Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489680 | XP_003598276.1 | 93.916 | 526 | 32 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489680 | sp|Q9SUC6|BBE22_ARATH | 61.319 | 455 | 172 | 4 | 70 | 522 | 77 | 529 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489680 | G7J0C2 | 93.916 | 526 | 32 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1004 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0442170 | Msa0489680 | 0.874888 | 4.747567e-68 | -8.615850e-47 |
| Msa0347560 | Msa0489680 | 0.947438 | 6.723929e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489680 | MtrunA17_Chr3g0079791 | 93.916 | 526 | 32 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1004 |
| Msa0489680 | MtrunA17_Chr3g0079801 | 94.106 | 526 | 31 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1003 |
| Msa0489680 | MtrunA17_Chr3g0079831 | 87.238 | 525 | 65 | 1 | 1 | 525 | 17 | 539 | 0.0 | 925 |
| Msa0489680 | MtrunA17_Chr2g0292971 | 53.229 | 511 | 228 | 6 | 19 | 522 | 23 | 529 | 0.0 | 578 |
| Msa0489680 | MtrunA17_Chr4g0051421 | 55.263 | 532 | 221 | 7 | 3 | 520 | 7 | 535 | 0.0 | 572 |
| Msa0489680 | MtrunA17_Chr4g0051421 | 55.121 | 537 | 223 | 8 | 2 | 524 | 545 | 1077 | 0.0 | 558 |
| Msa0489680 | MtrunA17_Chr4g0051211 | 57.204 | 465 | 189 | 4 | 69 | 523 | 8 | 472 | 0.0 | 571 |
| Msa0489680 | MtrunA17_Chr2g0292991 | 56.439 | 528 | 218 | 8 | 1 | 523 | 8 | 528 | 0.0 | 567 |
| Msa0489680 | MtrunA17_Chr2g0293021 | 56.084 | 526 | 215 | 8 | 1 | 519 | 8 | 524 | 0.0 | 566 |
| Msa0489680 | MtrunA17_Chr4g0051541 | 56.102 | 508 | 210 | 8 | 23 | 522 | 28 | 530 | 0.0 | 557 |
| Msa0489680 | MtrunA17_Chr4g0051381 | 53.008 | 532 | 237 | 6 | 2 | 522 | 6 | 535 | 0.0 | 553 |
| Msa0489680 | MtrunA17_Chr4g0051551 | 51.894 | 528 | 243 | 8 | 1 | 522 | 36 | 558 | 0.0 | 550 |
| Msa0489680 | MtrunA17_Chr2g0293121 | 49.237 | 524 | 258 | 5 | 4 | 522 | 3 | 523 | 0.0 | 544 |
| Msa0489680 | MtrunA17_Chr4g0051411 | 51.698 | 530 | 243 | 7 | 2 | 520 | 6 | 533 | 0.0 | 537 |
| Msa0489680 | MtrunA17_Chr4g0051441 | 48.582 | 564 | 244 | 7 | 2 | 524 | 58 | 616 | 0.0 | 527 |
| Msa0489680 | MtrunA17_Chr2g0293161 | 48.968 | 533 | 256 | 9 | 1 | 522 | 5 | 532 | 0.0 | 521 |
| Msa0489680 | MtrunA17_Chr2g0293191 | 49.071 | 538 | 253 | 10 | 1 | 522 | 31 | 563 | 0.0 | 521 |
| Msa0489680 | MtrunA17_Chr2g0293041 | 46.771 | 511 | 258 | 7 | 21 | 522 | 35 | 540 | 1.03e-164 | 478 |
| Msa0489680 | MtrunA17_Chr2g0293031 | 44.068 | 531 | 287 | 5 | 1 | 522 | 9 | 538 | 2.70e-164 | 477 |
| Msa0489680 | MtrunA17_Chr4g0028611 | 46.169 | 522 | 274 | 4 | 1 | 520 | 33 | 549 | 6.46e-162 | 471 |
| Msa0489680 | MtrunA17_Chr4g0048311 | 48.228 | 508 | 250 | 9 | 24 | 522 | 37 | 540 | 9.76e-161 | 468 |
| Msa0489680 | MtrunA17_Chr4g0048361 | 46.768 | 526 | 266 | 7 | 1 | 520 | 7 | 524 | 1.12e-160 | 467 |
| Msa0489680 | MtrunA17_Chr4g0051531 | 47.103 | 535 | 268 | 8 | 1 | 524 | 624 | 1154 | 6.94e-160 | 484 |
| Msa0489680 | MtrunA17_Chr4g0051531 | 46.743 | 522 | 260 | 9 | 10 | 520 | 24 | 538 | 3.34e-152 | 464 |
| Msa0489680 | MtrunA17_Chr4g0046581 | 47.563 | 513 | 249 | 7 | 24 | 524 | 31 | 535 | 2.48e-159 | 464 |
| Msa0489680 | MtrunA17_Chr4g0048351 | 45.660 | 530 | 268 | 9 | 1 | 520 | 20 | 539 | 3.26e-159 | 464 |
| Msa0489680 | MtrunA17_Chr6g0457031 | 46.374 | 524 | 263 | 8 | 7 | 520 | 9 | 524 | 1.91e-158 | 462 |
| Msa0489680 | MtrunA17_Chr6g0457061 | 46.565 | 524 | 262 | 8 | 7 | 520 | 9 | 524 | 6.05e-158 | 461 |
| Msa0489680 | MtrunA17_Chr3g0079821 | 88.793 | 232 | 26 | 0 | 295 | 526 | 1 | 232 | 1.65e-152 | 435 |
| Msa0489680 | MtrunA17_Chr2g0288611 | 46.739 | 460 | 237 | 5 | 70 | 524 | 12 | 468 | 4.60e-144 | 422 |
| Msa0489680 | MtrunA17_Chr1g0188271 | 43.579 | 475 | 257 | 7 | 54 | 519 | 60 | 532 | 2.92e-126 | 380 |
| Msa0489680 | MtrunA17_Chr4g0048331 | 45.074 | 406 | 203 | 7 | 119 | 520 | 2 | 391 | 5.85e-126 | 374 |
| Msa0489680 | MtrunA17_Chr2g0320381 | 75.362 | 69 | 13 | 1 | 164 | 232 | 48 | 112 | 3.83e-29 | 111 |
| Msa0489680 | MtrunA17_Chr2g0320371 | 91.111 | 45 | 4 | 0 | 122 | 166 | 1 | 45 | 8.67e-22 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489680 | AT4G20860.1 | 61.319 | 455 | 172 | 4 | 70 | 522 | 77 | 529 | 0.0 | 577 |
| Msa0489680 | AT5G44360.2 | 56.226 | 514 | 198 | 11 | 23 | 522 | 46 | 546 | 0.0 | 553 |
| Msa0489680 | AT5G44360.1 | 56.226 | 514 | 198 | 11 | 23 | 522 | 30 | 530 | 0.0 | 552 |
| Msa0489680 | AT5G44400.1 | 54.049 | 531 | 227 | 12 | 4 | 520 | 7 | 534 | 0.0 | 551 |
| Msa0489680 | AT2G34790.1 | 50.659 | 531 | 234 | 9 | 5 | 520 | 11 | 528 | 0.0 | 542 |
| Msa0489680 | AT5G44390.1 | 52.399 | 521 | 233 | 12 | 13 | 522 | 24 | 540 | 0.0 | 535 |
| Msa0489680 | AT1G30760.2 | 53.242 | 509 | 221 | 9 | 21 | 520 | 48 | 548 | 0.0 | 535 |
| Msa0489680 | AT1G30760.1 | 53.242 | 509 | 221 | 9 | 21 | 520 | 30 | 530 | 0.0 | 533 |
| Msa0489680 | AT5G44380.1 | 50.954 | 524 | 242 | 11 | 9 | 520 | 17 | 537 | 3.37e-169 | 489 |
| Msa0489680 | AT5G44380.2 | 50.954 | 524 | 242 | 11 | 9 | 520 | 57 | 577 | 5.23e-169 | 491 |
| Msa0489680 | AT5G44440.1 | 47.092 | 533 | 268 | 9 | 2 | 525 | 5 | 532 | 1.30e-168 | 488 |
| Msa0489680 | AT4G20820.1 | 47.195 | 517 | 258 | 9 | 8 | 520 | 19 | 524 | 1.75e-167 | 485 |
| Msa0489680 | AT5G44440.2 | 47.092 | 533 | 268 | 9 | 2 | 525 | 75 | 602 | 2.03e-167 | 487 |
| Msa0489680 | AT1G26420.1 | 47.637 | 529 | 258 | 8 | 1 | 520 | 5 | 523 | 3.87e-167 | 484 |
| Msa0489680 | AT1G26410.1 | 50.209 | 478 | 227 | 6 | 48 | 520 | 76 | 547 | 9.21e-163 | 474 |
| Msa0489680 | AT1G26380.1 | 47.170 | 530 | 263 | 7 | 2 | 522 | 4 | 525 | 1.16e-162 | 473 |
| Msa0489680 | AT5G44410.1 | 46.604 | 530 | 267 | 8 | 1 | 522 | 8 | 529 | 3.38e-161 | 469 |
| Msa0489680 | AT1G26390.1 | 49.478 | 479 | 231 | 6 | 48 | 520 | 52 | 525 | 4.53e-160 | 466 |
| Msa0489680 | AT1G26400.1 | 47.093 | 516 | 265 | 6 | 8 | 519 | 10 | 521 | 1.76e-158 | 462 |
| Msa0489680 | AT1G30700.1 | 47.535 | 507 | 252 | 8 | 24 | 522 | 26 | 526 | 9.50e-157 | 457 |
| Msa0489680 | AT1G30710.1 | 44.782 | 527 | 278 | 8 | 4 | 524 | 11 | 530 | 1.84e-156 | 457 |
| Msa0489680 | AT1G34575.1 | 44.129 | 528 | 270 | 10 | 4 | 521 | 11 | 523 | 3.69e-155 | 453 |
| Msa0489680 | AT1G11770.1 | 42.884 | 534 | 288 | 8 | 4 | 526 | 6 | 533 | 5.28e-153 | 448 |
| Msa0489680 | AT1G01980.1 | 44.359 | 523 | 275 | 9 | 15 | 526 | 21 | 538 | 9.77e-152 | 445 |
| Msa0489680 | AT4G20840.1 | 43.984 | 507 | 273 | 7 | 22 | 522 | 34 | 535 | 6.37e-150 | 440 |
| Msa0489680 | AT4G20800.1 | 48.283 | 466 | 233 | 5 | 60 | 520 | 61 | 523 | 8.94e-150 | 439 |
| Msa0489680 | AT1G30730.1 | 44.509 | 519 | 279 | 6 | 8 | 521 | 10 | 524 | 3.87e-149 | 438 |
| Msa0489680 | AT4G20830.2 | 45.010 | 511 | 272 | 7 | 19 | 524 | 32 | 538 | 1.57e-147 | 434 |
| Msa0489680 | AT1G30740.2 | 44.208 | 518 | 280 | 7 | 11 | 522 | 17 | 531 | 7.68e-147 | 432 |
| Msa0489680 | AT4G20830.1 | 44.990 | 509 | 271 | 7 | 19 | 522 | 32 | 536 | 1.79e-146 | 432 |
| Msa0489680 | AT1G30740.1 | 44.208 | 518 | 280 | 7 | 11 | 522 | 14 | 528 | 1.81e-146 | 431 |
| Msa0489680 | AT2G34810.1 | 43.520 | 517 | 282 | 6 | 15 | 522 | 24 | 539 | 1.32e-143 | 424 |
| Msa0489680 | AT1G30720.1 | 41.829 | 514 | 290 | 6 | 13 | 521 | 16 | 525 | 2.03e-138 | 410 |
Find 116 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCTTTAACTTCAATATT+TGG | 0.122008 | 3_4:+10316841 | Msa0489680:three_prime_UTR |
| AGCACTTATAATATTTATTT+TGG | 0.156288 | 3_4:+10316589 | Msa0489680:three_prime_UTR |
| TTGGGGCATCAAGTACTTTA+AGG | 0.182488 | 3_4:+10316452 | Msa0489680:CDS |
| CTTAATTAAGTTGTTAATTC+AGG | 0.183749 | 3_4:-10316568 | None:intergenic |
| AAGCTGGTTTAGAAGGTATT+TGG | 0.194170 | 3_4:+10316118 | Msa0489680:CDS |
| GCTCACCTTATAGATGTAAA+TGG | 0.201621 | 3_4:+10315589 | Msa0489680:CDS |
| AATGAGAGTTTCCCTGAATT+AGG | 0.214946 | 3_4:+10315934 | Msa0489680:CDS |
| CACATTAGCATTACTTATAA+TGG | 0.248787 | 3_4:+10316161 | Msa0489680:CDS |
| TTGTCTTGCAACCCTAATTC+AGG | 0.255332 | 3_4:-10315946 | None:intergenic |
| CATCCACTTTATATGCTTGT+TGG | 0.273212 | 3_4:-10316304 | None:intergenic |
| CGATGAATCTGCTTGGATTC+AGG | 0.282488 | 3_4:+10314715 | Msa0489680:CDS |
| GGAGGTAGTGCTACTAGTTT+TGG | 0.283804 | 3_4:+10315664 | Msa0489680:CDS |
| GAGCTTTAACTTCAATATTT+GGG | 0.286998 | 3_4:+10316842 | Msa0489680:three_prime_UTR |
| AAGTGGATGAGAATGCTTTA+TGG | 0.287403 | 3_4:+10316318 | Msa0489680:CDS |
| GTTCAATTTAAGATAACATT+TGG | 0.293632 | 3_4:+10316882 | Msa0489680:three_prime_UTR |
| GAGCTGCATATTACAACTAT+AGG | 0.298398 | 3_4:+10316373 | Msa0489680:CDS |
| CTGCTTGAATTTCTGATTCA+TGG | 0.298655 | 3_4:-10314550 | None:intergenic |
| CTATTCAGCAAGAGTTCTAT+AGG | 0.301114 | 3_4:-10316033 | None:intergenic |
| CTTGATGAATTCAGCCATCT+TGG | 0.311842 | 3_4:-10314500 | None:intergenic |
| TTCAATTTAAGATAACATTT+GGG | 0.337017 | 3_4:+10316883 | Msa0489680:three_prime_UTR |
| CAATACTTGTGGATACAATA+TGG | 0.349912 | 3_4:-10314459 | None:intergenic |
| AGAGAGAGTTAAACTTGGTT+TGG | 0.351945 | 3_4:-10315876 | None:intergenic |
| ATGAGAGTTTCCCTGAATTA+GGG | 0.357011 | 3_4:+10315935 | Msa0489680:CDS |
| CACATCAGTGGAGGTGGCTT+TGG | 0.360702 | 3_4:+10315520 | Msa0489680:CDS |
| TCTAAACCAGCTTCTGGTAT+AGG | 0.365053 | 3_4:-10316108 | None:intergenic |
| TGAGCTTAGCTCAGTTGGTT+TGG | 0.367087 | 3_4:-10316675 | None:intergenic |
| TCTAAAGCAAGTAAAGTTCA+TGG | 0.367121 | 3_4:+10314773 | Msa0489680:CDS |
| GGTACTCAGAAGCAAGTGTT+TGG | 0.380263 | 3_4:+10316433 | Msa0489680:CDS |
| ATTCAGGCTGGTGCAACATT+AGG | 0.380469 | 3_4:+10314731 | Msa0489680:CDS |
| TTACTTATAATGGAACCTTA+TGG | 0.388867 | 3_4:+10316171 | Msa0489680:CDS |
| TTGTTCCAATGTTCTTTGAA+TGG | 0.398919 | 3_4:-10315746 | None:intergenic |
| TGGGGCATCAAGTACTTTAA+GGG | 0.402731 | 3_4:+10316453 | Msa0489680:CDS |
| ATACCTTCTAAACCAGCTTC+TGG | 0.406374 | 3_4:-10316114 | None:intergenic |
| ATACCAGAAGCTGGTTTAGA+AGG | 0.411336 | 3_4:+10316111 | Msa0489680:CDS |
| CTTGGAGACTTTGAAACATA+AGG | 0.412215 | 3_4:-10316351 | None:intergenic |
| CTTGTACAACATACAATATA+TGG | 0.415255 | 3_4:+10316251 | Msa0489680:CDS |
| GAGCAACCAAGGTGCTTCAT+AGG | 0.416743 | 3_4:+10315770 | Msa0489680:CDS |
| AGCTGCATATTACAACTATA+GGG | 0.426482 | 3_4:+10316374 | Msa0489680:CDS |
| TGCATAATATATGCAAGGTC+CGG | 0.430117 | 3_4:-10316648 | None:intergenic |
| CATATTGTATCCACAAGTAT+TGG | 0.430537 | 3_4:+10314460 | Msa0489680:CDS |
| GTACTCAGAAGCAAGTGTTT+GGG | 0.433402 | 3_4:+10316434 | Msa0489680:CDS |
| GATGAGATCAATCATGATAA+AGG | 0.434881 | 3_4:-10314663 | None:intergenic |
| TCATTCAGTCTTCCACCATA+AGG | 0.436662 | 3_4:-10316186 | None:intergenic |
| TGGAGGTGGCTTTGGTACCT+TGG | 0.438981 | 3_4:+10315528 | Msa0489680:CDS |
| AAGTTTAACTCTCTCTTCCT+TGG | 0.446047 | 3_4:+10315883 | Msa0489680:CDS |
| CCTCATGAGCTTAGCTCAGT+TGG | 0.447530 | 3_4:-10316680 | None:intergenic |
| AGAATAGTTGCTCAAAATAG+TGG | 0.457619 | 3_4:+10315835 | Msa0489680:CDS |
| TCATTCTTGCATGGAAGATA+AGG | 0.459271 | 3_4:+10315689 | Msa0489680:CDS |
| CTCACCTTATAGATGTAAAT+GGG | 0.461407 | 3_4:+10315590 | Msa0489680:CDS |
| TAAGGGAAACTTTAAGCGAT+TGG | 0.470910 | 3_4:+10316470 | Msa0489680:CDS |
| AACTATAGGGATCTTGATAT+AGG | 0.475447 | 3_4:+10316387 | Msa0489680:CDS |
| TTAATTAAGTTGTTAATTCA+GGG | 0.475592 | 3_4:-10316567 | None:intergenic |
| TGTCTTGCAACCCTAATTCA+GGG | 0.475992 | 3_4:-10315945 | None:intergenic |
| AAGACTGCATTGAAATGAGT+TGG | 0.478707 | 3_4:+10315968 | Msa0489680:CDS |
| ATGAGATCAATCATGATAAA+GGG | 0.478729 | 3_4:-10314662 | None:intergenic |
| TAAGTTGTTAATTCAGGGGA+GGG | 0.480193 | 3_4:-10316562 | None:intergenic |
| TATTCAGCAAGAGTTCTATA+GGG | 0.484064 | 3_4:-10316032 | None:intergenic |
| ATCTTGCCGATGAATCTGCT+TGG | 0.489037 | 3_4:+10314708 | Msa0489680:CDS |
| TTCAGTGATTCCAATACTTG+TGG | 0.491607 | 3_4:-10314470 | None:intergenic |
| TTCAGAAAAGCTACTACCTA+TGG | 0.493468 | 3_4:-10314402 | None:intergenic |
| GCATAATATATGCAAGGTCC+GGG | 0.494408 | 3_4:-10316647 | None:intergenic |
| TGCTTGAATTTCTGATTCAT+GGG | 0.498893 | 3_4:-10314549 | None:intergenic |
| AAGACAGTCCTTCATAATCA+TGG | 0.503011 | 3_4:-10314625 | None:intergenic |
| TAGTTGTAATATGCAGCTCT+TGG | 0.503584 | 3_4:-10316369 | None:intergenic |
| AATCCAACAAGCATATAAAG+TGG | 0.509234 | 3_4:+10316301 | Msa0489680:CDS |
| ATTCTTGATAGAAAAGCAAT+GGG | 0.518994 | 3_4:+10315616 | Msa0489680:CDS |
| GAACATTTGTTCACTTGAGA+TGG | 0.520398 | 3_4:-10314193 | None:intergenic |
| GTGGCTTTGGTACCTTGGTA+AGG | 0.531498 | 3_4:+10315533 | Msa0489680:CDS |
| TGACCACCTACTCCAACACT+TGG | 0.537412 | 3_4:-10315499 | None:intergenic |
| AAAGTTCATGGATTCCCTGC+AGG | 0.538278 | 3_4:+10314785 | Msa0489680:CDS |
| ATGGTGAATACTGTAACAAT+AGG | 0.540272 | 3_4:-10315727 | None:intergenic |
| TCTTGCATGGAAGATAAGGT+TGG | 0.542256 | 3_4:+10315693 | Msa0489680:CDS |
| ATGCAGTGCATGTTAACCAT+AGG | 0.544066 | 3_4:+10314386 | Msa0489680:CDS |
| CACTGAAACAAAATCCAAGA+TGG | 0.547598 | 3_4:+10314486 | Msa0489680:CDS |
| ATTCACCATTCAAAGAACAT+TGG | 0.547935 | 3_4:+10315741 | Msa0489680:CDS |
| AATTCTTGATAGAAAAGCAA+TGG | 0.550485 | 3_4:+10315615 | Msa0489680:CDS |
| GGTGGTCACATCAGTGGAGG+TGG | 0.552995 | 3_4:+10315514 | Msa0489680:CDS |
| TGTCCAAGTGTTGGAGTAGG+TGG | 0.561626 | 3_4:+10315496 | Msa0489680:CDS |
| AAAGAGCCTATACCAGAAGC+TGG | 0.561825 | 3_4:+10316102 | Msa0489680:CDS |
| TGAATTTCTGATTCATGGGA+AGG | 0.564377 | 3_4:-10314545 | None:intergenic |
| ACTTAGAGTATATATGAAGA+TGG | 0.565586 | 3_4:-10316797 | None:intergenic |
| ACATACAATATATGGTCAAG+TGG | 0.568366 | 3_4:+10316259 | Msa0489680:CDS |
| GTGCAGATTAGAGTGGTTAG+TGG | 0.572020 | 3_4:+10314599 | Msa0489680:CDS |
| CTGAATCCAAGCAGATTCAT+CGG | 0.574804 | 3_4:-10314714 | None:intergenic |
| GAATCTGCTTGGATTCAGGC+TGG | 0.577913 | 3_4:+10314719 | Msa0489680:CDS |
| TTAAGTTGTTAATTCAGGGG+AGG | 0.578715 | 3_4:-10316563 | None:intergenic |
| AAGGAAGAGAGAGTTAAACT+TGG | 0.579262 | 3_4:-10315881 | None:intergenic |
| AGTAGTAAAACATTAAGAGA+TGG | 0.583925 | 3_4:+10314289 | Msa0489680:exon |
| ACAGGTATATGTCCAAGTGT+TGG | 0.585011 | 3_4:+10315487 | Msa0489680:intron |
| GGTACCTTGGTAAGGAAACA+TGG | 0.585139 | 3_4:+10315541 | Msa0489680:CDS |
| GTGAATACTGTAACAATAGG+TGG | 0.587206 | 3_4:-10315724 | None:intergenic |
| TCAATTTAAGATAACATTTG+GGG | 0.590288 | 3_4:+10316884 | Msa0489680:three_prime_UTR |
| AGTGGTGGCCATGATTATGA+AGG | 0.592283 | 3_4:+10314617 | Msa0489680:CDS |
| CTTATAATGGAACCTTATGG+TGG | 0.592307 | 3_4:+10316174 | Msa0489680:CDS |
| CCAACTGAGCTAAGCTCATG+AGG | 0.592811 | 3_4:+10316680 | Msa0489680:three_prime_UTR |
| GATTGGTGTGCAGATTAGAG+TGG | 0.599674 | 3_4:+10314592 | Msa0489680:CDS |
| CATACAATATATGGTCAAGT+GGG | 0.600319 | 3_4:+10316260 | Msa0489680:CDS |
| TAATTAAGTTGTTAATTCAG+GGG | 0.600580 | 3_4:-10316566 | None:intergenic |
| GCAACAAGTATGACAATACA+AGG | 0.601545 | 3_4:+10316412 | Msa0489680:CDS |
| TACTCAGAAGCAAGTGTTTG+GGG | 0.603811 | 3_4:+10316435 | Msa0489680:CDS |
| GGAGTAGGTGGTCACATCAG+TGG | 0.610281 | 3_4:+10315508 | Msa0489680:CDS |
| CAACCAAGGTGCTTCATAGG+TGG | 0.618350 | 3_4:+10315773 | Msa0489680:CDS |
| GAGAATGCATAATATATGCA+AGG | 0.621414 | 3_4:-10316653 | None:intergenic |
| GCACAAACTAATTACCTGCA+GGG | 0.623757 | 3_4:-10314799 | None:intergenic |
| CAAGATTAATGTCGATCGAA+CGG | 0.627262 | 3_4:-10314691 | None:intergenic |
| ATATGTCCAAGTGTTGGAGT+AGG | 0.632250 | 3_4:+10315493 | Msa0489680:CDS |
| GGTGGACAGGGTTTAAACCC+CGG | 0.634140 | 3_4:+10316629 | Msa0489680:three_prime_UTR |
| ATTGGAACAAGGAGCAACCA+AGG | 0.639041 | 3_4:+10315759 | Msa0489680:CDS |
| CAGGGGAGGGAATTCAGAAG+AGG | 0.643159 | 3_4:-10316549 | None:intergenic |
| GAAGGTGTCATAATGAGAAG+AGG | 0.648177 | 3_4:-10314527 | None:intergenic |
| TAGACCATGTTTCCTTACCA+AGG | 0.652475 | 3_4:-10315545 | None:intergenic |
| CATAATATATGCAAGGTCCG+GGG | 0.664743 | 3_4:-10316646 | None:intergenic |
| TTGCCACCTATGAAGCACCT+TGG | 0.667998 | 3_4:-10315776 | None:intergenic |
| GTAGGTGGTCACATCAGTGG+AGG | 0.669019 | 3_4:+10315511 | Msa0489680:CDS |
| CAGATTAGAGTGGTTAGTGG+TGG | 0.684127 | 3_4:+10314602 | Msa0489680:CDS |
| ATTCAAAGAACATTGGAACA+AGG | 0.701106 | 3_4:+10315748 | Msa0489680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAATATGTAACAAA+CGG | - | chr3_4:10315024-10315043 | None:intergenic | 10.0% |
| !!! | TCATAATAATTTAGTTTTTT+TGG | + | chr3_4:10315126-10315145 | Msa0489680:intron | 10.0% |
| !! | AAAAAAAAAACTATAACAAA+CGG | + | chr3_4:10315299-10315318 | Msa0489680:intron | 10.0% |
| !!! | ATAACAAGTGATATATTTTT+TGG | - | chr3_4:10314252-10314271 | None:intergenic | 15.0% |
| !!! | AAAAATTGATTTTTTGTTTG+AGG | - | chr3_4:10315219-10315238 | None:intergenic | 15.0% |
| !!! | TTTTCTTAAAAAATAACCAA+CGG | + | chr3_4:10315374-10315393 | Msa0489680:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAACCGT+TGG | - | chr3_4:10315393-10315412 | None:intergenic | 15.0% |
| !!! | TTAATTAAGTTGTTAATTCA+GGG | - | chr3_4:10316570-10316589 | None:intergenic | 15.0% |
| !!! | AGCACTTATAATATTTATTT+TGG | + | chr3_4:10316589-10316608 | Msa0489680:three_prime_UTR | 15.0% |
| !!! | ACTTATAATATTTATTTTGG+TGG | + | chr3_4:10316592-10316611 | Msa0489680:three_prime_UTR | 15.0% |
| !!! | CTTATAATATTTATTTTGGT+GGG | + | chr3_4:10316593-10316612 | Msa0489680:three_prime_UTR | 15.0% |
| !!! | TTATAATATTTATTTTGGTG+GGG | + | chr3_4:10316594-10316613 | Msa0489680:three_prime_UTR | 15.0% |
| !!! | TTCAATTTAAGATAACATTT+GGG | + | chr3_4:10316883-10316902 | Msa0489680:three_prime_UTR | 15.0% |
| !!! | ATCTAGTTTTGACTTTATTT+TGG | + | chr3_4:10314997-10315016 | Msa0489680:intron | 20.0% |
| !!! | TAATTAAGTTGTTAATTCAG+GGG | - | chr3_4:10316569-10316588 | None:intergenic | 20.0% |
| !!! | CTTAATTAAGTTGTTAATTC+AGG | - | chr3_4:10316571-10316590 | None:intergenic | 20.0% |
| !!! | TATAATATTTATTTTGGTGG+GGG | + | chr3_4:10316595-10316614 | Msa0489680:three_prime_UTR | 20.0% |
| !!! | GTTCAATTTAAGATAACATT+TGG | + | chr3_4:10316882-10316901 | Msa0489680:three_prime_UTR | 20.0% |
| !!! | TCAATTTAAGATAACATTTG+GGG | + | chr3_4:10316884-10316903 | Msa0489680:three_prime_UTR | 20.0% |
| !!! | TATTTTTTGGTTCTAACAAG+TGG | - | chr3_4:10314239-10314258 | None:intergenic | 25.0% |
| !! | CTTGTTATAACCAAAAAGTT+TGG | + | chr3_4:10314264-10314283 | Msa0489680:five_prime_UTR | 25.0% |
| !! | TTACTACTTTCCAAACTTTT+TGG | - | chr3_4:10314277-10314296 | None:intergenic | 25.0% |
| ! | AGTAGTAAAACATTAAGAGA+TGG | + | chr3_4:10314289-10314308 | Msa0489680:exon | 25.0% |
| ! | ATGAGATCAATCATGATAAA+GGG | - | chr3_4:10314665-10314684 | None:intergenic | 25.0% |
| ! | ATTAAATTGCTTATCCAAAC+AGG | + | chr3_4:10315469-10315488 | Msa0489680:intron | 25.0% |
| !! | TTTTCCCATTTACATCTATA+AGG | - | chr3_4:10315597-10315616 | None:intergenic | 25.0% |
| ! | AATTCTTGATAGAAAAGCAA+TGG | + | chr3_4:10315615-10315634 | Msa0489680:CDS | 25.0% |
| ! | ATTCTTGATAGAAAAGCAAT+GGG | + | chr3_4:10315616-10315635 | Msa0489680:CDS | 25.0% |
| !! | TTAAGTTATCTTTTTCTCCA+AGG | - | chr3_4:10315903-10315922 | None:intergenic | 25.0% |
| ! | CACATTAGCATTACTTATAA+TGG | + | chr3_4:10316161-10316180 | Msa0489680:CDS | 25.0% |
| !! | TTACTTATAATGGAACCTTA+TGG | + | chr3_4:10316171-10316190 | Msa0489680:CDS | 25.0% |
| ! | CTTGTACAACATACAATATA+TGG | + | chr3_4:10316251-10316270 | Msa0489680:CDS | 25.0% |
| ! | ACTTAGAGTATATATGAAGA+TGG | - | chr3_4:10316800-10316819 | None:intergenic | 25.0% |
| !! | AGAGCTTTAACTTCAATATT+TGG | + | chr3_4:10316841-10316860 | Msa0489680:three_prime_UTR | 25.0% |
| !! | GAGCTTTAACTTCAATATTT+GGG | + | chr3_4:10316842-10316861 | Msa0489680:three_prime_UTR | 25.0% |
| CAATACTTGTGGATACAATA+TGG | - | chr3_4:10314462-10314481 | None:intergenic | 30.0% | |
| CATATTGTATCCACAAGTAT+TGG | + | chr3_4:10314460-10314479 | Msa0489680:CDS | 30.0% | |
| TGCTTGAATTTCTGATTCAT+GGG | - | chr3_4:10314552-10314571 | None:intergenic | 30.0% | |
| ! | AATCTTTTTGCTGCATAGTA+TGG | - | chr3_4:10314576-10314595 | None:intergenic | 30.0% |
| ATACTATGCAGCAAAAAGAT+TGG | + | chr3_4:10314575-10314594 | Msa0489680:CDS | 30.0% | |
| GATGAGATCAATCATGATAA+AGG | - | chr3_4:10314666-10314685 | None:intergenic | 30.0% | |
| ! | TCTAAAGCAAGTAAAGTTCA+TGG | + | chr3_4:10314773-10314792 | Msa0489680:CDS | 30.0% |
| !! | ACTTATTTCTATAAGCTCTC+TGG | + | chr3_4:10314942-10314961 | Msa0489680:intron | 30.0% |
| CTCACCTTATAGATGTAAAT+GGG | + | chr3_4:10315590-10315609 | Msa0489680:CDS | 30.0% | |
| !!! | AATGGGAGAAGATGTTTTTT+GGG | + | chr3_4:10315633-10315652 | Msa0489680:CDS | 30.0% |
| ATGGTGAATACTGTAACAAT+AGG | - | chr3_4:10315730-10315749 | None:intergenic | 30.0% | |
| ATTCACCATTCAAAGAACAT+TGG | + | chr3_4:10315741-10315760 | Msa0489680:CDS | 30.0% | |
| TTGTTCCAATGTTCTTTGAA+TGG | - | chr3_4:10315749-10315768 | None:intergenic | 30.0% | |
| ATTCAAAGAACATTGGAACA+AGG | + | chr3_4:10315748-10315767 | Msa0489680:CDS | 30.0% | |
| AGAATAGTTGCTCAAAATAG+TGG | + | chr3_4:10315835-10315854 | Msa0489680:CDS | 30.0% | |
| !! | CAATCAGTTTTGTATTTTGC+AGG | + | chr3_4:10315994-10316013 | Msa0489680:CDS | 30.0% |
| TATTCAGCAAGAGTTCTATA+GGG | - | chr3_4:10316035-10316054 | None:intergenic | 30.0% | |
| ! | CTCTTTTACATAGTCAGATT+TGG | - | chr3_4:10316088-10316107 | None:intergenic | 30.0% |
| ! | TTCCTTTTCTATGTGGAAAA+GGG | - | chr3_4:10316230-10316249 | None:intergenic | 30.0% |
| ! | TTTCCTTTTCTATGTGGAAA+AGG | - | chr3_4:10316231-10316250 | None:intergenic | 30.0% |
| ! | TACAAGTTTCCTTTTCTATG+TGG | - | chr3_4:10316237-10316256 | None:intergenic | 30.0% |
| ACATACAATATATGGTCAAG+TGG | + | chr3_4:10316259-10316278 | Msa0489680:CDS | 30.0% | |
| CATACAATATATGGTCAAGT+GGG | + | chr3_4:10316260-10316279 | Msa0489680:CDS | 30.0% | |
| AATCCAACAAGCATATAAAG+TGG | + | chr3_4:10316301-10316320 | Msa0489680:CDS | 30.0% | |
| AGCTGCATATTACAACTATA+GGG | + | chr3_4:10316374-10316393 | Msa0489680:CDS | 30.0% | |
| AACTATAGGGATCTTGATAT+AGG | + | chr3_4:10316387-10316406 | Msa0489680:CDS | 30.0% | |
| ! | TCATTCCTGAAAAAGTTTTG+GGG | - | chr3_4:10316519-10316538 | None:intergenic | 30.0% |
| ! | CTCATTCCTGAAAAAGTTTT+GGG | - | chr3_4:10316520-10316539 | None:intergenic | 30.0% |
| GAGAATGCATAATATATGCA+AGG | - | chr3_4:10316656-10316675 | None:intergenic | 30.0% | |
| GAACATTTGTTCACTTGAGA+TGG | - | chr3_4:10314196-10314215 | None:intergenic | 35.0% | |
| TTCAGAAAAGCTACTACCTA+TGG | - | chr3_4:10314405-10314424 | None:intergenic | 35.0% | |
| ! | GATAAACACTGTGTTTTCAC+TGG | - | chr3_4:10314429-10314448 | None:intergenic | 35.0% |
| TTCAGTGATTCCAATACTTG+TGG | - | chr3_4:10314473-10314492 | None:intergenic | 35.0% | |
| CACTGAAACAAAATCCAAGA+TGG | + | chr3_4:10314486-10314505 | Msa0489680:CDS | 35.0% | |
| TGAATTTCTGATTCATGGGA+AGG | - | chr3_4:10314548-10314567 | None:intergenic | 35.0% | |
| CTGCTTGAATTTCTGATTCA+TGG | - | chr3_4:10314553-10314572 | None:intergenic | 35.0% | |
| AAGACAGTCCTTCATAATCA+TGG | - | chr3_4:10314628-10314647 | None:intergenic | 35.0% | |
| CAAGATTAATGTCGATCGAA+CGG | - | chr3_4:10314694-10314713 | None:intergenic | 35.0% | |
| GCTCACCTTATAGATGTAAA+TGG | + | chr3_4:10315589-10315608 | Msa0489680:CDS | 35.0% | |
| !!! | CAATGGGAGAAGATGTTTTT+TGG | + | chr3_4:10315632-10315651 | Msa0489680:CDS | 35.0% |
| !!! | GATGTTTTTTGGGCTATTAG+AGG | + | chr3_4:10315643-10315662 | Msa0489680:CDS | 35.0% |
| !!! | GTTTTGGAATCATTCTTGCA+TGG | + | chr3_4:10315680-10315699 | Msa0489680:CDS | 35.0% |
| TCATTCTTGCATGGAAGATA+AGG | + | chr3_4:10315689-10315708 | Msa0489680:CDS | 35.0% | |
| GTGAATACTGTAACAATAGG+TGG | - | chr3_4:10315727-10315746 | None:intergenic | 35.0% | |
| AGAGAGAGTTAAACTTGGTT+TGG | - | chr3_4:10315879-10315898 | None:intergenic | 35.0% | |
| AAGGAAGAGAGAGTTAAACT+TGG | - | chr3_4:10315884-10315903 | None:intergenic | 35.0% | |
| AAGTTTAACTCTCTCTTCCT+TGG | + | chr3_4:10315883-10315902 | Msa0489680:CDS | 35.0% | |
| AATGAGAGTTTCCCTGAATT+AGG | + | chr3_4:10315934-10315953 | Msa0489680:CDS | 35.0% | |
| ATGAGAGTTTCCCTGAATTA+GGG | + | chr3_4:10315935-10315954 | Msa0489680:CDS | 35.0% | |
| AAGACTGCATTGAAATGAGT+TGG | + | chr3_4:10315968-10315987 | Msa0489680:CDS | 35.0% | |
| CTATTCAGCAAGAGTTCTAT+AGG | - | chr3_4:10316036-10316055 | None:intergenic | 35.0% | |
| !! | AAGCTGGTTTAGAAGGTATT+TGG | + | chr3_4:10316118-10316137 | Msa0489680:CDS | 35.0% |
| ! | CTTATAATGGAACCTTATGG+TGG | + | chr3_4:10316174-10316193 | Msa0489680:CDS | 35.0% |
| ! | ATCCCTTTTCCACATAGAAA+AGG | + | chr3_4:10316225-10316244 | Msa0489680:CDS | 35.0% |
| CATCCACTTTATATGCTTGT+TGG | - | chr3_4:10316307-10316326 | None:intergenic | 35.0% | |
| AAGTGGATGAGAATGCTTTA+TGG | + | chr3_4:10316318-10316337 | Msa0489680:CDS | 35.0% | |
| !! | CTTGGAGACTTTGAAACATA+AGG | - | chr3_4:10316354-10316373 | None:intergenic | 35.0% |
| TAGTTGTAATATGCAGCTCT+TGG | - | chr3_4:10316372-10316391 | None:intergenic | 35.0% | |
| GAGCTGCATATTACAACTAT+AGG | + | chr3_4:10316373-10316392 | Msa0489680:CDS | 35.0% | |
| GCAACAAGTATGACAATACA+AGG | + | chr3_4:10316412-10316431 | Msa0489680:CDS | 35.0% | |
| TAAGGGAAACTTTAAGCGAT+TGG | + | chr3_4:10316470-10316489 | Msa0489680:CDS | 35.0% | |
| !! | TTGATCCCCAAAACTTTTTC+AGG | + | chr3_4:10316511-10316530 | Msa0489680:CDS | 35.0% |
| ! | GCTCATTCCTGAAAAAGTTT+TGG | - | chr3_4:10316521-10316540 | None:intergenic | 35.0% |
| TAAGTTGTTAATTCAGGGGA+GGG | - | chr3_4:10316565-10316584 | None:intergenic | 35.0% | |
| ! | TTAAGTTGTTAATTCAGGGG+AGG | - | chr3_4:10316566-10316585 | None:intergenic | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | - | chr3_4:10316651-10316670 | None:intergenic | 35.0% | |
| ATGCAGTGCATGTTAACCAT+AGG | + | chr3_4:10314386-10314405 | Msa0489680:CDS | 40.0% | |
| CTTGATGAATTCAGCCATCT+TGG | - | chr3_4:10314503-10314522 | None:intergenic | 40.0% | |
| !! | GAAGGTGTCATAATGAGAAG+AGG | - | chr3_4:10314530-10314549 | None:intergenic | 40.0% |
| CTGAATCCAAGCAGATTCAT+CGG | - | chr3_4:10314717-10314736 | None:intergenic | 40.0% | |
| GCACAAACTAATTACCTGCA+GGG | - | chr3_4:10314802-10314821 | None:intergenic | 40.0% | |
| AGCACAAACTAATTACCTGC+AGG | - | chr3_4:10314803-10314822 | None:intergenic | 40.0% | |
| CACTTGGACATATACCTGTT+TGG | - | chr3_4:10315486-10315505 | None:intergenic | 40.0% | |
| ACAGGTATATGTCCAAGTGT+TGG | + | chr3_4:10315487-10315506 | Msa0489680:intron | 40.0% | |
| !! | ATATGTCCAAGTGTTGGAGT+AGG | + | chr3_4:10315493-10315512 | Msa0489680:CDS | 40.0% |
| TAGACCATGTTTCCTTACCA+AGG | - | chr3_4:10315548-10315567 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGGGCTATTAGAGG+AGG | + | chr3_4:10315646-10315665 | Msa0489680:CDS | 40.0% |
| TCTTGCATGGAAGATAAGGT+TGG | + | chr3_4:10315693-10315712 | Msa0489680:CDS | 40.0% | |
| TGTCTTGCAACCCTAATTCA+GGG | - | chr3_4:10315948-10315967 | None:intergenic | 40.0% | |
| TTGTCTTGCAACCCTAATTC+AGG | - | chr3_4:10315949-10315968 | None:intergenic | 40.0% | |
| !!! | GGCTTTGAATGAGCTTTTGA+AGG | - | chr3_4:10316067-10316086 | None:intergenic | 40.0% |
| TCTAAACCAGCTTCTGGTAT+AGG | - | chr3_4:10316111-10316130 | None:intergenic | 40.0% | |
| ! | ATACCAGAAGCTGGTTTAGA+AGG | + | chr3_4:10316111-10316130 | Msa0489680:CDS | 40.0% |
| ATACCTTCTAAACCAGCTTC+TGG | - | chr3_4:10316117-10316136 | None:intergenic | 40.0% | |
| TCATTCAGTCTTCCACCATA+AGG | - | chr3_4:10316189-10316208 | None:intergenic | 40.0% | |
| GTACTCAGAAGCAAGTGTTT+GGG | + | chr3_4:10316434-10316453 | Msa0489680:CDS | 40.0% | |
| TACTCAGAAGCAAGTGTTTG+GGG | + | chr3_4:10316435-10316454 | Msa0489680:CDS | 40.0% | |
| ! | TTGGGGCATCAAGTACTTTA+AGG | + | chr3_4:10316452-10316471 | Msa0489680:CDS | 40.0% |
| ! | TGGGGCATCAAGTACTTTAA+GGG | + | chr3_4:10316453-10316472 | Msa0489680:CDS | 40.0% |
| !! | ATTTTGGTGGGGGACTATTT+TGG | + | chr3_4:10316605-10316624 | Msa0489680:three_prime_UTR | 40.0% |
| CATAATATATGCAAGGTCCG+GGG | - | chr3_4:10316649-10316668 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr3_4:10316650-10316669 | None:intergenic | 40.0% | |
| GATTGGTGTGCAGATTAGAG+TGG | + | chr3_4:10314592-10314611 | Msa0489680:CDS | 45.0% | |
| GTGCAGATTAGAGTGGTTAG+TGG | + | chr3_4:10314599-10314618 | Msa0489680:CDS | 45.0% | |
| CAGATTAGAGTGGTTAGTGG+TGG | + | chr3_4:10314602-10314621 | Msa0489680:CDS | 45.0% | |
| AGTGGTGGCCATGATTATGA+AGG | + | chr3_4:10314617-10314636 | Msa0489680:CDS | 45.0% | |
| ATCTTGCCGATGAATCTGCT+TGG | + | chr3_4:10314708-10314727 | Msa0489680:CDS | 45.0% | |
| CGATGAATCTGCTTGGATTC+AGG | + | chr3_4:10314715-10314734 | Msa0489680:CDS | 45.0% | |
| ATTCAGGCTGGTGCAACATT+AGG | + | chr3_4:10314731-10314750 | Msa0489680:CDS | 45.0% | |
| AAAGTTCATGGATTCCCTGC+AGG | + | chr3_4:10314785-10314804 | Msa0489680:CDS | 45.0% | |
| GGTACCTTGGTAAGGAAACA+TGG | + | chr3_4:10315541-10315560 | Msa0489680:CDS | 45.0% | |
| !! | GGAGGTAGTGCTACTAGTTT+TGG | + | chr3_4:10315664-10315683 | Msa0489680:CDS | 45.0% |
| ATTGGAACAAGGAGCAACCA+AGG | + | chr3_4:10315759-10315778 | Msa0489680:CDS | 45.0% | |
| AAAGAGCCTATACCAGAAGC+TGG | + | chr3_4:10316102-10316121 | Msa0489680:CDS | 45.0% | |
| GGTACTCAGAAGCAAGTGTT+TGG | + | chr3_4:10316433-10316452 | Msa0489680:CDS | 45.0% | |
| !!! | GACTATTTTGGTGGTGGACA+GGG | + | chr3_4:10316617-10316636 | Msa0489680:three_prime_UTR | 45.0% |
| TGAGCTTAGCTCAGTTGGTT+TGG | - | chr3_4:10316678-10316697 | None:intergenic | 45.0% | |
| GAATCTGCTTGGATTCAGGC+TGG | + | chr3_4:10314719-10314738 | Msa0489680:CDS | 50.0% | |
| !! | TGTCCAAGTGTTGGAGTAGG+TGG | + | chr3_4:10315496-10315515 | Msa0489680:CDS | 50.0% |
| TGACCACCTACTCCAACACT+TGG | - | chr3_4:10315502-10315521 | None:intergenic | 50.0% | |
| !! | GTGGCTTTGGTACCTTGGTA+AGG | + | chr3_4:10315533-10315552 | Msa0489680:CDS | 50.0% |
| ! | GAGCAACCAAGGTGCTTCAT+AGG | + | chr3_4:10315770-10315789 | Msa0489680:CDS | 50.0% |
| ! | CAACCAAGGTGCTTCATAGG+TGG | + | chr3_4:10315773-10315792 | Msa0489680:CDS | 50.0% |
| ! | TTGCCACCTATGAAGCACCT+TGG | - | chr3_4:10315779-10315798 | None:intergenic | 50.0% |
| !! | TTGGTGGGGGACTATTTTGG+TGG | + | chr3_4:10316608-10316627 | Msa0489680:three_prime_UTR | 50.0% |
| !!! | GGACTATTTTGGTGGTGGAC+AGG | + | chr3_4:10316616-10316635 | Msa0489680:three_prime_UTR | 50.0% |
| CCTCATGAGCTTAGCTCAGT+TGG | - | chr3_4:10316683-10316702 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCATG+AGG | + | chr3_4:10316680-10316699 | Msa0489680:three_prime_UTR | 50.0% | |
| GGAGTAGGTGGTCACATCAG+TGG | + | chr3_4:10315508-10315527 | Msa0489680:CDS | 55.0% | |
| GTAGGTGGTCACATCAGTGG+AGG | + | chr3_4:10315511-10315530 | Msa0489680:CDS | 55.0% | |
| CACATCAGTGGAGGTGGCTT+TGG | + | chr3_4:10315520-10315539 | Msa0489680:CDS | 55.0% | |
| !! | TGGAGGTGGCTTTGGTACCT+TGG | + | chr3_4:10315528-10315547 | Msa0489680:CDS | 55.0% |
| CAGGGGAGGGAATTCAGAAG+AGG | - | chr3_4:10316552-10316571 | None:intergenic | 55.0% | |
| !!! | GTGGGGGACTATTTTGGTGG+TGG | + | chr3_4:10316611-10316630 | Msa0489680:three_prime_UTR | 55.0% |
| GGTGGACAGGGTTTAAACCC+CGG | + | chr3_4:10316629-10316648 | Msa0489680:three_prime_UTR | 55.0% | |
| GGTGGTCACATCAGTGGAGG+TGG | + | chr3_4:10315514-10315533 | Msa0489680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10314192 | 10316931 | 10314192 | ID=Msa0489680;Name=Msa0489680 |
| chr3_4 | mRNA | 10314192 | 10316931 | 10314192 | ID=Msa0489680-mRNA-1;Parent=Msa0489680;Name=Msa0489680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=116|1|1|1|1|1|2|359|526 |
| chr3_4 | exon | 10314192 | 10314806 | 10314192 | ID=Msa0489680-mRNA-1:exon:3340;Parent=Msa0489680-mRNA-1 |
| chr3_4 | exon | 10315491 | 10316931 | 10315491 | ID=Msa0489680-mRNA-1:exon:3341;Parent=Msa0489680-mRNA-1 |
| chr3_4 | five_prime_UTR | 10314192 | 10314307 | 10314192 | ID=Msa0489680-mRNA-1:five_prime_utr;Parent=Msa0489680-mRNA-1 |
| chr3_4 | CDS | 10314308 | 10314806 | 10314308 | ID=Msa0489680-mRNA-1:cds;Parent=Msa0489680-mRNA-1 |
| chr3_4 | CDS | 10315491 | 10316572 | 10315491 | ID=Msa0489680-mRNA-1:cds;Parent=Msa0489680-mRNA-1 |
| chr3_4 | three_prime_UTR | 10316573 | 10316931 | 10316573 | ID=Msa0489680-mRNA-1:three_prime_utr;Parent=Msa0489680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
