 |
| Msa0347560 | MtrunA17_Chr4g0048361 | 47.148 | 526 | 264 | 7 | 1 | 520 | 7 | 524 | 5.88e-162 | 470 |
| Msa0347560 | MtrunA17_Chr4g0048311 | 47.269 | 531 | 258 | 10 | 10 | 522 | 14 | 540 | 6.97e-161 | 468 |
| Msa0347560 | MtrunA17_Chr4g0046581 | 47.953 | 513 | 247 | 7 | 24 | 524 | 31 | 535 | 3.59e-160 | 466 |
| Msa0347560 | MtrunA17_Chr4g0048351 | 47.081 | 531 | 251 | 11 | 7 | 520 | 22 | 539 | 1.10e-159 | 465 |
| Msa0347560 | MtrunA17_Chr6g0457031 | 46.756 | 524 | 261 | 8 | 7 | 520 | 9 | 524 | 1.12e-159 | 465 |
| Msa0347560 | MtrunA17_Chr4g0051531 | 46.916 | 535 | 269 | 8 | 1 | 524 | 624 | 1154 | 2.10e-159 | 483 |
| Msa0347560 | MtrunA17_Chr4g0051531 | 47.409 | 521 | 254 | 10 | 13 | 520 | 25 | 538 | 3.83e-152 | 464 |
| Msa0347560 | MtrunA17_Chr6g0457061 | 46.947 | 524 | 260 | 8 | 7 | 520 | 9 | 524 | 3.92e-159 | 464 |
| Msa0347560 | MtrunA17_Chr3g0079821 | 88.362 | 232 | 27 | 0 | 295 | 526 | 1 | 232 | 8.83e-152 | 433 |
| Msa0347560 | MtrunA17_Chr2g0288611 | 47.174 | 460 | 235 | 5 | 70 | 524 | 12 | 468 | 5.02e-145 | 425 |
| Msa0347560 | MtrunA17_Chr4g0048331 | 45.567 | 406 | 201 | 7 | 119 | 520 | 2 | 391 | 8.22e-127 | 376 |
| Msa0347560 | MtrunA17_Chr1g0188271 | 43.579 | 475 | 257 | 7 | 54 | 519 | 60 | 532 | 1.19e-126 | 381 |
| Msa0347560 | MtrunA17_Chr2g0320381 | 76.812 | 69 | 12 | 1 | 164 | 232 | 48 | 112 | 1.46e-29 | 112 |
| Msa0347560 | MtrunA17_Chr2g0320371 | 91.111 | 45 | 4 | 0 | 122 | 166 | 1 | 45 | 8.09e-22 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347560 | AT4G20860.1 | 56.093 | 517 | 215 | 7 | 14 | 522 | 17 | 529 | 0.0 | 577 |
| Msa0347560 | AT5G44360.2 | 56.031 | 514 | 199 | 11 | 23 | 522 | 46 | 546 | 0.0 | 551 |
| Msa0347560 | AT5G44400.1 | 53.905 | 525 | 227 | 11 | 8 | 520 | 13 | 534 | 0.0 | 551 |
| Msa0347560 | AT5G44360.1 | 56.031 | 514 | 199 | 11 | 23 | 522 | 30 | 530 | 0.0 | 551 |
| Msa0347560 | AT2G34790.1 | 50.000 | 532 | 236 | 9 | 3 | 520 | 13 | 528 | 0.0 | 540 |
| Msa0347560 | AT5G44390.1 | 52.336 | 535 | 238 | 14 | 1 | 522 | 10 | 540 | 0.0 | 538 |
| Msa0347560 | AT1G30760.2 | 52.941 | 510 | 223 | 9 | 20 | 520 | 47 | 548 | 0.0 | 533 |
| Msa0347560 | AT1G30760.1 | 52.941 | 510 | 223 | 9 | 20 | 520 | 29 | 530 | 0.0 | 532 |
| Msa0347560 | AT5G44380.1 | 50.954 | 524 | 242 | 11 | 9 | 520 | 17 | 537 | 9.33e-170 | 491 |
| Msa0347560 | AT5G44380.2 | 50.954 | 524 | 242 | 11 | 9 | 520 | 57 | 577 | 1.94e-169 | 492 |
| Msa0347560 | AT4G20820.1 | 47.195 | 517 | 258 | 9 | 8 | 520 | 19 | 524 | 1.04e-167 | 485 |
| Msa0347560 | AT5G44440.1 | 46.717 | 533 | 270 | 9 | 2 | 525 | 5 | 532 | 1.76e-167 | 485 |
| Msa0347560 | AT1G26420.1 | 47.637 | 529 | 258 | 8 | 1 | 520 | 5 | 523 | 1.19e-166 | 483 |
| Msa0347560 | AT5G44440.2 | 46.717 | 533 | 270 | 9 | 2 | 525 | 75 | 602 | 3.81e-166 | 484 |
| Msa0347560 | AT1G26380.1 | 46.981 | 530 | 264 | 7 | 2 | 522 | 4 | 525 | 3.76e-162 | 471 |
| Msa0347560 | AT1G26410.1 | 49.791 | 478 | 229 | 6 | 48 | 520 | 76 | 547 | 1.68e-161 | 470 |
| Msa0347560 | AT5G44410.1 | 46.226 | 530 | 269 | 8 | 1 | 522 | 8 | 529 | 8.71e-160 | 465 |
| Msa0347560 | AT1G26390.1 | 49.269 | 479 | 232 | 6 | 48 | 520 | 52 | 525 | 1.08e-159 | 465 |
| Msa0347560 | AT1G26400.1 | 47.093 | 516 | 265 | 6 | 8 | 519 | 10 | 521 | 1.46e-158 | 462 |
| Msa0347560 | AT1G30710.1 | 44.972 | 527 | 277 | 8 | 4 | 524 | 11 | 530 | 6.79e-157 | 458 |
| Msa0347560 | AT1G30700.1 | 46.503 | 529 | 269 | 8 | 2 | 522 | 4 | 526 | 1.15e-156 | 457 |
| Msa0347560 | AT1G34575.1 | 44.508 | 528 | 268 | 10 | 4 | 521 | 11 | 523 | 5.17e-156 | 456 |
| Msa0347560 | AT1G11770.1 | 43.503 | 531 | 289 | 8 | 4 | 526 | 6 | 533 | 3.13e-153 | 449 |
| Msa0347560 | AT1G01980.1 | 44.742 | 523 | 273 | 9 | 15 | 526 | 21 | 538 | 6.14e-153 | 448 |
| Msa0347560 | AT4G20840.1 | 44.379 | 507 | 271 | 7 | 22 | 522 | 34 | 535 | 5.86e-151 | 443 |
| Msa0347560 | AT4G20800.1 | 48.283 | 466 | 233 | 5 | 60 | 520 | 61 | 523 | 2.65e-150 | 441 |
| Msa0347560 | AT1G30730.1 | 44.509 | 519 | 279 | 6 | 8 | 521 | 10 | 524 | 9.63e-149 | 437 |
| Msa0347560 | AT4G20830.2 | 44.618 | 511 | 274 | 7 | 19 | 524 | 32 | 538 | 6.38e-147 | 433 |
| Msa0347560 | AT4G20830.1 | 44.597 | 509 | 273 | 7 | 19 | 522 | 32 | 536 | 1.09e-145 | 431 |
| Msa0347560 | AT1G30740.2 | 44.208 | 518 | 280 | 7 | 11 | 522 | 17 | 531 | 1.13e-145 | 429 |
| Msa0347560 | AT1G30740.1 | 44.208 | 518 | 280 | 7 | 11 | 522 | 14 | 528 | 1.17e-145 | 429 |
| Msa0347560 | AT2G34810.1 | 43.520 | 517 | 282 | 6 | 15 | 522 | 24 | 539 | 2.49e-143 | 424 |
| Msa0347560 | AT1G30720.1 | 41.829 | 514 | 290 | 6 | 13 | 521 | 16 | 525 | 1.76e-137 | 408 |
Find 117 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCTTTAACTTCAATATT+TGG | 0.122008 | 3_1:+8698942 | Msa0347560:three_prime_UTR |
| AGCACTTATAATATTTATTT+TGG | 0.156288 | 3_1:+8698690 | Msa0347560:three_prime_UTR |
| TTGGGGCATCAAGTACTTTA+AGG | 0.182488 | 3_1:+8698553 | Msa0347560:CDS |
| CTTAATTAAGTTGTTAATTC+AGG | 0.183749 | 3_1:-8698669 | None:intergenic |
| AAGCTGGTTTAGAAGGTATT+TGG | 0.194170 | 3_1:+8698219 | Msa0347560:CDS |
| GCTCACCTTATAGATGTAAA+TGG | 0.201621 | 3_1:+8697690 | Msa0347560:CDS |
| AATGAGAGTTTCCCTGAATT+AGG | 0.214946 | 3_1:+8698035 | Msa0347560:CDS |
| CACATTAGCATTACTTATAA+TGG | 0.248787 | 3_1:+8698262 | Msa0347560:CDS |
| TTGTCTTGCAACCCTAATTC+AGG | 0.255332 | 3_1:-8698047 | None:intergenic |
| CATCCACTTTATATGCTTGT+TGG | 0.273212 | 3_1:-8698405 | None:intergenic |
| CGATGAATCTGCTTGGATTC+AGG | 0.282488 | 3_1:+8696808 | Msa0347560:CDS |
| GGAGGTAGTGCTACTAGTTT+TGG | 0.283804 | 3_1:+8697765 | Msa0347560:CDS |
| GAGCTTTAACTTCAATATTT+GGG | 0.286998 | 3_1:+8698943 | Msa0347560:three_prime_UTR |
| AAGTGGATGAGAATGCTTTA+TGG | 0.287403 | 3_1:+8698419 | Msa0347560:CDS |
| GTTCAATTTAAGATAACATT+TGG | 0.293632 | 3_1:+8698983 | Msa0347560:three_prime_UTR |
| GAGCTGCATATTACAACTAT+AGG | 0.298398 | 3_1:+8698474 | Msa0347560:CDS |
| CTGCTTGAATTTCTGATTCA+TGG | 0.298655 | 3_1:-8696643 | None:intergenic |
| CTATTCAGCAAGAGTTCTAT+AGG | 0.301114 | 3_1:-8698134 | None:intergenic |
| CTTGATGAATTCAGCCATCT+TGG | 0.311842 | 3_1:-8696593 | None:intergenic |
| TTCAATTTAAGATAACATTT+GGG | 0.337017 | 3_1:+8698984 | Msa0347560:three_prime_UTR |
| CAATACTTGTGGATACAATA+TGG | 0.349912 | 3_1:-8696552 | None:intergenic |
| AGAGAGAGTTAAACTTGGTT+TGG | 0.351945 | 3_1:-8697977 | None:intergenic |
| ATGAGAGTTTCCCTGAATTA+GGG | 0.357011 | 3_1:+8698036 | Msa0347560:CDS |
| CACATCAGTGGAGGTGGCTT+TGG | 0.360702 | 3_1:+8697621 | Msa0347560:CDS |
| TCTAAACCAGCTTCTGGTAT+AGG | 0.365053 | 3_1:-8698209 | None:intergenic |
| TGAGCTTAGCTCAGTTGGTT+TGG | 0.367087 | 3_1:-8698776 | None:intergenic |
| TCTAAAGCAAGTAAAGTTCA+TGG | 0.367121 | 3_1:+8696866 | Msa0347560:CDS |
| GGTACTCAGAAGCAAGTGTT+TGG | 0.380263 | 3_1:+8698534 | Msa0347560:CDS |
| ATTCAGGCTGGTGCAACATT+AGG | 0.380469 | 3_1:+8696824 | Msa0347560:CDS |
| TTACTTATAATGGAACCTTA+TGG | 0.388867 | 3_1:+8698272 | Msa0347560:CDS |
| TTGTTCCAATGTTCTTTGAA+TGG | 0.398919 | 3_1:-8697847 | None:intergenic |
| TGGGGCATCAAGTACTTTAA+GGG | 0.402731 | 3_1:+8698554 | Msa0347560:CDS |
| ATACCTTCTAAACCAGCTTC+TGG | 0.406374 | 3_1:-8698215 | None:intergenic |
| ATACCAGAAGCTGGTTTAGA+AGG | 0.411336 | 3_1:+8698212 | Msa0347560:CDS |
| CTTGGAGACTTTGAAACATA+AGG | 0.412215 | 3_1:-8698452 | None:intergenic |
| CTTGTACAACATACAATATA+TGG | 0.415255 | 3_1:+8698352 | Msa0347560:CDS |
| AGCTGCATATTACAACTATA+GGG | 0.426482 | 3_1:+8698475 | Msa0347560:CDS |
| TGCATAATATATGCAAGGTC+CGG | 0.430117 | 3_1:-8698749 | None:intergenic |
| CATATTGTATCCACAAGTAT+TGG | 0.430537 | 3_1:+8696553 | Msa0347560:CDS |
| GTACTCAGAAGCAAGTGTTT+GGG | 0.433402 | 3_1:+8698535 | Msa0347560:CDS |
| GATGAGATCAATCATGATAA+AGG | 0.434881 | 3_1:-8696756 | None:intergenic |
| TCATTCAGTCTTCCACCATA+AGG | 0.436662 | 3_1:-8698287 | None:intergenic |
| TGGAGGTGGCTTTGGTACCT+TGG | 0.438981 | 3_1:+8697629 | Msa0347560:CDS |
| AAGTTTAACTCTCTCTTCCT+TGG | 0.446047 | 3_1:+8697984 | Msa0347560:CDS |
| CTATGTATTGCCACCTATGA+AGG | 0.446403 | 3_1:-8697884 | None:intergenic |
| CCTCATGAGCTTAGCTCAGT+TGG | 0.447530 | 3_1:-8698781 | None:intergenic |
| AGAATAGTTGCTCAAAATAG+TGG | 0.457619 | 3_1:+8697936 | Msa0347560:CDS |
| TCATTCTTGCATGGAAGATA+AGG | 0.459271 | 3_1:+8697790 | Msa0347560:CDS |
| CTCACCTTATAGATGTAAAT+GGG | 0.461407 | 3_1:+8697691 | Msa0347560:CDS |
| AATTCTTGATAGAAAATCAA+TGG | 0.470027 | 3_1:+8697716 | Msa0347560:CDS |
| TAAGGGAAACTTTAAGCGAT+TGG | 0.470910 | 3_1:+8698571 | Msa0347560:CDS |
| AACTATAGGGATCTTGATAT+AGG | 0.475447 | 3_1:+8698488 | Msa0347560:CDS |
| TTAATTAAGTTGTTAATTCA+GGG | 0.475592 | 3_1:-8698668 | None:intergenic |
| TGTCTTGCAACCCTAATTCA+GGG | 0.475992 | 3_1:-8698046 | None:intergenic |
| AAGACTGCATTGAAATGAGT+TGG | 0.478707 | 3_1:+8698069 | Msa0347560:CDS |
| ATGAGATCAATCATGATAAA+GGG | 0.478729 | 3_1:-8696755 | None:intergenic |
| TAAGTTGTTAATTCAGGGGA+GGG | 0.480193 | 3_1:-8698663 | None:intergenic |
| TATTCAGCAAGAGTTCTATA+GGG | 0.484064 | 3_1:-8698133 | None:intergenic |
| ATCTTGCCGATGAATCTGCT+TGG | 0.489037 | 3_1:+8696801 | Msa0347560:CDS |
| GAGCAACCAAGGTCCTTCAT+AGG | 0.491433 | 3_1:+8697871 | Msa0347560:CDS |
| TTCAGTGATTCCAATACTTG+TGG | 0.491607 | 3_1:-8696563 | None:intergenic |
| TTCAGAAAAGCTACTACCTA+TGG | 0.493468 | 3_1:-8696495 | None:intergenic |
| GCATAATATATGCAAGGTCC+GGG | 0.494408 | 3_1:-8698748 | None:intergenic |
| TGCTTGAATTTCTGATTCAT+GGG | 0.498893 | 3_1:-8696642 | None:intergenic |
| AAGACAGTCCTTCATAATCA+TGG | 0.503011 | 3_1:-8696718 | None:intergenic |
| TAGTTGTAATATGCAGCTCT+TGG | 0.503584 | 3_1:-8698470 | None:intergenic |
| AATCCAACAAGCATATAAAG+TGG | 0.509234 | 3_1:+8698402 | Msa0347560:CDS |
| GAACATTTGTTCACTTGAGA+TGG | 0.520398 | 3_1:-8696286 | None:intergenic |
| ATTCTTGATAGAAAATCAAT+GGG | 0.522100 | 3_1:+8697717 | Msa0347560:CDS |
| GTGGCTTTGGTACCTTGGTA+AGG | 0.531498 | 3_1:+8697634 | Msa0347560:CDS |
| TGACCACCTACTCCAACACT+TGG | 0.537412 | 3_1:-8697600 | None:intergenic |
| AAAGTTCATGGATTCCCTGC+AGG | 0.538278 | 3_1:+8696878 | Msa0347560:CDS |
| ATGGTGAATACTGTAACAAT+AGG | 0.540272 | 3_1:-8697828 | None:intergenic |
| TCTTGCATGGAAGATAAGGT+TGG | 0.542256 | 3_1:+8697794 | Msa0347560:CDS |
| ATGCAGTGCATGTTAACCAT+AGG | 0.544066 | 3_1:+8696479 | Msa0347560:CDS |
| CACTGAAACAAAATCCAAGA+TGG | 0.547598 | 3_1:+8696579 | Msa0347560:CDS |
| ATTCACCATTCAAAGAACAT+TGG | 0.547935 | 3_1:+8697842 | Msa0347560:CDS |
| GGTGGTCACATCAGTGGAGG+TGG | 0.552995 | 3_1:+8697615 | Msa0347560:CDS |
| TGTCCAAGTGTTGGAGTAGG+TGG | 0.561626 | 3_1:+8697597 | Msa0347560:CDS |
| AAAGAGCCTATACCAGAAGC+TGG | 0.561825 | 3_1:+8698203 | Msa0347560:CDS |
| TGAATTTCTGATTCATGGGA+AGG | 0.564377 | 3_1:-8696638 | None:intergenic |
| ACTTAGAGTATATATGAAGA+TGG | 0.565586 | 3_1:-8698898 | None:intergenic |
| ACATACAATATATGGTCAAG+TGG | 0.568366 | 3_1:+8698360 | Msa0347560:CDS |
| GTGCAGATTAGAGTGGTTAG+TGG | 0.572020 | 3_1:+8696692 | Msa0347560:CDS |
| CTGAATCCAAGCAGATTCAT+CGG | 0.574804 | 3_1:-8696807 | None:intergenic |
| GAATCTGCTTGGATTCAGGC+TGG | 0.577913 | 3_1:+8696812 | Msa0347560:CDS |
| TTAAGTTGTTAATTCAGGGG+AGG | 0.578715 | 3_1:-8698664 | None:intergenic |
| AAGGAAGAGAGAGTTAAACT+TGG | 0.579262 | 3_1:-8697982 | None:intergenic |
| AGTAGTAAAACATTAAGAGA+TGG | 0.583925 | 3_1:+8696382 | Msa0347560:exon |
| ACAGGTATATGTCCAAGTGT+TGG | 0.585011 | 3_1:+8697588 | Msa0347560:intron |
| GGTACCTTGGTAAGGAAACA+TGG | 0.585139 | 3_1:+8697642 | Msa0347560:CDS |
| GTGAATACTGTAACAATAGG+TGG | 0.587206 | 3_1:-8697825 | None:intergenic |
| TCAATTTAAGATAACATTTG+GGG | 0.590288 | 3_1:+8698985 | Msa0347560:three_prime_UTR |
| AGTGGTGGCCATGATTATGA+AGG | 0.592283 | 3_1:+8696710 | Msa0347560:CDS |
| CTTATAATGGAACCTTATGG+TGG | 0.592307 | 3_1:+8698275 | Msa0347560:CDS |
| CCAACTGAGCTAAGCTCATG+AGG | 0.592811 | 3_1:+8698781 | Msa0347560:three_prime_UTR |
| GATTGGTGTGCAGATTAGAG+TGG | 0.599674 | 3_1:+8696685 | Msa0347560:CDS |
| CATACAATATATGGTCAAGT+GGG | 0.600319 | 3_1:+8698361 | Msa0347560:CDS |
| TAATTAAGTTGTTAATTCAG+GGG | 0.600580 | 3_1:-8698667 | None:intergenic |
| GCAACAAGTATGACAATACA+AGG | 0.601545 | 3_1:+8698513 | Msa0347560:CDS |
| TACTCAGAAGCAAGTGTTTG+GGG | 0.603811 | 3_1:+8698536 | Msa0347560:CDS |
| GGAGTAGGTGGTCACATCAG+TGG | 0.610281 | 3_1:+8697609 | Msa0347560:CDS |
| GAGAATGCATAATATATGCA+AGG | 0.621414 | 3_1:-8698754 | None:intergenic |
| TTGCCACCTATGAAGGACCT+TGG | 0.622093 | 3_1:-8697877 | None:intergenic |
| CAAGATTAATGTCGATCGAA+CGG | 0.627262 | 3_1:-8696784 | None:intergenic |
| CAACCAAGGTCCTTCATAGG+TGG | 0.629693 | 3_1:+8697874 | Msa0347560:CDS |
| ATATGTCCAAGTGTTGGAGT+AGG | 0.632250 | 3_1:+8697594 | Msa0347560:CDS |
| GGTGGACAGGGTTTAAACCC+CGG | 0.634140 | 3_1:+8698730 | Msa0347560:three_prime_UTR |
| GCTCAAACTAATTACCTGCA+GGG | 0.638432 | 3_1:-8696892 | None:intergenic |
| ATTGGAACAAGGAGCAACCA+AGG | 0.639041 | 3_1:+8697860 | Msa0347560:CDS |
| CAGGGGAGGGAATTCAGAAG+AGG | 0.643159 | 3_1:-8698650 | None:intergenic |
| GAAGGTGTCATAATGAGAAG+AGG | 0.648177 | 3_1:-8696620 | None:intergenic |
| TAGACCATGTTTCCTTACCA+AGG | 0.652475 | 3_1:-8697646 | None:intergenic |
| CATAATATATGCAAGGTCCG+GGG | 0.664743 | 3_1:-8698747 | None:intergenic |
| GTAGGTGGTCACATCAGTGG+AGG | 0.669019 | 3_1:+8697612 | Msa0347560:CDS |
| CAGATTAGAGTGGTTAGTGG+TGG | 0.684127 | 3_1:+8696695 | Msa0347560:CDS |
| ATTCAAAGAACATTGGAACA+AGG | 0.701106 | 3_1:+8697849 | Msa0347560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAATATGTAACAAA+CGG | - | chr3_1:8697117-8697136 | None:intergenic | 10.0% |
| !!! | TCATAATAATTTAGTTTTTT+TGG | + | chr3_1:8697219-8697238 | Msa0347560:intron | 10.0% |
| !! | AAAAAAAAAACTATAACAAA+CGG | + | chr3_1:8697395-8697414 | Msa0347560:intron | 10.0% |
| !!! | AAAAATTGATTTTTTGTTTG+AGG | - | chr3_1:8697315-8697334 | None:intergenic | 15.0% |
| !!! | TTTTCTTAAAAAATAACCAA+CGG | + | chr3_1:8697469-8697488 | Msa0347560:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAACCGT+TGG | - | chr3_1:8697488-8697507 | None:intergenic | 15.0% |
| !!! | TTAATTAAGTTGTTAATTCA+GGG | - | chr3_1:8698671-8698690 | None:intergenic | 15.0% |
| !!! | AGCACTTATAATATTTATTT+TGG | + | chr3_1:8698690-8698709 | Msa0347560:three_prime_UTR | 15.0% |
| !!! | ACTTATAATATTTATTTTGG+TGG | + | chr3_1:8698693-8698712 | Msa0347560:three_prime_UTR | 15.0% |
| !!! | CTTATAATATTTATTTTGGT+GGG | + | chr3_1:8698694-8698713 | Msa0347560:three_prime_UTR | 15.0% |
| !!! | TTATAATATTTATTTTGGTG+GGG | + | chr3_1:8698695-8698714 | Msa0347560:three_prime_UTR | 15.0% |
| !!! | TTCAATTTAAGATAACATTT+GGG | + | chr3_1:8698984-8699003 | Msa0347560:three_prime_UTR | 15.0% |
| !!! | ATAACGAGTGATATAATTTT+TGG | - | chr3_1:8696345-8696364 | None:intergenic | 20.0% |
| !!! | ATCTAGTTATGACTTTATTT+TGG | + | chr3_1:8697090-8697109 | Msa0347560:intron | 20.0% |
| !! | AATTCTTGATAGAAAATCAA+TGG | + | chr3_1:8697716-8697735 | Msa0347560:CDS | 20.0% |
| !! | ATTCTTGATAGAAAATCAAT+GGG | + | chr3_1:8697717-8697736 | Msa0347560:CDS | 20.0% |
| !!! | TAATTAAGTTGTTAATTCAG+GGG | - | chr3_1:8698670-8698689 | None:intergenic | 20.0% |
| !!! | CTTAATTAAGTTGTTAATTC+AGG | - | chr3_1:8698672-8698691 | None:intergenic | 20.0% |
| !!! | TATAATATTTATTTTGGTGG+GGG | + | chr3_1:8698696-8698715 | Msa0347560:three_prime_UTR | 20.0% |
| !!! | GTTCAATTTAAGATAACATT+TGG | + | chr3_1:8698983-8699002 | Msa0347560:three_prime_UTR | 20.0% |
| !!! | TCAATTTAAGATAACATTTG+GGG | + | chr3_1:8698985-8699004 | Msa0347560:three_prime_UTR | 20.0% |
| !!! | TAATTTTTGGTTCTAAGAAG+TGG | - | chr3_1:8696332-8696351 | None:intergenic | 25.0% |
| !! | TTACTACTTTCCAAACTTTT+TGG | - | chr3_1:8696370-8696389 | None:intergenic | 25.0% |
| ! | AGTAGTAAAACATTAAGAGA+TGG | + | chr3_1:8696382-8696401 | Msa0347560:exon | 25.0% |
| ! | ATGAGATCAATCATGATAAA+GGG | - | chr3_1:8696758-8696777 | None:intergenic | 25.0% |
| ! | ATTAAATTGCTTATCCAAAC+AGG | + | chr3_1:8697570-8697589 | Msa0347560:intron | 25.0% |
| !! | TTTTCCCATTTACATCTATA+AGG | - | chr3_1:8697698-8697717 | None:intergenic | 25.0% |
| !! | TTAAGTTTTCTTTTTCTCCA+AGG | - | chr3_1:8698004-8698023 | None:intergenic | 25.0% |
| ! | CACATTAGCATTACTTATAA+TGG | + | chr3_1:8698262-8698281 | Msa0347560:CDS | 25.0% |
| !! | TTACTTATAATGGAACCTTA+TGG | + | chr3_1:8698272-8698291 | Msa0347560:CDS | 25.0% |
| ! | CTTGTACAACATACAATATA+TGG | + | chr3_1:8698352-8698371 | Msa0347560:CDS | 25.0% |
| ! | ACTTAGAGTATATATGAAGA+TGG | - | chr3_1:8698901-8698920 | None:intergenic | 25.0% |
| !! | AGAGCTTTAACTTCAATATT+TGG | + | chr3_1:8698942-8698961 | Msa0347560:three_prime_UTR | 25.0% |
| !! | GAGCTTTAACTTCAATATTT+GGG | + | chr3_1:8698943-8698962 | Msa0347560:three_prime_UTR | 25.0% |
| CTCGTTATAACCAAAAAGTT+TGG | + | chr3_1:8696357-8696376 | Msa0347560:five_prime_UTR | 30.0% | |
| CAATACTTGTGGATACAATA+TGG | - | chr3_1:8696555-8696574 | None:intergenic | 30.0% | |
| CATATTGTATCCACAAGTAT+TGG | + | chr3_1:8696553-8696572 | Msa0347560:CDS | 30.0% | |
| TGCTTGAATTTCTGATTCAT+GGG | - | chr3_1:8696645-8696664 | None:intergenic | 30.0% | |
| ! | AATCTTTTTGCTGCATAGTA+TGG | - | chr3_1:8696669-8696688 | None:intergenic | 30.0% |
| ATACTATGCAGCAAAAAGAT+TGG | + | chr3_1:8696668-8696687 | Msa0347560:CDS | 30.0% | |
| GATGAGATCAATCATGATAA+AGG | - | chr3_1:8696759-8696778 | None:intergenic | 30.0% | |
| ! | TCTAAAGCAAGTAAAGTTCA+TGG | + | chr3_1:8696866-8696885 | Msa0347560:CDS | 30.0% |
| !! | ACTTATTTCTATAAGCTCTC+TGG | + | chr3_1:8697035-8697054 | Msa0347560:intron | 30.0% |
| CTCACCTTATAGATGTAAAT+GGG | + | chr3_1:8697691-8697710 | Msa0347560:CDS | 30.0% | |
| !!! | AATGGGAGAAGATGTTTTTT+GGG | + | chr3_1:8697734-8697753 | Msa0347560:CDS | 30.0% |
| ATGGTGAATACTGTAACAAT+AGG | - | chr3_1:8697831-8697850 | None:intergenic | 30.0% | |
| ATTCACCATTCAAAGAACAT+TGG | + | chr3_1:8697842-8697861 | Msa0347560:CDS | 30.0% | |
| TTGTTCCAATGTTCTTTGAA+TGG | - | chr3_1:8697850-8697869 | None:intergenic | 30.0% | |
| ATTCAAAGAACATTGGAACA+AGG | + | chr3_1:8697849-8697868 | Msa0347560:CDS | 30.0% | |
| AGAATAGTTGCTCAAAATAG+TGG | + | chr3_1:8697936-8697955 | Msa0347560:CDS | 30.0% | |
| !! | CAATCAGTTTTGTATTTTGC+AGG | + | chr3_1:8698095-8698114 | Msa0347560:CDS | 30.0% |
| TATTCAGCAAGAGTTCTATA+GGG | - | chr3_1:8698136-8698155 | None:intergenic | 30.0% | |
| ! | CTCTTTTACATAGTCAGATT+TGG | - | chr3_1:8698189-8698208 | None:intergenic | 30.0% |
| ! | TTCCTTTTCTATGTGGAAAA+GGG | - | chr3_1:8698331-8698350 | None:intergenic | 30.0% |
| ! | TTTCCTTTTCTATGTGGAAA+AGG | - | chr3_1:8698332-8698351 | None:intergenic | 30.0% |
| ! | TACAAGTTTCCTTTTCTATG+TGG | - | chr3_1:8698338-8698357 | None:intergenic | 30.0% |
| ACATACAATATATGGTCAAG+TGG | + | chr3_1:8698360-8698379 | Msa0347560:CDS | 30.0% | |
| CATACAATATATGGTCAAGT+GGG | + | chr3_1:8698361-8698380 | Msa0347560:CDS | 30.0% | |
| AATCCAACAAGCATATAAAG+TGG | + | chr3_1:8698402-8698421 | Msa0347560:CDS | 30.0% | |
| AGCTGCATATTACAACTATA+GGG | + | chr3_1:8698475-8698494 | Msa0347560:CDS | 30.0% | |
| AACTATAGGGATCTTGATAT+AGG | + | chr3_1:8698488-8698507 | Msa0347560:CDS | 30.0% | |
| ! | TCATTCCTGAAAAAGTTTTG+GGG | - | chr3_1:8698620-8698639 | None:intergenic | 30.0% |
| ! | CTCATTCCTGAAAAAGTTTT+GGG | - | chr3_1:8698621-8698640 | None:intergenic | 30.0% |
| GAGAATGCATAATATATGCA+AGG | - | chr3_1:8698757-8698776 | None:intergenic | 30.0% | |
| GAACATTTGTTCACTTGAGA+TGG | - | chr3_1:8696289-8696308 | None:intergenic | 35.0% | |
| TTCAGAAAAGCTACTACCTA+TGG | - | chr3_1:8696498-8696517 | None:intergenic | 35.0% | |
| ! | GATAAACACTGTGTTTTCAC+TGG | - | chr3_1:8696522-8696541 | None:intergenic | 35.0% |
| TTCAGTGATTCCAATACTTG+TGG | - | chr3_1:8696566-8696585 | None:intergenic | 35.0% | |
| CACTGAAACAAAATCCAAGA+TGG | + | chr3_1:8696579-8696598 | Msa0347560:CDS | 35.0% | |
| TGAATTTCTGATTCATGGGA+AGG | - | chr3_1:8696641-8696660 | None:intergenic | 35.0% | |
| CTGCTTGAATTTCTGATTCA+TGG | - | chr3_1:8696646-8696665 | None:intergenic | 35.0% | |
| AAGACAGTCCTTCATAATCA+TGG | - | chr3_1:8696721-8696740 | None:intergenic | 35.0% | |
| CAAGATTAATGTCGATCGAA+CGG | - | chr3_1:8696787-8696806 | None:intergenic | 35.0% | |
| GCTCACCTTATAGATGTAAA+TGG | + | chr3_1:8697690-8697709 | Msa0347560:CDS | 35.0% | |
| !!! | CAATGGGAGAAGATGTTTTT+TGG | + | chr3_1:8697733-8697752 | Msa0347560:CDS | 35.0% |
| !!! | GATGTTTTTTGGGCTATTAG+AGG | + | chr3_1:8697744-8697763 | Msa0347560:CDS | 35.0% |
| !!! | GTTTTGGAATCATTCTTGCA+TGG | + | chr3_1:8697781-8697800 | Msa0347560:CDS | 35.0% |
| TCATTCTTGCATGGAAGATA+AGG | + | chr3_1:8697790-8697809 | Msa0347560:CDS | 35.0% | |
| GTGAATACTGTAACAATAGG+TGG | - | chr3_1:8697828-8697847 | None:intergenic | 35.0% | |
| AGAGAGAGTTAAACTTGGTT+TGG | - | chr3_1:8697980-8697999 | None:intergenic | 35.0% | |
| AAGGAAGAGAGAGTTAAACT+TGG | - | chr3_1:8697985-8698004 | None:intergenic | 35.0% | |
| AAGTTTAACTCTCTCTTCCT+TGG | + | chr3_1:8697984-8698003 | Msa0347560:CDS | 35.0% | |
| AATGAGAGTTTCCCTGAATT+AGG | + | chr3_1:8698035-8698054 | Msa0347560:CDS | 35.0% | |
| ATGAGAGTTTCCCTGAATTA+GGG | + | chr3_1:8698036-8698055 | Msa0347560:CDS | 35.0% | |
| AAGACTGCATTGAAATGAGT+TGG | + | chr3_1:8698069-8698088 | Msa0347560:CDS | 35.0% | |
| CTATTCAGCAAGAGTTCTAT+AGG | - | chr3_1:8698137-8698156 | None:intergenic | 35.0% | |
| !! | AAGCTGGTTTAGAAGGTATT+TGG | + | chr3_1:8698219-8698238 | Msa0347560:CDS | 35.0% |
| ! | CTTATAATGGAACCTTATGG+TGG | + | chr3_1:8698275-8698294 | Msa0347560:CDS | 35.0% |
| ! | ATCCCTTTTCCACATAGAAA+AGG | + | chr3_1:8698326-8698345 | Msa0347560:CDS | 35.0% |
| CATCCACTTTATATGCTTGT+TGG | - | chr3_1:8698408-8698427 | None:intergenic | 35.0% | |
| AAGTGGATGAGAATGCTTTA+TGG | + | chr3_1:8698419-8698438 | Msa0347560:CDS | 35.0% | |
| !! | CTTGGAGACTTTGAAACATA+AGG | - | chr3_1:8698455-8698474 | None:intergenic | 35.0% |
| TAGTTGTAATATGCAGCTCT+TGG | - | chr3_1:8698473-8698492 | None:intergenic | 35.0% | |
| GAGCTGCATATTACAACTAT+AGG | + | chr3_1:8698474-8698493 | Msa0347560:CDS | 35.0% | |
| GCAACAAGTATGACAATACA+AGG | + | chr3_1:8698513-8698532 | Msa0347560:CDS | 35.0% | |
| TAAGGGAAACTTTAAGCGAT+TGG | + | chr3_1:8698571-8698590 | Msa0347560:CDS | 35.0% | |
| !! | TTGATCCCCAAAACTTTTTC+AGG | + | chr3_1:8698612-8698631 | Msa0347560:CDS | 35.0% |
| ! | GCTCATTCCTGAAAAAGTTT+TGG | - | chr3_1:8698622-8698641 | None:intergenic | 35.0% |
| TAAGTTGTTAATTCAGGGGA+GGG | - | chr3_1:8698666-8698685 | None:intergenic | 35.0% | |
| ! | TTAAGTTGTTAATTCAGGGG+AGG | - | chr3_1:8698667-8698686 | None:intergenic | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | - | chr3_1:8698752-8698771 | None:intergenic | 35.0% | |
| ATGCAGTGCATGTTAACCAT+AGG | + | chr3_1:8696479-8696498 | Msa0347560:CDS | 40.0% | |
| CTTGATGAATTCAGCCATCT+TGG | - | chr3_1:8696596-8696615 | None:intergenic | 40.0% | |
| !! | GAAGGTGTCATAATGAGAAG+AGG | - | chr3_1:8696623-8696642 | None:intergenic | 40.0% |
| CTGAATCCAAGCAGATTCAT+CGG | - | chr3_1:8696810-8696829 | None:intergenic | 40.0% | |
| GCTCAAACTAATTACCTGCA+GGG | - | chr3_1:8696895-8696914 | None:intergenic | 40.0% | |
| AGCTCAAACTAATTACCTGC+AGG | - | chr3_1:8696896-8696915 | None:intergenic | 40.0% | |
| CACTTGGACATATACCTGTT+TGG | - | chr3_1:8697587-8697606 | None:intergenic | 40.0% | |
| ACAGGTATATGTCCAAGTGT+TGG | + | chr3_1:8697588-8697607 | Msa0347560:intron | 40.0% | |
| !! | ATATGTCCAAGTGTTGGAGT+AGG | + | chr3_1:8697594-8697613 | Msa0347560:CDS | 40.0% |
| TAGACCATGTTTCCTTACCA+AGG | - | chr3_1:8697649-8697668 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGGGCTATTAGAGG+AGG | + | chr3_1:8697747-8697766 | Msa0347560:CDS | 40.0% |
| TCTTGCATGGAAGATAAGGT+TGG | + | chr3_1:8697794-8697813 | Msa0347560:CDS | 40.0% | |
| CTATGTATTGCCACCTATGA+AGG | - | chr3_1:8697887-8697906 | None:intergenic | 40.0% | |
| TGTCTTGCAACCCTAATTCA+GGG | - | chr3_1:8698049-8698068 | None:intergenic | 40.0% | |
| TTGTCTTGCAACCCTAATTC+AGG | - | chr3_1:8698050-8698069 | None:intergenic | 40.0% | |
| !!! | GGCTTTGAATGAGCTTTTGA+AGG | - | chr3_1:8698168-8698187 | None:intergenic | 40.0% |
| TCTAAACCAGCTTCTGGTAT+AGG | - | chr3_1:8698212-8698231 | None:intergenic | 40.0% | |
| ! | ATACCAGAAGCTGGTTTAGA+AGG | + | chr3_1:8698212-8698231 | Msa0347560:CDS | 40.0% |
| ATACCTTCTAAACCAGCTTC+TGG | - | chr3_1:8698218-8698237 | None:intergenic | 40.0% | |
| TCATTCAGTCTTCCACCATA+AGG | - | chr3_1:8698290-8698309 | None:intergenic | 40.0% | |
| GTACTCAGAAGCAAGTGTTT+GGG | + | chr3_1:8698535-8698554 | Msa0347560:CDS | 40.0% | |
| TACTCAGAAGCAAGTGTTTG+GGG | + | chr3_1:8698536-8698555 | Msa0347560:CDS | 40.0% | |
| ! | TTGGGGCATCAAGTACTTTA+AGG | + | chr3_1:8698553-8698572 | Msa0347560:CDS | 40.0% |
| ! | TGGGGCATCAAGTACTTTAA+GGG | + | chr3_1:8698554-8698573 | Msa0347560:CDS | 40.0% |
| !! | ATTTTGGTGGGGGACTATTT+TGG | + | chr3_1:8698706-8698725 | Msa0347560:three_prime_UTR | 40.0% |
| CATAATATATGCAAGGTCCG+GGG | - | chr3_1:8698750-8698769 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr3_1:8698751-8698770 | None:intergenic | 40.0% | |
| GATTGGTGTGCAGATTAGAG+TGG | + | chr3_1:8696685-8696704 | Msa0347560:CDS | 45.0% | |
| GTGCAGATTAGAGTGGTTAG+TGG | + | chr3_1:8696692-8696711 | Msa0347560:CDS | 45.0% | |
| CAGATTAGAGTGGTTAGTGG+TGG | + | chr3_1:8696695-8696714 | Msa0347560:CDS | 45.0% | |
| AGTGGTGGCCATGATTATGA+AGG | + | chr3_1:8696710-8696729 | Msa0347560:CDS | 45.0% | |
| ATCTTGCCGATGAATCTGCT+TGG | + | chr3_1:8696801-8696820 | Msa0347560:CDS | 45.0% | |
| CGATGAATCTGCTTGGATTC+AGG | + | chr3_1:8696808-8696827 | Msa0347560:CDS | 45.0% | |
| ATTCAGGCTGGTGCAACATT+AGG | + | chr3_1:8696824-8696843 | Msa0347560:CDS | 45.0% | |
| AAAGTTCATGGATTCCCTGC+AGG | + | chr3_1:8696878-8696897 | Msa0347560:CDS | 45.0% | |
| GGTACCTTGGTAAGGAAACA+TGG | + | chr3_1:8697642-8697661 | Msa0347560:CDS | 45.0% | |
| !! | GGAGGTAGTGCTACTAGTTT+TGG | + | chr3_1:8697765-8697784 | Msa0347560:CDS | 45.0% |
| ATTGGAACAAGGAGCAACCA+AGG | + | chr3_1:8697860-8697879 | Msa0347560:CDS | 45.0% | |
| AAAGAGCCTATACCAGAAGC+TGG | + | chr3_1:8698203-8698222 | Msa0347560:CDS | 45.0% | |
| GGTACTCAGAAGCAAGTGTT+TGG | + | chr3_1:8698534-8698553 | Msa0347560:CDS | 45.0% | |
| !!! | GACTATTTTGGTGGTGGACA+GGG | + | chr3_1:8698718-8698737 | Msa0347560:three_prime_UTR | 45.0% |
| TGAGCTTAGCTCAGTTGGTT+TGG | - | chr3_1:8698779-8698798 | None:intergenic | 45.0% | |
| GAATCTGCTTGGATTCAGGC+TGG | + | chr3_1:8696812-8696831 | Msa0347560:CDS | 50.0% | |
| !! | TGTCCAAGTGTTGGAGTAGG+TGG | + | chr3_1:8697597-8697616 | Msa0347560:CDS | 50.0% |
| TGACCACCTACTCCAACACT+TGG | - | chr3_1:8697603-8697622 | None:intergenic | 50.0% | |
| !! | GTGGCTTTGGTACCTTGGTA+AGG | + | chr3_1:8697634-8697653 | Msa0347560:CDS | 50.0% |
| GAGCAACCAAGGTCCTTCAT+AGG | + | chr3_1:8697871-8697890 | Msa0347560:CDS | 50.0% | |
| CAACCAAGGTCCTTCATAGG+TGG | + | chr3_1:8697874-8697893 | Msa0347560:CDS | 50.0% | |
| TTGCCACCTATGAAGGACCT+TGG | - | chr3_1:8697880-8697899 | None:intergenic | 50.0% | |
| !! | TTGGTGGGGGACTATTTTGG+TGG | + | chr3_1:8698709-8698728 | Msa0347560:three_prime_UTR | 50.0% |
| !!! | GGACTATTTTGGTGGTGGAC+AGG | + | chr3_1:8698717-8698736 | Msa0347560:three_prime_UTR | 50.0% |
| CCTCATGAGCTTAGCTCAGT+TGG | - | chr3_1:8698784-8698803 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCATG+AGG | + | chr3_1:8698781-8698800 | Msa0347560:three_prime_UTR | 50.0% | |
| GGAGTAGGTGGTCACATCAG+TGG | + | chr3_1:8697609-8697628 | Msa0347560:CDS | 55.0% | |
| GTAGGTGGTCACATCAGTGG+AGG | + | chr3_1:8697612-8697631 | Msa0347560:CDS | 55.0% | |
| CACATCAGTGGAGGTGGCTT+TGG | + | chr3_1:8697621-8697640 | Msa0347560:CDS | 55.0% | |
| !! | TGGAGGTGGCTTTGGTACCT+TGG | + | chr3_1:8697629-8697648 | Msa0347560:CDS | 55.0% |
| CAGGGGAGGGAATTCAGAAG+AGG | - | chr3_1:8698653-8698672 | None:intergenic | 55.0% | |
| !!! | GTGGGGGACTATTTTGGTGG+TGG | + | chr3_1:8698712-8698731 | Msa0347560:three_prime_UTR | 55.0% |
| GGTGGACAGGGTTTAAACCC+CGG | + | chr3_1:8698730-8698749 | Msa0347560:three_prime_UTR | 55.0% | |
| GGTGGTCACATCAGTGGAGG+TGG | + | chr3_1:8697615-8697634 | Msa0347560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 8696285 | 8699032 | 8696285 | ID=Msa0347560;Name=Msa0347560 |
| chr3_1 | mRNA | 8696285 | 8699032 | 8696285 | ID=Msa0347560-mRNA-1;Parent=Msa0347560;Name=Msa0347560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=116|1|1|1|1|1|2|359|526 |
| chr3_1 | exon | 8696285 | 8696899 | 8696285 | ID=Msa0347560-mRNA-1:exon:2519;Parent=Msa0347560-mRNA-1 |
| chr3_1 | exon | 8697592 | 8699032 | 8697592 | ID=Msa0347560-mRNA-1:exon:2520;Parent=Msa0347560-mRNA-1 |
| chr3_1 | five_prime_UTR | 8696285 | 8696400 | 8696285 | ID=Msa0347560-mRNA-1:five_prime_utr;Parent=Msa0347560-mRNA-1 |
| chr3_1 | CDS | 8696401 | 8696899 | 8696401 | ID=Msa0347560-mRNA-1:cds;Parent=Msa0347560-mRNA-1 |
| chr3_1 | CDS | 8697592 | 8698673 | 8697592 | ID=Msa0347560-mRNA-1:cds;Parent=Msa0347560-mRNA-1 |
| chr3_1 | three_prime_UTR | 8698674 | 8699032 | 8698674 | ID=Msa0347560-mRNA-1:three_prime_utr;Parent=Msa0347560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
