Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351760 | XP_003598209.1 | 96.601 | 559 | 16 | 1 | 1 | 556 | 1 | 559 | 0.0 | 1100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351760 | sp|O22780|FBT9_ARATH | 56.387 | 548 | 221 | 6 | 10 | 551 | 2 | 537 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351760 | G7IVP1 | 96.601 | 559 | 16 | 1 | 1 | 556 | 1 | 559 | 0.0 | 1100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0351760 | Msa0441610 | 0.913249 | 7.658016e-84 | -8.615850e-47 |
| Msa0351760 | Msa0489110 | 0.893663 | 5.097249e-75 | -8.615850e-47 |
| Msa0351760 | Msa1224690 | 0.814990 | 1.162475e-51 | -8.615850e-47 |
| Msa0351760 | Msa1407200 | 0.812440 | 4.235373e-51 | -8.615850e-47 |
| Msa0351760 | Msa1409050 | 0.824272 | 8.832203e-54 | -8.615850e-47 |
| Msa0351760 | Msa1409760 | 0.812155 | 4.887855e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351760 | MtrunA17_Chr3g0079271 | 96.601 | 559 | 16 | 1 | 1 | 556 | 1 | 559 | 0.0 | 1100 |
| Msa0351760 | MtrunA17_Chr2g0293351 | 45.558 | 439 | 216 | 5 | 96 | 523 | 21 | 447 | 8.58e-123 | 369 |
| Msa0351760 | MtrunA17_Chr2g0293371 | 41.226 | 359 | 190 | 4 | 174 | 521 | 9 | 357 | 1.88e-80 | 256 |
| Msa0351760 | MtrunA17_Chr3g0098661 | 32.000 | 475 | 265 | 5 | 95 | 511 | 13 | 487 | 1.01e-64 | 219 |
| Msa0351760 | MtrunA17_Chr2g0293361 | 42.803 | 264 | 140 | 2 | 261 | 524 | 1 | 253 | 6.31e-64 | 209 |
| Msa0351760 | MtrunA17_Chr1g0205221 | 29.798 | 396 | 266 | 5 | 106 | 495 | 120 | 509 | 8.84e-37 | 143 |
| Msa0351760 | MtrunA17_Chr1g0150001 | 28.395 | 405 | 270 | 7 | 121 | 517 | 75 | 467 | 2.64e-34 | 135 |
| Msa0351760 | MtrunA17_Chr1g0150031 | 29.299 | 157 | 111 | 0 | 355 | 511 | 5 | 161 | 9.96e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351760 | AT2G33280.1 | 56.387 | 548 | 221 | 6 | 10 | 551 | 2 | 537 | 0.0 | 565 |
| Msa0351760 | AT1G04570.1 | 55.835 | 557 | 226 | 6 | 1 | 556 | 5 | 542 | 2.28e-179 | 517 |
| Msa0351760 | AT2G33280.3 | 62.704 | 429 | 160 | 0 | 123 | 551 | 1 | 429 | 5.23e-179 | 511 |
| Msa0351760 | AT2G33280.2 | 61.127 | 355 | 138 | 0 | 197 | 551 | 1 | 355 | 1.26e-140 | 411 |
| Msa0351760 | AT1G04570.2 | 60.836 | 383 | 145 | 2 | 175 | 556 | 16 | 394 | 1.80e-129 | 384 |
| Msa0351760 | AT1G64890.1 | 42.723 | 426 | 230 | 3 | 101 | 519 | 22 | 440 | 5.80e-100 | 310 |
| Msa0351760 | AT5G54860.1 | 32.696 | 471 | 262 | 6 | 95 | 511 | 13 | 482 | 3.95e-66 | 223 |
| Msa0351760 | AT2G32040.1 | 24.806 | 516 | 339 | 9 | 19 | 495 | 20 | 525 | 6.13e-35 | 139 |
| Msa0351760 | AT2G32040.2 | 28.715 | 397 | 271 | 6 | 106 | 495 | 3 | 394 | 2.03e-33 | 132 |
| Msa0351760 | AT5G25050.1 | 24.413 | 426 | 300 | 7 | 117 | 533 | 66 | 478 | 1.37e-28 | 119 |
| Msa0351760 | AT1G79710.2 | 23.113 | 424 | 312 | 5 | 120 | 538 | 73 | 487 | 1.44e-24 | 107 |
| Msa0351760 | AT1G79710.1 | 23.113 | 424 | 312 | 5 | 120 | 538 | 73 | 487 | 1.44e-24 | 107 |
| Msa0351760 | AT5G25040.2 | 24.841 | 471 | 303 | 12 | 103 | 539 | 58 | 511 | 1.84e-24 | 107 |
| Msa0351760 | AT5G25040.4 | 24.834 | 451 | 303 | 11 | 103 | 539 | 58 | 486 | 1.50e-23 | 104 |
| Msa0351760 | AT5G10820.1 | 26.463 | 393 | 246 | 11 | 143 | 514 | 104 | 474 | 2.94e-23 | 103 |
| Msa0351760 | AT5G25040.1 | 26.158 | 367 | 239 | 10 | 103 | 459 | 58 | 402 | 5.66e-19 | 90.1 |
| Msa0351760 | AT1G79710.3 | 23.353 | 334 | 242 | 5 | 120 | 448 | 73 | 397 | 6.78e-19 | 89.4 |
| Msa0351760 | AT5G25040.5 | 24.501 | 351 | 238 | 8 | 202 | 539 | 3 | 339 | 8.03e-16 | 79.3 |
| Msa0351760 | AT5G25040.3 | 26.911 | 327 | 205 | 11 | 103 | 418 | 58 | 361 | 4.09e-14 | 74.7 |
Find 149 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAACAACCTACATTTA+TGG | 0.130903 | 3_1:-19113413 | Msa0351760:CDS |
| GATATGTACTCTAGCTATTT+TGG | 0.163551 | 3_1:-19110160 | Msa0351760:three_prime_UTR |
| AGAGGAGAATAAGAAGAAAA+AGG | 0.187976 | 3_1:-19113314 | Msa0351760:CDS |
| CTTTCTGATGTTATCTATAT+TGG | 0.193250 | 3_1:-19113091 | Msa0351760:CDS |
| GGTCAGTTGATGCTTCTTTC+AGG | 0.200974 | 3_1:-19111147 | Msa0351760:CDS |
| TTGTGATGTTTGTGTAAATT+TGG | 0.237519 | 3_1:+19113496 | None:intergenic |
| GATGCACTCATTGTACTTAT+TGG | 0.251954 | 3_1:+19113680 | None:intergenic |
| CCGTACTTTATAACCGATAT+TGG | 0.258220 | 3_1:-19111122 | Msa0351760:CDS |
| ATGCTTATATTGTGTGGATT+TGG | 0.263672 | 3_1:-19113259 | Msa0351760:CDS |
| TATGGCTAGTAATCTCAATT+TGG | 0.267578 | 3_1:-19113185 | Msa0351760:CDS |
| GATGCTCTTGTAGCTGAGTA+TGG | 0.275436 | 3_1:-19111588 | Msa0351760:CDS |
| GGTATTGGTTACAAGGGTTT+AGG | 0.283019 | 3_1:-19113237 | Msa0351760:CDS |
| GTTACTTCTTGATCTTGTTT+TGG | 0.301857 | 3_1:-19111043 | Msa0351760:CDS |
| GTTTAAACTCCTTCCTTTCT+CGG | 0.304522 | 3_1:-19110938 | Msa0351760:CDS |
| ATCGAACCAATCCATCTTAA+AGG | 0.311135 | 3_1:+19110724 | None:intergenic |
| GAGATAGAAAAGAATAATAA+AGG | 0.313895 | 3_1:+19113622 | None:intergenic |
| GGATCTGCACTGCGCCTATC+AGG | 0.329497 | 3_1:+19111079 | None:intergenic |
| CAAGGAGCGAACACCTCATT+TGG | 0.337799 | 3_1:+19110991 | None:intergenic |
| ATGATCAATTCTTACCTTTG+TGG | 0.339144 | 3_1:-19110557 | Msa0351760:three_prime_UTR |
| AATATCATGAACACGATTCT+TGG | 0.342943 | 3_1:+19111459 | None:intergenic |
| GCCACTGTTCCAATGCTTAC+GGG | 0.347306 | 3_1:-19111240 | Msa0351760:CDS |
| GGTTCAAGTACTAGTCAAAT+TGG | 0.348370 | 3_1:-19113292 | Msa0351760:CDS |
| TCAACAAGAGAGGATTCTTT+AGG | 0.351653 | 3_1:-19111399 | Msa0351760:CDS |
| TATTGTGTGGATTTGGGTAT+TGG | 0.353151 | 3_1:-19113252 | Msa0351760:CDS |
| ATATTTGAGATCAGTTGATA+TGG | 0.353975 | 3_1:+19110121 | None:intergenic |
| GTTGCAAGATTTAGAGTTGA+TGG | 0.359251 | 3_1:+19111366 | None:intergenic |
| CCATGAACGCGTATGATTGT+AGG | 0.365663 | 3_1:+19111544 | None:intergenic |
| ATCCTATCATCAATAGTTAG+TGG | 0.367560 | 3_1:-19110847 | Msa0351760:CDS |
| GAGTGTGTTTATTGAGAAAG+AGG | 0.371786 | 3_1:-19113332 | Msa0351760:CDS |
| CTGTGTCTGATAGCAAAATA+TGG | 0.376189 | 3_1:+19111215 | None:intergenic |
| AGACAGATAAATCTTAAATT+CGG | 0.377256 | 3_1:-19111018 | Msa0351760:CDS |
| CAAAAGAGGTATGTTTGTAT+AGG | 0.380117 | 3_1:-19110314 | Msa0351760:three_prime_UTR |
| TATGGGAAGAAACACAAAAT+TGG | 0.382333 | 3_1:-19111570 | Msa0351760:CDS |
| CCTACAATCATACGCGTTCA+TGG | 0.384503 | 3_1:-19111544 | Msa0351760:CDS |
| TGCTTATATTGTGTGGATTT+GGG | 0.394434 | 3_1:-19113258 | Msa0351760:CDS |
| CAGCTTTACTACCTTTAAGA+TGG | 0.403194 | 3_1:-19110735 | Msa0351760:CDS |
| AGCTGTGCTTCTCAGTAACT+TGG | 0.405069 | 3_1:-19111637 | Msa0351760:CDS |
| TGCCACTGTTCCAATGCTTA+CGG | 0.411546 | 3_1:-19111241 | Msa0351760:CDS |
| AGAGTTGGAAAAGTTGTGAT+TGG | 0.420716 | 3_1:-19110631 | Msa0351760:CDS |
| CTATGTTTGGATTCTTAACA+TGG | 0.425424 | 3_1:-19110418 | Msa0351760:three_prime_UTR |
| AGAGATCCTTCGCAGCCTTT+CGG | 0.426540 | 3_1:+19110895 | None:intergenic |
| GGATTTGGGTATTGGTTACA+AGG | 0.435925 | 3_1:-19113244 | Msa0351760:CDS |
| TTACTACCTTTAAGATGGAT+TGG | 0.436316 | 3_1:-19110730 | Msa0351760:CDS |
| CTAGACCAACCGATGATCAT+AGG | 0.439316 | 3_1:+19111177 | None:intergenic |
| AATGATCATGCAAGGATGAT+TGG | 0.442413 | 3_1:-19110530 | Msa0351760:three_prime_UTR |
| CCAATATCGGTTATAAAGTA+CGG | 0.443188 | 3_1:+19111122 | None:intergenic |
| TTAGCCGCAGGTGGAATCTT+AGG | 0.445298 | 3_1:-19111519 | Msa0351760:CDS |
| GAAGTAACGACGAAGCGTAT+AGG | 0.450700 | 3_1:+19111058 | None:intergenic |
| CACTTGTTAATAAGACCCTT+TGG | 0.450718 | 3_1:-19110215 | Msa0351760:three_prime_UTR |
| ATACCTCCAGTGATAATGTA+AGG | 0.452475 | 3_1:+19113052 | None:intergenic |
| ACCTATGTCACAGTCTGATT+CGG | 0.454694 | 3_1:-19110701 | Msa0351760:CDS |
| CATATAGGCGCGAAAGGGAA+TGG | 0.456974 | 3_1:-19110597 | Msa0351760:CDS |
| TGCTAGTTGTACAGATAGTA+AGG | 0.458544 | 3_1:+19111431 | None:intergenic |
| GATGTATTTATTACATTGAC+CGG | 0.462794 | 3_1:-19110286 | Msa0351760:three_prime_UTR |
| TCTGATGTTATCTATATTGG+TGG | 0.463711 | 3_1:-19113088 | Msa0351760:CDS |
| GCGCGTAGAAACAGAAGAGT+TGG | 0.479766 | 3_1:-19110646 | Msa0351760:CDS |
| ATCGGTTGGTCTAGAGTGAT+TGG | 0.481020 | 3_1:-19111168 | Msa0351760:CDS |
| TCTTTGCTCGGCATTACATC+CGG | 0.488077 | 3_1:-19110802 | Msa0351760:CDS |
| AGCCACTAACTATTGATGAT+AGG | 0.489495 | 3_1:+19110845 | None:intergenic |
| ATGGTGGCTAAACCACTCTA+TGG | 0.489848 | 3_1:-19113118 | Msa0351760:CDS |
| GTATTCTGCTAATCTTCCTA+TGG | 0.490689 | 3_1:-19113137 | Msa0351760:CDS |
| TGTTGTGAACATGTTATGAT+TGG | 0.491516 | 3_1:+19113469 | None:intergenic |
| GAATGCTAACATGTGTCCTT+AGG | 0.492353 | 3_1:-19110353 | Msa0351760:three_prime_UTR |
| GTAAGCACTTCACGTGCAGC+AGG | 0.495854 | 3_1:+19111672 | None:intergenic |
| GTTGGATTGGCCTCTTTGCT+CGG | 0.508973 | 3_1:-19110814 | Msa0351760:CDS |
| ATTTCATGATCAATGTCCTA+AGG | 0.509696 | 3_1:+19110337 | None:intergenic |
| TGTACAAGTTGCAATATTGA+AGG | 0.509895 | 3_1:+19113160 | None:intergenic |
| ATCCTTTGCAACTTCAGTAA+TGG | 0.515704 | 3_1:+19111608 | None:intergenic |
| AGATTTAGAGTTGATGGTTG+TGG | 0.516019 | 3_1:+19111372 | None:intergenic |
| TAGACAGTTCTACGAGGTTG+TGG | 0.517314 | 3_1:+19113839 | None:intergenic |
| TATTGGTGAATGAACAATGA+AGG | 0.522733 | 3_1:+19113697 | None:intergenic |
| TTCATCACAAAAGAATCCAT+TGG | 0.525638 | 3_1:-19113533 | Msa0351760:CDS |
| AATATGGAGCCCGTAAGCAT+TGG | 0.527587 | 3_1:+19111231 | None:intergenic |
| TAATGCATATAGGCGCGAAA+GGG | 0.528536 | 3_1:-19110602 | Msa0351760:CDS |
| TGAAATTGCAAGATGAATCA+TGG | 0.530359 | 3_1:+19113552 | None:intergenic |
| TCCGAATCAGACTGTGACAT+AGG | 0.530550 | 3_1:+19110700 | None:intergenic |
| TAAATTCGGAATTCCAAATG+AGG | 0.534129 | 3_1:-19111004 | Msa0351760:CDS |
| AAAATCCTACGCTTTGAAGC+AGG | 0.534347 | 3_1:+19110449 | None:intergenic |
| TTTGCGAACAGAACCGAGAA+AGG | 0.535403 | 3_1:+19110925 | None:intergenic |
| GATCCAACGATCCATAAAAG+TGG | 0.536954 | 3_1:+19111267 | None:intergenic |
| ATATAGGCGCGAAAGGGAAT+GGG | 0.537383 | 3_1:-19110596 | Msa0351760:CDS |
| ATTACATCCGGTGATTACTC+AGG | 0.538427 | 3_1:-19110790 | Msa0351760:CDS |
| AAACAAATGCTTATATTGTG+TGG | 0.539138 | 3_1:-19113265 | Msa0351760:CDS |
| AGAATCCCTTACATTATCAC+TGG | 0.541279 | 3_1:-19113058 | Msa0351760:CDS |
| CGAACAGAACCGAGAAAGGA+AGG | 0.544556 | 3_1:+19110929 | None:intergenic |
| TGTGAGCTAACAATGGCATA+AGG | 0.546268 | 3_1:+19110482 | None:intergenic |
| TTCTACGAGGTTGTGGCGAG+TGG | 0.546685 | 3_1:+19113846 | None:intergenic |
| AATAAAAGAGAGAGAAGAGA+GGG | 0.548563 | 3_1:+19113755 | None:intergenic |
| ATTGATCATGAAATCAAAAG+AGG | 0.549129 | 3_1:-19110328 | Msa0351760:three_prime_UTR |
| TGTAGATTGTTAAAATCCAA+AGG | 0.553682 | 3_1:+19110199 | None:intergenic |
| GCGTTCATGGCATTAGCCGC+AGG | 0.556853 | 3_1:-19111531 | Msa0351760:CDS |
| GATTTGGGTATTGGTTACAA+GGG | 0.557556 | 3_1:-19113243 | Msa0351760:CDS |
| GCTGTGCTTCTCAGTAACTT+GGG | 0.559091 | 3_1:-19111636 | Msa0351760:CDS |
| AACAAGTGTCTTAACGACAT+TGG | 0.561515 | 3_1:+19110230 | None:intergenic |
| ATCATGAACACGATTCTTGG+AGG | 0.564323 | 3_1:+19111462 | None:intergenic |
| TTTCCGATGAGAAACCTGAT+AGG | 0.566163 | 3_1:-19111093 | Msa0351760:CDS |
| GTAGATTGTTAAAATCCAAA+GGG | 0.568093 | 3_1:+19110200 | None:intergenic |
| CTTTGACAATTCACAAGGTG+TGG | 0.571816 | 3_1:+19110393 | None:intergenic |
| ATCCATTACTGAAGTTGCAA+AGG | 0.575712 | 3_1:-19111610 | Msa0351760:CDS |
| TTGGTTCGATTAATGCATAT+AGG | 0.577741 | 3_1:-19110612 | Msa0351760:CDS |
| GGGAAGAAACACAAAATTGG+CGG | 0.578871 | 3_1:-19111567 | Msa0351760:CDS |
| AATCTTGATCCTATGATCAT+CGG | 0.579039 | 3_1:-19111186 | Msa0351760:CDS |
| TCAAGTACTAGTCAAATTGG+AGG | 0.580285 | 3_1:-19113289 | Msa0351760:CDS |
| TTAATGCATATAGGCGCGAA+AGG | 0.580820 | 3_1:-19110603 | Msa0351760:CDS |
| TTATGTCCGAAAGGCTGCGA+AGG | 0.582846 | 3_1:-19110901 | Msa0351760:CDS |
| ATGCTCTTGTAGCTGAGTAT+GGG | 0.582866 | 3_1:-19111587 | Msa0351760:CDS |
| GGTTTGTTAATAATCACCAA+TGG | 0.584719 | 3_1:+19113517 | None:intergenic |
| AATTTCTTTCTCAACAAGAG+AGG | 0.586622 | 3_1:-19111409 | Msa0351760:CDS |
| TACCTCCAGTGATAATGTAA+GGG | 0.586765 | 3_1:+19113053 | None:intergenic |
| TGTGTGTCAACCATAAATGT+AGG | 0.588044 | 3_1:+19113403 | None:intergenic |
| ACCTTGTGAATTGTCAAAGG+TGG | 0.589692 | 3_1:-19110389 | Msa0351760:three_prime_UTR |
| AAGTGTCTTAACGACATTGG+AGG | 0.590034 | 3_1:+19110233 | None:intergenic |
| TCAGAAAGAATTCCATAGAG+TGG | 0.590482 | 3_1:+19113106 | None:intergenic |
| TCTTGCAACACAATCCATCT+CGG | 0.591171 | 3_1:-19111352 | Msa0351760:CDS |
| GTACAAGTTGCAATATTGAA+GGG | 0.593637 | 3_1:+19113161 | None:intergenic |
| ATCCAACGATCCATAAAAGT+GGG | 0.595254 | 3_1:+19111268 | None:intergenic |
| ATAGCTAGAGTACATATCAA+AGG | 0.595634 | 3_1:+19110165 | None:intergenic |
| TTCTGCTAATCTTCCTATGG+TGG | 0.599176 | 3_1:-19113134 | Msa0351760:CDS |
| TTCATGGCATTAGCCGCAGG+TGG | 0.601108 | 3_1:-19111528 | Msa0351760:CDS |
| CACACCTTGTGAATTGTCAA+AGG | 0.601536 | 3_1:-19110392 | Msa0351760:three_prime_UTR |
| CATGATCATTAAAGCCACAA+AGG | 0.601547 | 3_1:+19110543 | None:intergenic |
| GATTACTCAGGCTTGACTGT+GGG | 0.603520 | 3_1:-19110778 | Msa0351760:CDS |
| ATCTTAGGCAACTTGATCGG+TGG | 0.604287 | 3_1:-19111504 | Msa0351760:CDS |
| TTCGCAAATTTATGTCCGAA+AGG | 0.605242 | 3_1:-19110910 | Msa0351760:CDS |
| GCCCGTAAGCATTGGAACAG+TGG | 0.605847 | 3_1:+19111239 | None:intergenic |
| GAATAAAAGAGAGAGAAGAG+AGG | 0.607153 | 3_1:+19113754 | None:intergenic |
| ATAGGATCAAAGCTGATGCA+AGG | 0.610715 | 3_1:+19110863 | None:intergenic |
| TGCCTCCTGCTTCAAAGCGT+AGG | 0.610870 | 3_1:-19110454 | Msa0351760:three_prime_UTR |
| GGAATCTTAGGCAACTTGAT+CGG | 0.615694 | 3_1:-19111507 | Msa0351760:CDS |
| ATCCTACGCTTTGAAGCAGG+AGG | 0.619848 | 3_1:+19110452 | None:intergenic |
| TTGATCCTATGATCATCGGT+TGG | 0.620203 | 3_1:-19111182 | Msa0351760:CDS |
| ATCCCTTACATTATCACTGG+AGG | 0.623901 | 3_1:-19113055 | Msa0351760:intron |
| AGTCAAGCCTGAGTAATCAC+CGG | 0.627145 | 3_1:+19110783 | None:intergenic |
| TCTGCCAAACCCGAAAAGCA+AGG | 0.628364 | 3_1:+19110973 | None:intergenic |
| CAAGTACTAGTCAAATTGGA+GGG | 0.629681 | 3_1:-19113288 | Msa0351760:CDS |
| AAGCACAGCTGCAACTAAGA+CGG | 0.631279 | 3_1:+19111650 | None:intergenic |
| ACCACCTTTGACAATTCACA+AGG | 0.633543 | 3_1:+19110388 | None:intergenic |
| GTGGCTTTAATGATCATGCA+AGG | 0.634484 | 3_1:-19110538 | Msa0351760:three_prime_UTR |
| TAGAGTGGTTTAGCCACCAT+AGG | 0.639848 | 3_1:+19113121 | None:intergenic |
| GCGCCTATCAGGTTTCTCAT+CGG | 0.641117 | 3_1:+19111090 | None:intergenic |
| TGATTACTCAGGCTTGACTG+TGG | 0.648155 | 3_1:-19110779 | Msa0351760:CDS |
| AAAGGGAATGGGAATCGCAA+AGG | 0.648256 | 3_1:-19110585 | Msa0351760:CDS |
| GTTGCCTAAGATTCCACCTG+CGG | 0.660068 | 3_1:+19111515 | None:intergenic |
| TGAAGATACAAGTAAAACAC+CGG | 0.663374 | 3_1:+19110267 | None:intergenic |
| TAAGCACTTCACGTGCAGCA+GGG | 0.666791 | 3_1:+19111673 | None:intergenic |
| TGAAAATTAAGAGCAAGCCA+AGG | 0.671783 | 3_1:+19113208 | None:intergenic |
| GGATGTAATGCCGAGCAAAG+AGG | 0.684382 | 3_1:+19110804 | None:intergenic |
| CAACTCGTGTGAGCTAACAA+TGG | 0.700698 | 3_1:+19110475 | None:intergenic |
| ATATTGTAGACAGTTCTACG+AGG | 0.797859 | 3_1:+19113833 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAATAAAGGAAAAATA+GGG | + | chr3_1:19110356-19110375 | None:intergenic | 15.0% |
| !! | AAGAATAATAAAGGAAAAAT+AGG | + | chr3_1:19110357-19110376 | None:intergenic | 15.0% |
| !!! | CATTGATTTCTTTTATAAAT+AGG | - | chr3_1:19111415-19111434 | Msa0351760:CDS | 15.0% |
| !!! | GATTTTATTATCATCAATTT+TGG | - | chr3_1:19111508-19111527 | Msa0351760:CDS | 15.0% |
| !! | TAAAACCTTTATATTACATT+AGG | - | chr3_1:19111832-19111851 | Msa0351760:intron | 15.0% |
| !! | AAAACCTTTATATTACATTA+GGG | - | chr3_1:19111833-19111852 | Msa0351760:intron | 15.0% |
| !!! | TTTTAAGTTATTTTGTGTTT+AGG | - | chr3_1:19111923-19111942 | Msa0351760:intron | 15.0% |
| !! | ACAAATATCAAGTTAAATAA+AGG | + | chr3_1:19112160-19112179 | None:intergenic | 15.0% |
| !! | TGTGTAAGTTTAAAAATTGA+GGG | + | chr3_1:19110199-19110218 | None:intergenic | 20.0% |
| !! | GAGATAGAAAAGAATAATAA+AGG | + | chr3_1:19110366-19110385 | None:intergenic | 20.0% |
| !! | ATTTAACACATTAACAGAAA+AGG | + | chr3_1:19110983-19111002 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | + | chr3_1:19111085-19111104 | None:intergenic | 20.0% |
| !!! | AATTGAATATCTCATTTTAG+TGG | - | chr3_1:19111462-19111481 | Msa0351760:CDS | 20.0% |
| !!! | ATGTAATATAAAGGTTTTAG+AGG | + | chr3_1:19111831-19111850 | None:intergenic | 20.0% |
| !! | GTTATGAATAAAATTTACCT+TGG | - | chr3_1:19112053-19112072 | Msa0351760:intron | 20.0% |
| !!! | GTAATATTTTTATTCAACCA+AGG | + | chr3_1:19112073-19112092 | None:intergenic | 20.0% |
| !!! | CCAAATAAGTTTCATTTTAT+GGG | + | chr3_1:19112240-19112259 | None:intergenic | 20.0% |
| !!! | ACCAAATAAGTTTCATTTTA+TGG | + | chr3_1:19112241-19112260 | None:intergenic | 20.0% |
| !! | AGACAGATAAATCTTAAATT+CGG | - | chr3_1:19112967-19112986 | Msa0351760:intron | 20.0% |
| !!! | ATTTTGTTTTTCTCTATGTT+TGG | - | chr3_1:19113554-19113573 | Msa0351760:exon | 20.0% |
| ! | GTGTAAGTTTAAAAATTGAG+GGG | + | chr3_1:19110198-19110217 | None:intergenic | 25.0% |
| ! | GTGTGTAAGTTTAAAAATTG+AGG | + | chr3_1:19110200-19110219 | None:intergenic | 25.0% |
| ! | AATAAAGGAAAAATAGGGTA+TGG | + | chr3_1:19110351-19110370 | None:intergenic | 25.0% |
| ! | TTGTGATGTTTGTGTAAATT+TGG | + | chr3_1:19110492-19110511 | None:intergenic | 25.0% |
| ! | AAACAAATGCTTATATTGTG+TGG | - | chr3_1:19110720-19110739 | Msa0351760:CDS | 25.0% |
| ! | CTTTCTGATGTTATCTATAT+TGG | - | chr3_1:19110894-19110913 | Msa0351760:CDS | 25.0% |
| ! | TGATATTGAGATGTAGATAT+TGG | - | chr3_1:19111181-19111200 | Msa0351760:CDS | 25.0% |
| ! | TAGGAAATTGAGAAAATCAA+AGG | - | chr3_1:19111341-19111360 | Msa0351760:CDS | 25.0% |
| ! | TATTCATAACGAAATTGATC+TGG | + | chr3_1:19112043-19112062 | None:intergenic | 25.0% |
| ! | GTGTATTATAAGATTTCAAG+AGG | - | chr3_1:19112094-19112113 | Msa0351760:intron | 25.0% |
| ! | AAAAGACATTAAGAAATGCA+AGG | - | chr3_1:19112127-19112146 | Msa0351760:intron | 25.0% |
| ! | CCCATAAAATGAAACTTATT+TGG | - | chr3_1:19112237-19112256 | Msa0351760:intron | 25.0% |
| ! | ATTGATCATGAAATCAAAAG+AGG | - | chr3_1:19113657-19113676 | Msa0351760:five_prime_UTR | 25.0% |
| ! | GATGTATTTATTACATTGAC+CGG | - | chr3_1:19113699-19113718 | Msa0351760:five_prime_UTR | 25.0% |
| ! | GTAGATTGTTAAAATCCAAA+GGG | + | chr3_1:19113788-19113807 | None:intergenic | 25.0% |
| ! | TGTAGATTGTTAAAATCCAA+AGG | + | chr3_1:19113789-19113808 | None:intergenic | 25.0% |
| AATAAAAGAGAGAGAAGAGA+GGG | + | chr3_1:19110233-19110252 | None:intergenic | 30.0% | |
| TATTGGTGAATGAACAATGA+AGG | + | chr3_1:19110291-19110310 | None:intergenic | 30.0% | |
| TGAAATTGCAAGATGAATCA+TGG | + | chr3_1:19110436-19110455 | None:intergenic | 30.0% | |
| TTCATCACAAAAGAATCCAT+TGG | - | chr3_1:19110452-19110471 | Msa0351760:three_prime_UTR | 30.0% | |
| !! | GGTTTGTTAATAATCACCAA+TGG | + | chr3_1:19110471-19110490 | None:intergenic | 30.0% |
| TGTTGTGAACATGTTATGAT+TGG | + | chr3_1:19110519-19110538 | None:intergenic | 30.0% | |
| ATCTCAACAACCTACATTTA+TGG | - | chr3_1:19110572-19110591 | Msa0351760:exon | 30.0% | |
| GAGAGAGAATAAGAAAAAGA+AGG | - | chr3_1:19110620-19110639 | Msa0351760:CDS | 30.0% | |
| GAATAAGAAAAAGAAGGAAG+AGG | - | chr3_1:19110626-19110645 | Msa0351760:CDS | 30.0% | |
| AGAGGAGAATAAGAAGAAAA+AGG | - | chr3_1:19110671-19110690 | Msa0351760:CDS | 30.0% | |
| GAGGAGAATAAGAAGAAAAA+GGG | - | chr3_1:19110672-19110691 | Msa0351760:CDS | 30.0% | |
| ATGCTTATATTGTGTGGATT+TGG | - | chr3_1:19110726-19110745 | Msa0351760:CDS | 30.0% | |
| TGCTTATATTGTGTGGATTT+GGG | - | chr3_1:19110727-19110746 | Msa0351760:CDS | 30.0% | |
| ! | GCTTGCTCTTAATTTTCATA+TGG | - | chr3_1:19110782-19110801 | Msa0351760:CDS | 30.0% |
| TATGGCTAGTAATCTCAATT+TGG | - | chr3_1:19110800-19110819 | Msa0351760:CDS | 30.0% | |
| GTACAAGTTGCAATATTGAA+GGG | + | chr3_1:19110827-19110846 | None:intergenic | 30.0% | |
| TGTACAAGTTGCAATATTGA+AGG | + | chr3_1:19110828-19110847 | None:intergenic | 30.0% | |
| TCTGATGTTATCTATATTGG+TGG | - | chr3_1:19110897-19110916 | Msa0351760:CDS | 30.0% | |
| ACACGATTCAGTGTAAATAT+AGG | - | chr3_1:19111110-19111129 | Msa0351760:CDS | 30.0% | |
| TTCAGTGTAAATATAGGTGT+CGG | - | chr3_1:19111116-19111135 | Msa0351760:CDS | 30.0% | |
| TGAGATGTAGATATTGGTAA+TGG | - | chr3_1:19111187-19111206 | Msa0351760:CDS | 30.0% | |
| ! | ATGTCTTTAATCTGAAGTGT+CGG | - | chr3_1:19111285-19111304 | Msa0351760:CDS | 30.0% |
| TTAGATAGATTAGTAGTCAC+TGG | + | chr3_1:19111643-19111662 | None:intergenic | 30.0% | |
| TTTGATATTGCGACAAAATG+CGG | - | chr3_1:19111763-19111782 | Msa0351760:intron | 30.0% | |
| ACAGCCCTAATGTAATATAA+AGG | + | chr3_1:19111840-19111859 | None:intergenic | 30.0% | |
| ATCCAAACAAAAGGAATTAC+AGG | + | chr3_1:19111890-19111909 | None:intergenic | 30.0% | |
| TAACATGTGGTATGTTCAAT+TGG | - | chr3_1:19111973-19111992 | Msa0351760:intron | 30.0% | |
| !!! | TTTTTTTGCAGATCTTTGCT+TGG | - | chr3_1:19112272-19112291 | Msa0351760:intron | 30.0% |
| TATGGGAAGAAACACAAAAT+TGG | - | chr3_1:19112415-19112434 | Msa0351760:intron | 30.0% | |
| AATATCATGAACACGATTCT+TGG | + | chr3_1:19112529-19112548 | None:intergenic | 30.0% | |
| AATTTCTTTCTCAACAAGAG+AGG | - | chr3_1:19112576-19112595 | Msa0351760:intron | 30.0% | |
| !!! | TTTTTTGATAGTTTCCGAGA+TGG | + | chr3_1:19112650-19112669 | None:intergenic | 30.0% |
| AACTATCAAAAAACAAGCGT+CGG | - | chr3_1:19112657-19112676 | Msa0351760:intron | 30.0% | |
| !! | GTATTTCTTACCCACTTTTA+TGG | - | chr3_1:19112707-19112726 | Msa0351760:intron | 30.0% |
| AATCTTGATCCTATGATCAT+CGG | - | chr3_1:19112799-19112818 | Msa0351760:intron | 30.0% | |
| ! | CCAATATCGGTTATAAAGTA+CGG | + | chr3_1:19112866-19112885 | None:intergenic | 30.0% |
| !! | TCGGAAACTTTTTCCAATAT+CGG | + | chr3_1:19112879-19112898 | None:intergenic | 30.0% |
| !! | GTTACTTCTTGATCTTGTTT+TGG | - | chr3_1:19112942-19112961 | Msa0351760:intron | 30.0% |
| TAAATTCGGAATTCCAAATG+AGG | - | chr3_1:19112981-19113000 | Msa0351760:intron | 30.0% | |
| ATCCTATCATCAATAGTTAG+TGG | - | chr3_1:19113138-19113157 | Msa0351760:CDS | 30.0% | |
| !!! | TCAATAGTTAGTGGCTTTTT+TGG | - | chr3_1:19113147-19113166 | Msa0351760:CDS | 30.0% |
| !! | TTACTACCTTTAAGATGGAT+TGG | - | chr3_1:19113255-19113274 | Msa0351760:CDS | 30.0% |
| ! | TTGGTTCGATTAATGCATAT+AGG | - | chr3_1:19113373-19113392 | Msa0351760:CDS | 30.0% |
| ATGATCAATTCTTACCTTTG+TGG | - | chr3_1:19113428-19113447 | Msa0351760:CDS | 30.0% | |
| CTATGTTTGGATTCTTAACA+TGG | - | chr3_1:19113567-19113586 | Msa0351760:exon | 30.0% | |
| ATTTCATGATCAATGTCCTA+AGG | + | chr3_1:19113651-19113670 | None:intergenic | 30.0% | |
| ! | CAAAAGAGGTATGTTTGTAT+AGG | - | chr3_1:19113671-19113690 | Msa0351760:five_prime_UTR | 30.0% |
| TGAAGATACAAGTAAAACAC+CGG | + | chr3_1:19113721-19113740 | None:intergenic | 30.0% | |
| ATAGCTAGAGTACATATCAA+AGG | + | chr3_1:19113823-19113842 | None:intergenic | 30.0% | |
| ! | GATATGTACTCTAGCTATTT+TGG | - | chr3_1:19113825-19113844 | Msa0351760:five_prime_UTR | 30.0% |
| ATATTGTAGACAGTTCTACG+AGG | + | chr3_1:19110155-19110174 | None:intergenic | 35.0% | |
| GAATAAAAGAGAGAGAAGAG+AGG | + | chr3_1:19110234-19110253 | None:intergenic | 35.0% | |
| GATGCACTCATTGTACTTAT+TGG | + | chr3_1:19110308-19110327 | None:intergenic | 35.0% | |
| TGTGTGTCAACCATAAATGT+AGG | + | chr3_1:19110585-19110604 | None:intergenic | 35.0% | |
| GAGTGTGTTTATTGAGAAAG+AGG | - | chr3_1:19110653-19110672 | Msa0351760:CDS | 35.0% | |
| GGTTCAAGTACTAGTCAAAT+TGG | - | chr3_1:19110693-19110712 | Msa0351760:CDS | 35.0% | |
| TCAAGTACTAGTCAAATTGG+AGG | - | chr3_1:19110696-19110715 | Msa0351760:CDS | 35.0% | |
| CAAGTACTAGTCAAATTGGA+GGG | - | chr3_1:19110697-19110716 | Msa0351760:CDS | 35.0% | |
| TATTGTGTGGATTTGGGTAT+TGG | - | chr3_1:19110733-19110752 | Msa0351760:CDS | 35.0% | |
| !! | GATTTGGGTATTGGTTACAA+GGG | - | chr3_1:19110742-19110761 | Msa0351760:CDS | 35.0% |
| TGAAAATTAAGAGCAAGCCA+AGG | + | chr3_1:19110780-19110799 | None:intergenic | 35.0% | |
| GTATTCTGCTAATCTTCCTA+TGG | - | chr3_1:19110848-19110867 | Msa0351760:CDS | 35.0% | |
| TCAGAAAGAATTCCATAGAG+TGG | + | chr3_1:19110882-19110901 | None:intergenic | 35.0% | |
| AGAATCCCTTACATTATCAC+TGG | - | chr3_1:19110927-19110946 | Msa0351760:CDS | 35.0% | |
| ! | TACCTCCAGTGATAATGTAA+GGG | + | chr3_1:19110935-19110954 | None:intergenic | 35.0% |
| ! | ATACCTCCAGTGATAATGTA+AGG | + | chr3_1:19110936-19110955 | None:intergenic | 35.0% |
| GAAAGTGATTGAACGTAAAC+CGG | - | chr3_1:19111226-19111245 | Msa0351760:CDS | 35.0% | |
| TTCCTAACTACTCACTTTAG+AGG | + | chr3_1:19111327-19111346 | None:intergenic | 35.0% | |
| !! | TCACAGCTTGTTACAGATAA+GGG | + | chr3_1:19111542-19111561 | None:intergenic | 35.0% |
| AGGTAACAACTCACAAGAAT+TGG | - | chr3_1:19111561-19111580 | Msa0351760:CDS | 35.0% | |
| CATAATCCATAATGCATGTG+TGG | - | chr3_1:19111693-19111712 | Msa0351760:CDS | 35.0% | |
| TCTTAACCACACATGCATTA+TGG | + | chr3_1:19111702-19111721 | None:intergenic | 35.0% | |
| TAATGCATGTGTGGTTAAGA+TGG | - | chr3_1:19111702-19111721 | Msa0351760:CDS | 35.0% | |
| ! | GACCTGTAATTCCTTTTGTT+TGG | - | chr3_1:19111885-19111904 | Msa0351760:intron | 35.0% |
| ATCAGACTGATCCAAACAAA+AGG | + | chr3_1:19111899-19111918 | None:intergenic | 35.0% | |
| ACTCTTTCCATGTTAACATG+TGG | - | chr3_1:19111960-19111979 | Msa0351760:intron | 35.0% | |
| GAACATACCACATGTTAACA+TGG | + | chr3_1:19111970-19111989 | None:intergenic | 35.0% | |
| AGACATTAAGAAATGCAAGG+TGG | - | chr3_1:19112130-19112149 | Msa0351760:intron | 35.0% | |
| GCAAAGATCTGCAAAAAAAC+TGG | + | chr3_1:19112271-19112290 | None:intergenic | 35.0% | |
| ATCCATTACTGAAGTTGCAA+AGG | - | chr3_1:19112375-19112394 | Msa0351760:intron | 35.0% | |
| ATCCTTTGCAACTTCAGTAA+TGG | + | chr3_1:19112380-19112399 | None:intergenic | 35.0% | |
| TGCTAGTTGTACAGATAGTA+AGG | + | chr3_1:19112557-19112576 | None:intergenic | 35.0% | |
| TCAACAAGAGAGGATTCTTT+AGG | - | chr3_1:19112586-19112605 | Msa0351760:intron | 35.0% | |
| !! | AGATTTAGAGTTGATGGTTG+TGG | + | chr3_1:19112616-19112635 | None:intergenic | 35.0% |
| ! | GTTGCAAGATTTAGAGTTGA+TGG | + | chr3_1:19112622-19112641 | None:intergenic | 35.0% |
| ATCCAACGATCCATAAAAGT+GGG | + | chr3_1:19112720-19112739 | None:intergenic | 35.0% | |
| CTGTGTCTGATAGCAAAATA+TGG | + | chr3_1:19112773-19112792 | None:intergenic | 35.0% | |
| CCGTACTTTATAACCGATAT+TGG | - | chr3_1:19112863-19112882 | Msa0351760:intron | 35.0% | |
| GTTTAAACTCCTTCCTTTCT+CGG | - | chr3_1:19113047-19113066 | Msa0351760:intron | 35.0% | |
| TTCGCAAATTTATGTCCGAA+AGG | - | chr3_1:19113075-19113094 | Msa0351760:CDS | 35.0% | |
| ! | AGCCACTAACTATTGATGAT+AGG | + | chr3_1:19113143-19113162 | None:intergenic | 35.0% |
| ! | CAGCTTTACTACCTTTAAGA+TGG | - | chr3_1:19113250-19113269 | Msa0351760:CDS | 35.0% |
| ATCGAACCAATCCATCTTAA+AGG | + | chr3_1:19113264-19113283 | None:intergenic | 35.0% | |
| AGAGTTGGAAAAGTTGTGAT+TGG | - | chr3_1:19113354-19113373 | Msa0351760:CDS | 35.0% | |
| CATGATCATTAAAGCCACAA+AGG | + | chr3_1:19113445-19113464 | None:intergenic | 35.0% | |
| AATGATCATGCAAGGATGAT+TGG | - | chr3_1:19113455-19113474 | Msa0351760:CDS | 35.0% | |
| ! | ATTGTCAAAGGTGGTTTTTG+AGG | - | chr3_1:19113605-19113624 | Msa0351760:five_prime_UTR | 35.0% |
| AACAAGTGTCTTAACGACAT+TGG | + | chr3_1:19113758-19113777 | None:intergenic | 35.0% | |
| ! | CACTTGTTAATAAGACCCTT+TGG | - | chr3_1:19113770-19113789 | Msa0351760:five_prime_UTR | 35.0% |
| !! | GGATTTGGGTATTGGTTACA+AGG | - | chr3_1:19110741-19110760 | Msa0351760:CDS | 40.0% |
| !! | GGTATTGGTTACAAGGGTTT+AGG | - | chr3_1:19110748-19110767 | Msa0351760:CDS | 40.0% |
| ! | AAGGGTTTAGGTGTTTTCCT+TGG | - | chr3_1:19110760-19110779 | Msa0351760:CDS | 40.0% |
| TTCTGCTAATCTTCCTATGG+TGG | - | chr3_1:19110851-19110870 | Msa0351760:CDS | 40.0% | |
| ATCCCTTACATTATCACTGG+AGG | - | chr3_1:19110930-19110949 | Msa0351760:CDS | 40.0% | |
| AGAAAAGGCAAAAGCTACGT+GGG | + | chr3_1:19110968-19110987 | None:intergenic | 40.0% | |
| AATGAAACACAGACACTCCT+CGG | + | chr3_1:19111157-19111176 | None:intergenic | 40.0% | |
| !! | AGCCTCTAAAGTGAGTAGTT+AGG | - | chr3_1:19111322-19111341 | Msa0351760:CDS | 40.0% |
| !! | CTCACAGCTTGTTACAGATA+AGG | + | chr3_1:19111543-19111562 | None:intergenic | 40.0% |
| CTTATCTGTAACAAGCTGTG+AGG | - | chr3_1:19111541-19111560 | Msa0351760:CDS | 40.0% | |
| !! | ATGGTTCTAATTTGCAGCCA+CGG | - | chr3_1:19111721-19111740 | Msa0351760:intron | 40.0% |
| AACTGCAATTACGGCTGTAT+TGG | + | chr3_1:19111790-19111809 | None:intergenic | 40.0% | |
| TGGCACAACAACTGCAATTA+CGG | + | chr3_1:19111799-19111818 | None:intergenic | 40.0% | |
| CTGAAGTAGGTTATCAGTTG+CGG | + | chr3_1:19111866-19111885 | None:intergenic | 40.0% | |
| ! | AGGAATTACAGGTCTGAAGT+AGG | + | chr3_1:19111879-19111898 | None:intergenic | 40.0% |
| ATGCTCTTGTAGCTGAGTAT+GGG | - | chr3_1:19112398-19112417 | Msa0351760:intron | 40.0% | |
| GGGAAGAAACACAAAATTGG+CGG | - | chr3_1:19112418-19112437 | Msa0351760:intron | 40.0% | |
| GGAATCTTAGGCAACTTGAT+CGG | - | chr3_1:19112478-19112497 | Msa0351760:intron | 40.0% | |
| ATCATGAACACGATTCTTGG+AGG | + | chr3_1:19112526-19112545 | None:intergenic | 40.0% | |
| TCTTGCAACACAATCCATCT+CGG | - | chr3_1:19112633-19112652 | Msa0351760:intron | 40.0% | |
| !! | TACCCACTTTTATGGATCGT+TGG | - | chr3_1:19112715-19112734 | Msa0351760:intron | 40.0% |
| GATCCAACGATCCATAAAAG+TGG | + | chr3_1:19112721-19112740 | None:intergenic | 40.0% | |
| TTGATCCTATGATCATCGGT+TGG | - | chr3_1:19112803-19112822 | Msa0351760:intron | 40.0% | |
| TTTCCGATGAGAAACCTGAT+AGG | - | chr3_1:19112892-19112911 | Msa0351760:intron | 40.0% | |
| ATAGGATCAAAGCTGATGCA+AGG | + | chr3_1:19113125-19113144 | None:intergenic | 40.0% | |
| !!! | GTTAGTGGCTTTTTTGGTGT+TGG | - | chr3_1:19113153-19113172 | Msa0351760:CDS | 40.0% |
| !!! | TGGCTTTTTTGGTGTTGGAT+TGG | - | chr3_1:19113158-19113177 | Msa0351760:CDS | 40.0% |
| ATTACATCCGGTGATTACTC+AGG | - | chr3_1:19113195-19113214 | Msa0351760:CDS | 40.0% | |
| ACCTATGTCACAGTCTGATT+CGG | - | chr3_1:19113284-19113303 | Msa0351760:CDS | 40.0% | |
| TTAATGCATATAGGCGCGAA+AGG | - | chr3_1:19113382-19113401 | Msa0351760:CDS | 40.0% | |
| TAATGCATATAGGCGCGAAA+GGG | - | chr3_1:19113383-19113402 | Msa0351760:CDS | 40.0% | |
| !! | GTGGCTTTAATGATCATGCA+AGG | - | chr3_1:19113447-19113466 | Msa0351760:CDS | 40.0% |
| TGTGAGCTAACAATGGCATA+AGG | + | chr3_1:19113506-19113525 | None:intergenic | 40.0% | |
| !! | AAAATCCTACGCTTTGAAGC+AGG | + | chr3_1:19113539-19113558 | None:intergenic | 40.0% |
| CTTTGACAATTCACAAGGTG+TGG | + | chr3_1:19113595-19113614 | None:intergenic | 40.0% | |
| CACACCTTGTGAATTGTCAA+AGG | - | chr3_1:19113593-19113612 | Msa0351760:five_prime_UTR | 40.0% | |
| ACCTTGTGAATTGTCAAAGG+TGG | - | chr3_1:19113596-19113615 | Msa0351760:five_prime_UTR | 40.0% | |
| ACCACCTTTGACAATTCACA+AGG | + | chr3_1:19113600-19113619 | None:intergenic | 40.0% | |
| GAATGCTAACATGTGTCCTT+AGG | - | chr3_1:19113632-19113651 | Msa0351760:five_prime_UTR | 40.0% | |
| AAGTGTCTTAACGACATTGG+AGG | + | chr3_1:19113755-19113774 | None:intergenic | 40.0% | |
| TAGACAGTTCTACGAGGTTG+TGG | + | chr3_1:19110149-19110168 | None:intergenic | 45.0% | |
| TAGAGTGGTTTAGCCACCAT+AGG | + | chr3_1:19110867-19110886 | None:intergenic | 45.0% | |
| ATGGTGGCTAAACCACTCTA+TGG | - | chr3_1:19110867-19110886 | Msa0351760:CDS | 45.0% | |
| GAAAAGGCAAAAGCTACGTG+GGG | + | chr3_1:19110967-19110986 | None:intergenic | 45.0% | |
| CAGAAAAGGCAAAAGCTACG+TGG | + | chr3_1:19110969-19110988 | None:intergenic | 45.0% | |
| GATGAAGCACGTATACGACA+TGG | - | chr3_1:19111048-19111067 | Msa0351760:CDS | 45.0% | |
| AAACCGGTAACCACATGTGT+TGG | - | chr3_1:19111242-19111261 | Msa0351760:CDS | 45.0% | |
| ACACCAACACATGTGGTTAC+CGG | + | chr3_1:19111248-19111267 | None:intergenic | 45.0% | |
| TGACACAACACCAACACATG+TGG | + | chr3_1:19111255-19111274 | None:intergenic | 45.0% | |
| !! | TAGTAGTCACTGGCTTTGCT+TGG | + | chr3_1:19111633-19111652 | None:intergenic | 45.0% |
| !!! | GGTTTTAGAGGTCACTACGA+TGG | + | chr3_1:19111819-19111838 | None:intergenic | 45.0% |
| AAGCACAGCTGCAACTAAGA+CGG | + | chr3_1:19112338-19112357 | None:intergenic | 45.0% | |
| AGCTGTGCTTCTCAGTAACT+TGG | - | chr3_1:19112348-19112367 | Msa0351760:intron | 45.0% | |
| GCTGTGCTTCTCAGTAACTT+GGG | - | chr3_1:19112349-19112368 | Msa0351760:intron | 45.0% | |
| GATGCTCTTGTAGCTGAGTA+TGG | - | chr3_1:19112397-19112416 | Msa0351760:intron | 45.0% | |
| CCATGAACGCGTATGATTGT+AGG | + | chr3_1:19112444-19112463 | None:intergenic | 45.0% | |
| CCTACAATCATACGCGTTCA+TGG | - | chr3_1:19112441-19112460 | Msa0351760:intron | 45.0% | |
| ATCTTAGGCAACTTGATCGG+TGG | - | chr3_1:19112481-19112500 | Msa0351760:intron | 45.0% | |
| !!! | ACAAGCGTCGGATCTTTTTG+TGG | - | chr3_1:19112669-19112688 | Msa0351760:intron | 45.0% |
| TGCCACTGTTCCAATGCTTA+CGG | - | chr3_1:19112744-19112763 | Msa0351760:intron | 45.0% | |
| AATATGGAGCCCGTAAGCAT+TGG | + | chr3_1:19112757-19112776 | None:intergenic | 45.0% | |
| CTAGACCAACCGATGATCAT+AGG | + | chr3_1:19112811-19112830 | None:intergenic | 45.0% | |
| !! | ATCGGTTGGTCTAGAGTGAT+TGG | - | chr3_1:19112817-19112836 | Msa0351760:intron | 45.0% |
| ! | GGTCAGTTGATGCTTCTTTC+AGG | - | chr3_1:19112838-19112857 | Msa0351760:intron | 45.0% |
| GAAGTAACGACGAAGCGTAT+AGG | + | chr3_1:19112930-19112949 | None:intergenic | 45.0% | |
| TTTGCGAACAGAACCGAGAA+AGG | + | chr3_1:19113063-19113082 | None:intergenic | 45.0% | |
| TCTTTGCTCGGCATTACATC+CGG | - | chr3_1:19113183-19113202 | Msa0351760:CDS | 45.0% | |
| AGTCAAGCCTGAGTAATCAC+CGG | + | chr3_1:19113205-19113224 | None:intergenic | 45.0% | |
| TGATTACTCAGGCTTGACTG+TGG | - | chr3_1:19113206-19113225 | Msa0351760:CDS | 45.0% | |
| GATTACTCAGGCTTGACTGT+GGG | - | chr3_1:19113207-19113226 | Msa0351760:CDS | 45.0% | |
| TCCGAATCAGACTGTGACAT+AGG | + | chr3_1:19113288-19113307 | None:intergenic | 45.0% | |
| ATATAGGCGCGAAAGGGAAT+GGG | - | chr3_1:19113389-19113408 | Msa0351760:CDS | 45.0% | |
| AAAGGGAATGGGAATCGCAA+AGG | - | chr3_1:19113400-19113419 | Msa0351760:CDS | 45.0% | |
| CAACTCGTGTGAGCTAACAA+TGG | + | chr3_1:19113513-19113532 | None:intergenic | 45.0% | |
| !! | GTCAAAGGTGGTTTTTGAGG+AGG | - | chr3_1:19113608-19113627 | Msa0351760:five_prime_UTR | 45.0% |
| !! | ATATAGGTGTCGGTGTCGTG+TGG | - | chr3_1:19111126-19111145 | Msa0351760:CDS | 50.0% |
| ! | CTAATTTGCAGCCACGGTTG+CGG | - | chr3_1:19111727-19111746 | Msa0351760:intron | 50.0% |
| TAAGCACTTCACGTGCAGCA+GGG | + | chr3_1:19112315-19112334 | None:intergenic | 50.0% | |
| TTAGCCGCAGGTGGAATCTT+AGG | - | chr3_1:19112466-19112485 | Msa0351760:intron | 50.0% | |
| GTTGCCTAAGATTCCACCTG+CGG | + | chr3_1:19112473-19112492 | None:intergenic | 50.0% | |
| GCCACTGTTCCAATGCTTAC+GGG | - | chr3_1:19112745-19112764 | Msa0351760:intron | 50.0% | |
| GCGCCTATCAGGTTTCTCAT+CGG | + | chr3_1:19112898-19112917 | None:intergenic | 50.0% | |
| CAAGGAGCGAACACCTCATT+TGG | + | chr3_1:19112997-19113016 | None:intergenic | 50.0% | |
| !! | GGTGTTCGCTCCTTGCTTTT+CGG | - | chr3_1:19113002-19113021 | Msa0351760:intron | 50.0% |
| !! | GTGTTCGCTCCTTGCTTTTC+GGG | - | chr3_1:19113003-19113022 | Msa0351760:intron | 50.0% |
| TCTGCCAAACCCGAAAAGCA+AGG | + | chr3_1:19113015-19113034 | None:intergenic | 50.0% | |
| CGAACAGAACCGAGAAAGGA+AGG | + | chr3_1:19113059-19113078 | None:intergenic | 50.0% | |
| TTATGTCCGAAAGGCTGCGA+AGG | - | chr3_1:19113084-19113103 | Msa0351760:CDS | 50.0% | |
| AGAGATCCTTCGCAGCCTTT+CGG | + | chr3_1:19113093-19113112 | None:intergenic | 50.0% | |
| !! | GTTGGATTGGCCTCTTTGCT+CGG | - | chr3_1:19113171-19113190 | Msa0351760:CDS | 50.0% |
| GGATGTAATGCCGAGCAAAG+AGG | + | chr3_1:19113184-19113203 | None:intergenic | 50.0% | |
| GCGCGTAGAAACAGAAGAGT+TGG | - | chr3_1:19113339-19113358 | Msa0351760:CDS | 50.0% | |
| CATATAGGCGCGAAAGGGAA+TGG | - | chr3_1:19113388-19113407 | Msa0351760:CDS | 50.0% | |
| !! | ATCCTACGCTTTGAAGCAGG+AGG | + | chr3_1:19113536-19113555 | None:intergenic | 50.0% |
| TTCTACGAGGTTGTGGCGAG+TGG | + | chr3_1:19110142-19110161 | None:intergenic | 55.0% | |
| TTGCAGCATAACCGCAACCG+TGG | + | chr3_1:19111741-19111760 | None:intergenic | 55.0% | |
| GTAAGCACTTCACGTGCAGC+AGG | + | chr3_1:19112316-19112335 | None:intergenic | 55.0% | |
| TTCATGGCATTAGCCGCAGG+TGG | - | chr3_1:19112457-19112476 | Msa0351760:intron | 55.0% | |
| !! | GCCCGTAAGCATTGGAACAG+TGG | + | chr3_1:19112749-19112768 | None:intergenic | 55.0% |
| !!! | CGCTCCTTGCTTTTCGGGTT+TGG | - | chr3_1:19113008-19113027 | Msa0351760:intron | 55.0% |
| TGCCTCCTGCTTCAAAGCGT+AGG | - | chr3_1:19113531-19113550 | Msa0351760:CDS | 55.0% | |
| ! | GGTGTCGTGTGGCTAATCCG+AGG | - | chr3_1:19111137-19111156 | Msa0351760:CDS | 60.0% |
| GCGTTCATGGCATTAGCCGC+AGG | - | chr3_1:19112454-19112473 | Msa0351760:intron | 60.0% | |
| GGATCTGCACTGCGCCTATC+AGG | + | chr3_1:19112909-19112928 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 19110132 | 19113875 | 19110132 | ID=Msa0351760;Name=Msa0351760 |
| chr3_1 | mRNA | 19110132 | 19113875 | 19110132 | ID=Msa0351760-mRNA-1;Parent=Msa0351760;Name=Msa0351760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=303|1|1|1|1|1|2|450|556 |
| chr3_1 | exon | 19110132 | 19111735 | 19110132 | ID=Msa0351760-mRNA-1:exon:4485;Parent=Msa0351760-mRNA-1 |
| chr3_1 | exon | 19113056 | 19113875 | 19113056 | ID=Msa0351760-mRNA-1:exon:4484;Parent=Msa0351760-mRNA-1 |
| chr3_1 | five_prime_UTR | 19113573 | 19113875 | 19113573 | ID=Msa0351760-mRNA-1:five_prime_utr;Parent=Msa0351760-mRNA-1 |
| chr3_1 | CDS | 19113056 | 19113572 | 19113056 | ID=Msa0351760-mRNA-1:cds;Parent=Msa0351760-mRNA-1 |
| chr3_1 | CDS | 19110582 | 19111735 | 19110582 | ID=Msa0351760-mRNA-1:cds;Parent=Msa0351760-mRNA-1 |
| chr3_1 | three_prime_UTR | 19110132 | 19110581 | 19110132 | ID=Msa0351760-mRNA-1:three_prime_utr;Parent=Msa0351760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
