Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442170 | XP_003598276.1 | 94.106 | 526 | 31 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1005 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442170 | sp|Q9SUC6|BBE22_ARATH | 61.319 | 455 | 172 | 4 | 70 | 522 | 77 | 529 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442170 | G7J0C2 | 94.106 | 526 | 31 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1005 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0442170 | Msa0489680 | 0.874888 | 4.747567e-68 | -8.615850e-47 |
| Msa0442170 | Msa0651320 | 0.806643 | 7.444477e-50 | -8.615850e-47 |
| Msa0347560 | Msa0442170 | 0.908485 | 1.624635e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442170 | MtrunA17_Chr3g0079791 | 94.106 | 526 | 31 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1005 |
| Msa0442170 | MtrunA17_Chr3g0079801 | 94.297 | 526 | 30 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1004 |
| Msa0442170 | MtrunA17_Chr3g0079831 | 87.429 | 525 | 64 | 1 | 1 | 525 | 17 | 539 | 0.0 | 926 |
| Msa0442170 | MtrunA17_Chr2g0292971 | 53.425 | 511 | 227 | 6 | 19 | 522 | 23 | 529 | 0.0 | 579 |
| Msa0442170 | MtrunA17_Chr4g0051211 | 57.419 | 465 | 188 | 4 | 69 | 523 | 8 | 472 | 0.0 | 572 |
| Msa0442170 | MtrunA17_Chr4g0051421 | 55.075 | 532 | 222 | 7 | 3 | 520 | 7 | 535 | 0.0 | 570 |
| Msa0442170 | MtrunA17_Chr4g0051421 | 54.935 | 537 | 224 | 8 | 2 | 524 | 545 | 1077 | 0.0 | 557 |
| Msa0442170 | MtrunA17_Chr2g0292991 | 56.439 | 528 | 218 | 8 | 1 | 523 | 8 | 528 | 0.0 | 566 |
| Msa0442170 | MtrunA17_Chr2g0293021 | 56.084 | 526 | 215 | 8 | 1 | 519 | 8 | 524 | 0.0 | 566 |
| Msa0442170 | MtrunA17_Chr4g0051541 | 55.906 | 508 | 211 | 8 | 23 | 522 | 28 | 530 | 0.0 | 556 |
| Msa0442170 | MtrunA17_Chr4g0051381 | 52.820 | 532 | 238 | 6 | 2 | 522 | 6 | 535 | 0.0 | 552 |
| Msa0442170 | MtrunA17_Chr4g0051551 | 51.705 | 528 | 244 | 8 | 1 | 522 | 36 | 558 | 0.0 | 548 |
| Msa0442170 | MtrunA17_Chr2g0293121 | 49.427 | 524 | 257 | 5 | 4 | 522 | 3 | 523 | 0.0 | 545 |
| Msa0442170 | MtrunA17_Chr4g0051411 | 51.509 | 530 | 244 | 7 | 2 | 520 | 6 | 533 | 0.0 | 536 |
| Msa0442170 | MtrunA17_Chr4g0051441 | 48.759 | 564 | 243 | 7 | 2 | 524 | 58 | 616 | 0.0 | 528 |
| Msa0442170 | MtrunA17_Chr2g0293161 | 49.156 | 533 | 255 | 9 | 1 | 522 | 5 | 532 | 0.0 | 523 |
| Msa0442170 | MtrunA17_Chr2g0293191 | 49.257 | 538 | 252 | 10 | 1 | 522 | 31 | 563 | 0.0 | 522 |
| Msa0442170 | MtrunA17_Chr2g0293041 | 46.967 | 511 | 257 | 7 | 21 | 522 | 35 | 540 | 3.86e-165 | 479 |
| Msa0442170 | MtrunA17_Chr2g0293031 | 44.256 | 531 | 286 | 5 | 1 | 522 | 9 | 538 | 6.56e-165 | 478 |
| Msa0442170 | MtrunA17_Chr4g0028611 | 46.360 | 522 | 273 | 4 | 1 | 520 | 33 | 549 | 4.01e-162 | 471 |
| Msa0442170 | MtrunA17_Chr4g0048311 | 48.425 | 508 | 249 | 9 | 24 | 522 | 37 | 540 | 3.40e-161 | 469 |
| Msa0442170 | MtrunA17_Chr4g0048361 | 46.958 | 526 | 265 | 7 | 1 | 520 | 7 | 524 | 4.25e-161 | 468 |
| Msa0442170 | MtrunA17_Chr4g0051531 | 47.103 | 535 | 268 | 8 | 1 | 524 | 624 | 1154 | 6.37e-160 | 484 |
| Msa0442170 | MtrunA17_Chr4g0051531 | 46.935 | 522 | 259 | 9 | 10 | 520 | 24 | 538 | 1.98e-152 | 465 |
| Msa0442170 | MtrunA17_Chr4g0046581 | 47.758 | 513 | 248 | 7 | 24 | 524 | 31 | 535 | 1.14e-159 | 465 |
| Msa0442170 | MtrunA17_Chr4g0048351 | 45.849 | 530 | 267 | 9 | 1 | 520 | 20 | 539 | 1.74e-159 | 465 |
| Msa0442170 | MtrunA17_Chr6g0457031 | 46.565 | 524 | 262 | 8 | 7 | 520 | 9 | 524 | 7.20e-159 | 463 |
| Msa0442170 | MtrunA17_Chr6g0457061 | 46.756 | 524 | 261 | 8 | 7 | 520 | 9 | 524 | 2.35e-158 | 461 |
| Msa0442170 | MtrunA17_Chr3g0079821 | 88.793 | 232 | 26 | 0 | 295 | 526 | 1 | 232 | 1.88e-152 | 435 |
| Msa0442170 | MtrunA17_Chr2g0288611 | 46.957 | 460 | 236 | 5 | 70 | 524 | 12 | 468 | 1.73e-144 | 424 |
| Msa0442170 | MtrunA17_Chr1g0188271 | 43.579 | 475 | 257 | 7 | 54 | 519 | 60 | 532 | 1.56e-126 | 380 |
| Msa0442170 | MtrunA17_Chr4g0048331 | 45.320 | 406 | 202 | 7 | 119 | 520 | 2 | 391 | 2.92e-126 | 374 |
| Msa0442170 | MtrunA17_Chr2g0320381 | 76.812 | 69 | 12 | 1 | 164 | 232 | 48 | 112 | 1.57e-29 | 112 |
| Msa0442170 | MtrunA17_Chr2g0320371 | 91.111 | 45 | 4 | 0 | 122 | 166 | 1 | 45 | 8.42e-22 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442170 | AT4G20860.1 | 61.319 | 455 | 172 | 4 | 70 | 522 | 77 | 529 | 0.0 | 577 |
| Msa0442170 | AT5G44360.2 | 56.226 | 514 | 198 | 11 | 23 | 522 | 46 | 546 | 0.0 | 553 |
| Msa0442170 | AT5G44360.1 | 56.226 | 514 | 198 | 11 | 23 | 522 | 30 | 530 | 0.0 | 552 |
| Msa0442170 | AT5G44400.1 | 53.861 | 531 | 228 | 12 | 4 | 520 | 7 | 534 | 0.0 | 550 |
| Msa0442170 | AT2G34790.1 | 50.471 | 531 | 235 | 9 | 5 | 520 | 11 | 528 | 0.0 | 541 |
| Msa0442170 | AT5G44390.1 | 52.591 | 521 | 232 | 12 | 13 | 522 | 24 | 540 | 0.0 | 536 |
| Msa0442170 | AT1G30760.2 | 53.045 | 509 | 222 | 9 | 21 | 520 | 48 | 548 | 0.0 | 533 |
| Msa0442170 | AT1G30760.1 | 53.045 | 509 | 222 | 9 | 21 | 520 | 30 | 530 | 0.0 | 532 |
| Msa0442170 | AT5G44380.1 | 50.763 | 524 | 243 | 11 | 9 | 520 | 17 | 537 | 9.57e-169 | 488 |
| Msa0442170 | AT5G44380.2 | 50.763 | 524 | 243 | 11 | 9 | 520 | 57 | 577 | 1.71e-168 | 489 |
| Msa0442170 | AT5G44440.1 | 46.904 | 533 | 269 | 9 | 2 | 525 | 5 | 532 | 4.32e-168 | 486 |
| Msa0442170 | AT1G26420.1 | 47.826 | 529 | 257 | 8 | 1 | 520 | 5 | 523 | 1.20e-167 | 485 |
| Msa0442170 | AT4G20820.1 | 47.195 | 517 | 258 | 9 | 8 | 520 | 19 | 524 | 1.98e-167 | 485 |
| Msa0442170 | AT5G44440.2 | 46.904 | 533 | 269 | 9 | 2 | 525 | 75 | 602 | 6.92e-167 | 486 |
| Msa0442170 | AT1G26380.1 | 47.170 | 530 | 263 | 7 | 2 | 522 | 4 | 525 | 9.06e-163 | 473 |
| Msa0442170 | AT1G26410.1 | 50.000 | 478 | 228 | 6 | 48 | 520 | 76 | 547 | 2.79e-162 | 472 |
| Msa0442170 | AT5G44410.1 | 46.604 | 530 | 267 | 8 | 1 | 522 | 8 | 529 | 5.34e-161 | 468 |
| Msa0442170 | AT1G26390.1 | 49.478 | 479 | 231 | 6 | 48 | 520 | 52 | 525 | 3.69e-160 | 466 |
| Msa0442170 | AT1G26400.1 | 47.093 | 516 | 265 | 6 | 8 | 519 | 10 | 521 | 1.42e-158 | 462 |
| Msa0442170 | AT1G30710.1 | 44.972 | 527 | 277 | 8 | 4 | 524 | 11 | 530 | 9.50e-157 | 457 |
| Msa0442170 | AT1G30700.1 | 47.535 | 507 | 252 | 8 | 24 | 522 | 26 | 526 | 1.65e-156 | 457 |
| Msa0442170 | AT1G34575.1 | 44.318 | 528 | 269 | 10 | 4 | 521 | 11 | 523 | 1.32e-155 | 454 |
| Msa0442170 | AT1G11770.1 | 42.884 | 534 | 288 | 8 | 4 | 526 | 6 | 533 | 5.76e-153 | 448 |
| Msa0442170 | AT1G01980.1 | 44.551 | 523 | 274 | 9 | 15 | 526 | 21 | 538 | 4.10e-152 | 446 |
| Msa0442170 | AT4G20840.1 | 44.181 | 507 | 272 | 7 | 22 | 522 | 34 | 535 | 2.11e-150 | 442 |
| Msa0442170 | AT4G20800.1 | 48.283 | 466 | 233 | 5 | 60 | 520 | 61 | 523 | 5.09e-150 | 440 |
| Msa0442170 | AT1G30730.1 | 44.701 | 519 | 278 | 6 | 8 | 521 | 10 | 524 | 1.47e-149 | 439 |
| Msa0442170 | AT1G30740.2 | 44.402 | 518 | 279 | 7 | 11 | 522 | 17 | 531 | 3.97e-147 | 433 |
| Msa0442170 | AT1G30740.1 | 44.402 | 518 | 279 | 7 | 11 | 522 | 14 | 528 | 4.93e-147 | 433 |
| Msa0442170 | AT4G20830.2 | 44.814 | 511 | 273 | 7 | 19 | 524 | 32 | 538 | 6.31e-147 | 433 |
| Msa0442170 | AT4G20830.1 | 44.794 | 509 | 272 | 7 | 19 | 522 | 32 | 536 | 5.63e-146 | 431 |
| Msa0442170 | AT2G34810.1 | 43.327 | 517 | 283 | 6 | 15 | 522 | 24 | 539 | 5.15e-143 | 423 |
| Msa0442170 | AT1G30720.1 | 42.023 | 514 | 289 | 6 | 13 | 521 | 16 | 525 | 1.05e-138 | 411 |
Find 117 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCTTTAACTTCAATATT+TGG | 0.122008 | 3_3:+11594312 | Msa0442170:three_prime_UTR |
| AGCACTTATAATATTTATTT+TGG | 0.156288 | 3_3:+11594060 | Msa0442170:three_prime_UTR |
| TTGGGGCATCAAGTACTTTA+AGG | 0.182488 | 3_3:+11593923 | Msa0442170:CDS |
| CTTAATTAAGTTGTTAATTC+AGG | 0.183749 | 3_3:-11594039 | None:intergenic |
| AAGCTGGTTTAGAAGGTATT+TGG | 0.194170 | 3_3:+11593589 | Msa0442170:CDS |
| GCTCACCTTATAGATGTAAA+TGG | 0.201621 | 3_3:+11593060 | Msa0442170:CDS |
| AATGAGAGTTTCCCTGAATT+AGG | 0.214946 | 3_3:+11593405 | Msa0442170:CDS |
| CACATTAGCATTACTTATAA+TGG | 0.248787 | 3_3:+11593632 | Msa0442170:CDS |
| TTGTCTTGCAACCCTAATTC+AGG | 0.255332 | 3_3:-11593417 | None:intergenic |
| CATCCACTTTATATGCTTGT+TGG | 0.273212 | 3_3:-11593775 | None:intergenic |
| CGATGAATCTGCTTGGATTC+AGG | 0.282488 | 3_3:+11592207 | Msa0442170:CDS |
| GGAGGTAGTGCTACTAGTTT+TGG | 0.283804 | 3_3:+11593135 | Msa0442170:CDS |
| GAGCTTTAACTTCAATATTT+GGG | 0.286998 | 3_3:+11594313 | Msa0442170:three_prime_UTR |
| AAGTGGATGAGAATGCTTTA+TGG | 0.287403 | 3_3:+11593789 | Msa0442170:CDS |
| GTTCAATTTAAGATAACATT+TGG | 0.293632 | 3_3:+11594353 | Msa0442170:three_prime_UTR |
| GAGCTGCATATTACAACTAT+AGG | 0.298398 | 3_3:+11593844 | Msa0442170:CDS |
| CTGCTTGAATTTCTGATTCA+TGG | 0.298655 | 3_3:-11592042 | None:intergenic |
| CTATTCAGCAAGAGTTCTAT+AGG | 0.301114 | 3_3:-11593504 | None:intergenic |
| CTTGATGAATTCAGCCATCT+TGG | 0.311842 | 3_3:-11591992 | None:intergenic |
| TTCAATTTAAGATAACATTT+GGG | 0.337017 | 3_3:+11594354 | Msa0442170:three_prime_UTR |
| CAATACTTGTGGATACAATA+TGG | 0.349912 | 3_3:-11591951 | None:intergenic |
| AGAGAGAGTTAAACTTGGTT+TGG | 0.351945 | 3_3:-11593347 | None:intergenic |
| ATGAGAGTTTCCCTGAATTA+GGG | 0.357011 | 3_3:+11593406 | Msa0442170:CDS |
| CACATCAGTGGAGGTGGCTT+TGG | 0.360702 | 3_3:+11592991 | Msa0442170:CDS |
| TCTAAACCAGCTTCTGGTAT+AGG | 0.365053 | 3_3:-11593579 | None:intergenic |
| TGAGCTTAGCTCAGTTGGTT+TGG | 0.367087 | 3_3:-11594146 | None:intergenic |
| TCTAAAGCAAGTAAAGTTCA+TGG | 0.367121 | 3_3:+11592265 | Msa0442170:CDS |
| GGTACTCAGAAGCAAGTGTT+TGG | 0.380263 | 3_3:+11593904 | Msa0442170:CDS |
| ATTCAGGCTGGTGCAACATT+AGG | 0.380469 | 3_3:+11592223 | Msa0442170:CDS |
| TTGTTCCAATGTTCTTTGAA+TGG | 0.398919 | 3_3:-11593217 | None:intergenic |
| TCATTCAGTCTTCCACCATA+TGG | 0.401879 | 3_3:-11593657 | None:intergenic |
| TGGGGCATCAAGTACTTTAA+GGG | 0.402731 | 3_3:+11593924 | Msa0442170:CDS |
| AACCCTGTCCACCACCAAAA+TGG | 0.403988 | 3_3:-11594090 | None:intergenic |
| ATACCTTCTAAACCAGCTTC+TGG | 0.406374 | 3_3:-11593585 | None:intergenic |
| ATACCAGAAGCTGGTTTAGA+AGG | 0.411336 | 3_3:+11593582 | Msa0442170:CDS |
| CTTGGAGACTTTGAAACATA+AGG | 0.412215 | 3_3:-11593822 | None:intergenic |
| CTTGTACAACATACAATATA+TGG | 0.415255 | 3_3:+11593722 | Msa0442170:CDS |
| AGCTGCATATTACAACTATA+GGG | 0.426482 | 3_3:+11593845 | Msa0442170:CDS |
| TGCATAATATATGCAAGGTC+CGG | 0.430117 | 3_3:-11594119 | None:intergenic |
| CATATTGTATCCACAAGTAT+TGG | 0.430537 | 3_3:+11591952 | Msa0442170:CDS |
| GTACTCAGAAGCAAGTGTTT+GGG | 0.433402 | 3_3:+11593905 | Msa0442170:CDS |
| GATGAGATCAATCATGATAA+AGG | 0.434881 | 3_3:-11592155 | None:intergenic |
| TGGAGGTGGCTTTGGTACCT+TGG | 0.438981 | 3_3:+11592999 | Msa0442170:CDS |
| AAGTTTAACTCTCTCTTCCT+TGG | 0.446047 | 3_3:+11593354 | Msa0442170:CDS |
| CTATGTATTGCCACCTATGA+AGG | 0.446403 | 3_3:-11593254 | None:intergenic |
| CCTCATGAGCTTAGCTCAGT+TGG | 0.447530 | 3_3:-11594151 | None:intergenic |
| AGAATAGTTGCTCAAAATAG+TGG | 0.457619 | 3_3:+11593306 | Msa0442170:CDS |
| TCATTCTTGCATGGAAGATA+AGG | 0.459271 | 3_3:+11593160 | Msa0442170:CDS |
| CTCACCTTATAGATGTAAAT+GGG | 0.461407 | 3_3:+11593061 | Msa0442170:CDS |
| GAGCAACCAAAGTCCTTCAT+AGG | 0.462089 | 3_3:+11593241 | Msa0442170:CDS |
| AATTCTTGATAGAAAATCAA+TGG | 0.470027 | 3_3:+11593086 | Msa0442170:CDS |
| TAAGGGAAACTTTAAGCGAT+TGG | 0.470910 | 3_3:+11593941 | Msa0442170:CDS |
| AACTATAGGGATCTTGATAT+AGG | 0.475447 | 3_3:+11593858 | Msa0442170:CDS |
| TTAATTAAGTTGTTAATTCA+GGG | 0.475592 | 3_3:-11594038 | None:intergenic |
| TGTCTTGCAACCCTAATTCA+GGG | 0.475992 | 3_3:-11593416 | None:intergenic |
| AAGACTGCATTGAAATGAGT+TGG | 0.478707 | 3_3:+11593439 | Msa0442170:CDS |
| ATGAGATCAATCATGATAAA+GGG | 0.478729 | 3_3:-11592154 | None:intergenic |
| TAAGTTGTTAATTCAGGGGA+GGG | 0.480193 | 3_3:-11594033 | None:intergenic |
| TATTCAGCAAGAGTTCTATA+GGG | 0.484064 | 3_3:-11593503 | None:intergenic |
| ATCTTGCCGATGAATCTGCT+TGG | 0.489037 | 3_3:+11592200 | Msa0442170:CDS |
| TTCAGTGATTCCAATACTTG+TGG | 0.491607 | 3_3:-11591962 | None:intergenic |
| TTCAGAAAAGCTACTACCTA+TGG | 0.493468 | 3_3:-11591894 | None:intergenic |
| GCATAATATATGCAAGGTCC+GGG | 0.494408 | 3_3:-11594118 | None:intergenic |
| TGCTTGAATTTCTGATTCAT+GGG | 0.498893 | 3_3:-11592041 | None:intergenic |
| AAGACAGTCCTTCATAATCA+TGG | 0.503011 | 3_3:-11592117 | None:intergenic |
| TAGTTGTAATATGCAGCTCT+TGG | 0.503584 | 3_3:-11593840 | None:intergenic |
| AATCCAACAAGCATATAAAG+TGG | 0.509234 | 3_3:+11593772 | Msa0442170:CDS |
| GAACATTTGTTCACTTGAGA+TGG | 0.520398 | 3_3:-11591685 | None:intergenic |
| TTGCCACCTATGAAGGACTT+TGG | 0.520543 | 3_3:-11593247 | None:intergenic |
| ATTCTTGATAGAAAATCAAT+GGG | 0.522100 | 3_3:+11593087 | Msa0442170:CDS |
| GTGGCTTTGGTACCTTGGTA+AGG | 0.531498 | 3_3:+11593004 | Msa0442170:CDS |
| TGACCACCTACTCCAACACT+TGG | 0.537412 | 3_3:-11592970 | None:intergenic |
| AAAGTTCATGGATTCCCTGC+AGG | 0.538278 | 3_3:+11592277 | Msa0442170:CDS |
| TTACTTATAATGGAACCATA+TGG | 0.538421 | 3_3:+11593642 | Msa0442170:CDS |
| ATGGTGAATACTGTAACAAT+AGG | 0.540272 | 3_3:-11593198 | None:intergenic |
| TCTTGCATGGAAGATAAGGT+TGG | 0.542256 | 3_3:+11593164 | Msa0442170:CDS |
| ATGCAGTGCATGTTAACCAT+AGG | 0.544066 | 3_3:+11591878 | Msa0442170:CDS |
| CACTGAAACAAAATCCAAGA+TGG | 0.547598 | 3_3:+11591978 | Msa0442170:CDS |
| ATTCACCATTCAAAGAACAT+TGG | 0.547935 | 3_3:+11593212 | Msa0442170:CDS |
| GGTGGTCACATCAGTGGAGG+TGG | 0.552995 | 3_3:+11592985 | Msa0442170:CDS |
| TGTCCAAGTGTTGGAGTAGG+TGG | 0.561626 | 3_3:+11592967 | Msa0442170:CDS |
| AAAGAGCCTATACCAGAAGC+TGG | 0.561825 | 3_3:+11593573 | Msa0442170:CDS |
| TGAATTTCTGATTCATGGGA+AGG | 0.564377 | 3_3:-11592037 | None:intergenic |
| ACTTAGAGTATATATGAAGA+TGG | 0.565586 | 3_3:-11594268 | None:intergenic |
| ACATACAATATATGGTCAAG+TGG | 0.568366 | 3_3:+11593730 | Msa0442170:CDS |
| GTGCAGATTAGAGTGGTTAG+TGG | 0.572020 | 3_3:+11592091 | Msa0442170:CDS |
| CTGAATCCAAGCAGATTCAT+CGG | 0.574804 | 3_3:-11592206 | None:intergenic |
| GAATCTGCTTGGATTCAGGC+TGG | 0.577913 | 3_3:+11592211 | Msa0442170:CDS |
| TTAAGTTGTTAATTCAGGGG+AGG | 0.578715 | 3_3:-11594034 | None:intergenic |
| AAGGAAGAGAGAGTTAAACT+TGG | 0.579262 | 3_3:-11593352 | None:intergenic |
| AGTAGTAAAACATTAAGAGA+TGG | 0.583925 | 3_3:+11591781 | Msa0442170:exon |
| ACAGGTATATGTCCAAGTGT+TGG | 0.585011 | 3_3:+11592958 | Msa0442170:intron |
| GGTACCTTGGTAAGGAAACA+TGG | 0.585139 | 3_3:+11593012 | Msa0442170:CDS |
| GTGAATACTGTAACAATAGG+TGG | 0.587206 | 3_3:-11593195 | None:intergenic |
| TCAATTTAAGATAACATTTG+GGG | 0.590288 | 3_3:+11594355 | Msa0442170:three_prime_UTR |
| AGTGGTGGCCATGATTATGA+AGG | 0.592283 | 3_3:+11592109 | Msa0442170:CDS |
| CCAACTGAGCTAAGCTCATG+AGG | 0.592811 | 3_3:+11594151 | Msa0442170:three_prime_UTR |
| GATTGGTGTGCAGATTAGAG+TGG | 0.599674 | 3_3:+11592084 | Msa0442170:CDS |
| CATACAATATATGGTCAAGT+GGG | 0.600319 | 3_3:+11593731 | Msa0442170:CDS |
| TAATTAAGTTGTTAATTCAG+GGG | 0.600580 | 3_3:-11594037 | None:intergenic |
| GCAACAAGTATGACAATACA+AGG | 0.601545 | 3_3:+11593883 | Msa0442170:CDS |
| TACTCAGAAGCAAGTGTTTG+GGG | 0.603811 | 3_3:+11593906 | Msa0442170:CDS |
| GGAGTAGGTGGTCACATCAG+TGG | 0.610281 | 3_3:+11592979 | Msa0442170:CDS |
| GAGAATGCATAATATATGCA+AGG | 0.621414 | 3_3:-11594124 | None:intergenic |
| CTTATAATGGAACCATATGG+TGG | 0.625352 | 3_3:+11593645 | Msa0442170:CDS |
| CAAGATTAATGTCGATCGAA+CGG | 0.627262 | 3_3:-11592183 | None:intergenic |
| CAACCAAAGTCCTTCATAGG+TGG | 0.627397 | 3_3:+11593244 | Msa0442170:CDS |
| ATATGTCCAAGTGTTGGAGT+AGG | 0.632250 | 3_3:+11592964 | Msa0442170:CDS |
| GGTGGACAGGGTTTAAACCC+CGG | 0.634140 | 3_3:+11594100 | Msa0442170:three_prime_UTR |
| GCTCAAACTAATTACCTGCA+GGG | 0.638432 | 3_3:-11592291 | None:intergenic |
| CAGGGGAGGGAATTCAGAAG+AGG | 0.643159 | 3_3:-11594020 | None:intergenic |
| GAAGGTGTCATAATGAGAAG+AGG | 0.648177 | 3_3:-11592019 | None:intergenic |
| TAGACCATGTTTCCTTACCA+AGG | 0.652475 | 3_3:-11593016 | None:intergenic |
| CATAATATATGCAAGGTCCG+GGG | 0.664743 | 3_3:-11594117 | None:intergenic |
| GTAGGTGGTCACATCAGTGG+AGG | 0.669019 | 3_3:+11592982 | Msa0442170:CDS |
| CAGATTAGAGTGGTTAGTGG+TGG | 0.684127 | 3_3:+11592094 | Msa0442170:CDS |
| ATTCAAAGAACATTGGAACA+AGG | 0.701106 | 3_3:+11593219 | Msa0442170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAATATGTAACAAA+CGG | - | chr3_3:11592516-11592535 | None:intergenic | 10.0% |
| !!! | TCATAATAATTTAGTTTTTT+TGG | + | chr3_3:11592617-11592636 | Msa0442170:intron | 10.0% |
| !! | AAAAAAAAAACTATAACAAA+CGG | + | chr3_3:11592791-11592810 | Msa0442170:intron | 10.0% |
| !!! | ATTTTCTTTTTTATAAAAAG+TGG | + | chr3_3:11592839-11592858 | Msa0442170:intron | 10.0% |
| !!! | ATAACAAGTGATATATTTTT+TGG | - | chr3_3:11591744-11591763 | None:intergenic | 15.0% |
| !!! | AAAAATTGATTTTTTGTTTG+AGG | - | chr3_3:11592711-11592730 | None:intergenic | 15.0% |
| !!! | TTAATTAAGTTGTTAATTCA+GGG | - | chr3_3:11594041-11594060 | None:intergenic | 15.0% |
| !!! | AGCACTTATAATATTTATTT+TGG | + | chr3_3:11594060-11594079 | Msa0442170:three_prime_UTR | 15.0% |
| !!! | ACTTATAATATTTATTTTGG+TGG | + | chr3_3:11594063-11594082 | Msa0442170:three_prime_UTR | 15.0% |
| !!! | CTTATAATATTTATTTTGGT+GGG | + | chr3_3:11594064-11594083 | Msa0442170:three_prime_UTR | 15.0% |
| !!! | TTATAATATTTATTTTGGTG+GGG | + | chr3_3:11594065-11594084 | Msa0442170:three_prime_UTR | 15.0% |
| !!! | TTCAATTTAAGATAACATTT+GGG | + | chr3_3:11594354-11594373 | Msa0442170:three_prime_UTR | 15.0% |
| !!! | ATCTAGTTTTGACTTTATTT+TGG | + | chr3_3:11592489-11592508 | Msa0442170:intron | 20.0% |
| !! | AATTCTTGATAGAAAATCAA+TGG | + | chr3_3:11593086-11593105 | Msa0442170:CDS | 20.0% |
| !! | ATTCTTGATAGAAAATCAAT+GGG | + | chr3_3:11593087-11593106 | Msa0442170:CDS | 20.0% |
| !!! | TAATTAAGTTGTTAATTCAG+GGG | - | chr3_3:11594040-11594059 | None:intergenic | 20.0% |
| !!! | CTTAATTAAGTTGTTAATTC+AGG | - | chr3_3:11594042-11594061 | None:intergenic | 20.0% |
| !!! | TATAATATTTATTTTGGTGG+GGG | + | chr3_3:11594066-11594085 | Msa0442170:three_prime_UTR | 20.0% |
| !!! | GTTCAATTTAAGATAACATT+TGG | + | chr3_3:11594353-11594372 | Msa0442170:three_prime_UTR | 20.0% |
| !!! | TCAATTTAAGATAACATTTG+GGG | + | chr3_3:11594355-11594374 | Msa0442170:three_prime_UTR | 20.0% |
| !!! | TATTTTTTGGTTCTAACAAG+TGG | - | chr3_3:11591731-11591750 | None:intergenic | 25.0% |
| !! | CTTGTTATAACCAAAAAGTT+TGG | + | chr3_3:11591756-11591775 | Msa0442170:five_prime_UTR | 25.0% |
| !! | TTACTACTTTCCAAACTTTT+TGG | - | chr3_3:11591769-11591788 | None:intergenic | 25.0% |
| ! | AGTAGTAAAACATTAAGAGA+TGG | + | chr3_3:11591781-11591800 | Msa0442170:exon | 25.0% |
| ! | ATGAGATCAATCATGATAAA+GGG | - | chr3_3:11592157-11592176 | None:intergenic | 25.0% |
| ! | ATTAAATTGCTTATCCAAAC+AGG | + | chr3_3:11592940-11592959 | Msa0442170:intron | 25.0% |
| !! | TTTTCCCATTTACATCTATA+AGG | - | chr3_3:11593068-11593087 | None:intergenic | 25.0% |
| !! | TTAAGTTATCTTTTTCTCCA+AGG | - | chr3_3:11593374-11593393 | None:intergenic | 25.0% |
| ! | CACATTAGCATTACTTATAA+TGG | + | chr3_3:11593632-11593651 | Msa0442170:CDS | 25.0% |
| !! | TTACTTATAATGGAACCATA+TGG | + | chr3_3:11593642-11593661 | Msa0442170:CDS | 25.0% |
| ! | CTTGTACAACATACAATATA+TGG | + | chr3_3:11593722-11593741 | Msa0442170:CDS | 25.0% |
| ! | ACTTAGAGTATATATGAAGA+TGG | - | chr3_3:11594271-11594290 | None:intergenic | 25.0% |
| !! | AGAGCTTTAACTTCAATATT+TGG | + | chr3_3:11594312-11594331 | Msa0442170:three_prime_UTR | 25.0% |
| !! | GAGCTTTAACTTCAATATTT+GGG | + | chr3_3:11594313-11594332 | Msa0442170:three_prime_UTR | 25.0% |
| CAATACTTGTGGATACAATA+TGG | - | chr3_3:11591954-11591973 | None:intergenic | 30.0% | |
| CATATTGTATCCACAAGTAT+TGG | + | chr3_3:11591952-11591971 | Msa0442170:CDS | 30.0% | |
| TGCTTGAATTTCTGATTCAT+GGG | - | chr3_3:11592044-11592063 | None:intergenic | 30.0% | |
| ! | AATCTTTTTGCTGCATAGTA+TGG | - | chr3_3:11592068-11592087 | None:intergenic | 30.0% |
| ATACTATGCAGCAAAAAGAT+TGG | + | chr3_3:11592067-11592086 | Msa0442170:CDS | 30.0% | |
| GATGAGATCAATCATGATAA+AGG | - | chr3_3:11592158-11592177 | None:intergenic | 30.0% | |
| ! | TCTAAAGCAAGTAAAGTTCA+TGG | + | chr3_3:11592265-11592284 | Msa0442170:CDS | 30.0% |
| !! | ACTTATTTCTATAAGCTCTC+TGG | + | chr3_3:11592434-11592453 | Msa0442170:intron | 30.0% |
| CTCACCTTATAGATGTAAAT+GGG | + | chr3_3:11593061-11593080 | Msa0442170:CDS | 30.0% | |
| !!! | AATGGGAGAAGATGTTTTTT+GGG | + | chr3_3:11593104-11593123 | Msa0442170:CDS | 30.0% |
| ATGGTGAATACTGTAACAAT+AGG | - | chr3_3:11593201-11593220 | None:intergenic | 30.0% | |
| ATTCACCATTCAAAGAACAT+TGG | + | chr3_3:11593212-11593231 | Msa0442170:CDS | 30.0% | |
| TTGTTCCAATGTTCTTTGAA+TGG | - | chr3_3:11593220-11593239 | None:intergenic | 30.0% | |
| ATTCAAAGAACATTGGAACA+AGG | + | chr3_3:11593219-11593238 | Msa0442170:CDS | 30.0% | |
| AGAATAGTTGCTCAAAATAG+TGG | + | chr3_3:11593306-11593325 | Msa0442170:CDS | 30.0% | |
| !! | CAATCAGTTTTGTATTTTGC+AGG | + | chr3_3:11593465-11593484 | Msa0442170:CDS | 30.0% |
| TATTCAGCAAGAGTTCTATA+GGG | - | chr3_3:11593506-11593525 | None:intergenic | 30.0% | |
| ! | CTCTTTTACATAGTCAGATT+TGG | - | chr3_3:11593559-11593578 | None:intergenic | 30.0% |
| ! | TTCCTTTTCTATGTGGAAAA+GGG | - | chr3_3:11593701-11593720 | None:intergenic | 30.0% |
| ! | TTTCCTTTTCTATGTGGAAA+AGG | - | chr3_3:11593702-11593721 | None:intergenic | 30.0% |
| ! | TACAAGTTTCCTTTTCTATG+TGG | - | chr3_3:11593708-11593727 | None:intergenic | 30.0% |
| ACATACAATATATGGTCAAG+TGG | + | chr3_3:11593730-11593749 | Msa0442170:CDS | 30.0% | |
| CATACAATATATGGTCAAGT+GGG | + | chr3_3:11593731-11593750 | Msa0442170:CDS | 30.0% | |
| AATCCAACAAGCATATAAAG+TGG | + | chr3_3:11593772-11593791 | Msa0442170:CDS | 30.0% | |
| AGCTGCATATTACAACTATA+GGG | + | chr3_3:11593845-11593864 | Msa0442170:CDS | 30.0% | |
| AACTATAGGGATCTTGATAT+AGG | + | chr3_3:11593858-11593877 | Msa0442170:CDS | 30.0% | |
| ! | TCATTCCTGAAAAAGTTTTG+GGG | - | chr3_3:11593990-11594009 | None:intergenic | 30.0% |
| ! | CTCATTCCTGAAAAAGTTTT+GGG | - | chr3_3:11593991-11594010 | None:intergenic | 30.0% |
| GAGAATGCATAATATATGCA+AGG | - | chr3_3:11594127-11594146 | None:intergenic | 30.0% | |
| GAACATTTGTTCACTTGAGA+TGG | - | chr3_3:11591688-11591707 | None:intergenic | 35.0% | |
| TTCAGAAAAGCTACTACCTA+TGG | - | chr3_3:11591897-11591916 | None:intergenic | 35.0% | |
| ! | GATAAACACTGTGTTTTCAC+TGG | - | chr3_3:11591921-11591940 | None:intergenic | 35.0% |
| TTCAGTGATTCCAATACTTG+TGG | - | chr3_3:11591965-11591984 | None:intergenic | 35.0% | |
| CACTGAAACAAAATCCAAGA+TGG | + | chr3_3:11591978-11591997 | Msa0442170:CDS | 35.0% | |
| TGAATTTCTGATTCATGGGA+AGG | - | chr3_3:11592040-11592059 | None:intergenic | 35.0% | |
| CTGCTTGAATTTCTGATTCA+TGG | - | chr3_3:11592045-11592064 | None:intergenic | 35.0% | |
| AAGACAGTCCTTCATAATCA+TGG | - | chr3_3:11592120-11592139 | None:intergenic | 35.0% | |
| CAAGATTAATGTCGATCGAA+CGG | - | chr3_3:11592186-11592205 | None:intergenic | 35.0% | |
| GCTCACCTTATAGATGTAAA+TGG | + | chr3_3:11593060-11593079 | Msa0442170:CDS | 35.0% | |
| !!! | CAATGGGAGAAGATGTTTTT+TGG | + | chr3_3:11593103-11593122 | Msa0442170:CDS | 35.0% |
| !!! | GATGTTTTTTGGGCTATTAG+AGG | + | chr3_3:11593114-11593133 | Msa0442170:CDS | 35.0% |
| !!! | GTTTTGGAATCATTCTTGCA+TGG | + | chr3_3:11593151-11593170 | Msa0442170:CDS | 35.0% |
| TCATTCTTGCATGGAAGATA+AGG | + | chr3_3:11593160-11593179 | Msa0442170:CDS | 35.0% | |
| GTGAATACTGTAACAATAGG+TGG | - | chr3_3:11593198-11593217 | None:intergenic | 35.0% | |
| AGAGAGAGTTAAACTTGGTT+TGG | - | chr3_3:11593350-11593369 | None:intergenic | 35.0% | |
| AAGGAAGAGAGAGTTAAACT+TGG | - | chr3_3:11593355-11593374 | None:intergenic | 35.0% | |
| AAGTTTAACTCTCTCTTCCT+TGG | + | chr3_3:11593354-11593373 | Msa0442170:CDS | 35.0% | |
| AATGAGAGTTTCCCTGAATT+AGG | + | chr3_3:11593405-11593424 | Msa0442170:CDS | 35.0% | |
| ATGAGAGTTTCCCTGAATTA+GGG | + | chr3_3:11593406-11593425 | Msa0442170:CDS | 35.0% | |
| AAGACTGCATTGAAATGAGT+TGG | + | chr3_3:11593439-11593458 | Msa0442170:CDS | 35.0% | |
| CTATTCAGCAAGAGTTCTAT+AGG | - | chr3_3:11593507-11593526 | None:intergenic | 35.0% | |
| !! | AAGCTGGTTTAGAAGGTATT+TGG | + | chr3_3:11593589-11593608 | Msa0442170:CDS | 35.0% |
| ! | CTTATAATGGAACCATATGG+TGG | + | chr3_3:11593645-11593664 | Msa0442170:CDS | 35.0% |
| ! | ATCCCTTTTCCACATAGAAA+AGG | + | chr3_3:11593696-11593715 | Msa0442170:CDS | 35.0% |
| CATCCACTTTATATGCTTGT+TGG | - | chr3_3:11593778-11593797 | None:intergenic | 35.0% | |
| AAGTGGATGAGAATGCTTTA+TGG | + | chr3_3:11593789-11593808 | Msa0442170:CDS | 35.0% | |
| !! | CTTGGAGACTTTGAAACATA+AGG | - | chr3_3:11593825-11593844 | None:intergenic | 35.0% |
| TAGTTGTAATATGCAGCTCT+TGG | - | chr3_3:11593843-11593862 | None:intergenic | 35.0% | |
| GAGCTGCATATTACAACTAT+AGG | + | chr3_3:11593844-11593863 | Msa0442170:CDS | 35.0% | |
| GCAACAAGTATGACAATACA+AGG | + | chr3_3:11593883-11593902 | Msa0442170:CDS | 35.0% | |
| TAAGGGAAACTTTAAGCGAT+TGG | + | chr3_3:11593941-11593960 | Msa0442170:CDS | 35.0% | |
| !! | TTGATCCCCAAAACTTTTTC+AGG | + | chr3_3:11593982-11594001 | Msa0442170:CDS | 35.0% |
| ! | GCTCATTCCTGAAAAAGTTT+TGG | - | chr3_3:11593992-11594011 | None:intergenic | 35.0% |
| TAAGTTGTTAATTCAGGGGA+GGG | - | chr3_3:11594036-11594055 | None:intergenic | 35.0% | |
| ! | TTAAGTTGTTAATTCAGGGG+AGG | - | chr3_3:11594037-11594056 | None:intergenic | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | - | chr3_3:11594122-11594141 | None:intergenic | 35.0% | |
| ATGCAGTGCATGTTAACCAT+AGG | + | chr3_3:11591878-11591897 | Msa0442170:CDS | 40.0% | |
| CTTGATGAATTCAGCCATCT+TGG | - | chr3_3:11591995-11592014 | None:intergenic | 40.0% | |
| !! | GAAGGTGTCATAATGAGAAG+AGG | - | chr3_3:11592022-11592041 | None:intergenic | 40.0% |
| CTGAATCCAAGCAGATTCAT+CGG | - | chr3_3:11592209-11592228 | None:intergenic | 40.0% | |
| GCTCAAACTAATTACCTGCA+GGG | - | chr3_3:11592294-11592313 | None:intergenic | 40.0% | |
| AGCTCAAACTAATTACCTGC+AGG | - | chr3_3:11592295-11592314 | None:intergenic | 40.0% | |
| CACTTGGACATATACCTGTT+TGG | - | chr3_3:11592957-11592976 | None:intergenic | 40.0% | |
| ACAGGTATATGTCCAAGTGT+TGG | + | chr3_3:11592958-11592977 | Msa0442170:intron | 40.0% | |
| !! | ATATGTCCAAGTGTTGGAGT+AGG | + | chr3_3:11592964-11592983 | Msa0442170:CDS | 40.0% |
| TAGACCATGTTTCCTTACCA+AGG | - | chr3_3:11593019-11593038 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGGGCTATTAGAGG+AGG | + | chr3_3:11593117-11593136 | Msa0442170:CDS | 40.0% |
| TCTTGCATGGAAGATAAGGT+TGG | + | chr3_3:11593164-11593183 | Msa0442170:CDS | 40.0% | |
| CTATGTATTGCCACCTATGA+AGG | - | chr3_3:11593257-11593276 | None:intergenic | 40.0% | |
| TGTCTTGCAACCCTAATTCA+GGG | - | chr3_3:11593419-11593438 | None:intergenic | 40.0% | |
| TTGTCTTGCAACCCTAATTC+AGG | - | chr3_3:11593420-11593439 | None:intergenic | 40.0% | |
| !!! | GGCTTTGAATGAGCTTTTGA+AGG | - | chr3_3:11593538-11593557 | None:intergenic | 40.0% |
| TCTAAACCAGCTTCTGGTAT+AGG | - | chr3_3:11593582-11593601 | None:intergenic | 40.0% | |
| ! | ATACCAGAAGCTGGTTTAGA+AGG | + | chr3_3:11593582-11593601 | Msa0442170:CDS | 40.0% |
| ATACCTTCTAAACCAGCTTC+TGG | - | chr3_3:11593588-11593607 | None:intergenic | 40.0% | |
| TCATTCAGTCTTCCACCATA+TGG | - | chr3_3:11593660-11593679 | None:intergenic | 40.0% | |
| GTACTCAGAAGCAAGTGTTT+GGG | + | chr3_3:11593905-11593924 | Msa0442170:CDS | 40.0% | |
| TACTCAGAAGCAAGTGTTTG+GGG | + | chr3_3:11593906-11593925 | Msa0442170:CDS | 40.0% | |
| ! | TTGGGGCATCAAGTACTTTA+AGG | + | chr3_3:11593923-11593942 | Msa0442170:CDS | 40.0% |
| ! | TGGGGCATCAAGTACTTTAA+GGG | + | chr3_3:11593924-11593943 | Msa0442170:CDS | 40.0% |
| CATAATATATGCAAGGTCCG+GGG | - | chr3_3:11594120-11594139 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr3_3:11594121-11594140 | None:intergenic | 40.0% | |
| GATTGGTGTGCAGATTAGAG+TGG | + | chr3_3:11592084-11592103 | Msa0442170:CDS | 45.0% | |
| GTGCAGATTAGAGTGGTTAG+TGG | + | chr3_3:11592091-11592110 | Msa0442170:CDS | 45.0% | |
| CAGATTAGAGTGGTTAGTGG+TGG | + | chr3_3:11592094-11592113 | Msa0442170:CDS | 45.0% | |
| AGTGGTGGCCATGATTATGA+AGG | + | chr3_3:11592109-11592128 | Msa0442170:CDS | 45.0% | |
| ATCTTGCCGATGAATCTGCT+TGG | + | chr3_3:11592200-11592219 | Msa0442170:CDS | 45.0% | |
| CGATGAATCTGCTTGGATTC+AGG | + | chr3_3:11592207-11592226 | Msa0442170:CDS | 45.0% | |
| ATTCAGGCTGGTGCAACATT+AGG | + | chr3_3:11592223-11592242 | Msa0442170:CDS | 45.0% | |
| AAAGTTCATGGATTCCCTGC+AGG | + | chr3_3:11592277-11592296 | Msa0442170:CDS | 45.0% | |
| GGTACCTTGGTAAGGAAACA+TGG | + | chr3_3:11593012-11593031 | Msa0442170:CDS | 45.0% | |
| !! | GGAGGTAGTGCTACTAGTTT+TGG | + | chr3_3:11593135-11593154 | Msa0442170:CDS | 45.0% |
| GAGCAACCAAAGTCCTTCAT+AGG | + | chr3_3:11593241-11593260 | Msa0442170:CDS | 45.0% | |
| CAACCAAAGTCCTTCATAGG+TGG | + | chr3_3:11593244-11593263 | Msa0442170:CDS | 45.0% | |
| TTGCCACCTATGAAGGACTT+TGG | - | chr3_3:11593250-11593269 | None:intergenic | 45.0% | |
| AAAGAGCCTATACCAGAAGC+TGG | + | chr3_3:11593573-11593592 | Msa0442170:CDS | 45.0% | |
| GGTACTCAGAAGCAAGTGTT+TGG | + | chr3_3:11593904-11593923 | Msa0442170:CDS | 45.0% | |
| !! | ATTTTGGTGGGGGACCATTT+TGG | + | chr3_3:11594076-11594095 | Msa0442170:three_prime_UTR | 45.0% |
| TGAGCTTAGCTCAGTTGGTT+TGG | - | chr3_3:11594149-11594168 | None:intergenic | 45.0% | |
| GAATCTGCTTGGATTCAGGC+TGG | + | chr3_3:11592211-11592230 | Msa0442170:CDS | 50.0% | |
| !! | TGTCCAAGTGTTGGAGTAGG+TGG | + | chr3_3:11592967-11592986 | Msa0442170:CDS | 50.0% |
| TGACCACCTACTCCAACACT+TGG | - | chr3_3:11592973-11592992 | None:intergenic | 50.0% | |
| !! | GTGGCTTTGGTACCTTGGTA+AGG | + | chr3_3:11593004-11593023 | Msa0442170:CDS | 50.0% |
| !!! | GACCATTTTGGTGGTGGACA+GGG | + | chr3_3:11594088-11594107 | Msa0442170:three_prime_UTR | 50.0% |
| AACCCTGTCCACCACCAAAA+TGG | - | chr3_3:11594093-11594112 | None:intergenic | 50.0% | |
| CCTCATGAGCTTAGCTCAGT+TGG | - | chr3_3:11594154-11594173 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCATG+AGG | + | chr3_3:11594151-11594170 | Msa0442170:three_prime_UTR | 50.0% | |
| GGAGTAGGTGGTCACATCAG+TGG | + | chr3_3:11592979-11592998 | Msa0442170:CDS | 55.0% | |
| GTAGGTGGTCACATCAGTGG+AGG | + | chr3_3:11592982-11593001 | Msa0442170:CDS | 55.0% | |
| CACATCAGTGGAGGTGGCTT+TGG | + | chr3_3:11592991-11593010 | Msa0442170:CDS | 55.0% | |
| !! | TGGAGGTGGCTTTGGTACCT+TGG | + | chr3_3:11592999-11593018 | Msa0442170:CDS | 55.0% |
| CAGGGGAGGGAATTCAGAAG+AGG | - | chr3_3:11594023-11594042 | None:intergenic | 55.0% | |
| ! | TTGGTGGGGGACCATTTTGG+TGG | + | chr3_3:11594079-11594098 | Msa0442170:three_prime_UTR | 55.0% |
| !!! | GGACCATTTTGGTGGTGGAC+AGG | + | chr3_3:11594087-11594106 | Msa0442170:three_prime_UTR | 55.0% |
| GGTGGACAGGGTTTAAACCC+CGG | + | chr3_3:11594100-11594119 | Msa0442170:three_prime_UTR | 55.0% | |
| GGTGGTCACATCAGTGGAGG+TGG | + | chr3_3:11592985-11593004 | Msa0442170:CDS | 60.0% | |
| !! | GTGGGGGACCATTTTGGTGG+TGG | + | chr3_3:11594082-11594101 | Msa0442170:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 11591684 | 11594402 | 11591684 | ID=Msa0442170;Name=Msa0442170 |
| chr3_3 | mRNA | 11591684 | 11594402 | 11591684 | ID=Msa0442170-mRNA-1;Parent=Msa0442170;Name=Msa0442170-mRNA-1;_AED=0.31;_eAED=0.31;_QI=116|1|1|1|1|1|2|359|526 |
| chr3_3 | exon | 11591684 | 11592298 | 11591684 | ID=Msa0442170-mRNA-1:exon:2456;Parent=Msa0442170-mRNA-1 |
| chr3_3 | exon | 11592962 | 11594402 | 11592962 | ID=Msa0442170-mRNA-1:exon:2457;Parent=Msa0442170-mRNA-1 |
| chr3_3 | five_prime_UTR | 11591684 | 11591799 | 11591684 | ID=Msa0442170-mRNA-1:five_prime_utr;Parent=Msa0442170-mRNA-1 |
| chr3_3 | CDS | 11591800 | 11592298 | 11591800 | ID=Msa0442170-mRNA-1:cds;Parent=Msa0442170-mRNA-1 |
| chr3_3 | CDS | 11592962 | 11594043 | 11592962 | ID=Msa0442170-mRNA-1:cds;Parent=Msa0442170-mRNA-1 |
| chr3_3 | three_prime_UTR | 11594044 | 11594402 | 11594044 | ID=Msa0442170-mRNA-1:three_prime_utr;Parent=Msa0442170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
