Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350010 | XP_024635851.1 | 93.985 | 399 | 23 | 1 | 1 | 398 | 1 | 399 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350010 | A0A396ILZ2 | 93.985 | 399 | 23 | 1 | 1 | 398 | 1 | 399 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0350010 | Msa0409960 | 0.800761 | 1.238355e-48 | -8.615850e-47 |
| Msa0350010 | Msa0645570 | 0.810094 | 1.367069e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350010 | MtrunA17_Chr3g0084341 | 93.985 | 399 | 23 | 1 | 1 | 398 | 1 | 399 | 0.0 | 764 |
| Msa0350010 | MtrunA17_Chr4g0046731 | 85.662 | 272 | 39 | 0 | 1 | 272 | 1 | 272 | 2.68e-159 | 449 |
| Msa0350010 | MtrunA17_Chr1g0169631 | 96.429 | 28 | 1 | 0 | 21 | 48 | 3 | 30 | 1.13e-13 | 66.2 |
| Msa0350010 | MtrunA17_Chr1g0148071 | 89.286 | 28 | 3 | 0 | 21 | 48 | 31 | 58 | 3.79e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350010 | AT1G50910.1 | 56.400 | 250 | 105 | 3 | 3 | 250 | 4 | 251 | 5.37e-80 | 254 |
| Msa0350010 | AT1G50910.2 | 48.000 | 100 | 48 | 3 | 153 | 250 | 11 | 108 | 1.36e-18 | 86.7 |
Find 89 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGGTGAGGAGGGATTTA+AGG | 0.196911 | 3_1:+14490923 | Msa0350010:intron |
| GGGACTTTCTGTGACAATTA+TGG | 0.254227 | 3_1:+14493386 | Msa0350010:CDS |
| CACTTTCATTTCCCATGAAA+TGG | 0.276175 | 3_1:-14494725 | None:intergenic |
| AAAAGATGAATCTTCTGTTT+TGG | 0.292424 | 3_1:-14491012 | None:intergenic |
| CTTCATAAGATGCTGGAAAT+AGG | 0.297223 | 3_1:-14490674 | None:intergenic |
| GCTAGCACGTCTACGAGTTT+TGG | 0.318715 | 3_1:+14493413 | Msa0350010:CDS |
| GGCTAAGTCATTCCATTTCA+TGG | 0.322372 | 3_1:+14494713 | Msa0350010:CDS |
| TCCAGAAAACGCAGACTTGC+CGG | 0.340267 | 3_1:+14489314 | Msa0350010:five_prime_UTR |
| GCTTCTGCAGTTGGCAAACT+TGG | 0.355509 | 3_1:+14490945 | Msa0350010:CDS |
| ACATGAGAGGAAGCATAAAA+AGG | 0.361049 | 3_1:+14493999 | Msa0350010:CDS |
| GACACTATCGAGTCTATTCT+TGG | 0.365745 | 3_1:+14494087 | Msa0350010:CDS |
| CACCCTCTGGTGAAGATTCA+TGG | 0.372177 | 3_1:-14494551 | None:intergenic |
| TTTGGTGGTACTGTTATAGT+AGG | 0.383045 | 3_1:+14494883 | Msa0350010:three_prime_UTR |
| CGCAGACTTGCCGGCGGAGT+TGG | 0.399549 | 3_1:+14489323 | Msa0350010:five_prime_UTR |
| TCTTGTATACCAATCTTTCA+AGG | 0.403473 | 3_1:-14490627 | None:intergenic |
| AATCTTTCTGTTCAAGCATC+AGG | 0.410309 | 3_1:+14494054 | Msa0350010:CDS |
| CAAACTTGGAGGAGCTTGTA+AGG | 0.419593 | 3_1:+14490959 | Msa0350010:CDS |
| ACTTAGAAAAGACTATCCTT+TGG | 0.420675 | 3_1:-14494804 | None:intergenic |
| ATGTTACATTAGAGTGTGTC+TGG | 0.424478 | 3_1:+14493956 | Msa0350010:CDS |
| AAATGCCACCTTCTTCGAAC+TGG | 0.436578 | 3_1:-14494619 | None:intergenic |
| GACCAACATGACTCGGAAAC+AGG | 0.441955 | 3_1:+14494375 | Msa0350010:CDS |
| GAAATACTATGTACACTTTG+TGG | 0.442654 | 3_1:-14494669 | None:intergenic |
| ACACTATCGAGTCTATTCTT+GGG | 0.448985 | 3_1:+14494088 | Msa0350010:CDS |
| TACTGAATTTGAAACAATTG+AGG | 0.464733 | 3_1:+14490558 | Msa0350010:CDS |
| AAAACTTGATTTATTATGAA+AGG | 0.468064 | 3_1:+14494906 | Msa0350010:three_prime_UTR |
| CTATTTCCAGCATCTTATGA+AGG | 0.472658 | 3_1:+14490675 | Msa0350010:CDS |
| AATAGGAACAGCGGCGGTGC+TGG | 0.473487 | 3_1:-14490657 | None:intergenic |
| GGATTTAAGGCTTCTGCAGT+TGG | 0.473619 | 3_1:+14490936 | Msa0350010:CDS |
| AATAACTCATGAGGGAATAG+AGG | 0.478056 | 3_1:+14493753 | Msa0350010:CDS |
| AGCAGATGCTGCAGCTAAAG+AGG | 0.485173 | 3_1:+14494401 | Msa0350010:CDS |
| ACACTTTGTGGCACTAATGT+AGG | 0.485190 | 3_1:-14494657 | None:intergenic |
| ACTGTGTTTGGTAGTGAGGA+AGG | 0.486974 | 3_1:+14494495 | Msa0350010:CDS |
| TACGTTGCAGCCTTCAGCAT+TGG | 0.487150 | 3_1:-14492707 | None:intergenic |
| TAATCATCGTCATCACTAGC+AGG | 0.490176 | 3_1:-14493934 | None:intergenic |
| AATAATGGAATAACCTGGAC+TGG | 0.494596 | 3_1:-14489351 | None:intergenic |
| TCTGCAGTTGGCAAACTTGG+AGG | 0.495185 | 3_1:+14490948 | Msa0350010:CDS |
| GCATTATCACAGTCTTCAAC+CGG | 0.498106 | 3_1:+14494582 | Msa0350010:CDS |
| GGAGACTGTGTTTGGTAGTG+AGG | 0.498718 | 3_1:+14494491 | Msa0350010:CDS |
| ACTTCATTCCAGTTCGAAGA+AGG | 0.500157 | 3_1:+14494611 | Msa0350010:CDS |
| TATAGATTGCAAGGATTCGA+TGG | 0.506587 | 3_1:+14490534 | Msa0350010:exon |
| GCAGATAATAGTTCTGCTGT+TGG | 0.508419 | 3_1:+14490510 | Msa0350010:intron |
| GAAAATGCAATGATGAAAAG+AGG | 0.510608 | 3_1:+14491763 | Msa0350010:CDS |
| CTGGTAATTATTAGGTGAGG+AGG | 0.514481 | 3_1:+14490914 | Msa0350010:intron |
| TGTTTCATGACAGCTTGAAA+AGG | 0.514585 | 3_1:+14491739 | Msa0350010:intron |
| GCTAAGTCATTCCATTTCAT+GGG | 0.519660 | 3_1:+14494714 | Msa0350010:CDS |
| ATGGAATAACCTGGACTGGA+TGG | 0.519747 | 3_1:-14489347 | None:intergenic |
| ACTGAATTTGAAACAATTGA+GGG | 0.522339 | 3_1:+14490559 | Msa0350010:CDS |
| CACCTGTTTCCGAGTCATGT+TGG | 0.526003 | 3_1:-14494377 | None:intergenic |
| TGGTAATTATTAGGTGAGGA+GGG | 0.526601 | 3_1:+14490915 | Msa0350010:intron |
| CATTGTTGATTTGTTCAACA+TGG | 0.528069 | 3_1:+14493696 | Msa0350010:CDS |
| GCTGTTGGATATAGATTGCA+AGG | 0.528144 | 3_1:+14490525 | Msa0350010:five_prime_UTR |
| TAAAATCATCGATTTGCGAC+GGG | 0.534590 | 3_1:-14494467 | None:intergenic |
| TATGTTAACTAGCAATGCTA+AGG | 0.535051 | 3_1:+14494692 | Msa0350010:CDS |
| CACTATCGAGTCTATTCTTG+GGG | 0.541164 | 3_1:+14494089 | Msa0350010:CDS |
| TACATACCTTCATAAGATGC+TGG | 0.545040 | 3_1:-14490681 | None:intergenic |
| GTGTGGTATCCTTGAAAGAT+TGG | 0.545641 | 3_1:+14490618 | Msa0350010:CDS |
| CAAGGATACCACACTCACAT+TGG | 0.546295 | 3_1:-14490609 | None:intergenic |
| TTTGTATCCTTGACATGAGA+GGG | 0.550661 | 3_1:-14494426 | None:intergenic |
| TGCAGATGACCAACATGACT+CGG | 0.572731 | 3_1:+14494368 | Msa0350010:intron |
| GAAAGTCAAGGCGAGGACAC+TGG | 0.573431 | 3_1:+14494027 | Msa0350010:CDS |
| CTCCATGAATCTTCACCAGA+GGG | 0.573969 | 3_1:+14494549 | Msa0350010:CDS |
| GGAGTTGGTCCATCCAGTCC+AGG | 0.577778 | 3_1:+14489338 | Msa0350010:five_prime_UTR |
| AATGCATGCAAGTCACCCTC+TGG | 0.581592 | 3_1:-14494564 | None:intergenic |
| GTGTTTGGTAGTGAGGAAGG+AGG | 0.586867 | 3_1:+14494498 | Msa0350010:CDS |
| ATTTGTATCCTTGACATGAG+AGG | 0.589182 | 3_1:-14494427 | None:intergenic |
| ACTGGATGGACCAACTCCGC+CGG | 0.592590 | 3_1:-14489333 | None:intergenic |
| TCATTCCAGTTCGAAGAAGG+TGG | 0.593091 | 3_1:+14494614 | Msa0350010:CDS |
| ACTGGAATGAAGTTTGCTGC+CGG | 0.602347 | 3_1:-14494601 | None:intergenic |
| ATCAAACAAAAGATGACAGA+GGG | 0.608251 | 3_1:+14494748 | Msa0350010:CDS |
| ACTTACTAATGTAAATCCAA+AGG | 0.608539 | 3_1:+14494788 | Msa0350010:CDS |
| TGGTGAAGATTCATGGAGAG+AGG | 0.611678 | 3_1:-14494544 | None:intergenic |
| ATAAGTATATATTACATGAG+AGG | 0.617541 | 3_1:+14493986 | Msa0350010:CDS |
| AGAGGATCCCTCTCATGTCA+AGG | 0.618102 | 3_1:+14494419 | Msa0350010:CDS |
| ATAAAATCATCGATTTGCGA+CGG | 0.620309 | 3_1:-14494468 | None:intergenic |
| ATAGATTGCAAGGATTCGAT+GGG | 0.626054 | 3_1:+14490535 | Msa0350010:exon |
| ATCTGCACGACTACTAGAAG+AGG | 0.629442 | 3_1:+14491809 | Msa0350010:CDS |
| TCGCAGCTCCAATGTGAGTG+TGG | 0.635804 | 3_1:+14490601 | Msa0350010:CDS |
| TCTCCATGAATCTTCACCAG+AGG | 0.640554 | 3_1:+14494548 | Msa0350010:CDS |
| GGAGAATGAAAGTCAAGGCG+AGG | 0.644705 | 3_1:+14494020 | Msa0350010:CDS |
| AATCATCGTCATCACTAGCA+GGG | 0.646401 | 3_1:-14493933 | None:intergenic |
| GAAGCACGCTGTGCAACACA+AGG | 0.650602 | 3_1:-14489263 | None:intergenic |
| GATGGTTGAACCAATGCTGA+AGG | 0.663541 | 3_1:+14492697 | Msa0350010:intron |
| GTCGTGCAGATCCTAAAAGA+CGG | 0.669319 | 3_1:-14491797 | None:intergenic |
| AGTCAAGGCGAGGACACTGG+TGG | 0.679939 | 3_1:+14494030 | Msa0350010:CDS |
| GATGCTGGAAATAGGAACAG+CGG | 0.692299 | 3_1:-14490666 | None:intergenic |
| GATCAAACAAAAGATGACAG+AGG | 0.693765 | 3_1:+14494747 | Msa0350010:CDS |
| GCTGGAAATAGGAACAGCGG+CGG | 0.714092 | 3_1:-14490663 | None:intergenic |
| AGAAAACGCAGACTTGCCGG+CGG | 0.731506 | 3_1:+14489317 | Msa0350010:five_prime_UTR |
| ACTATCGAGTCTATTCTTGG+GGG | 0.749201 | 3_1:+14494090 | Msa0350010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAACAAAATTAAAATAA+TGG | - | chr3_1:14489369-14489388 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTATTTTTTACTA+GGG | - | chr3_1:14490271-14490290 | None:intergenic | 10.0% |
| !!! | ATAATCATAGTTTTTTTTTT+TGG | + | chr3_1:14492428-14492447 | Msa0350010:intron | 10.0% |
| !! | AATTATAATACATAAAACAT+GGG | - | chr3_1:14493455-14493474 | None:intergenic | 10.0% |
| !! | AAATTATAATACATAAAACA+TGG | - | chr3_1:14493456-14493475 | None:intergenic | 10.0% |
| !!! | AATTTAATTTAATTTTGTCA+AGG | + | chr3_1:14493471-14493490 | Msa0350010:intron | 10.0% |
| !! | CAAAAAAAATTATACTTTAG+AGG | + | chr3_1:14490100-14490119 | Msa0350010:intron | 15.0% |
| !!! | CATTAGTTTTATTTTTTACT+AGG | - | chr3_1:14490272-14490291 | None:intergenic | 15.0% |
| !! | AAAATAAAACTAATGTCAAA+TGG | + | chr3_1:14490277-14490296 | Msa0350010:intron | 15.0% |
| !! | TCAAAATATGATGTTATTAT+AGG | + | chr3_1:14491676-14491695 | Msa0350010:intron | 15.0% |
| !!! | GATTTTTTGTTATGAATTTT+TGG | + | chr3_1:14494865-14494884 | Msa0350010:three_prime_UTR | 15.0% |
| !! | AAAACTTGATTTATTATGAA+AGG | + | chr3_1:14494906-14494925 | Msa0350010:three_prime_UTR | 15.0% |
| !!! | ATTAAAATAATGGAATAACC+TGG | - | chr3_1:14489359-14489378 | None:intergenic | 20.0% |
| !!! | TGTTTTCATAAACTATCTTT+CGG | + | chr3_1:14489484-14489503 | Msa0350010:intron | 20.0% |
| !!! | AGCTACAAATTTAATTTGTT+AGG | + | chr3_1:14489640-14489659 | Msa0350010:intron | 20.0% |
| !!! | AAGTTTAATTTCTGATTACA+TGG | + | chr3_1:14490360-14490379 | Msa0350010:intron | 20.0% |
| !!! | GATGTGAAATTATTTAGTTT+TGG | + | chr3_1:14490744-14490763 | Msa0350010:intron | 20.0% |
| !!! | GTTATTTCTTTCAGTTTTTT+TGG | + | chr3_1:14491051-14491070 | Msa0350010:intron | 20.0% |
| !! | AAACATGTAAGTTTGAATAA+TGG | - | chr3_1:14491491-14491510 | None:intergenic | 20.0% |
| !! | ATATGATGTTATTATAGGTT+TGG | + | chr3_1:14491681-14491700 | Msa0350010:intron | 20.0% |
| !! | AAAAAAACTATGATTATGCA+GGG | - | chr3_1:14492425-14492444 | None:intergenic | 20.0% |
| !! | AAAAAAAACTATGATTATGC+AGG | - | chr3_1:14492426-14492445 | None:intergenic | 20.0% |
| !! | CATAATCATAGATTTAACAA+TGG | + | chr3_1:14492617-14492636 | Msa0350010:intron | 20.0% |
| !!! | TGTTTGAAATTGTAATTACA+GGG | - | chr3_1:14492913-14492932 | None:intergenic | 20.0% |
| !!! | TTGTTTGAAATTGTAATTAC+AGG | - | chr3_1:14492914-14492933 | None:intergenic | 20.0% |
| !! | TTACAATTTCAAACAATGTT+CGG | + | chr3_1:14492918-14492937 | Msa0350010:intron | 20.0% |
| !! | AATAATAGACTATATCATAG+TGG | - | chr3_1:14493195-14493214 | None:intergenic | 20.0% |
| !! | ATCTCACTATTAAATAGTTA+AGG | - | chr3_1:14493336-14493355 | None:intergenic | 20.0% |
| !! | ATCAATAAAAATAACTCATG+AGG | + | chr3_1:14493744-14493763 | Msa0350010:CDS | 20.0% |
| !! | TCAATAAAAATAACTCATGA+GGG | + | chr3_1:14493745-14493764 | Msa0350010:CDS | 20.0% |
| !! | AGAAAGAATATATTAGCAAT+TGG | - | chr3_1:14493862-14493881 | None:intergenic | 20.0% |
| !! | ATAAGTATATATTACATGAG+AGG | + | chr3_1:14493986-14494005 | Msa0350010:CDS | 20.0% |
| !!! | TTTTTGTTATGAATTTTTGG+TGG | + | chr3_1:14494868-14494887 | Msa0350010:three_prime_UTR | 20.0% |
| ! | TAATCACTTGTGATATTGTT+TGG | - | chr3_1:14489569-14489588 | None:intergenic | 25.0% |
| !!! | AATTGATTTTGTCTCTAGAA+TGG | - | chr3_1:14489951-14489970 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTACTAGGGA+CGG | - | chr3_1:14490267-14490286 | None:intergenic | 25.0% |
| ! | AATTATATTCAACAACATCC+CGG | - | chr3_1:14490386-14490405 | None:intergenic | 25.0% |
| ! | TGAATATAATTACTTGTGTG+TGG | + | chr3_1:14490395-14490414 | Msa0350010:intron | 25.0% |
| !! | ATAGTATGAACTTTTGAATG+CGG | - | chr3_1:14490421-14490440 | None:intergenic | 25.0% |
| !! | TACTGAATTTGAAACAATTG+AGG | + | chr3_1:14490558-14490577 | Msa0350010:CDS | 25.0% |
| !! | ACTGAATTTGAAACAATTGA+GGG | + | chr3_1:14490559-14490578 | Msa0350010:CDS | 25.0% |
| !! | AAAAGATGAATCTTCTGTTT+TGG | - | chr3_1:14491015-14491034 | None:intergenic | 25.0% |
| !! | AGTTTTCCTAATTATATGTG+TGG | + | chr3_1:14491074-14491093 | Msa0350010:intron | 25.0% |
| ! | ATATTAAACGAAGATAACTG+AGG | + | chr3_1:14491110-14491129 | Msa0350010:intron | 25.0% |
| ! | ACATTTATTCAGTCATTAAG+GGG | - | chr3_1:14491226-14491245 | None:intergenic | 25.0% |
| ! | CACATTTATTCAGTCATTAA+GGG | - | chr3_1:14491227-14491246 | None:intergenic | 25.0% |
| ! | ACACATTTATTCAGTCATTA+AGG | - | chr3_1:14491228-14491247 | None:intergenic | 25.0% |
| !! | GTTCTAGATTTCATGAAAAT+TGG | + | chr3_1:14491413-14491432 | Msa0350010:intron | 25.0% |
| ! | TGAATAATGGTCAATTGTAT+TGG | - | chr3_1:14491478-14491497 | None:intergenic | 25.0% |
| ! | TATTCAAACTTACATGTTTG+TGG | + | chr3_1:14491492-14491511 | Msa0350010:intron | 25.0% |
| !! | TATAATACAACTCTGAGAAA+TGG | + | chr3_1:14491553-14491572 | Msa0350010:intron | 25.0% |
| ! | GAAAGCAATAACAAAATGAA+GGG | - | chr3_1:14491627-14491646 | None:intergenic | 25.0% |
| ! | AGAAAGCAATAACAAAATGA+AGG | - | chr3_1:14491628-14491647 | None:intergenic | 25.0% |
| !!! | TGATGAAAAGAGGAATTTTT+TGG | + | chr3_1:14491773-14491792 | Msa0350010:CDS | 25.0% |
| ! | TGATTGAAATCAGAAAAATG+AGG | - | chr3_1:14492657-14492676 | None:intergenic | 25.0% |
| !! | TTTGAAATTGTAATTACAGG+GGG | - | chr3_1:14492911-14492930 | None:intergenic | 25.0% |
| !! | GTTTGAAATTGTAATTACAG+GGG | - | chr3_1:14492912-14492931 | None:intergenic | 25.0% |
| ! | TTACAGATCTTTGTTGAAAT+AGG | + | chr3_1:14493059-14493078 | Msa0350010:intron | 25.0% |
| ! | TACAGATCTTTGTTGAAATA+GGG | + | chr3_1:14493060-14493079 | Msa0350010:intron | 25.0% |
| !!! | ATTTTTTACCAGAAAAACTG+AGG | - | chr3_1:14493116-14493135 | None:intergenic | 25.0% |
| !!! | TGAAGCATTTTACCAAAATT+TGG | + | chr3_1:14493155-14493174 | Msa0350010:intron | 25.0% |
| !! | AACTATAACCAACCAAATTT+TGG | - | chr3_1:14493170-14493189 | None:intergenic | 25.0% |
| ! | ACAGAAAAAAATACGACAAA+AGG | - | chr3_1:14493222-14493241 | None:intergenic | 25.0% |
| ! | AGGTTTCATCATAGTTAAAT+TGG | + | chr3_1:14493491-14493510 | Msa0350010:intron | 25.0% |
| ! | AAATTGGAAGTTGTTTAATG+TGG | + | chr3_1:14493507-14493526 | Msa0350010:intron | 25.0% |
| ! | GAAGTACAAGTGATATTATT+TGG | + | chr3_1:14493565-14493584 | Msa0350010:intron | 25.0% |
| ! | TAAGGGAAAAAATATCAATC+AGG | - | chr3_1:14493660-14493679 | None:intergenic | 25.0% |
| ! | TTAAAGAAAATGCTAACAAG+TGG | + | chr3_1:14494182-14494201 | Msa0350010:intron | 25.0% |
| ! | ACTTACTAATGTAAATCCAA+AGG | + | chr3_1:14494788-14494807 | Msa0350010:CDS | 25.0% |
| ATGAAAACAGTTCACATAAG+CGG | - | chr3_1:14489442-14489461 | None:intergenic | 30.0% | |
| GAATGTCTCACAATAAAATG+TGG | - | chr3_1:14489692-14489711 | None:intergenic | 30.0% | |
| TAAGTGTATGTTTGGTTATG+CGG | + | chr3_1:14489762-14489781 | Msa0350010:intron | 30.0% | |
| !! | TCTAGCTAAAATTGAGTTGA+AGG | + | chr3_1:14489815-14489834 | Msa0350010:intron | 30.0% |
| !! | CTAAAATTGAGTTGAAGGTA+AGG | + | chr3_1:14489820-14489839 | Msa0350010:intron | 30.0% |
| AGGTAAGGTAAAGTTATGTT+TGG | + | chr3_1:14489835-14489854 | Msa0350010:intron | 30.0% | |
| !! | AGAATTGATTTTGCCATGTT+TGG | - | chr3_1:14490128-14490147 | None:intergenic | 30.0% |
| !!! | TAGACCTCTAGAATCATTTT+TGG | + | chr3_1:14490147-14490166 | Msa0350010:intron | 30.0% |
| ! | TTTACGTTTGTTTCCACTTT+TGG | - | chr3_1:14490178-14490197 | None:intergenic | 30.0% |
| AACAAACGTAAACATTGGAA+AGG | + | chr3_1:14490186-14490205 | Msa0350010:intron | 30.0% | |
| ATGTCAAATGGAGAAAACAT+AGG | + | chr3_1:14490289-14490308 | Msa0350010:intron | 30.0% | |
| TTAATTTCTGATTACATGGC+CGG | + | chr3_1:14490364-14490383 | Msa0350010:intron | 30.0% | |
| GCATTCAAAAGTTCATACTA+TGG | + | chr3_1:14490420-14490439 | Msa0350010:intron | 30.0% | |
| TCTTGTATACCAATCTTTCA+AGG | - | chr3_1:14490630-14490649 | None:intergenic | 30.0% | |
| ACAAAGGGAGTAAGAAAAAA+AGG | - | chr3_1:14490792-14490811 | None:intergenic | 30.0% | |
| ACTCGCAAAATAAGAACAAA+GGG | - | chr3_1:14490807-14490826 | None:intergenic | 30.0% | |
| TACTCGCAAAATAAGAACAA+AGG | - | chr3_1:14490808-14490827 | None:intergenic | 30.0% | |
| !! | AGAAGATTCATCTTTTAGAG+AGG | + | chr3_1:14491019-14491038 | Msa0350010:CDS | 30.0% |
| TTTCCTAATTATATGTGTGG+AGG | + | chr3_1:14491077-14491096 | Msa0350010:intron | 30.0% | |
| AAACCTCCACACATATAATT+AGG | - | chr3_1:14491083-14491102 | None:intergenic | 30.0% | |
| AATGACTGAATAAATGTGTG+TGG | + | chr3_1:14491229-14491248 | Msa0350010:intron | 30.0% | |
| TTGTGGTTAAAGAACAAAGT+AGG | + | chr3_1:14491509-14491528 | Msa0350010:intron | 30.0% | |
| AAGAACAAAGTAGGTGAATA+TGG | + | chr3_1:14491518-14491537 | Msa0350010:intron | 30.0% | |
| GAAAATGCAATGATGAAAAG+AGG | + | chr3_1:14491763-14491782 | Msa0350010:CDS | 30.0% | |
| !!! | AATTTTTTGGACCGTCTTTT+AGG | + | chr3_1:14491786-14491805 | Msa0350010:CDS | 30.0% |
| ACACATTAACTAATGCTGAT+AGG | + | chr3_1:14491977-14491996 | Msa0350010:intron | 30.0% | |
| CACATTAACTAATGCTGATA+GGG | + | chr3_1:14491978-14491997 | Msa0350010:intron | 30.0% | |
| AGTCTCTATTAGATGGTAAT+TGG | + | chr3_1:14492390-14492409 | Msa0350010:intron | 30.0% | |
| GTCTCTATTAGATGGTAATT+GGG | + | chr3_1:14492391-14492410 | Msa0350010:intron | 30.0% | |
| GATTATGTAACCAAGTGATT+GGG | - | chr3_1:14492604-14492623 | None:intergenic | 30.0% | |
| TGATTATGTAACCAAGTGAT+TGG | - | chr3_1:14492605-14492624 | None:intergenic | 30.0% | |
| ! | ATTTTGCTCATTAATTGCTC+AGG | + | chr3_1:14492765-14492784 | Msa0350010:intron | 30.0% |
| ! | TTTTGCTCATTAATTGCTCA+GGG | + | chr3_1:14492766-14492785 | Msa0350010:intron | 30.0% |
| !! | GCTCATAGAAAATTTTAGCA+CGG | - | chr3_1:14492986-14493005 | None:intergenic | 30.0% |
| ! | GCATTTTACCAAAATTTGGT+TGG | + | chr3_1:14493159-14493178 | Msa0350010:intron | 30.0% |
| TTGTTTAGAAATTGTTACCG+CGG | + | chr3_1:14493247-14493266 | Msa0350010:intron | 30.0% | |
| !!! | TTTGCTCGATCCTTTTTTAT+GGG | + | chr3_1:14493366-14493385 | Msa0350010:CDS | 30.0% |
| GTCAAGTAATATCTGCATAA+GGG | - | chr3_1:14493677-14493696 | None:intergenic | 30.0% | |
| TGTCAAGTAATATCTGCATA+AGG | - | chr3_1:14493678-14493697 | None:intergenic | 30.0% | |
| !! | CATTGTTGATTTGTTCAACA+TGG | + | chr3_1:14493696-14493715 | Msa0350010:CDS | 30.0% |
| ! | TGATTGCTTCTTTTTAGACA+GGG | - | chr3_1:14493728-14493747 | None:intergenic | 30.0% |
| ! | TTGATTGCTTCTTTTTAGAC+AGG | - | chr3_1:14493729-14493748 | None:intergenic | 30.0% |
| GTATACAACAGAGAATTTAG+TGG | - | chr3_1:14493795-14493814 | None:intergenic | 30.0% | |
| ATGTATACTACTACTGAATC+AGG | + | chr3_1:14493894-14493913 | Msa0350010:intron | 30.0% | |
| AAAAAGGAGAATGAAAGTCA+AGG | + | chr3_1:14494015-14494034 | Msa0350010:CDS | 30.0% | |
| TGATAAATGTCTCGTTAACA+TGG | + | chr3_1:14494291-14494310 | Msa0350010:intron | 30.0% | |
| !! | ATAAAATCATCGATTTGCGA+CGG | - | chr3_1:14494471-14494490 | None:intergenic | 30.0% |
| GAAATACTATGTACACTTTG+TGG | - | chr3_1:14494672-14494691 | None:intergenic | 30.0% | |
| TATGTTAACTAGCAATGCTA+AGG | + | chr3_1:14494692-14494711 | Msa0350010:CDS | 30.0% | |
| ATCAAACAAAAGATGACAGA+GGG | + | chr3_1:14494748-14494767 | Msa0350010:CDS | 30.0% | |
| ACTTAGAAAAGACTATCCTT+TGG | - | chr3_1:14494807-14494826 | None:intergenic | 30.0% | |
| !!! | TGGACAGATTTTGGTTTCTT+CGG | - | chr3_1:14489298-14489317 | None:intergenic | 35.0% |
| ! | AATAATGGAATAACCTGGAC+TGG | - | chr3_1:14489354-14489373 | None:intergenic | 35.0% |
| AGTTCACATAAGCGGTTATA+TGG | - | chr3_1:14489434-14489453 | None:intergenic | 35.0% | |
| GTCTCACAATAAAATGTGGT+TGG | - | chr3_1:14489688-14489707 | None:intergenic | 35.0% | |
| TCTCAAAGAATCGATGATTG+CGG | + | chr3_1:14489710-14489729 | Msa0350010:intron | 35.0% | |
| AGCATGACTAAGTGTATGTT+TGG | + | chr3_1:14489754-14489773 | Msa0350010:intron | 35.0% | |
| GAATCAGAAGCTACAATTTC+TGG | + | chr3_1:14489912-14489931 | Msa0350010:intron | 35.0% | |
| GATTCTCTTCTGTGCTAATT+TGG | + | chr3_1:14490057-14490076 | Msa0350010:intron | 35.0% | |
| TCTTCTGTGCTAATTTGGAT+GGG | + | chr3_1:14490062-14490081 | Msa0350010:intron | 35.0% | |
| ! | TACTTTAGAGGAACCAAACA+TGG | + | chr3_1:14490112-14490131 | Msa0350010:intron | 35.0% |
| GTGGAAACAAACGTAAACAT+TGG | + | chr3_1:14490181-14490200 | Msa0350010:intron | 35.0% | |
| ACTTCAGCACTGTAAACATA+GGG | - | chr3_1:14490335-14490354 | None:intergenic | 35.0% | |
| AACTTCAGCACTGTAAACAT+AGG | - | chr3_1:14490336-14490355 | None:intergenic | 35.0% | |
| TAATTTCTGATTACATGGCC+GGG | + | chr3_1:14490365-14490384 | Msa0350010:intron | 35.0% | |
| TATAGATTGCAAGGATTCGA+TGG | + | chr3_1:14490534-14490553 | Msa0350010:exon | 35.0% | |
| ATAGATTGCAAGGATTCGAT+GGG | + | chr3_1:14490535-14490554 | Msa0350010:exon | 35.0% | |
| CTTCATAAGATGCTGGAAAT+AGG | - | chr3_1:14490677-14490696 | None:intergenic | 35.0% | |
| CTATTTCCAGCATCTTATGA+AGG | + | chr3_1:14490675-14490694 | Msa0350010:CDS | 35.0% | |
| TACATACCTTCATAAGATGC+TGG | - | chr3_1:14490684-14490703 | None:intergenic | 35.0% | |
| TGCGTCTATATAAGTCATTC+TGG | + | chr3_1:14490879-14490898 | Msa0350010:intron | 35.0% | |
| GCGTCTATATAAGTCATTCT+GGG | + | chr3_1:14490880-14490899 | Msa0350010:intron | 35.0% | |
| TGTGTGGTCTGGTAATTATT+AGG | + | chr3_1:14490906-14490925 | Msa0350010:intron | 35.0% | |
| TGGTAATTATTAGGTGAGGA+GGG | + | chr3_1:14490915-14490934 | Msa0350010:intron | 35.0% | |
| !! | GATTCATCTTTTAGAGAGGT+AGG | + | chr3_1:14491023-14491042 | Msa0350010:intron | 35.0% |
| TTAAACGAAGATAACTGAGG+AGG | + | chr3_1:14491113-14491132 | Msa0350010:intron | 35.0% | |
| ACATATGATTGAAACAGGCA+GGG | - | chr3_1:14491349-14491368 | None:intergenic | 35.0% | |
| CTTGCACATATGATTGAAAC+AGG | - | chr3_1:14491354-14491373 | None:intergenic | 35.0% | |
| CTGTTTCAATCATATGTGCA+AGG | + | chr3_1:14491352-14491371 | Msa0350010:intron | 35.0% | |
| TGTTTCATGACAGCTTGAAA+AGG | + | chr3_1:14491739-14491758 | Msa0350010:intron | 35.0% | |
| AATTCTTCACTTGACCTTTC+TGG | + | chr3_1:14492205-14492224 | Msa0350010:intron | 35.0% | |
| !! | CCTTGATAGCTAGCTTTAAA+GGG | - | chr3_1:14492287-14492306 | None:intergenic | 35.0% |
| !! | CCTTTAAAGCTAGCTATCAA+GGG | + | chr3_1:14492285-14492304 | Msa0350010:intron | 35.0% |
| !! | CTTTAAAGCTAGCTATCAAG+GGG | + | chr3_1:14492286-14492305 | Msa0350010:intron | 35.0% |
| ! | TTTAAAGCTAGCTATCAAGG+GGG | + | chr3_1:14492287-14492306 | Msa0350010:intron | 35.0% |
| TTACCATCTAATAGAGACTC+CGG | - | chr3_1:14492389-14492408 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGGTGTTAACCCTC+CGG | + | chr3_1:14492442-14492461 | Msa0350010:intron | 35.0% |
| ! | TTCATGATGGGAACAATTCT+TGG | - | chr3_1:14492528-14492547 | None:intergenic | 35.0% |
| ATCCTTCTACTAGTATCATG+TGG | + | chr3_1:14492729-14492748 | Msa0350010:intron | 35.0% | |
| AACCACATGATACTAGTAGA+AGG | - | chr3_1:14492734-14492753 | None:intergenic | 35.0% | |
| ATTATACCGCGATCAAGATA+TGG | - | chr3_1:14492805-14492824 | None:intergenic | 35.0% | |
| ACTTATAACAGAGATGCAGA+AGG | - | chr3_1:14493040-14493059 | None:intergenic | 35.0% | |
| !! | CTTGATAACCTCAGTTTTTC+TGG | + | chr3_1:14493105-14493124 | Msa0350010:intron | 35.0% |
| !!! | GTTTGCTCGATCCTTTTTTA+TGG | + | chr3_1:14493365-14493384 | Msa0350010:CDS | 35.0% |
| CACAGAAAGTCCCATAAAAA+AGG | - | chr3_1:14493379-14493398 | None:intergenic | 35.0% | |
| AATAACTCATGAGGGAATAG+AGG | + | chr3_1:14493753-14493772 | Msa0350010:CDS | 35.0% | |
| ATGTTACATTAGAGTGTGTC+TGG | + | chr3_1:14493956-14493975 | Msa0350010:CDS | 35.0% | |
| ! | ACATGAGAGGAAGCATAAAA+AGG | + | chr3_1:14493999-14494018 | Msa0350010:CDS | 35.0% |
| AATCTTTCTGTTCAAGCATC+AGG | + | chr3_1:14494054-14494073 | Msa0350010:CDS | 35.0% | |
| ACACTATCGAGTCTATTCTT+GGG | + | chr3_1:14494088-14494107 | Msa0350010:CDS | 35.0% | |
| TAACAGAAATGAGCACAACA+AGG | - | chr3_1:14494122-14494141 | None:intergenic | 35.0% | |
| GGCTTGTATTCAATTGACTA+AGG | + | chr3_1:14494312-14494331 | Msa0350010:intron | 35.0% | |
| ! | AAGGCATGTCTTGTTAAACA+TGG | + | chr3_1:14494331-14494350 | Msa0350010:intron | 35.0% |
| TTTGTATCCTTGACATGAGA+GGG | - | chr3_1:14494429-14494448 | None:intergenic | 35.0% | |
| ATTTGTATCCTTGACATGAG+AGG | - | chr3_1:14494430-14494449 | None:intergenic | 35.0% | |
| !! | TAAAATCATCGATTTGCGAC+GGG | - | chr3_1:14494470-14494489 | None:intergenic | 35.0% |
| ! | GTCGCAAATCGATGATTTTA+TGG | + | chr3_1:14494470-14494489 | Msa0350010:CDS | 35.0% |
| ! | GATTTTATGGAGACTGTGTT+TGG | + | chr3_1:14494483-14494502 | Msa0350010:CDS | 35.0% |
| GCTAAGTCATTCCATTTCAT+GGG | + | chr3_1:14494714-14494733 | Msa0350010:CDS | 35.0% | |
| CACTTTCATTTCCCATGAAA+TGG | - | chr3_1:14494728-14494747 | None:intergenic | 35.0% | |
| GATCAAACAAAAGATGACAG+AGG | + | chr3_1:14494747-14494766 | Msa0350010:CDS | 35.0% | |
| ! | TTTGGTGGTACTGTTATAGT+AGG | + | chr3_1:14494883-14494902 | Msa0350010:three_prime_UTR | 35.0% |
| !!! | GATTTTGGTTTCTTCGGCAA+AGG | - | chr3_1:14489292-14489311 | None:intergenic | 40.0% |
| ! | TGCGTTTTCTGGACAGATTT+TGG | - | chr3_1:14489307-14489326 | None:intergenic | 40.0% |
| ACTTTAGATGAGAACCCACT+TGG | + | chr3_1:14489973-14489992 | Msa0350010:intron | 40.0% | |
| CTTTAGATGAGAACCCACTT+GGG | + | chr3_1:14489974-14489993 | Msa0350010:intron | 40.0% | |
| !! | TTAGTCTGGTGGTATTGACT+TGG | + | chr3_1:14489997-14490016 | Msa0350010:intron | 40.0% |
| !! | TAGTCTGGTGGTATTGACTT+GGG | + | chr3_1:14489998-14490017 | Msa0350010:intron | 40.0% |
| CTCTTCTGTGCTAATTTGGA+TGG | + | chr3_1:14490061-14490080 | Msa0350010:intron | 40.0% | |
| GGAGCCAAAAATGATTCTAG+AGG | - | chr3_1:14490154-14490173 | None:intergenic | 40.0% | |
| !!! | ATTTTTGGCTCCTCCAAAAG+TGG | + | chr3_1:14490162-14490181 | Msa0350010:intron | 40.0% |
| !! | ACGTTTGTTTCCACTTTTGG+AGG | - | chr3_1:14490175-14490194 | None:intergenic | 40.0% |
| ! | GCAGATAATAGTTCTGCTGT+TGG | + | chr3_1:14490510-14490529 | Msa0350010:intron | 40.0% |
| GCTGTTGGATATAGATTGCA+AGG | + | chr3_1:14490525-14490544 | Msa0350010:five_prime_UTR | 40.0% | |
| GTGTGGTATCCTTGAAAGAT+TGG | + | chr3_1:14490618-14490637 | Msa0350010:CDS | 40.0% | |
| !! | AAGTCATTCTGGGTTTTGTG+TGG | + | chr3_1:14490890-14490909 | Msa0350010:intron | 40.0% |
| GGTCTGGTAATTATTAGGTG+AGG | + | chr3_1:14490911-14490930 | Msa0350010:intron | 40.0% | |
| CTGGTAATTATTAGGTGAGG+AGG | + | chr3_1:14490914-14490933 | Msa0350010:intron | 40.0% | |
| ATTAGGTGAGGAGGGATTTA+AGG | + | chr3_1:14490923-14490942 | Msa0350010:intron | 40.0% | |
| ACTGAATAAATGTGTGTGGC+TGG | + | chr3_1:14491233-14491252 | Msa0350010:intron | 40.0% | |
| CACATATGATTGAAACAGGC+AGG | - | chr3_1:14491350-14491369 | None:intergenic | 40.0% | |
| ATCATATGTGCAAGGCAAAG+AGG | + | chr3_1:14491360-14491379 | Msa0350010:intron | 40.0% | |
| CAAGGCAAAGAGGAAAAAGT+TGG | + | chr3_1:14491370-14491389 | Msa0350010:intron | 40.0% | |
| ! | TCATTGTGTTTCTACTGTGC+TGG | + | chr3_1:14491903-14491922 | Msa0350010:intron | 40.0% |
| ATGCATAGAGCATGACTATG+AGG | + | chr3_1:14491949-14491968 | Msa0350010:intron | 40.0% | |
| AACTAATGCTGATAGGGACT+TGG | + | chr3_1:14491984-14492003 | Msa0350010:intron | 40.0% | |
| ACTAATGCTGATAGGGACTT+GGG | + | chr3_1:14491985-14492004 | Msa0350010:intron | 40.0% | |
| TGATAGGGACTTGGGTATTA+TGG | + | chr3_1:14491993-14492012 | Msa0350010:intron | 40.0% | |
| GATAGGGACTTGGGTATTAT+GGG | + | chr3_1:14491994-14492013 | Msa0350010:intron | 40.0% | |
| ATAGGGACTTGGGTATTATG+GGG | + | chr3_1:14491995-14492014 | Msa0350010:intron | 40.0% | |
| ATAGGGACTTGGGTATTATG+GGG | - | chr3_1:14491995-14492014 | None:intergenic | 40.0% | |
| GATAGGGACTTGGGTATTAT+GGG | - | chr3_1:14491994-14492013 | None:intergenic | 40.0% | |
| TGATAGGGACTTGGGTATTA+TGG | - | chr3_1:14491993-14492012 | None:intergenic | 40.0% | |
| AATTGTAGAGTACAGCCGTT+GGG | - | chr3_1:14492189-14492208 | None:intergenic | 40.0% | |
| GCTTGGATACCTATCAGAAA+GGG | - | chr3_1:14492250-14492269 | None:intergenic | 40.0% | |
| TGCTTGGATACCTATCAGAA+AGG | - | chr3_1:14492251-14492270 | None:intergenic | 40.0% | |
| !! | GATAGCTAGCTTTAAAGGGA+GGG | - | chr3_1:14492283-14492302 | None:intergenic | 40.0% |
| !! | TGATAGCTAGCTTTAAAGGG+AGG | - | chr3_1:14492284-14492303 | None:intergenic | 40.0% |
| !! | CCCTTTAAAGCTAGCTATCA+AGG | + | chr3_1:14492284-14492303 | Msa0350010:intron | 40.0% |
| !! | CCCTTGATAGCTAGCTTTAA+AGG | - | chr3_1:14492288-14492307 | None:intergenic | 40.0% |
| ATCATGTAGTATGGGATGCT+CGG | - | chr3_1:14492339-14492358 | None:intergenic | 40.0% | |
| CATCCCATACTACATGATGT+GGG | + | chr3_1:14492341-14492360 | Msa0350010:intron | 40.0% | |
| AGTCCCACATCATGTAGTAT+GGG | - | chr3_1:14492347-14492366 | None:intergenic | 40.0% | |
| AAGTCCCACATCATGTAGTA+TGG | - | chr3_1:14492348-14492367 | None:intergenic | 40.0% | |
| ATACTACATGATGTGGGACT+TGG | + | chr3_1:14492347-14492366 | Msa0350010:intron | 40.0% | |
| ATAGAGACTCCGGTATTATG+TGG | - | chr3_1:14492379-14492398 | None:intergenic | 40.0% | |
| ATACCGGAGTCTCTATTAGA+TGG | + | chr3_1:14492383-14492402 | Msa0350010:intron | 40.0% | |
| TTCCCATCATGAATCGAACT+CGG | + | chr3_1:14492535-14492554 | Msa0350010:intron | 40.0% | |
| ACCACTTAAACCCAATCACT+TGG | + | chr3_1:14492591-14492610 | Msa0350010:intron | 40.0% | |
| ACCAAGTGATTGGGTTTAAG+TGG | - | chr3_1:14492595-14492614 | None:intergenic | 40.0% | |
| ! | ATTGGTTCAACCATCTGCAT+GGG | - | chr3_1:14492692-14492711 | None:intergenic | 40.0% |
| TTGCTCAGGGTTTAGTTGAT+TGG | + | chr3_1:14492779-14492798 | Msa0350010:intron | 40.0% | |
| AAGCATGCGCTAAATGATAC+TGG | - | chr3_1:14493279-14493298 | None:intergenic | 40.0% | |
| GGGACTTTCTGTGACAATTA+TGG | + | chr3_1:14493386-14493405 | Msa0350010:CDS | 40.0% | |
| !! | AGGGAATAGAGGTTAGTTTG+TGG | + | chr3_1:14493764-14493783 | Msa0350010:intron | 40.0% |
| !! | GGGAATAGAGGTTAGTTTGT+GGG | + | chr3_1:14493765-14493784 | Msa0350010:intron | 40.0% |
| AATCATCGTCATCACTAGCA+GGG | - | chr3_1:14493936-14493955 | None:intergenic | 40.0% | |
| TAATCATCGTCATCACTAGC+AGG | - | chr3_1:14493937-14493956 | None:intergenic | 40.0% | |
| GACACTATCGAGTCTATTCT+TGG | + | chr3_1:14494087-14494106 | Msa0350010:CDS | 40.0% | |
| CACTATCGAGTCTATTCTTG+GGG | + | chr3_1:14494089-14494108 | Msa0350010:CDS | 40.0% | |
| ACTATCGAGTCTATTCTTGG+GGG | + | chr3_1:14494090-14494109 | Msa0350010:CDS | 40.0% | |
| AAATGCTAACAAGTGGCCTT+AGG | + | chr3_1:14494189-14494208 | Msa0350010:intron | 40.0% | |
| ! | AATGCTAACAAGTGGCCTTA+GGG | + | chr3_1:14494190-14494209 | Msa0350010:intron | 40.0% |
| GCATTATCACAGTCTTCAAC+CGG | + | chr3_1:14494582-14494601 | Msa0350010:CDS | 40.0% | |
| ACTTCATTCCAGTTCGAAGA+AGG | + | chr3_1:14494611-14494630 | Msa0350010:CDS | 40.0% | |
| ACACTTTGTGGCACTAATGT+AGG | - | chr3_1:14494660-14494679 | None:intergenic | 40.0% | |
| GGCTAAGTCATTCCATTTCA+TGG | + | chr3_1:14494713-14494732 | Msa0350010:CDS | 40.0% | |
| ! | ATGGAATAACCTGGACTGGA+TGG | - | chr3_1:14489350-14489369 | None:intergenic | 45.0% |
| GAATCAAACCTGAGACCTTG+AGG | - | chr3_1:14490042-14490061 | None:intergenic | 45.0% | |
| !! | CATTGGAAAGGTACCTGATG+AGG | + | chr3_1:14490198-14490217 | Msa0350010:intron | 45.0% |
| CAAGGATACCACACTCACAT+TGG | - | chr3_1:14490612-14490631 | None:intergenic | 45.0% | |
| GATGCTGGAAATAGGAACAG+CGG | - | chr3_1:14490669-14490688 | None:intergenic | 45.0% | |
| TGCGAGTAATTGAACTCGTG+TGG | + | chr3_1:14490820-14490839 | Msa0350010:intron | 45.0% | |
| !! | ATTCTGGGTTTTGTGTGGTC+TGG | + | chr3_1:14490895-14490914 | Msa0350010:intron | 45.0% |
| ! | GGATTTAAGGCTTCTGCAGT+TGG | + | chr3_1:14490936-14490955 | Msa0350010:CDS | 45.0% |
| CAAACTTGGAGGAGCTTGTA+AGG | + | chr3_1:14490959-14490978 | Msa0350010:CDS | 45.0% | |
| AATAAATGTGTGTGGCTGGC+TGG | + | chr3_1:14491237-14491256 | Msa0350010:intron | 45.0% | |
| ! | ATAAATGTGTGTGGCTGGCT+GGG | + | chr3_1:14491238-14491257 | Msa0350010:intron | 45.0% |
| GTCATTATCCTAGCCACCTA+AGG | - | chr3_1:14491276-14491295 | None:intergenic | 45.0% | |
| AGGTGGCTAGGATAATGACA+TGG | + | chr3_1:14491277-14491296 | Msa0350010:intron | 45.0% | |
| GTCGTGCAGATCCTAAAAGA+CGG | - | chr3_1:14491800-14491819 | None:intergenic | 45.0% | |
| ATCTGCACGACTACTAGAAG+AGG | + | chr3_1:14491809-14491828 | Msa0350010:CDS | 45.0% | |
| AGTCCCACATCGAGTATTAC+AGG | + | chr3_1:14492024-14492043 | Msa0350010:intron | 45.0% | |
| GTCCCACATCGAGTATTACA+GGG | + | chr3_1:14492025-14492044 | Msa0350010:intron | 45.0% | |
| CACCCTGTAATACTCGATGT+GGG | - | chr3_1:14492030-14492049 | None:intergenic | 45.0% | |
| !! | TGCTCGATGGAGTTTTGATG+TGG | - | chr3_1:14492086-14492105 | None:intergenic | 45.0% |
| AAGTAGAATGGGATGCTCGA+TGG | - | chr3_1:14492099-14492118 | None:intergenic | 45.0% | |
| GCATCCCATTCTACTTGATG+CGG | + | chr3_1:14492103-14492122 | Msa0350010:intron | 45.0% | |
| CATCCCATTCTACTTGATGC+GGG | + | chr3_1:14492104-14492123 | Msa0350010:intron | 45.0% | |
| AGTCCCGCATCAAGTAGAAT+GGG | - | chr3_1:14492110-14492129 | None:intergenic | 45.0% | |
| AAGTCCCGCATCAAGTAGAA+TGG | - | chr3_1:14492111-14492130 | None:intergenic | 45.0% | |
| AATACCCAAGTCCCTATCAC+AGG | + | chr3_1:14492142-14492161 | Msa0350010:intron | 45.0% | |
| GAATTGTAGAGTACAGCCGT+TGG | - | chr3_1:14492190-14492209 | None:intergenic | 45.0% | |
| AACAGAGGAGATGACCAGAA+AGG | - | chr3_1:14492222-14492241 | None:intergenic | 45.0% | |
| ! | TTTCTGGTCATCTCCTCTGT+TGG | + | chr3_1:14492221-14492240 | Msa0350010:intron | 45.0% |
| !! | TGTTGGTAGCCCTTTCTGAT+AGG | + | chr3_1:14492238-14492257 | Msa0350010:intron | 45.0% |
| ! | TGCTCGGTGGAGTATTTAAG+TGG | - | chr3_1:14492323-14492342 | None:intergenic | 45.0% |
| GCATCCCATACTACATGATG+TGG | + | chr3_1:14492340-14492359 | Msa0350010:intron | 45.0% | |
| TGGACACCACCACATAATAC+CGG | + | chr3_1:14492367-14492386 | Msa0350010:intron | 45.0% | |
| AGCAGAACTCCGGATTACTA+GGG | - | chr3_1:14492485-14492504 | None:intergenic | 45.0% | |
| TAGTAATCCGGAGTTCTGCT+GGG | + | chr3_1:14492485-14492504 | Msa0350010:intron | 45.0% | |
| TCCCATCATGAATCGAACTC+GGG | + | chr3_1:14492536-14492555 | Msa0350010:intron | 45.0% | |
| ACCCGAGTTCGATTCATGAT+GGG | - | chr3_1:14492540-14492559 | None:intergenic | 45.0% | |
| AACCCGAGTTCGATTCATGA+TGG | - | chr3_1:14492541-14492560 | None:intergenic | 45.0% | |
| AACTCCTCCTTTGACGAATC+GGG | - | chr3_1:14492566-14492585 | None:intergenic | 45.0% | |
| GAACTCCTCCTTTGACGAAT+CGG | - | chr3_1:14492567-14492586 | None:intergenic | 45.0% | |
| ! | GTTCTGTTTTCCCATGCAGA+TGG | + | chr3_1:14492679-14492698 | Msa0350010:intron | 45.0% |
| !! | CATTGGTTCAACCATCTGCA+TGG | - | chr3_1:14492693-14492712 | None:intergenic | 45.0% |
| GATGGTTGAACCAATGCTGA+AGG | + | chr3_1:14492697-14492716 | Msa0350010:intron | 45.0% | |
| ! | GATTGGCCATATCTTGATCG+CGG | + | chr3_1:14492796-14492815 | Msa0350010:intron | 45.0% |
| GCTTCAGAATCTCACAACTG+AGG | - | chr3_1:14493141-14493160 | None:intergenic | 45.0% | |
| ACTTCTTATCCAACGCCCTA+AGG | - | chr3_1:14494208-14494227 | None:intergenic | 45.0% | |
| TGCAGATGACCAACATGACT+CGG | + | chr3_1:14494368-14494387 | Msa0350010:intron | 45.0% | |
| !! | ACTGTGTTTGGTAGTGAGGA+AGG | + | chr3_1:14494495-14494514 | Msa0350010:CDS | 45.0% |
| TGGTGAAGATTCATGGAGAG+AGG | - | chr3_1:14494547-14494566 | None:intergenic | 45.0% | |
| TCTCCATGAATCTTCACCAG+AGG | + | chr3_1:14494548-14494567 | Msa0350010:CDS | 45.0% | |
| CTCCATGAATCTTCACCAGA+GGG | + | chr3_1:14494549-14494568 | Msa0350010:CDS | 45.0% | |
| !! | ACTGGAATGAAGTTTGCTGC+CGG | - | chr3_1:14494604-14494623 | None:intergenic | 45.0% |
| TCATTCCAGTTCGAAGAAGG+TGG | + | chr3_1:14494614-14494633 | Msa0350010:CDS | 45.0% | |
| AAATGCCACCTTCTTCGAAC+TGG | - | chr3_1:14494622-14494641 | None:intergenic | 45.0% | |
| TCCAGAAAACGCAGACTTGC+CGG | + | chr3_1:14489314-14489333 | Msa0350010:five_prime_UTR | 50.0% | |
| !! | AGAACCCACTTGGGTTAGTC+TGG | + | chr3_1:14489983-14490002 | Msa0350010:intron | 50.0% |
| ACCACCAGACTAACCCAAGT+GGG | - | chr3_1:14489990-14490009 | None:intergenic | 50.0% | |
| TACCACCAGACTAACCCAAG+TGG | - | chr3_1:14489991-14490010 | None:intergenic | 50.0% | |
| !! | GTGGTATTGACTTGGGACCT+GGG | + | chr3_1:14490005-14490024 | Msa0350010:intron | 50.0% |
| TCAAACCTGAGACCTTGAGG+AGG | - | chr3_1:14490039-14490058 | None:intergenic | 50.0% | |
| !! | AAAGGTACCTGATGAGGCGA+GGG | + | chr3_1:14490204-14490223 | Msa0350010:intron | 50.0% |
| GCTTCTGCAGTTGGCAAACT+TGG | + | chr3_1:14490945-14490964 | Msa0350010:CDS | 50.0% | |
| TCTGCAGTTGGCAAACTTGG+AGG | + | chr3_1:14490948-14490967 | Msa0350010:CDS | 50.0% | |
| !! | GTCATTAAGGGGTGTTGCAG+TGG | - | chr3_1:14491215-14491234 | None:intergenic | 50.0% |
| ! | TAAATGTGTGTGGCTGGCTG+GGG | + | chr3_1:14491239-14491258 | Msa0350010:intron | 50.0% |
| CTAGTGTACCTTAGGTGGCT+AGG | + | chr3_1:14491265-14491284 | Msa0350010:intron | 50.0% | |
| GCACCCTGTAATACTCGATG+TGG | - | chr3_1:14492031-14492050 | None:intergenic | 50.0% | |
| TGGTCCTGTGATAGGGACTT+GGG | - | chr3_1:14492149-14492168 | None:intergenic | 50.0% | |
| ! | TCTGAGGTGGTCCTGTGATA+GGG | - | chr3_1:14492156-14492175 | None:intergenic | 50.0% |
| !! | TTCTGAGGTGGTCCTGTGAT+AGG | - | chr3_1:14492157-14492176 | None:intergenic | 50.0% |
| TCAGAAAGCCGATGTCCCAA+CGG | + | chr3_1:14492171-14492190 | Msa0350010:intron | 50.0% | |
| TCAGAAAGGGCTACCAACAG+AGG | - | chr3_1:14492237-14492256 | None:intergenic | 50.0% | |
| ATGTAGTATGGGATGCTCGG+TGG | - | chr3_1:14492336-14492355 | None:intergenic | 50.0% | |
| GAGACTCCGGTATTATGTGG+TGG | - | chr3_1:14492376-14492395 | None:intergenic | 50.0% | |
| TGTTAACCCTCCGGTTCCTA+GGG | + | chr3_1:14492451-14492470 | Msa0350010:intron | 50.0% | |
| GCAGAACTCCGGATTACTAG+GGG | - | chr3_1:14492484-14492503 | None:intergenic | 50.0% | |
| CAGCAGAACTCCGGATTACT+AGG | - | chr3_1:14492486-14492505 | None:intergenic | 50.0% | |
| CTAGTAATCCGGAGTTCTGC+TGG | + | chr3_1:14492484-14492503 | Msa0350010:intron | 50.0% | |
| GATGGGAACAATTCTTGGCC+AGG | - | chr3_1:14492523-14492542 | None:intergenic | 50.0% | |
| ! | TTCTCCCGATTCGTCAAAGG+AGG | + | chr3_1:14492559-14492578 | Msa0350010:intron | 50.0% |
| TACGTTGCAGCCTTCAGCAT+TGG | - | chr3_1:14492710-14492729 | None:intergenic | 50.0% | |
| AATGATACTGGAGCTGACCG+CGG | - | chr3_1:14493267-14493286 | None:intergenic | 50.0% | |
| ! | GCTAGCACGTCTACGAGTTT+TGG | + | chr3_1:14493413-14493432 | Msa0350010:CDS | 50.0% |
| AATGTGGTACGCTGATGCTG+AGG | + | chr3_1:14493523-14493542 | Msa0350010:intron | 50.0% | |
| GGAGAATGAAAGTCAAGGCG+AGG | + | chr3_1:14494020-14494039 | Msa0350010:CDS | 50.0% | |
| ! | GACCAACATGACTCGGAAAC+AGG | + | chr3_1:14494375-14494394 | Msa0350010:CDS | 50.0% |
| CACCTGTTTCCGAGTCATGT+TGG | - | chr3_1:14494380-14494399 | None:intergenic | 50.0% | |
| AGCAGATGCTGCAGCTAAAG+AGG | + | chr3_1:14494401-14494420 | Msa0350010:CDS | 50.0% | |
| AGAGGATCCCTCTCATGTCA+AGG | + | chr3_1:14494419-14494438 | Msa0350010:CDS | 50.0% | |
| !! | GGAGACTGTGTTTGGTAGTG+AGG | + | chr3_1:14494491-14494510 | Msa0350010:CDS | 50.0% |
| !! | GTGTTTGGTAGTGAGGAAGG+AGG | + | chr3_1:14494498-14494517 | Msa0350010:CDS | 50.0% |
| CACCCTCTGGTGAAGATTCA+TGG | - | chr3_1:14494554-14494573 | None:intergenic | 50.0% | |
| AATGCATGCAAGTCACCCTC+TGG | - | chr3_1:14494567-14494586 | None:intergenic | 50.0% | |
| GAAGCACGCTGTGCAACACA+AGG | - | chr3_1:14489266-14489285 | None:intergenic | 55.0% | |
| AGAAAACGCAGACTTGCCGG+CGG | + | chr3_1:14489317-14489336 | Msa0350010:five_prime_UTR | 55.0% | |
| !! | ACCCACTTGGGTTAGTCTGG+TGG | + | chr3_1:14489986-14490005 | Msa0350010:intron | 55.0% |
| !! | GGTGGTATTGACTTGGGACC+TGG | + | chr3_1:14490004-14490023 | Msa0350010:intron | 55.0% |
| !! | GAAAGGTACCTGATGAGGCG+AGG | + | chr3_1:14490203-14490222 | Msa0350010:intron | 55.0% |
| ! | AAGGTACCTGATGAGGCGAG+GGG | + | chr3_1:14490205-14490224 | Msa0350010:intron | 55.0% |
| TCGCAGCTCCAATGTGAGTG+TGG | + | chr3_1:14490601-14490620 | Msa0350010:CDS | 55.0% | |
| GCTGGAAATAGGAACAGCGG+CGG | - | chr3_1:14490666-14490685 | None:intergenic | 55.0% | |
| ! | AAATGTGTGTGGCTGGCTGG+GGG | + | chr3_1:14491240-14491259 | Msa0350010:intron | 55.0% |
| GTGGTCCTGTGATAGGGACT+TGG | - | chr3_1:14492150-14492169 | None:intergenic | 55.0% | |
| !! | GTTGGGACATCGGCTTTCTG+AGG | - | chr3_1:14492172-14492191 | None:intergenic | 55.0% |
| GAGTACAGCCGTTGGGACAT+CGG | - | chr3_1:14492182-14492201 | None:intergenic | 55.0% | |
| GTGTTAACCCTCCGGTTCCT+AGG | + | chr3_1:14492450-14492469 | Msa0350010:intron | 55.0% | |
| GTTAACCCTCCGGTTCCTAG+GGG | + | chr3_1:14492452-14492471 | Msa0350010:intron | 55.0% | |
| TAATCCGGAGTTCTGCTGGG+AGG | + | chr3_1:14492488-14492507 | Msa0350010:intron | 55.0% | |
| CTTACCTCCCAGCAGAACTC+CGG | - | chr3_1:14492495-14492514 | None:intergenic | 55.0% | |
| GCTGGGAGGTAAGTAAAGCC+TGG | + | chr3_1:14492502-14492521 | Msa0350010:intron | 55.0% | |
| ! | GGGTTCTCCCGATTCGTCAA+AGG | + | chr3_1:14492556-14492575 | Msa0350010:intron | 55.0% |
| GAAAGTCAAGGCGAGGACAC+TGG | + | chr3_1:14494027-14494046 | Msa0350010:CDS | 55.0% | |
| ! | AACAAGTGGCCTTAGGGCGT+TGG | + | chr3_1:14494196-14494215 | Msa0350010:intron | 55.0% |
| ! | GCCGGCAAGTCTGCGTTTTC+TGG | - | chr3_1:14489318-14489337 | None:intergenic | 60.0% |
| ACTGGATGGACCAACTCCGC+CGG | - | chr3_1:14489336-14489355 | None:intergenic | 60.0% | |
| ! | GGAGTTGGTCCATCCAGTCC+AGG | + | chr3_1:14489338-14489357 | Msa0350010:five_prime_UTR | 60.0% |
| ! | TTGAGGAGGAGCACACTCCC+AGG | - | chr3_1:14490025-14490044 | None:intergenic | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTCA+AGG | + | chr3_1:14490024-14490043 | Msa0350010:intron | 60.0% |
| GTGCTCCTCCTCAAGGTCTC+AGG | + | chr3_1:14490031-14490050 | Msa0350010:intron | 60.0% | |
| GGACGGCAACGAGTCAGGAT+GGG | - | chr3_1:14490250-14490269 | None:intergenic | 60.0% | |
| ACTAGGGACGGCAACGAGTC+AGG | - | chr3_1:14490255-14490274 | None:intergenic | 60.0% | |
| AATAGGAACAGCGGCGGTGC+TGG | - | chr3_1:14490660-14490679 | None:intergenic | 60.0% | |
| ! | AATGTGTGTGGCTGGCTGGG+GGG | + | chr3_1:14491241-14491260 | Msa0350010:intron | 60.0% |
| ! | TGGGGGGGCTAGTGTACCTT+AGG | + | chr3_1:14491257-14491276 | Msa0350010:intron | 60.0% |
| ! | GGGGGCTAGTGTACCTTAGG+TGG | + | chr3_1:14491260-14491279 | Msa0350010:intron | 60.0% |
| TGCTCGACTGCTCAAGCGCT+TGG | + | chr3_1:14492048-14492067 | Msa0350010:intron | 60.0% | |
| GCTCGACTGCTCAAGCGCTT+GGG | + | chr3_1:14492049-14492068 | Msa0350010:intron | 60.0% | |
| CTCGACTGCTCAAGCGCTTG+GGG | + | chr3_1:14492050-14492069 | Msa0350010:intron | 60.0% | |
| !! | GGGACATCGGCTTTCTGAGG+TGG | - | chr3_1:14492169-14492188 | None:intergenic | 60.0% |
| ! | GGGAGGGTTCTCGAAGTGCT+TGG | - | chr3_1:14492267-14492286 | None:intergenic | 60.0% |
| GGAAGGGGCCCCTAGTAATC+CGG | + | chr3_1:14492473-14492492 | Msa0350010:intron | 60.0% | |
| AGTCAAGGCGAGGACACTGG+TGG | + | chr3_1:14494030-14494049 | Msa0350010:CDS | 60.0% | |
| TACCTGATGAGGCGAGGGGC+AGG | + | chr3_1:14490209-14490228 | Msa0350010:intron | 65.0% | |
| ACCTGATGAGGCGAGGGGCA+GGG | + | chr3_1:14490210-14490229 | Msa0350010:intron | 65.0% | |
| GGGACGGCAACGAGTCAGGA+TGG | - | chr3_1:14490251-14490270 | None:intergenic | 65.0% | |
| ! | ATGTGTGTGGCTGGCTGGGG+GGG | + | chr3_1:14491242-14491261 | Msa0350010:intron | 65.0% |
| ACCCTCCGGTTCCTAGGGGA+AGG | + | chr3_1:14492456-14492475 | Msa0350010:intron | 65.0% | |
| CCCTTCCCCTAGGAACCGGA+GGG | - | chr3_1:14492460-14492479 | None:intergenic | 65.0% | |
| CCCTCCGGTTCCTAGGGGAA+GGG | + | chr3_1:14492457-14492476 | Msa0350010:intron | 65.0% | |
| CCTCCGGTTCCTAGGGGAAG+GGG | + | chr3_1:14492458-14492477 | Msa0350010:intron | 65.0% | |
| TACTAGGGGCCCCTTCCCCT+AGG | - | chr3_1:14492470-14492489 | None:intergenic | 65.0% | |
| CGCAGACTTGCCGGCGGAGT+TGG | + | chr3_1:14489323-14489342 | Msa0350010:five_prime_UTR | 70.0% | |
| TCCCTGCCCCTCGCCTCATC+AGG | - | chr3_1:14490214-14490233 | None:intergenic | 70.0% | |
| CCCCTTCCCCTAGGAACCGG+AGG | - | chr3_1:14492461-14492480 | None:intergenic | 70.0% | |
| GGGCCCCTTCCCCTAGGAAC+CGG | - | chr3_1:14492464-14492483 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 14489254 | 14494942 | 14489254 | ID=Msa0350010;Name=Msa0350010 |
| chr3_1 | mRNA | 14489254 | 14494942 | 14489254 | ID=Msa0350010-mRNA-1;Parent=Msa0350010;Name=Msa0350010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|1|1|0.75|0.77|9|118|398 |
| chr3_1 | exon | 14489254 | 14489359 | 14489254 | ID=Msa0350010-mRNA-1:exon:3603;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14490514 | 14490696 | 14490514 | ID=Msa0350010-mRNA-1:exon:3604;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14490928 | 14491040 | 14490928 | ID=Msa0350010-mRNA-1:exon:3605;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14491752 | 14491830 | 14491752 | ID=Msa0350010-mRNA-1:exon:3606;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14492698 | 14492726 | 14492698 | ID=Msa0350010-mRNA-1:exon:3607;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14493350 | 14493443 | 14493350 | ID=Msa0350010-mRNA-1:exon:3608;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14493685 | 14493774 | 14493685 | ID=Msa0350010-mRNA-1:exon:3609;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14493916 | 14494111 | 14493916 | ID=Msa0350010-mRNA-1:exon:3610;Parent=Msa0350010-mRNA-1 |
| chr3_1 | exon | 14494373 | 14494942 | 14494373 | ID=Msa0350010-mRNA-1:exon:3611;Parent=Msa0350010-mRNA-1 |
| chr3_1 | five_prime_UTR | 14489254 | 14489359 | 14489254 | ID=Msa0350010-mRNA-1:five_prime_utr;Parent=Msa0350010-mRNA-1 |
| chr3_1 | five_prime_UTR | 14490514 | 14490552 | 14490514 | ID=Msa0350010-mRNA-1:five_prime_utr;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14490553 | 14490696 | 14490553 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14490928 | 14491040 | 14490928 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14491752 | 14491830 | 14491752 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14492698 | 14492726 | 14492698 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14493350 | 14493443 | 14493350 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14493685 | 14493774 | 14493685 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14493916 | 14494111 | 14493916 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | CDS | 14494373 | 14494824 | 14494373 | ID=Msa0350010-mRNA-1:cds;Parent=Msa0350010-mRNA-1 |
| chr3_1 | three_prime_UTR | 14494825 | 14494942 | 14494825 | ID=Msa0350010-mRNA-1:three_prime_utr;Parent=Msa0350010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
