Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645570 | RHN61140.1 | 98.394 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 5.06e-175 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645570 | sp|Q8L9G7|APH1_ARATH | 71.888 | 249 | 70 | 0 | 1 | 249 | 1 | 249 | 1.71e-136 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645570 | A0A396I6C4 | 98.394 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 2.42e-175 | 492 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0645570 | Msa0672690 | 0.805415 | 1.349896e-49 | -8.615850e-47 |
| Msa0645570 | Msa0963190 | 0.802295 | 6.004064e-49 | -8.615850e-47 |
| Msa0645570 | Msa0977360 | 0.814615 | 1.407842e-51 | -8.615850e-47 |
| Msa0350010 | Msa0645570 | 0.810094 | 1.367069e-50 | -8.615850e-47 |
| Msa0357650 | Msa0645570 | 0.839531 | 1.499016e-57 | -8.615850e-47 |
| Msa0555520 | Msa0645570 | 0.803166 | 3.968253e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645570 | MtrunA17_Chr4g0033411 | 98.394 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 4.65e-179 | 492 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645570 | AT2G31440.2 | 71.888 | 249 | 70 | 0 | 1 | 249 | 1 | 249 | 1.73e-137 | 387 |
| Msa0645570 | AT2G31440.1 | 71.888 | 249 | 70 | 0 | 1 | 249 | 1 | 249 | 1.73e-137 | 387 |
Find 64 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCAGACAATGGTAAATT+TGG | 0.174762 | 4_3:-50892986 | Msa0645570:intron |
| TCGATGGTCATTGCATTTAA+TGG | 0.182838 | 4_3:-50893989 | Msa0645570:CDS |
| CAATTTGCAGTACACTATTA+TGG | 0.241356 | 4_3:-50896698 | Msa0645570:intron |
| AAGTATGTACTCTGTTAAAT+TGG | 0.256616 | 4_3:-50892435 | Msa0645570:three_prime_UTR |
| CCCATTGTTCACGTTGTTGC+AGG | 0.280427 | 4_3:-50893929 | Msa0645570:CDS |
| TTCATTGTGGGAGGATGGTT+TGG | 0.299021 | 4_3:-50892903 | Msa0645570:CDS |
| TAATTGCGTTGTCTGGTATA+TGG | 0.302227 | 4_3:-50896665 | Msa0645570:CDS |
| CGATGGTCATTGCATTTAAT+GGG | 0.308439 | 4_3:-50893988 | Msa0645570:CDS |
| TACGAGTGATTTGGTCTGAT+TGG | 0.334870 | 4_3:+50892862 | None:intergenic |
| TCAAGATTGCAGTGAAATAA+AGG | 0.340631 | 4_3:+50892932 | None:intergenic |
| TATGTCCAGCAAAACTAAAA+AGG | 0.342371 | 4_3:-50892541 | Msa0645570:three_prime_UTR |
| ATCACTTACTACGAGTGATT+TGG | 0.349983 | 4_3:+50892853 | None:intergenic |
| TAAAAGATGGTTTCATTTCA+AGG | 0.370550 | 4_3:+50892380 | None:intergenic |
| CCAGCTGGTGGTTTGGGTCA+TGG | 0.378666 | 4_3:-50894451 | Msa0645570:intron |
| ACGAGTGATTTGGTCTGATT+GGG | 0.398058 | 4_3:+50892863 | None:intergenic |
| GTACATACTTTAAAATTTGA+AGG | 0.398353 | 4_3:+50892448 | None:intergenic |
| AGCCTATTAACTCCTGCATT+TGG | 0.402020 | 4_3:-50894400 | Msa0645570:CDS |
| CATTCAATTCAACTTCTGTA+TGG | 0.403798 | 4_3:-50896629 | Msa0645570:CDS |
| ATAAGCTTAATTGCGTTGTC+TGG | 0.405342 | 4_3:-50896672 | Msa0645570:CDS |
| ATGACAGTAGCAGCAGGAAT+CGG | 0.413581 | 4_3:-50896905 | Msa0645570:CDS |
| GACCAAATGCAGGAGTTAAT+AGG | 0.427619 | 4_3:+50894398 | None:intergenic |
| GGGTACGCGCTAATAGCATT+AGG | 0.454517 | 4_3:-50896884 | Msa0645570:CDS |
| AGAAGAGTGAGAATTAAGAA+TGG | 0.462756 | 4_3:+50896821 | None:intergenic |
| TCTTGACATTAATTCATTGT+GGG | 0.463070 | 4_3:-50892915 | Msa0645570:CDS |
| CCTGCAACAACGTGAACAAT+GGG | 0.463713 | 4_3:+50893929 | None:intergenic |
| TGACAGTAGCAGCAGGAATC+GGG | 0.475911 | 4_3:-50896904 | Msa0645570:CDS |
| ACATTGTGCAACTTAAAAGA+TGG | 0.477148 | 4_3:+50892367 | None:intergenic |
| TAATTCTCACTCTTCTCGCT+AGG | 0.480909 | 4_3:-50896814 | Msa0645570:intron |
| GGAAATGACGGAAACGAAGA+TGG | 0.486326 | 4_3:+50896850 | None:intergenic |
| AAGCAGGTTTATAAAAGTCT+TGG | 0.489160 | 4_3:-50892592 | Msa0645570:three_prime_UTR |
| CATACAGAAGTTGAATTGAA+TGG | 0.493497 | 4_3:+50896630 | None:intergenic |
| GATAAGATGCTGATTGCTCT+TGG | 0.502456 | 4_3:-50894762 | Msa0645570:intron |
| ATTAATTCATTGTGGGAGGA+TGG | 0.517338 | 4_3:-50892908 | Msa0645570:CDS |
| TTATCAACAAAATATGTAGC+TGG | 0.522125 | 4_3:+50894376 | None:intergenic |
| AAATGCAATGACCATCGAAA+AGG | 0.522782 | 4_3:+50893994 | None:intergenic |
| CAATGGTAAATTTGGCACCT+GGG | 0.524997 | 4_3:-50892978 | Msa0645570:CDS |
| ATCTTGACATTAATTCATTG+TGG | 0.526723 | 4_3:-50892916 | Msa0645570:CDS |
| TGGTGGTTTGGGTCATGGTG+TGG | 0.527028 | 4_3:-50894446 | Msa0645570:CDS |
| AGAAACTCTCACCAGAAAGA+AGG | 0.535005 | 4_3:+50894332 | None:intergenic |
| GAGAGGATGAGTATTGCATA+AGG | 0.536403 | 4_3:+50896606 | None:intergenic |
| TCCTGCAACAACGTGAACAA+TGG | 0.536699 | 4_3:+50893928 | None:intergenic |
| GCATTTAATGGGTATGCAGA+GGG | 0.537260 | 4_3:-50893977 | Msa0645570:CDS |
| AGAAGAATGACAGTAGCAGC+AGG | 0.542782 | 4_3:-50896911 | Msa0645570:exon |
| TCACGTTGTTGCAGGAATGC+TGG | 0.544048 | 4_3:-50893921 | Msa0645570:intron |
| TATGTAGCTGGACCAAATGC+AGG | 0.557794 | 4_3:+50894388 | None:intergenic |
| TTTCCAGAAGAAAAGTCTAA+GGG | 0.557868 | 4_3:+50896563 | None:intergenic |
| ACAATGGTAAATTTGGCACC+TGG | 0.563079 | 4_3:-50892979 | Msa0645570:CDS |
| TGACATTAATTCATTGTGGG+AGG | 0.571731 | 4_3:-50892912 | Msa0645570:CDS |
| AATGGTAAATTTGGCACCTG+GGG | 0.572234 | 4_3:-50892977 | Msa0645570:CDS |
| TCTATACAAAAGCTTCTCAA+AGG | 0.587784 | 4_3:-50892305 | None:intergenic |
| TGCATTTAATGGGTATGCAG+AGG | 0.592575 | 4_3:-50893978 | Msa0645570:CDS |
| GACCATCGAAAAGGTGTGGA+TGG | 0.606199 | 4_3:+50894003 | None:intergenic |
| CTTGAAAAGCAACAGAAGAG+AGG | 0.613078 | 4_3:+50896589 | None:intergenic |
| GATACAGAAGAACACGGCAT+GGG | 0.622659 | 4_3:+50894423 | None:intergenic |
| AAGTGAAATTTCAACATGTG+AGG | 0.626473 | 4_3:+50892486 | None:intergenic |
| TTATCTGTCAAGAAAAGATG+TGG | 0.627748 | 4_3:+50894780 | None:intergenic |
| TGATACAGAAGAACACGGCA+TGG | 0.628083 | 4_3:+50894422 | None:intergenic |
| CATTTAATGGGTATGCAGAG+GGG | 0.637698 | 4_3:-50893976 | Msa0645570:CDS |
| CAATGACCATCGAAAAGGTG+TGG | 0.645237 | 4_3:+50893999 | None:intergenic |
| GAAACGAAGATGGAGAGTGA+TGG | 0.646645 | 4_3:+50896860 | None:intergenic |
| GTATGCAGAGGGGAACAAAG+TGG | 0.674151 | 4_3:-50893966 | Msa0645570:CDS |
| ATTGCAGTGAAATAAAGGAG+AGG | 0.681616 | 4_3:+50892937 | None:intergenic |
| ATGGTAAATTTGGCACCTGG+GGG | 0.683358 | 4_3:-50892976 | Msa0645570:CDS |
| TAGGCTGATACAGAAGAACA+CGG | 0.746599 | 4_3:+50894417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGTAAATTGAATTTA+CGG | + | chr4_3:50893904-50893923 | None:intergenic | 10.0% |
| !!! | AAATTTTCAATAGATGTTTT+TGG | - | chr4_3:50893599-50893618 | Msa0645570:intron | 15.0% |
| !! | TATGCAAATTAATATTGATA+AGG | - | chr4_3:50894114-50894133 | Msa0645570:intron | 15.0% |
| !!! | TCATTAATTTTAAACAATCT+TGG | - | chr4_3:50894152-50894171 | Msa0645570:intron | 15.0% |
| !!! | CATTAATTTTAAACAATCTT+GGG | - | chr4_3:50894153-50894172 | Msa0645570:intron | 15.0% |
| !!! | TGGATTAATGTTTTATTTTT+TGG | - | chr4_3:50894394-50894413 | Msa0645570:CDS | 15.0% |
| !!! | TTAATGTTTTATTTTTTGGT+TGG | - | chr4_3:50894398-50894417 | Msa0645570:CDS | 15.0% |
| !! | TTACTGTAAAATTTAAGAAT+TGG | + | chr4_3:50894552-50894571 | None:intergenic | 15.0% |
| !! | ATAATAAACTTATTCAAATC+CGG | + | chr4_3:50894595-50894614 | None:intergenic | 15.0% |
| !! | ATTTGATATATTTACAACAT+AGG | - | chr4_3:50895472-50895491 | Msa0645570:intron | 15.0% |
| !! | TTTGATATATTTACAACATA+GGG | - | chr4_3:50895473-50895492 | Msa0645570:intron | 15.0% |
| !! | AAAAAAACAGAAATACTTTA+TGG | - | chr4_3:50895815-50895834 | Msa0645570:intron | 15.0% |
| !! | ATTAATGGTCAAAATTATAT+TGG | - | chr4_3:50896231-50896250 | Msa0645570:intron | 15.0% |
| !! | TGAGAGTAAATAATGAATAA+AGG | + | chr4_3:50892471-50892490 | None:intergenic | 20.0% |
| !!! | ACTCTCAATTTTGTTAATTT+AGG | - | chr4_3:50892484-50892503 | Msa0645570:three_prime_UTR | 20.0% |
| !!! | CTCTCAATTTTGTTAATTTA+GGG | - | chr4_3:50892485-50892504 | Msa0645570:three_prime_UTR | 20.0% |
| !! | GCAATTATTCTTGTTAATAT+TGG | - | chr4_3:50892900-50892919 | Msa0645570:CDS | 20.0% |
| !!! | ACTGTTCATTTTTTCTTTTT+GGG | + | chr4_3:50893756-50893775 | None:intergenic | 20.0% |
| !!! | TACTGTTCATTTTTTCTTTT+TGG | + | chr4_3:50893757-50893776 | None:intergenic | 20.0% |
| !!! | AACTTTTTTACAATCTGATA+AGG | - | chr4_3:50894301-50894320 | Msa0645570:intron | 20.0% |
| !! | GTAATAGCATTGTAATATTA+TGG | - | chr4_3:50894345-50894364 | Msa0645570:CDS | 20.0% |
| !! | AAATTTAAGAATTGGAAAAC+AGG | + | chr4_3:50894544-50894563 | None:intergenic | 20.0% |
| !! | TGAGAAAAGATACTATTTAT+TGG | - | chr4_3:50894721-50894740 | Msa0645570:intron | 20.0% |
| !! | ATAAAAAACAGTGAACAATT+TGG | + | chr4_3:50895200-50895219 | None:intergenic | 20.0% |
| !!! | CATAGTTTACATTATCATTT+TGG | - | chr4_3:50895610-50895629 | Msa0645570:intron | 20.0% |
| !! | ATATACGTGTCATAAAAAAA+AGG | - | chr4_3:50896165-50896184 | Msa0645570:intron | 20.0% |
| !!! | ATTTTTTCCCTTTCAATTAA+TGG | - | chr4_3:50896216-50896235 | Msa0645570:intron | 20.0% |
| !!! | ATTTTGACCATTAATTGAAA+GGG | + | chr4_3:50896226-50896245 | None:intergenic | 20.0% |
| !!! | AATTTTGACCATTAATTGAA+AGG | + | chr4_3:50896227-50896246 | None:intergenic | 20.0% |
| !!! | GTACATACTTTAAAATTTGA+AGG | + | chr4_3:50896812-50896831 | None:intergenic | 20.0% |
| !!! | GAGAATTAAGAATGGTTTTT+TGG | + | chr4_3:50892431-50892450 | None:intergenic | 25.0% |
| !! | TAATCAGAAAAAGCATGAAT+TGG | + | chr4_3:50892536-50892555 | None:intergenic | 25.0% |
| !!! | TTAGATGTTTTTAGAAACTG+AGG | - | chr4_3:50892924-50892943 | Msa0645570:CDS | 25.0% |
| !! | TGGTTTTTGATAGAATACTA+TGG | - | chr4_3:50893518-50893537 | Msa0645570:intron | 25.0% |
| ! | GTGACAATTTAAATATGCAT+AGG | + | chr4_3:50893654-50893673 | None:intergenic | 25.0% |
| ! | CTAATGTTACATGAATTGAA+TGG | + | chr4_3:50893692-50893711 | None:intergenic | 25.0% |
| ! | ATCTCAAACTTTGAATTTAC+AGG | - | chr4_3:50893923-50893942 | Msa0645570:CDS | 25.0% |
| ! | TATTCTGATGTGAATTCAAT+GGG | + | chr4_3:50893988-50894007 | None:intergenic | 25.0% |
| ! | TTATTCTGATGTGAATTCAA+TGG | + | chr4_3:50893989-50894008 | None:intergenic | 25.0% |
| !!! | GAAATCTGTGACTATTTTAA+TGG | - | chr4_3:50894323-50894342 | Msa0645570:intron | 25.0% |
| ! | AAAGAAAAGGGAAGATAATA+TGG | + | chr4_3:50894633-50894652 | None:intergenic | 25.0% |
| !! | ATATTATCTTCCCTTTTCTT+TGG | - | chr4_3:50894632-50894651 | Msa0645570:intron | 25.0% |
| !! | TATTATCTTCCCTTTTCTTT+GGG | - | chr4_3:50894633-50894652 | Msa0645570:intron | 25.0% |
| ! | AATGGAATTAGATTCAATCA+AGG | + | chr4_3:50894672-50894691 | None:intergenic | 25.0% |
| !! | ACAAGGGATTCATTTTATAA+TGG | + | chr4_3:50894690-50894709 | None:intergenic | 25.0% |
| ! | AAAAGACAATTCATCAATAC+AGG | + | chr4_3:50894775-50894794 | None:intergenic | 25.0% |
| ! | TTATCAACAAAATATGTAGC+TGG | + | chr4_3:50894884-50894903 | None:intergenic | 25.0% |
| ! | TAAATATACAGTTAAGCCTT+GGG | + | chr4_3:50895011-50895030 | None:intergenic | 25.0% |
| ! | ATAAATATACAGTTAAGCCT+TGG | + | chr4_3:50895012-50895031 | None:intergenic | 25.0% |
| ! | TTGTTTATGCACTAAAAACT+GGG | + | chr4_3:50895109-50895128 | None:intergenic | 25.0% |
| !!! | TGTTTTTTATATGATTGCAG+CGG | - | chr4_3:50895210-50895229 | Msa0645570:intron | 25.0% |
| ! | GAGATAGAGTATGTATAATA+GGG | + | chr4_3:50895395-50895414 | None:intergenic | 25.0% |
| ! | AGAGATAGAGTATGTATAAT+AGG | + | chr4_3:50895396-50895415 | None:intergenic | 25.0% |
| ! | TCAATTTGTAACAAATAGCT+GGG | + | chr4_3:50895449-50895468 | None:intergenic | 25.0% |
| ! | ATCAATTTGTAACAAATAGC+TGG | + | chr4_3:50895450-50895469 | None:intergenic | 25.0% |
| ! | ATAGTATAACTTTGCATCAT+TGG | + | chr4_3:50895510-50895529 | None:intergenic | 25.0% |
| !! | ATCTTACATCAAAAAGTATG+TGG | + | chr4_3:50895945-50895964 | None:intergenic | 25.0% |
| !!! | ACATACTTTTTGATGTAAGA+TGG | - | chr4_3:50895944-50895963 | Msa0645570:intron | 25.0% |
| !! | CAGTTTTCTTACATTATGAA+AGG | - | chr4_3:50896000-50896019 | Msa0645570:intron | 25.0% |
| ! | TATTCAGACAATGGTAAATT+TGG | - | chr4_3:50896271-50896290 | Msa0645570:intron | 25.0% |
| ! | ATCTTGACATTAATTCATTG+TGG | - | chr4_3:50896341-50896360 | Msa0645570:intron | 25.0% |
| ! | TCTTGACATTAATTCATTGT+GGG | - | chr4_3:50896342-50896361 | Msa0645570:intron | 25.0% |
| ! | TAGATTCATTTATCATCACT+GGG | - | chr4_3:50896606-50896625 | Msa0645570:CDS | 25.0% |
| !!! | AATTACCTTTTTAGTTTTGC+TGG | + | chr4_3:50896724-50896743 | None:intergenic | 25.0% |
| ! | AAGTATGTACTCTGTTAAAT+TGG | - | chr4_3:50896822-50896841 | Msa0645570:CDS | 25.0% |
| ! | TAAAAGATGGTTTCATTTCA+AGG | + | chr4_3:50896880-50896899 | None:intergenic | 25.0% |
| !!! | GAATGGTTTTTTGGAAATGA+CGG | + | chr4_3:50892422-50892441 | None:intergenic | 30.0% |
| AGAAGAGTGAGAATTAAGAA+TGG | + | chr4_3:50892439-50892458 | None:intergenic | 30.0% | |
| CAATTTGCAGTACACTATTA+TGG | - | chr4_3:50892559-50892578 | Msa0645570:three_prime_UTR | 30.0% | |
| CATACAGAAGTTGAATTGAA+TGG | + | chr4_3:50892630-50892649 | None:intergenic | 30.0% | |
| CATTCAATTCAACTTCTGTA+TGG | - | chr4_3:50892628-50892647 | Msa0645570:intron | 30.0% | |
| TTTCCAGAAGAAAAGTCTAA+GGG | + | chr4_3:50892697-50892716 | None:intergenic | 30.0% | |
| ! | TTTTCCAGAAGAAAAGTCTA+AGG | + | chr4_3:50892698-50892717 | None:intergenic | 30.0% |
| TCATAGGTAAAAAGTAGAGT+TGG | + | chr4_3:50892742-50892761 | None:intergenic | 30.0% | |
| GAAAATGTAACCACATACAT+TGG | - | chr4_3:50892807-50892826 | Msa0645570:intron | 30.0% | |
| AATAACCTGATAGATATCCT+TGG | - | chr4_3:50893066-50893085 | Msa0645570:intron | 30.0% | |
| ATAACCTGATAGATATCCTT+GGG | - | chr4_3:50893067-50893086 | Msa0645570:intron | 30.0% | |
| AGTTGAAGGGAAAATTGTAT+TGG | - | chr4_3:50893144-50893163 | Msa0645570:intron | 30.0% | |
| TGTTATACGAGATAAAGTGT+TGG | - | chr4_3:50893186-50893205 | Msa0645570:intron | 30.0% | |
| ! | GTTATACGAGATAAAGTGTT+GGG | - | chr4_3:50893187-50893206 | Msa0645570:intron | 30.0% |
| ATGCTCAATTTCCTTCATAT+TGG | + | chr4_3:50893223-50893242 | None:intergenic | 30.0% | |
| ! | TCTACCATCTTTTCTACTAT+AGG | + | chr4_3:50893341-50893360 | None:intergenic | 30.0% |
| !!! | ATCCTTCTTGATAGTTTTGT+AGG | + | chr4_3:50893470-50893489 | None:intergenic | 30.0% |
| AATGAACAGTAACTGATGAT+AGG | - | chr4_3:50893766-50893785 | Msa0645570:intron | 30.0% | |
| TGAACTGAAGTCTAATGAAT+TGG | + | chr4_3:50893861-50893880 | None:intergenic | 30.0% | |
| TCAGAGATTTACAGTTTAGT+TGG | - | chr4_3:50893878-50893897 | Msa0645570:intron | 30.0% | |
| !!! | GTGTAACTAGTTTTTTTTCC+AGG | - | chr4_3:50894175-50894194 | Msa0645570:intron | 30.0% |
| ! | GAATTAGTCACACAGTTTTT+AGG | - | chr4_3:50894206-50894225 | Msa0645570:intron | 30.0% |
| ACTGTGAAAAATATATGCCT+TGG | - | chr4_3:50894237-50894256 | Msa0645570:intron | 30.0% | |
| CTGTGAAAAATATATGCCTT+GGG | - | chr4_3:50894238-50894257 | Msa0645570:intron | 30.0% | |
| TGTGAAAAATATATGCCTTG+GGG | - | chr4_3:50894239-50894258 | Msa0645570:intron | 30.0% | |
| !! | TTGTAGGCTCATTGTTTTAT+TGG | - | chr4_3:50894267-50894286 | Msa0645570:intron | 30.0% |
| !! | TTCTTATGCTGGTTCTATTA+TGG | - | chr4_3:50894374-50894393 | Msa0645570:CDS | 30.0% |
| TTATCTGTCAAGAAAAGATG+TGG | + | chr4_3:50894480-50894499 | None:intergenic | 30.0% | |
| TAAGAAAAATCGAGACTTTC+CGG | - | chr4_3:50894518-50894537 | Msa0645570:intron | 30.0% | |
| !!! | TTTTCAAGTGTTTGTTTGAC+CGG | - | chr4_3:50894573-50894592 | Msa0645570:intron | 30.0% |
| ATTAGATTCAATCAAGGATC+TGG | + | chr4_3:50894666-50894685 | None:intergenic | 30.0% | |
| ! | ATTCTGCAGTTTCAAACTTT+TGG | - | chr4_3:50894974-50894993 | Msa0645570:intron | 30.0% |
| !!! | TTTGGAATTTTTTGTACCCA+AGG | - | chr4_3:50894992-50895011 | Msa0645570:intron | 30.0% |
| TGTTTATGCACTAAAAACTG+GGG | + | chr4_3:50895108-50895127 | None:intergenic | 30.0% | |
| GTTGTTTATGCACTAAAAAC+TGG | + | chr4_3:50895110-50895129 | None:intergenic | 30.0% | |
| AAAAACAGTGAACAATTTGG+AGG | + | chr4_3:50895197-50895216 | None:intergenic | 30.0% | |
| ! | AATAGAAGCTAGTGTGATTT+TGG | + | chr4_3:50895425-50895444 | None:intergenic | 30.0% |
| !!! | TCATTTTGGAGCTTGTTATT+TGG | - | chr4_3:50895624-50895643 | Msa0645570:intron | 30.0% |
| GTGACTTTCAATATTCACAA+GGG | + | chr4_3:50895679-50895698 | None:intergenic | 30.0% | |
| TGTGACTTTCAATATTCACA+AGG | + | chr4_3:50895680-50895699 | None:intergenic | 30.0% | |
| TATTGAAAGTCACATGACTA+AGG | - | chr4_3:50895686-50895705 | Msa0645570:intron | 30.0% | |
| ATTGAAAGTCACATGACTAA+GGG | - | chr4_3:50895687-50895706 | Msa0645570:intron | 30.0% | |
| AAACAAAGGTAACATAGTAG+CGG | + | chr4_3:50895863-50895882 | None:intergenic | 30.0% | |
| ! | TTTGATGTAAGATGGTGTTA+TGG | - | chr4_3:50895952-50895971 | Msa0645570:intron | 30.0% |
| ATGATTAACACAGTTTCTCT+GGG | - | chr4_3:50896123-50896142 | Msa0645570:intron | 30.0% | |
| AGGGAAAAAATCAAATCACA+AGG | + | chr4_3:50896207-50896226 | None:intergenic | 30.0% | |
| ! | CTGTTTCTTTATTCAGACAA+TGG | - | chr4_3:50896262-50896281 | Msa0645570:intron | 30.0% |
| TCAAGATTGCAGTGAAATAA+AGG | + | chr4_3:50896328-50896347 | None:intergenic | 30.0% | |
| GTATCTTTATGTATTCCAAC+CGG | + | chr4_3:50896478-50896497 | None:intergenic | 30.0% | |
| !! | CTCCTGTTTCTGATTTAAAT+GGG | - | chr4_3:50896539-50896558 | Msa0645570:intron | 30.0% |
| TACCCATTTAAATCAGAAAC+AGG | + | chr4_3:50896544-50896563 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATTTAAATGGGT+AGG | - | chr4_3:50896543-50896562 | Msa0645570:intron | 30.0% |
| GTTTCTGATTTAAATGGGTA+GGG | - | chr4_3:50896544-50896563 | Msa0645570:intron | 30.0% | |
| CTAGATTCATTTATCATCAC+TGG | - | chr4_3:50896605-50896624 | Msa0645570:CDS | 30.0% | |
| AAGCAGGTTTATAAAAGTCT+TGG | - | chr4_3:50896665-50896684 | Msa0645570:CDS | 30.0% | |
| TATGTCCAGCAAAACTAAAA+AGG | - | chr4_3:50896716-50896735 | Msa0645570:intron | 30.0% | |
| AAGTGAAATTTCAACATGTG+AGG | + | chr4_3:50896774-50896793 | None:intergenic | 30.0% | |
| ACATTGTGCAACTTAAAAGA+TGG | + | chr4_3:50896893-50896912 | None:intergenic | 30.0% | |
| ATAAGCTTAATTGCGTTGTC+TGG | - | chr4_3:50892585-50892604 | Msa0645570:three_prime_UTR | 35.0% | |
| TAATTGCGTTGTCTGGTATA+TGG | - | chr4_3:50892592-50892611 | Msa0645570:three_prime_UTR | 35.0% | |
| TGTTTGTGTGAGTGTATCAT+AGG | + | chr4_3:50892758-50892777 | None:intergenic | 35.0% | |
| TGCTTAAAAGCTATGCAACA+TGG | + | chr4_3:50892883-50892902 | None:intergenic | 35.0% | |
| !!! | ATGTTTTTAGAAACTGAGGC+TGG | - | chr4_3:50892928-50892947 | Msa0645570:CDS | 35.0% |
| !! | ACTAAGTACTCTTTAGAGCT+TGG | - | chr4_3:50893000-50893019 | Msa0645570:intron | 35.0% |
| AAAAAAGAAATCCGACCTAC+CGG | + | chr4_3:50893107-50893126 | None:intergenic | 35.0% | |
| !! | AAAGTACTGCTCAAGTTGAA+GGG | - | chr4_3:50893131-50893150 | Msa0645570:intron | 35.0% |
| GGGAAAATTGTATTGGACAA+CGG | - | chr4_3:50893151-50893170 | Msa0645570:intron | 35.0% | |
| TTTATCTCGTATAACATCGC+CGG | + | chr4_3:50893182-50893201 | None:intergenic | 35.0% | |
| GTGGTAAAGAACCAATATGA+AGG | - | chr4_3:50893209-50893228 | Msa0645570:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGA+TGG | - | chr4_3:50893334-50893353 | Msa0645570:intron | 35.0% | |
| TGTTGTAAGGAGAGTAGATT+AGG | - | chr4_3:50893409-50893428 | Msa0645570:intron | 35.0% | |
| GACCTACAAAACTATCAAGA+AGG | - | chr4_3:50893465-50893484 | Msa0645570:intron | 35.0% | |
| ACTACGCGAACTAAAGTATA+TGG | + | chr4_3:50893835-50893854 | None:intergenic | 35.0% | |
| ACTGAAGTCTAATGAATTGG+AGG | + | chr4_3:50893858-50893877 | None:intergenic | 35.0% | |
| ATTGCTTAAGAGATTGAGTG+AGG | - | chr4_3:50894055-50894074 | Msa0645570:intron | 35.0% | |
| ! | TGACTAATTCTAGTTACACC+TGG | + | chr4_3:50894196-50894215 | None:intergenic | 35.0% |
| !! | ATTGTTTTATTGGCCTCAGA+CGG | - | chr4_3:50894277-50894296 | Msa0645570:intron | 35.0% |
| TGTAAAAAAGTTTCCGTCTG+AGG | + | chr4_3:50894293-50894312 | None:intergenic | 35.0% | |
| ! | TATGGTGATGTTTCTTATGC+TGG | - | chr4_3:50894363-50894382 | Msa0645570:CDS | 35.0% |
| !!! | TTTTTTGGTTGGTGTTGTGT+AGG | - | chr4_3:50894409-50894428 | Msa0645570:CDS | 35.0% |
| TTAAGAATTGGAAAACAGGC+CGG | + | chr4_3:50894540-50894559 | None:intergenic | 35.0% | |
| GGTTAAATGCCCAAAGAAAA+GGG | + | chr4_3:50894645-50894664 | None:intergenic | 35.0% | |
| TGGTTAAATGCCCAAAGAAA+AGG | + | chr4_3:50894646-50894665 | None:intergenic | 35.0% | |
| TCTCAATAGCATCACAACAA+GGG | + | chr4_3:50894706-50894725 | None:intergenic | 35.0% | |
| TTCTCAATAGCATCACAACA+AGG | + | chr4_3:50894707-50894726 | None:intergenic | 35.0% | |
| !!! | TTTTCCATTTTTTTGCCAGC+TGG | - | chr4_3:50894791-50894810 | Msa0645570:CDS | 35.0% |
| !! | ATTCCGTTTTTCCTTCTTTC+TGG | - | chr4_3:50894914-50894933 | Msa0645570:intron | 35.0% |
| TCACCAGAAAGAAGGAAAAA+CGG | + | chr4_3:50894920-50894939 | None:intergenic | 35.0% | |
| TTCCATGCATATGAGAACTA+GGG | + | chr4_3:50894955-50894974 | None:intergenic | 35.0% | |
| ATTCCATGCATATGAGAACT+AGG | + | chr4_3:50894956-50894975 | None:intergenic | 35.0% | |
| GTGAATCTATAGAGATCGAT+TGG | - | chr4_3:50895041-50895060 | Msa0645570:intron | 35.0% | |
| GGTTTAAGAGAATCTTGAAG+TGG | - | chr4_3:50895068-50895087 | Msa0645570:intron | 35.0% | |
| AAATGCAATGACCATCGAAA+AGG | + | chr4_3:50895266-50895285 | None:intergenic | 35.0% | |
| TCGATGGTCATTGCATTTAA+TGG | - | chr4_3:50895268-50895287 | Msa0645570:intron | 35.0% | |
| CGATGGTCATTGCATTTAAT+GGG | - | chr4_3:50895269-50895288 | Msa0645570:intron | 35.0% | |
| GTTCATTAGTTGCACAACAA+AGG | + | chr4_3:50895535-50895554 | None:intergenic | 35.0% | |
| !!! | ATCGTGTCCAGTTTGTTTTA+CGG | - | chr4_3:50895587-50895606 | Msa0645570:intron | 35.0% |
| AACTATGCCGTAAAACAAAC+TGG | + | chr4_3:50895597-50895616 | None:intergenic | 35.0% | |
| AAATACACAGAACAGTGATG+TGG | - | chr4_3:50895714-50895733 | Msa0645570:intron | 35.0% | |
| GTGGTAGCAAACAAAAACAA+AGG | + | chr4_3:50895877-50895896 | None:intergenic | 35.0% | |
| ACAAAGTTAAAGCAATGCCA+AGG | + | chr4_3:50895910-50895929 | None:intergenic | 35.0% | |
| !! | AAGATGGTGTTATGGTTTGT+TGG | - | chr4_3:50895960-50895979 | Msa0645570:intron | 35.0% |
| !! | AGATGGTGTTATGGTTTGTT+GGG | - | chr4_3:50895961-50895980 | Msa0645570:intron | 35.0% |
| ! | CTTACATTATGAAAGGCATG+CGG | - | chr4_3:50896007-50896026 | Msa0645570:intron | 35.0% |
| CATGATTAACACAGTTTCTC+TGG | - | chr4_3:50896122-50896141 | Msa0645570:intron | 35.0% | |
| ATTGCAGTGAAATAAAGGAG+AGG | + | chr4_3:50896323-50896342 | None:intergenic | 35.0% | |
| TGACATTAATTCATTGTGGG+AGG | - | chr4_3:50896345-50896364 | Msa0645570:intron | 35.0% | |
| ATTAATTCATTGTGGGAGGA+TGG | - | chr4_3:50896349-50896368 | Msa0645570:intron | 35.0% | |
| ATCACTTACTACGAGTGATT+TGG | + | chr4_3:50896407-50896426 | None:intergenic | 35.0% | |
| TTTATGTATTCCAACCGGAA+TGG | + | chr4_3:50896473-50896492 | None:intergenic | 35.0% | |
| ATACCAGTAGTTGTATTGCA+TGG | - | chr4_3:50896494-50896513 | Msa0645570:intron | 35.0% | |
| TTTCCATGCAATACAACTAC+TGG | + | chr4_3:50896500-50896519 | None:intergenic | 35.0% | |
| !! | GCTCCTGTTTCTGATTTAAA+TGG | - | chr4_3:50896538-50896557 | Msa0645570:intron | 35.0% |
| TTAAATGGGTAGGGTTACTA+TGG | - | chr4_3:50896553-50896572 | Msa0645570:intron | 35.0% | |
| TAAATGGGTAGGGTTACTAT+GGG | - | chr4_3:50896554-50896573 | Msa0645570:intron | 35.0% | |
| TAATTCTCACTCTTCTCGCT+AGG | - | chr4_3:50892443-50892462 | Msa0645570:three_prime_UTR | 40.0% | |
| ! | GAGAGGATGAGTATTGCATA+AGG | + | chr4_3:50892654-50892673 | None:intergenic | 40.0% |
| CTTGAAAAGCAACAGAAGAG+AGG | + | chr4_3:50892671-50892690 | None:intergenic | 40.0% | |
| ! | AAGCCCTTAGACTTTTCTTC+TGG | - | chr4_3:50892691-50892710 | Msa0645570:intron | 40.0% |
| ATGACCCAAGGATATCTATC+AGG | + | chr4_3:50893074-50893093 | None:intergenic | 40.0% | |
| GATAGATATCCTTGGGTCAT+TGG | - | chr4_3:50893074-50893093 | Msa0645570:intron | 40.0% | |
| !! | GAAAGTACTGCTCAAGTTGA+AGG | - | chr4_3:50893130-50893149 | Msa0645570:intron | 40.0% |
| !! | ATACGAGATAAAGTGTTGGG+TGG | - | chr4_3:50893190-50893209 | Msa0645570:intron | 40.0% |
| AATTGAGCATAGCAGAGATG+AGG | - | chr4_3:50893233-50893252 | Msa0645570:intron | 40.0% | |
| ATAGCAGAGATGAGGATGTT+GGG | - | chr4_3:50893241-50893260 | Msa0645570:intron | 40.0% | |
| ACATTAGAGAGAGAGAGAGT+TGG | - | chr4_3:50893308-50893327 | Msa0645570:intron | 40.0% | |
| CATTAGAGAGAGAGAGAGTT+GGG | - | chr4_3:50893309-50893328 | Msa0645570:intron | 40.0% | |
| ATTAGAGAGAGAGAGAGTTG+GGG | - | chr4_3:50893310-50893329 | Msa0645570:intron | 40.0% | |
| AGATGGTAGAAGCTAGACTT+AGG | - | chr4_3:50893351-50893370 | Msa0645570:intron | 40.0% | |
| TGTAAGGAGAGTAGATTAGG+TGG | - | chr4_3:50893412-50893431 | Msa0645570:intron | 40.0% | |
| GGATCTAGAGATCAATGAGT+TGG | - | chr4_3:50893486-50893505 | Msa0645570:intron | 40.0% | |
| ! | CAATGAGTTGGAGAAAGACA+TGG | - | chr4_3:50893498-50893517 | Msa0645570:intron | 40.0% |
| TGAGTGAGGTGAAGATTTAG+AGG | - | chr4_3:50894069-50894088 | Msa0645570:intron | 40.0% | |
| ! | GTGAAGATTTAGAGGAGTGT+GGG | - | chr4_3:50894077-50894096 | Msa0645570:intron | 40.0% |
| ! | TGAAGATTTAGAGGAGTGTG+GGG | - | chr4_3:50894078-50894097 | Msa0645570:intron | 40.0% |
| AAAATATATGCCTTGGGGAG+AGG | - | chr4_3:50894244-50894263 | Msa0645570:intron | 40.0% | |
| ! | GATAAGATGCTGATTGCTCT+TGG | - | chr4_3:50894495-50894514 | Msa0645570:intron | 40.0% |
| TAGGCTGATACAGAAGAACA+CGG | + | chr4_3:50894843-50894862 | None:intergenic | 40.0% | |
| AGCCTATTAACTCCTGCATT+TGG | - | chr4_3:50894857-50894876 | Msa0645570:intron | 40.0% | |
| GACCAAATGCAGGAGTTAAT+AGG | + | chr4_3:50894862-50894881 | None:intergenic | 40.0% | |
| AGAAACTCTCACCAGAAAGA+AGG | + | chr4_3:50894928-50894947 | None:intergenic | 40.0% | |
| ATGCATATGAGAACTAGGGT+TGG | + | chr4_3:50894951-50894970 | None:intergenic | 40.0% | |
| ! | AACCCTAGTTCTCATATGCA+TGG | - | chr4_3:50894950-50894969 | Msa0645570:intron | 40.0% |
| CTATAGAGATCGATTGGAGT+TGG | - | chr4_3:50895047-50895066 | Msa0645570:intron | 40.0% | |
| ! | TGCATTTAATGGGTATGCAG+AGG | - | chr4_3:50895279-50895298 | Msa0645570:intron | 40.0% |
| ! | GCATTTAATGGGTATGCAGA+GGG | - | chr4_3:50895280-50895299 | Msa0645570:intron | 40.0% |
| ! | CATTTAATGGGTATGCAGAG+GGG | - | chr4_3:50895281-50895300 | Msa0645570:intron | 40.0% |
| !!! | GACGTAGGCTCTAAATTTTC+AGG | + | chr4_3:50895654-50895673 | None:intergenic | 40.0% |
| ATATTCACAAGGGATGACGT+AGG | + | chr4_3:50895669-50895688 | None:intergenic | 40.0% | |
| CTTCTCTTGTACTTCAGCAT+AGG | - | chr4_3:50895743-50895762 | Msa0645570:intron | 40.0% | |
| !! | TTTCTCTGGGATGTAGGAAT+AGG | - | chr4_3:50896136-50896155 | Msa0645570:intron | 40.0% |
| ACAATGGTAAATTTGGCACC+TGG | - | chr4_3:50896278-50896297 | Msa0645570:intron | 40.0% | |
| CAATGGTAAATTTGGCACCT+GGG | - | chr4_3:50896279-50896298 | Msa0645570:intron | 40.0% | |
| AATGGTAAATTTGGCACCTG+GGG | - | chr4_3:50896280-50896299 | Msa0645570:intron | 40.0% | |
| !! | ACGAGTGATTTGGTCTGATT+GGG | + | chr4_3:50896397-50896416 | None:intergenic | 40.0% |
| !! | TACGAGTGATTTGGTCTGAT+TGG | + | chr4_3:50896398-50896417 | None:intergenic | 40.0% |
| AAATGGGTAGGGTTACTATG+GGG | - | chr4_3:50896555-50896574 | Msa0645570:CDS | 40.0% | |
| AGAAGAATGACAGTAGCAGC+AGG | - | chr4_3:50892346-50892365 | Msa0645570:three_prime_UTR | 45.0% | |
| ATGACAGTAGCAGCAGGAAT+CGG | - | chr4_3:50892352-50892371 | Msa0645570:three_prime_UTR | 45.0% | |
| GAAACGAAGATGGAGAGTGA+TGG | + | chr4_3:50892400-50892419 | None:intergenic | 45.0% | |
| ! | GGAAATGACGGAAACGAAGA+TGG | + | chr4_3:50892410-50892429 | None:intergenic | 45.0% |
| !! | CTTTAGCTCAGTTGGTAGAG+CGG | - | chr4_3:50893023-50893042 | Msa0645570:intron | 45.0% |
| ! | ATATCCTTGGGTCATTGGCT+CGG | - | chr4_3:50893079-50893098 | Msa0645570:intron | 45.0% |
| GTATTGGACAACGGTAAGAC+CGG | - | chr4_3:50893160-50893179 | Msa0645570:intron | 45.0% | |
| CATAGCAGAGATGAGGATGT+TGG | - | chr4_3:50893240-50893259 | Msa0645570:intron | 45.0% | |
| GGATGTGTGGTAAGACTAGA+CGG | - | chr4_3:50893266-50893285 | Msa0645570:intron | 45.0% | |
| GATGTGTGGTAAGACTAGAC+GGG | - | chr4_3:50893267-50893286 | Msa0645570:intron | 45.0% | |
| TGGTAGAAGCTAGACTTAGG+TGG | - | chr4_3:50893354-50893373 | Msa0645570:intron | 45.0% | |
| GACCTGTGAATGCTGTTGTA+AGG | - | chr4_3:50893396-50893415 | Msa0645570:intron | 45.0% | |
| CTCCTTACAACAGCATTCAC+AGG | + | chr4_3:50893401-50893420 | None:intergenic | 45.0% | |
| AAGGAGAGTAGATTAGGTGG+AGG | - | chr4_3:50893415-50893434 | Msa0645570:intron | 45.0% | |
| AGGAGAGTAGATTAGGTGGA+GGG | - | chr4_3:50893416-50893435 | Msa0645570:intron | 45.0% | |
| ! | AAGCTTTATCCCACTCGATG+GGG | + | chr4_3:50893567-50893586 | None:intergenic | 45.0% |
| ! | CAAGCTTTATCCCACTCGAT+GGG | + | chr4_3:50893568-50893587 | None:intergenic | 45.0% |
| GGTGAAGATTTAGAGGAGTG+TGG | - | chr4_3:50894076-50894095 | Msa0645570:intron | 45.0% | |
| ! | GAAGATTTAGAGGAGTGTGG+GGG | - | chr4_3:50894079-50894098 | Msa0645570:intron | 45.0% |
| !! | TTTGGTTGGTGTTGTGTAGG+AGG | - | chr4_3:50894412-50894431 | Msa0645570:CDS | 45.0% |
| !!! | TCCATTTTTTTGCCAGCTGG+TGG | - | chr4_3:50894794-50894813 | Msa0645570:CDS | 45.0% |
| ACCACCAGCTGGCAAAAAAA+TGG | + | chr4_3:50894798-50894817 | None:intergenic | 45.0% | |
| !!! | TTTTTTGCCAGCTGGTGGTT+TGG | - | chr4_3:50894799-50894818 | Msa0645570:CDS | 45.0% |
| ! | TTTTTGCCAGCTGGTGGTTT+GGG | - | chr4_3:50894800-50894819 | Msa0645570:CDS | 45.0% |
| GATACAGAAGAACACGGCAT+GGG | + | chr4_3:50894837-50894856 | None:intergenic | 45.0% | |
| TGATACAGAAGAACACGGCA+TGG | + | chr4_3:50894838-50894857 | None:intergenic | 45.0% | |
| TATGTAGCTGGACCAAATGC+AGG | + | chr4_3:50894872-50894891 | None:intergenic | 45.0% | |
| GTGCATAAACAACAGCGACT+TGG | - | chr4_3:50895117-50895136 | Msa0645570:intron | 45.0% | |
| CAATGACCATCGAAAAGGTG+TGG | + | chr4_3:50895261-50895280 | None:intergenic | 45.0% | |
| CCTGCAACAACGTGAACAAT+GGG | + | chr4_3:50895331-50895350 | None:intergenic | 45.0% | |
| TCCTGCAACAACGTGAACAA+TGG | + | chr4_3:50895332-50895351 | None:intergenic | 45.0% | |
| GCAATGCCAAGGAAACTGAA+GGG | + | chr4_3:50895899-50895918 | None:intergenic | 45.0% | |
| AGCAATGCCAAGGAAACTGA+AGG | + | chr4_3:50895900-50895919 | None:intergenic | 45.0% | |
| !! | GGTGTTATGGTTTGTTGGGT+CGG | - | chr4_3:50895965-50895984 | Msa0645570:intron | 45.0% |
| !! | GTGTTATGGTTTGTTGGGTC+GGG | - | chr4_3:50895966-50895985 | Msa0645570:intron | 45.0% |
| GTAAGAAAACTGCTGTACGC+TGG | + | chr4_3:50895992-50896011 | None:intergenic | 45.0% | |
| ACTACTCTGACTTCACTGAG+CGG | + | chr4_3:50896063-50896082 | None:intergenic | 45.0% | |
| !! | ACACAGTTTCTCTGGGATGT+AGG | - | chr4_3:50896130-50896149 | Msa0645570:intron | 45.0% |
| ATGGTAAATTTGGCACCTGG+GGG | - | chr4_3:50896281-50896300 | Msa0645570:intron | 45.0% | |
| TTCATTGTGGGAGGATGGTT+TGG | - | chr4_3:50896354-50896373 | Msa0645570:intron | 45.0% | |
| ACTTCATGTCCTCACCATTC+CGG | - | chr4_3:50896456-50896475 | Msa0645570:intron | 45.0% | |
| ! | GAAACAGGAGCATGACATCA+AGG | + | chr4_3:50896529-50896548 | None:intergenic | 45.0% |
| AATGGGTAGGGTTACTATGG+GGG | - | chr4_3:50896556-50896575 | Msa0645570:CDS | 45.0% | |
| AAGTCTCTGTTTGCAGAAGC+AGG | - | chr4_3:50896649-50896668 | Msa0645570:CDS | 45.0% | |
| !!! | TTTTTTTTTAAATTGTAAAT+AGG | + | chr4_3:50895799-50895818 | None:intergenic | 5.0% |
| TGACAGTAGCAGCAGGAATC+GGG | - | chr4_3:50892353-50892372 | Msa0645570:three_prime_UTR | 50.0% | |
| GGGTACGCGCTAATAGCATT+AGG | - | chr4_3:50892373-50892392 | Msa0645570:three_prime_UTR | 50.0% | |
| ACGCGCGATACCAATGTATG+TGG | + | chr4_3:50892820-50892839 | None:intergenic | 50.0% | |
| !! | AGAAACTGAGGCTGGCTTAG+TGG | - | chr4_3:50892936-50892955 | Msa0645570:CDS | 50.0% |
| !! | GAGCTTGGCTTTAGCTCAGT+TGG | - | chr4_3:50893015-50893034 | Msa0645570:intron | 50.0% |
| CAGAGATGAGGATGTTGGGT+TGG | - | chr4_3:50893245-50893264 | Msa0645570:intron | 50.0% | |
| !! | AGGATGTTGGGTTGGATGTG+TGG | - | chr4_3:50893253-50893272 | Msa0645570:intron | 50.0% |
| GGAGAGTAGATTAGGTGGAG+GGG | - | chr4_3:50893417-50893436 | Msa0645570:intron | 50.0% | |
| GACGCAAATCACTGGAGGTA+GGG | - | chr4_3:50893439-50893458 | Msa0645570:intron | 50.0% | |
| ACGCAAATCACTGGAGGTAG+GGG | - | chr4_3:50893440-50893459 | Msa0645570:intron | 50.0% | |
| TTTATCCCACTCGATGGGGT+CGG | + | chr4_3:50893563-50893582 | None:intergenic | 50.0% | |
| ! | CCAAGCTTTATCCCACTCGA+TGG | + | chr4_3:50893569-50893588 | None:intergenic | 50.0% |
| CCATCGAGTGGGATAAAGCT+TGG | - | chr4_3:50893566-50893585 | Msa0645570:intron | 50.0% | |
| ! | TAGAGGAGTGTGGGGGAAAA+AGG | - | chr4_3:50894086-50894105 | Msa0645570:intron | 50.0% |
| ! | AGAGGAGTGTGGGGGAAAAA+GGG | - | chr4_3:50894087-50894106 | Msa0645570:intron | 50.0% |
| ! | CACCATCCACACCTTTTCGA+TGG | - | chr4_3:50895252-50895271 | Msa0645570:intron | 50.0% |
| ! | GACCATCGAAAAGGTGTGGA+TGG | + | chr4_3:50895257-50895276 | None:intergenic | 50.0% |
| GTATGCAGAGGGGAACAAAG+TGG | - | chr4_3:50895291-50895310 | Msa0645570:intron | 50.0% | |
| CCCATTGTTCACGTTGTTGC+AGG | - | chr4_3:50895328-50895347 | Msa0645570:intron | 50.0% | |
| TCACGTTGTTGCAGGAATGC+TGG | - | chr4_3:50895336-50895355 | Msa0645570:intron | 50.0% | |
| GCTTTGCAGCTTCGTTGGTA+TGG | + | chr4_3:50895841-50895860 | None:intergenic | 50.0% | |
| CTACCACCCTTCAGTTTCCT+TGG | - | chr4_3:50895890-50895909 | Msa0645570:intron | 50.0% | |
| ATGCCAAGGAAACTGAAGGG+TGG | + | chr4_3:50895896-50895915 | None:intergenic | 50.0% | |
| GTATTCCAACCGGAATGGTG+AGG | + | chr4_3:50896468-50896487 | None:intergenic | 50.0% | |
| GGTATCGCGCGTGTTAGTGT+TGG | - | chr4_3:50892828-50892847 | Msa0645570:intron | 55.0% | |
| !! | TAGCTCAGTTGGTAGAGCGG+AGG | - | chr4_3:50893026-50893045 | Msa0645570:intron | 55.0% |
| ! | GTAGAGCGGAGGAGTGTAGT+GGG | - | chr4_3:50893037-50893056 | Msa0645570:intron | 55.0% |
| !! | TTGGGTCATTGGCTCGGATC+CGG | - | chr4_3:50893085-50893104 | Msa0645570:intron | 55.0% |
| GGACGCAAATCACTGGAGGT+AGG | - | chr4_3:50893438-50893457 | Msa0645570:intron | 55.0% | |
| ! | GAGGAGTGTGGGGGAAAAAG+GGG | - | chr4_3:50894088-50894107 | Msa0645570:intron | 55.0% |
| ! | AGGAGTGTGGGGGAAAAAGG+GGG | - | chr4_3:50894089-50894108 | Msa0645570:intron | 55.0% |
| ATGCCTTGGGGAGAGGTTGT+AGG | - | chr4_3:50894251-50894270 | Msa0645570:intron | 55.0% | |
| ! | TGGTGGTTTGGGTCATGGTG+TGG | - | chr4_3:50894811-50894830 | Msa0645570:CDS | 55.0% |
| TAGCGGCTTTGCAGCTTCGT+TGG | + | chr4_3:50895846-50895865 | None:intergenic | 55.0% | |
| CATGTCCTCACCATTCCGGT+TGG | - | chr4_3:50896460-50896479 | Msa0645570:intron | 55.0% | |
| ! | GGTAGAGCGGAGGAGTGTAG+TGG | - | chr4_3:50893036-50893055 | Msa0645570:intron | 60.0% |
| !! | AGCGGAGGAGTGTAGTGGGT+TGG | - | chr4_3:50893041-50893060 | Msa0645570:intron | 60.0% |
| GGATCCGAGCCAATGACCCA+AGG | + | chr4_3:50893086-50893105 | None:intergenic | 60.0% | |
| !! | GTCATTGGCTCGGATCCGGT+AGG | - | chr4_3:50893089-50893108 | Msa0645570:intron | 60.0% |
| !! | TTGGCTCGGATCCGGTAGGT+CGG | - | chr4_3:50893093-50893112 | Msa0645570:intron | 60.0% |
| GTGGAGGGGACGCAAATCAC+TGG | - | chr4_3:50893431-50893450 | Msa0645570:intron | 60.0% | |
| GAGGGGACGCAAATCACTGG+AGG | - | chr4_3:50893434-50893453 | Msa0645570:intron | 60.0% | |
| ATGTAGCCGACCCCATCGAG+TGG | - | chr4_3:50893554-50893573 | Msa0645570:intron | 60.0% | |
| TGTAGCCGACCCCATCGAGT+GGG | - | chr4_3:50893555-50893574 | Msa0645570:intron | 60.0% | |
| GAGCCTACAACCTCTCCCCA+AGG | + | chr4_3:50894257-50894276 | None:intergenic | 60.0% | |
| CCATGACCCAAACCACCAGC+TGG | + | chr4_3:50894809-50894828 | None:intergenic | 60.0% | |
| ! | CCAGCTGGTGGTTTGGGTCA+TGG | - | chr4_3:50894806-50894825 | Msa0645570:CDS | 60.0% |
| ATGCCAACAGCGCAACCCCC+AGG | + | chr4_3:50896299-50896318 | None:intergenic | 65.0% | |
| GCACCTGGGGGTTGCGCTGT+TGG | - | chr4_3:50896293-50896312 | Msa0645570:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 50892306 | 50896973 | 50892306 | ID=Msa0645570;Name=Msa0645570 |
| chr4_3 | mRNA | 50892306 | 50896973 | 50892306 | ID=Msa0645570-mRNA-1;Parent=Msa0645570;Name=Msa0645570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=46|1|1|1|0.83|0.85|7|308|249 |
| chr4_3 | exon | 50892306 | 50892614 | 50892306 | ID=Msa0645570-mRNA-1:exon:12259;Parent=Msa0645570-mRNA-1 |
| chr4_3 | exon | 50892862 | 50893001 | 50892862 | ID=Msa0645570-mRNA-1:exon:12258;Parent=Msa0645570-mRNA-1 |
| chr4_3 | exon | 50893922 | 50894049 | 50893922 | ID=Msa0645570-mRNA-1:exon:12257;Parent=Msa0645570-mRNA-1 |
| chr4_3 | exon | 50894344 | 50894469 | 50894344 | ID=Msa0645570-mRNA-1:exon:12256;Parent=Msa0645570-mRNA-1 |
| chr4_3 | exon | 50894763 | 50894848 | 50894763 | ID=Msa0645570-mRNA-1:exon:12255;Parent=Msa0645570-mRNA-1 |
| chr4_3 | exon | 50896555 | 50896710 | 50896555 | ID=Msa0645570-mRNA-1:exon:12254;Parent=Msa0645570-mRNA-1 |
| chr4_3 | exon | 50896815 | 50896973 | 50896815 | ID=Msa0645570-mRNA-1:exon:12253;Parent=Msa0645570-mRNA-1 |
| chr4_3 | five_prime_UTR | 50896928 | 50896973 | 50896928 | ID=Msa0645570-mRNA-1:five_prime_utr;Parent=Msa0645570-mRNA-1 |
| chr4_3 | CDS | 50896815 | 50896927 | 50896815 | ID=Msa0645570-mRNA-1:cds;Parent=Msa0645570-mRNA-1 |
| chr4_3 | CDS | 50896555 | 50896710 | 50896555 | ID=Msa0645570-mRNA-1:cds;Parent=Msa0645570-mRNA-1 |
| chr4_3 | CDS | 50894763 | 50894848 | 50894763 | ID=Msa0645570-mRNA-1:cds;Parent=Msa0645570-mRNA-1 |
| chr4_3 | CDS | 50894344 | 50894469 | 50894344 | ID=Msa0645570-mRNA-1:cds;Parent=Msa0645570-mRNA-1 |
| chr4_3 | CDS | 50893922 | 50894049 | 50893922 | ID=Msa0645570-mRNA-1:cds;Parent=Msa0645570-mRNA-1 |
| chr4_3 | CDS | 50892862 | 50893001 | 50892862 | ID=Msa0645570-mRNA-1:cds;Parent=Msa0645570-mRNA-1 |
| chr4_3 | CDS | 50892614 | 50892614 | 50892614 | ID=Msa0645570-mRNA-1:cds;Parent=Msa0645570-mRNA-1 |
| chr4_3 | three_prime_UTR | 50892306 | 50892613 | 50892306 | ID=Msa0645570-mRNA-1:three_prime_utr;Parent=Msa0645570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
