Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441610 | XP_003598209.1 | 96.959 | 559 | 16 | 1 | 1 | 558 | 1 | 559 | 0.0 | 1105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441610 | sp|O22780|FBT9_ARATH | 56.307 | 547 | 223 | 5 | 11 | 553 | 3 | 537 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441610 | G7IVP1 | 96.959 | 559 | 16 | 1 | 1 | 558 | 1 | 559 | 0.0 | 1105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0441610 | Msa0489110 | 0.881595 | 2.106996e-70 | -8.615850e-47 |
| Msa0441610 | Msa1033230 | 0.814823 | 1.266189e-51 | -8.615850e-47 |
| Msa0441610 | Msa1409050 | 0.810239 | 1.272575e-50 | -8.615850e-47 |
| Msa0264340 | Msa0441610 | 0.808386 | 3.177155e-50 | -8.615850e-47 |
| Msa0351760 | Msa0441610 | 0.913249 | 7.658016e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441610 | MtrunA17_Chr3g0079271 | 96.959 | 559 | 16 | 1 | 1 | 558 | 1 | 559 | 0.0 | 1105 |
| Msa0441610 | MtrunA17_Chr2g0293351 | 45.786 | 439 | 215 | 5 | 98 | 525 | 21 | 447 | 3.81e-123 | 369 |
| Msa0441610 | MtrunA17_Chr2g0293371 | 41.504 | 359 | 189 | 4 | 176 | 523 | 9 | 357 | 9.18e-81 | 257 |
| Msa0441610 | MtrunA17_Chr3g0098661 | 32.000 | 475 | 265 | 5 | 97 | 513 | 13 | 487 | 1.25e-64 | 219 |
| Msa0441610 | MtrunA17_Chr2g0293361 | 43.182 | 264 | 139 | 2 | 263 | 526 | 1 | 253 | 3.21e-64 | 210 |
| Msa0441610 | MtrunA17_Chr1g0205221 | 29.545 | 396 | 267 | 5 | 108 | 497 | 120 | 509 | 3.17e-36 | 142 |
| Msa0441610 | MtrunA17_Chr1g0150001 | 28.148 | 405 | 271 | 7 | 123 | 519 | 75 | 467 | 1.32e-33 | 134 |
| Msa0441610 | MtrunA17_Chr1g0150031 | 29.299 | 157 | 111 | 0 | 357 | 513 | 5 | 161 | 1.60e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441610 | AT2G33280.1 | 56.307 | 547 | 223 | 5 | 11 | 553 | 3 | 537 | 0.0 | 570 |
| Msa0441610 | AT1G04570.1 | 55.814 | 559 | 225 | 6 | 1 | 558 | 5 | 542 | 1.04e-180 | 520 |
| Msa0441610 | AT2G33280.3 | 62.704 | 429 | 160 | 0 | 125 | 553 | 1 | 429 | 4.72e-180 | 514 |
| Msa0441610 | AT2G33280.2 | 61.127 | 355 | 138 | 0 | 199 | 553 | 1 | 355 | 9.58e-142 | 414 |
| Msa0441610 | AT1G04570.2 | 60.836 | 383 | 145 | 2 | 177 | 558 | 16 | 394 | 3.89e-130 | 385 |
| Msa0441610 | AT1G64890.1 | 42.152 | 446 | 239 | 4 | 88 | 521 | 2 | 440 | 1.22e-99 | 309 |
| Msa0441610 | AT5G54860.1 | 32.696 | 471 | 262 | 6 | 97 | 513 | 13 | 482 | 7.19e-66 | 222 |
| Msa0441610 | AT2G32040.1 | 25.388 | 516 | 338 | 11 | 19 | 497 | 20 | 525 | 4.09e-35 | 139 |
| Msa0441610 | AT2G32040.2 | 28.463 | 397 | 272 | 6 | 108 | 497 | 3 | 394 | 1.04e-32 | 130 |
| Msa0441610 | AT5G25050.1 | 24.178 | 426 | 301 | 7 | 119 | 535 | 66 | 478 | 6.82e-28 | 117 |
| Msa0441610 | AT1G79710.2 | 22.877 | 424 | 313 | 5 | 122 | 540 | 73 | 487 | 3.74e-24 | 106 |
| Msa0441610 | AT1G79710.1 | 22.877 | 424 | 313 | 5 | 122 | 540 | 73 | 487 | 3.74e-24 | 106 |
| Msa0441610 | AT5G25040.2 | 24.628 | 471 | 304 | 12 | 105 | 541 | 58 | 511 | 7.09e-24 | 105 |
| Msa0441610 | AT5G10820.1 | 26.718 | 393 | 245 | 11 | 145 | 516 | 104 | 474 | 2.97e-23 | 103 |
| Msa0441610 | AT5G25040.4 | 24.612 | 451 | 304 | 11 | 105 | 541 | 58 | 486 | 4.29e-23 | 103 |
| Msa0441610 | AT1G79710.3 | 23.054 | 334 | 243 | 5 | 122 | 450 | 73 | 397 | 1.47e-18 | 88.6 |
| Msa0441610 | AT5G25040.1 | 25.886 | 367 | 240 | 10 | 105 | 461 | 58 | 402 | 1.91e-18 | 88.6 |
| Msa0441610 | AT5G25040.5 | 27.513 | 189 | 133 | 1 | 357 | 541 | 151 | 339 | 1.70e-15 | 78.6 |
| Msa0441610 | AT5G25040.3 | 26.074 | 326 | 209 | 10 | 105 | 420 | 58 | 361 | 8.24e-14 | 73.9 |
Find 147 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAACAACCTACATTTA+TGG | 0.130903 | 3_3:-10034015 | Msa0441610:CDS |
| TATGGCTAGTAATCTTAATT+TGG | 0.179816 | 3_3:-10033781 | Msa0441610:CDS |
| GATATGTACTCTAGTTATTT+TGG | 0.182824 | 3_3:-10030564 | Msa0441610:three_prime_UTR |
| CTTTCTGATGTTATCTATAT+TGG | 0.193250 | 3_3:-10033687 | Msa0441610:CDS |
| GGTCAGTTGATGCTTCTTTC+AGG | 0.200974 | 3_3:-10031551 | Msa0441610:CDS |
| TATTGTGTGGATTTGGTTAT+TGG | 0.223114 | 3_3:-10033848 | Msa0441610:CDS |
| TTGTGATGTTTGTGTAAATT+TGG | 0.237519 | 3_3:+10034098 | None:intergenic |
| CCGTACTTTATAACCGATAT+TGG | 0.258220 | 3_3:-10031526 | Msa0441610:CDS |
| GATGCACTCATTGTAGTTAT+TGG | 0.262461 | 3_3:+10034281 | None:intergenic |
| GATGCTCTTGTAGCTGAGTA+TGG | 0.275436 | 3_3:-10031992 | Msa0441610:CDS |
| AGTTCAAGTACTAGTCAAAT+TGG | 0.280786 | 3_3:-10033888 | Msa0441610:CDS |
| GTTACTTCTTGATCTTGTTT+TGG | 0.301857 | 3_3:-10031447 | Msa0441610:CDS |
| GTTTAAACTCCTTCCTTTCT+CGG | 0.304522 | 3_3:-10031342 | Msa0441610:CDS |
| GGATCTGCACTGCGCCTATC+AGG | 0.329497 | 3_3:+10031483 | None:intergenic |
| CAAGGAGCGAACACCTCATT+TGG | 0.337799 | 3_3:+10031395 | None:intergenic |
| ATTGAACCGATCCATCTTAA+AGG | 0.346598 | 3_3:+10031128 | None:intergenic |
| GCCACTGTTCCAATGCTTAC+GGG | 0.347306 | 3_3:-10031644 | Msa0441610:CDS |
| TCAACAAGAGAGGATTCTTT+AGG | 0.351653 | 3_3:-10031803 | Msa0441610:CDS |
| ATGCTTATATTGTGTGGATT+TGG | 0.352009 | 3_3:-10033855 | Msa0441610:CDS |
| ATATTTGAGATCAGTTGATA+TGG | 0.353975 | 3_3:+10030525 | None:intergenic |
| GTTGCAAGATTTAGAGTTGA+TGG | 0.359251 | 3_3:+10031770 | None:intergenic |
| CCATGAACGCGTATGATTGT+AGG | 0.365663 | 3_3:+10031948 | None:intergenic |
| ATCCTATCATCAATAGTTAG+TGG | 0.367560 | 3_3:-10031251 | Msa0441610:CDS |
| AATGATCATTCAAGGATGAT+TGG | 0.370876 | 3_3:-10030934 | Msa0441610:three_prime_UTR |
| CTGTGTCTGATAGCAAAATA+TGG | 0.376189 | 3_3:+10031619 | None:intergenic |
| AGACAGATAAATCTTAAATT+CGG | 0.377256 | 3_3:-10031422 | Msa0441610:CDS |
| CAAAAGAGGTATGTTTGTAT+AGG | 0.380117 | 3_3:-10030718 | Msa0441610:three_prime_UTR |
| TATGGGAAGAAACACAAAAT+TGG | 0.382333 | 3_3:-10031974 | Msa0441610:CDS |
| CCTACAATCATACGCGTTCA+TGG | 0.384503 | 3_3:-10031948 | Msa0441610:CDS |
| AATATCATGAACATGATTCT+TGG | 0.386591 | 3_3:+10031863 | None:intergenic |
| GAGATAGAAAAGAATAATAA+AGG | 0.401596 | 3_3:+10034223 | None:intergenic |
| CAGCTTTACTACCTTTAAGA+TGG | 0.403194 | 3_3:-10031139 | Msa0441610:CDS |
| AGCTGTGCTTCTCAGTAACT+TGG | 0.405069 | 3_3:-10032041 | Msa0441610:CDS |
| GTAGCTTTAATGATCATTCA+AGG | 0.408360 | 3_3:-10030942 | Msa0441610:three_prime_UTR |
| TGCCACTGTTCCAATGCTTA+CGG | 0.411546 | 3_3:-10031645 | Msa0441610:CDS |
| AGAGATCCTTCACAGCCTTT+CGG | 0.425140 | 3_3:+10031299 | None:intergenic |
| CTATGTTTGGATTCTTAACA+TGG | 0.425424 | 3_3:-10030822 | Msa0441610:three_prime_UTR |
| GGATTTGGTTATTGGTTACA+AGG | 0.433989 | 3_3:-10033840 | Msa0441610:CDS |
| AGAAGAGAATAAGAAGAAGA+AGG | 0.436197 | 3_3:-10033916 | Msa0441610:CDS |
| CTAGACCAACCGATGATCAT+AGG | 0.439316 | 3_3:+10031581 | None:intergenic |
| GAAGAGAATAAGAAGAAGAA+GGG | 0.442144 | 3_3:-10033915 | Msa0441610:CDS |
| CCAATATCGGTTATAAAGTA+CGG | 0.443188 | 3_3:+10031526 | None:intergenic |
| TGAAATTGCAAGATTAATCA+TGG | 0.443746 | 3_3:+10034154 | None:intergenic |
| TTAGCCGCAGGTGGAATCTT+AGG | 0.445298 | 3_3:-10031923 | Msa0441610:CDS |
| AGAGTTGGAAAAGTCGTGAT+TGG | 0.449734 | 3_3:-10031035 | Msa0441610:CDS |
| GAAGTAACGACGAAGCGTAT+AGG | 0.450700 | 3_3:+10031462 | None:intergenic |
| CACTTGTTAATAAGACCCTT+TGG | 0.450718 | 3_3:-10030619 | Msa0441610:three_prime_UTR |
| ATACCTCCAGTGATAATGTA+AGG | 0.452475 | 3_3:+10033648 | None:intergenic |
| CATATAGGCGCGAAAGGGAA+TGG | 0.456974 | 3_3:-10031001 | Msa0441610:CDS |
| TGCTAGTTGTACAGATAGTA+AGG | 0.458544 | 3_3:+10031835 | None:intergenic |
| TCTGATGTTATCTATATTGG+TGG | 0.463711 | 3_3:-10033684 | Msa0441610:CDS |
| GATGTATTTATTACATTGAC+CGG | 0.471791 | 3_3:-10030690 | Msa0441610:three_prime_UTR |
| TCTGAATCAGACTGTGACAT+AGG | 0.479357 | 3_3:+10031104 | None:intergenic |
| ATCGGTTGGTCTAGAGTGAT+TGG | 0.481020 | 3_3:-10031572 | Msa0441610:CDS |
| GAATGCTAACACGTGTCCTT+AGG | 0.482139 | 3_3:-10030757 | Msa0441610:three_prime_UTR |
| TCTTTGCTCGGCATTACATC+CGG | 0.488077 | 3_3:-10031206 | Msa0441610:CDS |
| AGCCACTAACTATTGATGAT+AGG | 0.489495 | 3_3:+10031249 | None:intergenic |
| ATGGTGGCTAAACCACTCTA+TGG | 0.489848 | 3_3:-10033714 | Msa0441610:CDS |
| GTATTCTGCTAATCTTCCTA+TGG | 0.490689 | 3_3:-10033733 | Msa0441610:CDS |
| TGTTGTGAACATGTTATGAT+TGG | 0.491516 | 3_3:+10034071 | None:intergenic |
| GTAAGCACTTCACGTGCAGC+AGG | 0.495854 | 3_3:+10032076 | None:intergenic |
| GTTGGATTGGCCTCTTTGCT+CGG | 0.508973 | 3_3:-10031218 | Msa0441610:CDS |
| ATTTCATGATCAATGTCCTA+AGG | 0.509696 | 3_3:+10030741 | None:intergenic |
| GATCCAATGATCCATAAAAG+TGG | 0.514026 | 3_3:+10031671 | None:intergenic |
| ATCCTTTGCAACTTCAGTAA+TGG | 0.515704 | 3_3:+10032012 | None:intergenic |
| AGATTTAGAGTTGATGGTTG+TGG | 0.516019 | 3_3:+10031776 | None:intergenic |
| TAGACAGTTCTACGAGGTTG+TGG | 0.517314 | 3_3:+10034440 | None:intergenic |
| TTCATCACAAAAGAATCCAT+TGG | 0.525638 | 3_3:-10034135 | Msa0441610:CDS |
| AATATGGAGCCCGTAAGCAT+TGG | 0.527587 | 3_3:+10031635 | None:intergenic |
| TAATGCATATAGGCGCGAAA+GGG | 0.528536 | 3_3:-10031006 | Msa0441610:CDS |
| TAAATTCGGAATTCCAAATG+AGG | 0.534129 | 3_3:-10031408 | Msa0441610:CDS |
| AAAATCCTACGCTTTGAAGC+AGG | 0.534347 | 3_3:+10030853 | None:intergenic |
| TTTGCGAACAGAACCGAGAA+AGG | 0.535403 | 3_3:+10031329 | None:intergenic |
| TTACTACCTTTAAGATGGAT+CGG | 0.535770 | 3_3:-10031134 | Msa0441610:CDS |
| AAAGAGAGAGAAGAGAAGAG+AGG | 0.536432 | 3_3:+10034348 | None:intergenic |
| ATATAGGCGCGAAAGGGAAT+GGG | 0.537383 | 3_3:-10031000 | Msa0441610:CDS |
| GCGCGTAGAAACAGAAGAGT+TGG | 0.537625 | 3_3:-10031050 | Msa0441610:CDS |
| ATTACATCCGGTGATTACTC+AGG | 0.538427 | 3_3:-10031194 | Msa0441610:CDS |
| GATTTGGTTATTGGTTACAA+GGG | 0.538741 | 3_3:-10033839 | Msa0441610:CDS |
| AAACAAATGCTTATATTGTG+TGG | 0.539138 | 3_3:-10033861 | Msa0441610:CDS |
| AAGAGAGAGAAGAGAAGAGA+GGG | 0.539905 | 3_3:+10034349 | None:intergenic |
| AGAATCCCTTACATTATCAC+TGG | 0.541279 | 3_3:-10033654 | Msa0441610:CDS |
| TATTGGTGAATGAACAATGA+AGG | 0.541401 | 3_3:+10034298 | None:intergenic |
| CGAACAGAACCGAGAAAGGA+AGG | 0.544556 | 3_3:+10031333 | None:intergenic |
| TCAGATTTGAAACAATGAAG+AGG | 0.544666 | 3_3:+10034182 | None:intergenic |
| TGTGAGCTAACAATGGCATA+AGG | 0.546268 | 3_3:+10030886 | None:intergenic |
| TTCTACGAGGTTGTGGCGAG+TGG | 0.546685 | 3_3:+10034447 | None:intergenic |
| ATTGATCATGAAATCAAAAG+AGG | 0.549129 | 3_3:-10030732 | Msa0441610:three_prime_UTR |
| TGTAGATTGTTAAAATCCAA+AGG | 0.553682 | 3_3:+10030603 | None:intergenic |
| GCGTTCATGGCATTAGCCGC+AGG | 0.556853 | 3_3:-10031935 | Msa0441610:CDS |
| GCTGTGCTTCTCAGTAACTT+GGG | 0.559091 | 3_3:-10032040 | Msa0441610:CDS |
| AACAAGTGTCTTAACGACAT+TGG | 0.561515 | 3_3:+10030634 | None:intergenic |
| TTTCCGATGAGAAACCTGAT+AGG | 0.566163 | 3_3:-10031497 | Msa0441610:CDS |
| GTAGATTGTTAAAATCCAAA+GGG | 0.568093 | 3_3:+10030604 | None:intergenic |
| TTATGTCCGAAAGGCTGTGA+AGG | 0.568883 | 3_3:-10031305 | Msa0441610:CDS |
| CAAAGCTGATGCAAGGAAAG+AGG | 0.571448 | 3_3:+10031274 | None:intergenic |
| CTTTGACAATTCACAAGGTG+TGG | 0.571816 | 3_3:+10030797 | None:intergenic |
| TCAAGTACTAGTCAAATTGG+AGG | 0.573465 | 3_3:-10033885 | Msa0441610:CDS |
| ATCCATTACTGAAGTTGCAA+AGG | 0.575712 | 3_3:-10032014 | Msa0441610:CDS |
| ATCATGAACATGATTCTTGG+AGG | 0.577392 | 3_3:+10031866 | None:intergenic |
| TTGGTTCGATTAATGCATAT+AGG | 0.577741 | 3_3:-10031016 | Msa0441610:CDS |
| AATGATCATTAAAGCTACAA+AGG | 0.578447 | 3_3:+10030947 | None:intergenic |
| GGGAAGAAACACAAAATTGG+CGG | 0.578871 | 3_3:-10031971 | Msa0441610:CDS |
| AATCTTGATCCTATGATCAT+CGG | 0.579039 | 3_3:-10031590 | Msa0441610:CDS |
| TTAATGCATATAGGCGCGAA+AGG | 0.580820 | 3_3:-10031007 | Msa0441610:CDS |
| ATGCTCTTGTAGCTGAGTAT+GGG | 0.582866 | 3_3:-10031991 | Msa0441610:CDS |
| GGTTTGTTAATAATCACCAA+TGG | 0.584719 | 3_3:+10034119 | None:intergenic |
| AATTTCTTTCTCAACAAGAG+AGG | 0.586622 | 3_3:-10031813 | Msa0441610:CDS |
| TACCTCCAGTGATAATGTAA+GGG | 0.586765 | 3_3:+10033649 | None:intergenic |
| TGTACAAGTTGCAATACTGA+AGG | 0.587278 | 3_3:+10033756 | None:intergenic |
| TGTGTGTCAACCATAAATGT+AGG | 0.588044 | 3_3:+10034005 | None:intergenic |
| ACCTTGTGAATTGTCAAAGG+TGG | 0.589692 | 3_3:-10030793 | Msa0441610:three_prime_UTR |
| AAGTGTCTTAACGACATTGG+AGG | 0.590034 | 3_3:+10030637 | None:intergenic |
| TCAGAAAGAATTCCATAGAG+TGG | 0.590482 | 3_3:+10033702 | None:intergenic |
| TCTTGCAACACAATCCATCT+CGG | 0.591171 | 3_3:-10031756 | Msa0441610:CDS |
| ATCCAATGATCCATAAAAGT+GGG | 0.592815 | 3_3:+10031672 | None:intergenic |
| TTCTGCTAATCTTCCTATGG+TGG | 0.599176 | 3_3:-10033730 | Msa0441610:CDS |
| TTCATGGCATTAGCCGCAGG+TGG | 0.601108 | 3_3:-10031932 | Msa0441610:CDS |
| CACACCTTGTGAATTGTCAA+AGG | 0.601536 | 3_3:-10030796 | Msa0441610:three_prime_UTR |
| ATAACTAGAGTACATATCAA+AGG | 0.601717 | 3_3:+10030569 | None:intergenic |
| GATTACTCAGGCTTGACTGT+GGG | 0.603520 | 3_3:-10031182 | Msa0441610:CDS |
| ATCTTAGGCAACTTGATCGG+TGG | 0.604287 | 3_3:-10031908 | Msa0441610:CDS |
| TTCGCAAATTTATGTCCGAA+AGG | 0.605242 | 3_3:-10031314 | Msa0441610:CDS |
| GCCCGTAAGCATTGGAACAG+TGG | 0.605847 | 3_3:+10031643 | None:intergenic |
| ATAGGATCAAAGCTGATGCA+AGG | 0.610715 | 3_3:+10031267 | None:intergenic |
| TGCCTCCTGCTTCAAAGCGT+AGG | 0.610870 | 3_3:-10030858 | Msa0441610:three_prime_UTR |
| GGAATCTTAGGCAACTTGAT+CGG | 0.615694 | 3_3:-10031911 | Msa0441610:CDS |
| CAAGTACTAGTCAAATTGGA+GGG | 0.619714 | 3_3:-10033884 | Msa0441610:CDS |
| ATCCTACGCTTTGAAGCAGG+AGG | 0.619848 | 3_3:+10030856 | None:intergenic |
| TTGATCCTATGATCATCGGT+TGG | 0.620203 | 3_3:-10031586 | Msa0441610:CDS |
| ATCCCTTACATTATCACTGG+AGG | 0.623901 | 3_3:-10033651 | Msa0441610:intron |
| GTACAAGTTGCAATACTGAA+GGG | 0.623965 | 3_3:+10033757 | None:intergenic |
| AGTCAAGCCTGAGTAATCAC+CGG | 0.627145 | 3_3:+10031187 | None:intergenic |
| TCTGCCAAACCCGAAAAGCA+AGG | 0.628364 | 3_3:+10031377 | None:intergenic |
| AAGCACAGCTGCAACTAAGA+CGG | 0.631279 | 3_3:+10032054 | None:intergenic |
| ACCACCTTTGACAATTCACA+AGG | 0.633543 | 3_3:+10030792 | None:intergenic |
| TAGAGTGGTTTAGCCACCAT+AGG | 0.639848 | 3_3:+10033717 | None:intergenic |
| GCGCCTATCAGGTTTCTCAT+CGG | 0.641117 | 3_3:+10031494 | None:intergenic |
| CGAATATACAAGTAAAACAC+CGG | 0.643726 | 3_3:+10030671 | None:intergenic |
| TGATTACTCAGGCTTGACTG+TGG | 0.648155 | 3_3:-10031183 | Msa0441610:CDS |
| AAAGGGAATGGGAATCGCAA+AGG | 0.648256 | 3_3:-10030989 | Msa0441610:CDS |
| GTTGCCTAAGATTCCACCTG+CGG | 0.660068 | 3_3:+10031919 | None:intergenic |
| TGAAAATTAAGAGCAAGCCA+AGG | 0.671783 | 3_3:+10033804 | None:intergenic |
| TAAGCACTTCACGTGCAGCA+GGG | 0.681319 | 3_3:+10032077 | None:intergenic |
| GGATGTAATGCCGAGCAAAG+AGG | 0.684382 | 3_3:+10031208 | None:intergenic |
| CAACTCGTGTGAGCTAACAA+TGG | 0.700698 | 3_3:+10030879 | None:intergenic |
| ATATTGTAGACAGTTCTACG+AGG | 0.797859 | 3_3:+10034434 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAATAAAGGAAAAATA+GGG | + | chr3_3:10030754-10030773 | None:intergenic | 15.0% |
| !! | AAGAATAATAAAGGAAAAAT+AGG | + | chr3_3:10030755-10030774 | None:intergenic | 15.0% |
| !!! | GATTTTATTATCATCAATTT+TGG | - | chr3_3:10031910-10031929 | Msa0441610:CDS | 15.0% |
| !!! | TTTTAAGTTATTTTGTGTTT+AGG | - | chr3_3:10032325-10032344 | Msa0441610:intron | 15.0% |
| !!! | TGTAGTTTGTTAAAAATTGA+GGG | + | chr3_3:10030599-10030618 | None:intergenic | 20.0% |
| !! | GAGATAGAAAAGAATAATAA+AGG | + | chr3_3:10030764-10030783 | None:intergenic | 20.0% |
| !!! | ATACATTTTAATCTATGATG+AGG | - | chr3_3:10031435-10031454 | Msa0441610:CDS | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | + | chr3_3:10031488-10031507 | None:intergenic | 20.0% |
| !! | TGAAACCTTTATATTACATT+AGG | - | chr3_3:10032234-10032253 | Msa0441610:intron | 20.0% |
| !! | GAAACCTTTATATTACATTA+GGG | - | chr3_3:10032235-10032254 | Msa0441610:intron | 20.0% |
| !!! | TATTTTGTGTTTAGGTATTA+AGG | - | chr3_3:10032333-10032352 | Msa0441610:intron | 20.0% |
| !!! | ATTTTGTGTTTAGGTATTAA+GGG | - | chr3_3:10032334-10032353 | Msa0441610:intron | 20.0% |
| !!! | TTGTATTTTCAATTTCTACA+CGG | - | chr3_3:10032598-10032617 | Msa0441610:intron | 20.0% |
| !! | GTTATGAATAAAATTTACCT+TGG | - | chr3_3:10032648-10032667 | Msa0441610:intron | 20.0% |
| !!! | GTAATATTTTTATTCAACCA+AGG | + | chr3_3:10032668-10032687 | None:intergenic | 20.0% |
| !! | ACGAATATCAAGTTAAATAA+AGG | + | chr3_3:10032755-10032774 | None:intergenic | 20.0% |
| !!! | CCAAATAAGTTTCATTTTAT+GGG | + | chr3_3:10032835-10032854 | None:intergenic | 20.0% |
| !!! | ACCAAATAAGTTTCATTTTA+TGG | + | chr3_3:10032836-10032855 | None:intergenic | 20.0% |
| !! | AGACAGATAAATCTTAAATT+CGG | - | chr3_3:10033562-10033581 | Msa0441610:intron | 20.0% |
| !!! | ATTTTGTTTTTCTCTATGTT+TGG | - | chr3_3:10034149-10034168 | Msa0441610:CDS | 20.0% |
| !!! | GTAGTTTGTTAAAAATTGAG+GGG | + | chr3_3:10030598-10030617 | None:intergenic | 25.0% |
| !!! | GTGTAGTTTGTTAAAAATTG+AGG | + | chr3_3:10030600-10030619 | None:intergenic | 25.0% |
| ! | AATAAAGGAAAAATAGGGTA+TGG | + | chr3_3:10030749-10030768 | None:intergenic | 25.0% |
| ! | TGAAATTGCAAGATTAATCA+TGG | + | chr3_3:10030833-10030852 | None:intergenic | 25.0% |
| ! | TTGTGATGTTTGTGTAAATT+TGG | + | chr3_3:10030889-10030908 | None:intergenic | 25.0% |
| ! | AAACAAATGCTTATATTGTG+TGG | - | chr3_3:10031123-10031142 | Msa0441610:CDS | 25.0% |
| ! | TATGGCTAGTAATCTTAATT+TGG | - | chr3_3:10031203-10031222 | Msa0441610:CDS | 25.0% |
| ! | CTTTCTGATGTTATCTATAT+TGG | - | chr3_3:10031297-10031316 | Msa0441610:CDS | 25.0% |
| ! | TGATATTGAGATGTAGATAT+TGG | - | chr3_3:10031584-10031603 | Msa0441610:CDS | 25.0% |
| ! | TAGGAAATTGAGAAAATCAA+AGG | - | chr3_3:10031743-10031762 | Msa0441610:CDS | 25.0% |
| ! | ATGTAATATAAAGGTTTCAG+AGG | + | chr3_3:10032233-10032252 | None:intergenic | 25.0% |
| ! | AGAGTTATCTATCTTAATAC+CGG | + | chr3_3:10032540-10032559 | None:intergenic | 25.0% |
| ! | TATTCATAACGAAATTGATC+TGG | + | chr3_3:10032638-10032657 | None:intergenic | 25.0% |
| ! | GTGTATTATAAGATTTCAAG+AGG | - | chr3_3:10032689-10032708 | Msa0441610:intron | 25.0% |
| ! | AAAAGACATTAAGAAATGCA+AGG | - | chr3_3:10032722-10032741 | Msa0441610:intron | 25.0% |
| ! | CCCATAAAATGAAACTTATT+TGG | - | chr3_3:10032832-10032851 | Msa0441610:intron | 25.0% |
| ! | AATATCATGAACATGATTCT+TGG | + | chr3_3:10033124-10033143 | None:intergenic | 25.0% |
| !! | AAGAAAAAGTATGAGTAGAA+GGG | - | chr3_3:10033912-10033931 | Msa0441610:CDS | 25.0% |
| ! | AATGATCATTAAAGCTACAA+AGG | + | chr3_3:10034040-10034059 | None:intergenic | 25.0% |
| ! | ATTGATCATGAAATCAAAAG+AGG | - | chr3_3:10034252-10034271 | Msa0441610:five_prime_UTR | 25.0% |
| ! | GATGTATTTATTACATTGAC+CGG | - | chr3_3:10034294-10034313 | Msa0441610:five_prime_UTR | 25.0% |
| ! | GTAGATTGTTAAAATCCAAA+GGG | + | chr3_3:10034383-10034402 | None:intergenic | 25.0% |
| ! | TGTAGATTGTTAAAATCCAA+AGG | + | chr3_3:10034384-10034403 | None:intergenic | 25.0% |
| ! | ATAACTAGAGTACATATCAA+AGG | + | chr3_3:10034418-10034437 | None:intergenic | 25.0% |
| !! | GATATGTACTCTAGTTATTT+TGG | - | chr3_3:10034420-10034439 | Msa0441610:five_prime_UTR | 25.0% |
| TATTGGTGAATGAACAATGA+AGG | + | chr3_3:10030689-10030708 | None:intergenic | 30.0% | |
| ! | TCAGATTTGAAACAATGAAG+AGG | + | chr3_3:10030805-10030824 | None:intergenic | 30.0% |
| TTCATCACAAAAGAATCCAT+TGG | - | chr3_3:10030849-10030868 | Msa0441610:three_prime_UTR | 30.0% | |
| !! | GGTTTGTTAATAATCACCAA+TGG | + | chr3_3:10030868-10030887 | None:intergenic | 30.0% |
| TGTTGTGAACATGTTATGAT+TGG | + | chr3_3:10030916-10030935 | None:intergenic | 30.0% | |
| ATCTCAACAACCTACATTTA+TGG | - | chr3_3:10030969-10030988 | Msa0441610:exon | 30.0% | |
| GAGAGAGAATAAGAAAAAGA+AGG | - | chr3_3:10031017-10031036 | Msa0441610:CDS | 30.0% | |
| GAATAAGAAAAAGAAGGAAG+AGG | - | chr3_3:10031023-10031042 | Msa0441610:CDS | 30.0% | |
| AGAAGAGAATAAGAAGAAGA+AGG | - | chr3_3:10031068-10031087 | Msa0441610:CDS | 30.0% | |
| GAAGAGAATAAGAAGAAGAA+GGG | - | chr3_3:10031069-10031088 | Msa0441610:CDS | 30.0% | |
| AGTTCAAGTACTAGTCAAAT+TGG | - | chr3_3:10031096-10031115 | Msa0441610:CDS | 30.0% | |
| ATGCTTATATTGTGTGGATT+TGG | - | chr3_3:10031129-10031148 | Msa0441610:CDS | 30.0% | |
| ! | TATTGTGTGGATTTGGTTAT+TGG | - | chr3_3:10031136-10031155 | Msa0441610:CDS | 30.0% |
| ! | GATTTGGTTATTGGTTACAA+GGG | - | chr3_3:10031145-10031164 | Msa0441610:CDS | 30.0% |
| ! | GCTTGCTCTTAATTTTCATA+TGG | - | chr3_3:10031185-10031204 | Msa0441610:CDS | 30.0% |
| TCTGATGTTATCTATATTGG+TGG | - | chr3_3:10031300-10031319 | Msa0441610:CDS | 30.0% | |
| ACACGATTCAGTGTAAATAT+AGG | - | chr3_3:10031513-10031532 | Msa0441610:CDS | 30.0% | |
| TTCAGTGTAAATATAGGTGT+CGG | - | chr3_3:10031519-10031538 | Msa0441610:CDS | 30.0% | |
| TGAGATGTAGATATTGGTAA+TGG | - | chr3_3:10031590-10031609 | Msa0441610:CDS | 30.0% | |
| TAACTGACACTTCAGATTAA+AGG | + | chr3_3:10031693-10031712 | None:intergenic | 30.0% | |
| TTAGATAGATTAGTAGTCAC+TGG | + | chr3_3:10032045-10032064 | None:intergenic | 30.0% | |
| !! | GTTAAGATGGTTCTAATTTG+CGG | - | chr3_3:10032117-10032136 | Msa0441610:CDS | 30.0% |
| TTTGATATTGCGACAAAATG+CGG | - | chr3_3:10032165-10032184 | Msa0441610:intron | 30.0% | |
| ACAGCCCTAATGTAATATAA+AGG | + | chr3_3:10032242-10032261 | None:intergenic | 30.0% | |
| ATCCAAACAAAAGGAATTAC+AGG | + | chr3_3:10032292-10032311 | None:intergenic | 30.0% | |
| TGTTTAGGTATTAAGGGAAA+GGG | - | chr3_3:10032340-10032359 | Msa0441610:intron | 30.0% | |
| GAGTTATCTATCTTAATACC+GGG | + | chr3_3:10032539-10032558 | None:intergenic | 30.0% | |
| TAACATGTGGTATGTTCAAT+TGG | - | chr3_3:10032568-10032587 | Msa0441610:intron | 30.0% | |
| !!! | TTTTTTTGCAGATCTTTGCT+TGG | - | chr3_3:10032867-10032886 | Msa0441610:intron | 30.0% |
| TATGGGAAGAAACACAAAAT+TGG | - | chr3_3:10033010-10033029 | Msa0441610:intron | 30.0% | |
| AATTTCTTTCTCAACAAGAG+AGG | - | chr3_3:10033171-10033190 | Msa0441610:intron | 30.0% | |
| !!! | TTTTTTGATAGTTTCCGAGA+TGG | + | chr3_3:10033245-10033264 | None:intergenic | 30.0% |
| !! | GTATTTCTTACCCACTTTTA+TGG | - | chr3_3:10033302-10033321 | Msa0441610:intron | 30.0% |
| ATCCAATGATCCATAAAAGT+GGG | + | chr3_3:10033315-10033334 | None:intergenic | 30.0% | |
| AATCTTGATCCTATGATCAT+CGG | - | chr3_3:10033394-10033413 | Msa0441610:intron | 30.0% | |
| ! | CCAATATCGGTTATAAAGTA+CGG | + | chr3_3:10033461-10033480 | None:intergenic | 30.0% |
| !! | TCGGAAACTTTTTCCAATAT+CGG | + | chr3_3:10033474-10033493 | None:intergenic | 30.0% |
| !! | GTTACTTCTTGATCTTGTTT+TGG | - | chr3_3:10033537-10033556 | Msa0441610:intron | 30.0% |
| TAAATTCGGAATTCCAAATG+AGG | - | chr3_3:10033576-10033595 | Msa0441610:intron | 30.0% | |
| ATCCTATCATCAATAGTTAG+TGG | - | chr3_3:10033733-10033752 | Msa0441610:CDS | 30.0% | |
| !!! | TCAATAGTTAGTGGCTTTTT+TGG | - | chr3_3:10033742-10033761 | Msa0441610:CDS | 30.0% |
| !! | TTACTACCTTTAAGATGGAT+CGG | - | chr3_3:10033850-10033869 | Msa0441610:CDS | 30.0% |
| ! | GAAGAAAAAGTATGAGTAGA+AGG | - | chr3_3:10033911-10033930 | Msa0441610:CDS | 30.0% |
| ! | TTGGTTCGATTAATGCATAT+AGG | - | chr3_3:10033968-10033987 | Msa0441610:CDS | 30.0% |
| !! | GTAGCTTTAATGATCATTCA+AGG | - | chr3_3:10034042-10034061 | Msa0441610:CDS | 30.0% |
| AATGATCATTCAAGGATGAT+TGG | - | chr3_3:10034050-10034069 | Msa0441610:CDS | 30.0% | |
| CTATGTTTGGATTCTTAACA+TGG | - | chr3_3:10034162-10034181 | Msa0441610:exon | 30.0% | |
| ATTTCATGATCAATGTCCTA+AGG | + | chr3_3:10034246-10034265 | None:intergenic | 30.0% | |
| ! | CAAAAGAGGTATGTTTGTAT+AGG | - | chr3_3:10034266-10034285 | Msa0441610:five_prime_UTR | 30.0% |
| CGAATATACAAGTAAAACAC+CGG | + | chr3_3:10034316-10034335 | None:intergenic | 30.0% | |
| ATATTGTAGACAGTTCTACG+AGG | + | chr3_3:10030553-10030572 | None:intergenic | 35.0% | |
| GATGCACTCATTGTAGTTAT+TGG | + | chr3_3:10030706-10030725 | None:intergenic | 35.0% | |
| TGTGTGTCAACCATAAATGT+AGG | + | chr3_3:10030982-10031001 | None:intergenic | 35.0% | |
| TCAAGTACTAGTCAAATTGG+AGG | - | chr3_3:10031099-10031118 | Msa0441610:CDS | 35.0% | |
| CAAGTACTAGTCAAATTGGA+GGG | - | chr3_3:10031100-10031119 | Msa0441610:CDS | 35.0% | |
| ! | GGATTTGGTTATTGGTTACA+AGG | - | chr3_3:10031144-10031163 | Msa0441610:CDS | 35.0% |
| ! | AAGGGTTTAGATGTTTTCCT+TGG | - | chr3_3:10031163-10031182 | Msa0441610:CDS | 35.0% |
| TGAAAATTAAGAGCAAGCCA+AGG | + | chr3_3:10031183-10031202 | None:intergenic | 35.0% | |
| GTACAAGTTGCAATACTGAA+GGG | + | chr3_3:10031230-10031249 | None:intergenic | 35.0% | |
| TGTACAAGTTGCAATACTGA+AGG | + | chr3_3:10031231-10031250 | None:intergenic | 35.0% | |
| GTATTCTGCTAATCTTCCTA+TGG | - | chr3_3:10031251-10031270 | Msa0441610:CDS | 35.0% | |
| TCAGAAAGAATTCCATAGAG+TGG | + | chr3_3:10031285-10031304 | None:intergenic | 35.0% | |
| AGAATCCCTTACATTATCAC+TGG | - | chr3_3:10031330-10031349 | Msa0441610:CDS | 35.0% | |
| ! | TACCTCCAGTGATAATGTAA+GGG | + | chr3_3:10031338-10031357 | None:intergenic | 35.0% |
| ! | ATACCTCCAGTGATAATGTA+AGG | + | chr3_3:10031339-10031358 | None:intergenic | 35.0% |
| GGTATAAATTTAACCCCACA+TGG | - | chr3_3:10031354-10031373 | Msa0441610:CDS | 35.0% | |
| AGAAAAAGCAAAAGCCATGT+GGG | + | chr3_3:10031371-10031390 | None:intergenic | 35.0% | |
| GAAAGTGATTGAACGTAAAC+CGG | - | chr3_3:10031629-10031648 | Msa0441610:CDS | 35.0% | |
| TTCCTAACTACTCACTTTAG+AGG | + | chr3_3:10031729-10031748 | None:intergenic | 35.0% | |
| GAGTGAATATCTCACTTTAG+TGG | - | chr3_3:10031864-10031883 | Msa0441610:CDS | 35.0% | |
| !! | TCACAGCTTGTTACAGATAA+GGG | + | chr3_3:10031944-10031963 | None:intergenic | 35.0% |
| AGGTAACAACTCACAAGAAT+TGG | - | chr3_3:10031963-10031982 | Msa0441610:CDS | 35.0% | |
| CATAATCCATAATGCATGTG+TGG | - | chr3_3:10032095-10032114 | Msa0441610:CDS | 35.0% | |
| TCTTAACCACACATGCATTA+TGG | + | chr3_3:10032104-10032123 | None:intergenic | 35.0% | |
| TAATGCATGTGTGGTTAAGA+TGG | - | chr3_3:10032104-10032123 | Msa0441610:CDS | 35.0% | |
| ATCAGACTGATCCAAACAAA+AGG | + | chr3_3:10032301-10032320 | None:intergenic | 35.0% | |
| GTGTTTAGGTATTAAGGGAA+AGG | - | chr3_3:10032339-10032358 | Msa0441610:intron | 35.0% | |
| TAAGGGAAAGGGAAAATACT+TGG | - | chr3_3:10032351-10032370 | Msa0441610:intron | 35.0% | |
| AAGGGAAAGGGAAAATACTT+GGG | - | chr3_3:10032352-10032371 | Msa0441610:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | + | chr3_3:10032436-10032455 | None:intergenic | 35.0% | |
| GAACATACCACATGTTAACA+CGG | + | chr3_3:10032565-10032584 | None:intergenic | 35.0% | |
| AGACATTAAGAAATGCAAGG+TGG | - | chr3_3:10032725-10032744 | Msa0441610:intron | 35.0% | |
| GCAAAGATCTGCAAAAAAAC+TGG | + | chr3_3:10032866-10032885 | None:intergenic | 35.0% | |
| ATCCATTACTGAAGTTGCAA+AGG | - | chr3_3:10032970-10032989 | Msa0441610:intron | 35.0% | |
| ATCCTTTGCAACTTCAGTAA+TGG | + | chr3_3:10032975-10032994 | None:intergenic | 35.0% | |
| ATCATGAACATGATTCTTGG+AGG | + | chr3_3:10033121-10033140 | None:intergenic | 35.0% | |
| TGCTAGTTGTACAGATAGTA+AGG | + | chr3_3:10033152-10033171 | None:intergenic | 35.0% | |
| TCAACAAGAGAGGATTCTTT+AGG | - | chr3_3:10033181-10033200 | Msa0441610:intron | 35.0% | |
| !! | AGATTTAGAGTTGATGGTTG+TGG | + | chr3_3:10033211-10033230 | None:intergenic | 35.0% |
| ! | GTTGCAAGATTTAGAGTTGA+TGG | + | chr3_3:10033217-10033236 | None:intergenic | 35.0% |
| !! | TACCCACTTTTATGGATCAT+TGG | - | chr3_3:10033310-10033329 | Msa0441610:intron | 35.0% |
| GATCCAATGATCCATAAAAG+TGG | + | chr3_3:10033316-10033335 | None:intergenic | 35.0% | |
| CTGTGTCTGATAGCAAAATA+TGG | + | chr3_3:10033368-10033387 | None:intergenic | 35.0% | |
| CCGTACTTTATAACCGATAT+TGG | - | chr3_3:10033458-10033477 | Msa0441610:intron | 35.0% | |
| GTTTAAACTCCTTCCTTTCT+CGG | - | chr3_3:10033642-10033661 | Msa0441610:intron | 35.0% | |
| TTCGCAAATTTATGTCCGAA+AGG | - | chr3_3:10033670-10033689 | Msa0441610:CDS | 35.0% | |
| ! | AGCCACTAACTATTGATGAT+AGG | + | chr3_3:10033738-10033757 | None:intergenic | 35.0% |
| ! | CAGCTTTACTACCTTTAAGA+TGG | - | chr3_3:10033845-10033864 | Msa0441610:CDS | 35.0% |
| ATTGAACCGATCCATCTTAA+AGG | + | chr3_3:10033859-10033878 | None:intergenic | 35.0% | |
| ! | ATTGTCAAAGGTGGTTTTTG+AGG | - | chr3_3:10034200-10034219 | Msa0441610:five_prime_UTR | 35.0% |
| AACAAGTGTCTTAACGACAT+TGG | + | chr3_3:10034353-10034372 | None:intergenic | 35.0% | |
| ! | CACTTGTTAATAAGACCCTT+TGG | - | chr3_3:10034365-10034384 | Msa0441610:five_prime_UTR | 35.0% |
| AAGAGAGAGAAGAGAAGAGA+GGG | + | chr3_3:10030638-10030657 | None:intergenic | 40.0% | |
| AAAGAGAGAGAAGAGAAGAG+AGG | + | chr3_3:10030639-10030658 | None:intergenic | 40.0% | |
| TTCTGCTAATCTTCCTATGG+TGG | - | chr3_3:10031254-10031273 | Msa0441610:CDS | 40.0% | |
| ATCCCTTACATTATCACTGG+AGG | - | chr3_3:10031333-10031352 | Msa0441610:CDS | 40.0% | |
| GAAAAAGCAAAAGCCATGTG+GGG | + | chr3_3:10031370-10031389 | None:intergenic | 40.0% | |
| CAGAAAAAGCAAAAGCCATG+TGG | + | chr3_3:10031372-10031391 | None:intergenic | 40.0% | |
| AATGAAACACAGACACTCCT+CGG | + | chr3_3:10031560-10031579 | None:intergenic | 40.0% | |
| !! | AGCCTCTAAAGTGAGTAGTT+AGG | - | chr3_3:10031724-10031743 | Msa0441610:CDS | 40.0% |
| !! | CTCACAGCTTGTTACAGATA+AGG | + | chr3_3:10031945-10031964 | None:intergenic | 40.0% |
| CTTATCTGTAACAAGCTGTG+AGG | - | chr3_3:10031943-10031962 | Msa0441610:CDS | 40.0% | |
| AACTGCAATTACGGCTGTAT+TGG | + | chr3_3:10032192-10032211 | None:intergenic | 40.0% | |
| TGGCACAACAACTGCAATTA+CGG | + | chr3_3:10032201-10032220 | None:intergenic | 40.0% | |
| CTGAAGTAGGTTATCAGTTG+CGG | + | chr3_3:10032268-10032287 | None:intergenic | 40.0% | |
| ! | GGCCTGTAATTCCTTTTGTT+TGG | - | chr3_3:10032287-10032306 | Msa0441610:intron | 40.0% |
| TGTCACCGTGACATTAAATC+TGG | - | chr3_3:10032383-10032402 | Msa0441610:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr3_3:10032384-10032403 | Msa0441610:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr3_3:10032395-10032414 | Msa0441610:intron | 40.0% | |
| CACAACACATACAACACATC+TGG | + | chr3_3:10032437-10032456 | None:intergenic | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | - | chr3_3:10032437-10032456 | Msa0441610:intron | 40.0% | |
| CACATTGCCACATAACATCT+GGG | + | chr3_3:10032463-10032482 | None:intergenic | 40.0% | |
| ACACATTGCCACATAACATC+TGG | + | chr3_3:10032464-10032483 | None:intergenic | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr3_3:10032384-10032403 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr3_3:10032383-10032402 | None:intergenic | 40.0% | |
| ACTCTTTCCGTGTTAACATG+TGG | - | chr3_3:10032555-10032574 | Msa0441610:intron | 40.0% | |
| ATGCTCTTGTAGCTGAGTAT+GGG | - | chr3_3:10032993-10033012 | Msa0441610:intron | 40.0% | |
| GGGAAGAAACACAAAATTGG+CGG | - | chr3_3:10033013-10033032 | Msa0441610:intron | 40.0% | |
| GGAATCTTAGGCAACTTGAT+CGG | - | chr3_3:10033073-10033092 | Msa0441610:intron | 40.0% | |
| TCTTGCAACACAATCCATCT+CGG | - | chr3_3:10033228-10033247 | Msa0441610:intron | 40.0% | |
| ! | ACAAGCGTCAGATCTTTTTG+TGG | - | chr3_3:10033264-10033283 | Msa0441610:intron | 40.0% |
| TTGATCCTATGATCATCGGT+TGG | - | chr3_3:10033398-10033417 | Msa0441610:intron | 40.0% | |
| TTTCCGATGAGAAACCTGAT+AGG | - | chr3_3:10033487-10033506 | Msa0441610:intron | 40.0% | |
| ATAGGATCAAAGCTGATGCA+AGG | + | chr3_3:10033720-10033739 | None:intergenic | 40.0% | |
| !!! | GTTAGTGGCTTTTTTGGTGT+TGG | - | chr3_3:10033748-10033767 | Msa0441610:CDS | 40.0% |
| !!! | TGGCTTTTTTGGTGTTGGAT+TGG | - | chr3_3:10033753-10033772 | Msa0441610:CDS | 40.0% |
| ATTACATCCGGTGATTACTC+AGG | - | chr3_3:10033790-10033809 | Msa0441610:CDS | 40.0% | |
| TCTGAATCAGACTGTGACAT+AGG | + | chr3_3:10033883-10033902 | None:intergenic | 40.0% | |
| AGAGTTGGAAAAGTCGTGAT+TGG | - | chr3_3:10033949-10033968 | Msa0441610:CDS | 40.0% | |
| TTAATGCATATAGGCGCGAA+AGG | - | chr3_3:10033977-10033996 | Msa0441610:CDS | 40.0% | |
| TAATGCATATAGGCGCGAAA+GGG | - | chr3_3:10033978-10033997 | Msa0441610:CDS | 40.0% | |
| TGTGAGCTAACAATGGCATA+AGG | + | chr3_3:10034101-10034120 | None:intergenic | 40.0% | |
| !! | AAAATCCTACGCTTTGAAGC+AGG | + | chr3_3:10034134-10034153 | None:intergenic | 40.0% |
| CTTTGACAATTCACAAGGTG+TGG | + | chr3_3:10034190-10034209 | None:intergenic | 40.0% | |
| CACACCTTGTGAATTGTCAA+AGG | - | chr3_3:10034188-10034207 | Msa0441610:five_prime_UTR | 40.0% | |
| ACCTTGTGAATTGTCAAAGG+TGG | - | chr3_3:10034191-10034210 | Msa0441610:five_prime_UTR | 40.0% | |
| ACCACCTTTGACAATTCACA+AGG | + | chr3_3:10034195-10034214 | None:intergenic | 40.0% | |
| AAGTGTCTTAACGACATTGG+AGG | + | chr3_3:10034350-10034369 | None:intergenic | 40.0% | |
| TAGACAGTTCTACGAGGTTG+TGG | + | chr3_3:10030547-10030566 | None:intergenic | 45.0% | |
| TAGAGTGGTTTAGCCACCAT+AGG | + | chr3_3:10031270-10031289 | None:intergenic | 45.0% | |
| ATGGTGGCTAAACCACTCTA+TGG | - | chr3_3:10031270-10031289 | Msa0441610:CDS | 45.0% | |
| AAACCGGTAACCACATGTGT+TGG | - | chr3_3:10031645-10031664 | Msa0441610:CDS | 45.0% | |
| ACACCAACACATGTGGTTAC+CGG | + | chr3_3:10031651-10031670 | None:intergenic | 45.0% | |
| !! | CACATGTGTTGGTGTTGTGT+CGG | - | chr3_3:10031656-10031675 | Msa0441610:CDS | 45.0% |
| !! | TAGTAGTCACTGGCTTTGCT+TGG | + | chr3_3:10032035-10032054 | None:intergenic | 45.0% |
| !! | ATGGTTCTAATTTGCGGCCA+CGG | - | chr3_3:10032123-10032142 | Msa0441610:intron | 45.0% |
| CGCAACTGATAACCTACTTC+AGG | - | chr3_3:10032266-10032285 | Msa0441610:intron | 45.0% | |
| AGGAATTACAGGCCTGAAGT+AGG | + | chr3_3:10032281-10032300 | None:intergenic | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | + | chr3_3:10032489-10032508 | None:intergenic | 45.0% | |
| CACAACACAACACCTTTGTG+TGG | + | chr3_3:10032410-10032429 | None:intergenic | 45.0% | |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | - | chr3_3:10032410-10032429 | Msa0441610:intron | 45.0% |
| ATGTGGCAATGTGTGTTGTG+TGG | - | chr3_3:10032470-10032489 | Msa0441610:intron | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | chr3_3:10032489-10032508 | Msa0441610:intron | 45.0% | |
| !! | CTTAATACCGGGAAGCACTT+GGG | + | chr3_3:10032528-10032547 | None:intergenic | 45.0% |
| !! | TCTTAATACCGGGAAGCACT+TGG | + | chr3_3:10032529-10032548 | None:intergenic | 45.0% |
| AAGCACAGCTGCAACTAAGA+CGG | + | chr3_3:10032933-10032952 | None:intergenic | 45.0% | |
| AGCTGTGCTTCTCAGTAACT+TGG | - | chr3_3:10032943-10032962 | Msa0441610:intron | 45.0% | |
| GCTGTGCTTCTCAGTAACTT+GGG | - | chr3_3:10032944-10032963 | Msa0441610:intron | 45.0% | |
| GATGCTCTTGTAGCTGAGTA+TGG | - | chr3_3:10032992-10033011 | Msa0441610:intron | 45.0% | |
| CCATGAACGCGTATGATTGT+AGG | + | chr3_3:10033039-10033058 | None:intergenic | 45.0% | |
| CCTACAATCATACGCGTTCA+TGG | - | chr3_3:10033036-10033055 | Msa0441610:intron | 45.0% | |
| ATCTTAGGCAACTTGATCGG+TGG | - | chr3_3:10033076-10033095 | Msa0441610:intron | 45.0% | |
| TGCCACTGTTCCAATGCTTA+CGG | - | chr3_3:10033339-10033358 | Msa0441610:intron | 45.0% | |
| AATATGGAGCCCGTAAGCAT+TGG | + | chr3_3:10033352-10033371 | None:intergenic | 45.0% | |
| CTAGACCAACCGATGATCAT+AGG | + | chr3_3:10033406-10033425 | None:intergenic | 45.0% | |
| !! | ATCGGTTGGTCTAGAGTGAT+TGG | - | chr3_3:10033412-10033431 | Msa0441610:intron | 45.0% |
| ! | GGTCAGTTGATGCTTCTTTC+AGG | - | chr3_3:10033433-10033452 | Msa0441610:intron | 45.0% |
| GAAGTAACGACGAAGCGTAT+AGG | + | chr3_3:10033525-10033544 | None:intergenic | 45.0% | |
| TTTGCGAACAGAACCGAGAA+AGG | + | chr3_3:10033658-10033677 | None:intergenic | 45.0% | |
| TTATGTCCGAAAGGCTGTGA+AGG | - | chr3_3:10033679-10033698 | Msa0441610:CDS | 45.0% | |
| AGAGATCCTTCACAGCCTTT+CGG | + | chr3_3:10033688-10033707 | None:intergenic | 45.0% | |
| CAAAGCTGATGCAAGGAAAG+AGG | + | chr3_3:10033713-10033732 | None:intergenic | 45.0% | |
| TCTTTGCTCGGCATTACATC+CGG | - | chr3_3:10033778-10033797 | Msa0441610:CDS | 45.0% | |
| AGTCAAGCCTGAGTAATCAC+CGG | + | chr3_3:10033800-10033819 | None:intergenic | 45.0% | |
| TGATTACTCAGGCTTGACTG+TGG | - | chr3_3:10033801-10033820 | Msa0441610:CDS | 45.0% | |
| GATTACTCAGGCTTGACTGT+GGG | - | chr3_3:10033802-10033821 | Msa0441610:CDS | 45.0% | |
| ATATAGGCGCGAAAGGGAAT+GGG | - | chr3_3:10033984-10034003 | Msa0441610:CDS | 45.0% | |
| AAAGGGAATGGGAATCGCAA+AGG | - | chr3_3:10033995-10034014 | Msa0441610:CDS | 45.0% | |
| CAACTCGTGTGAGCTAACAA+TGG | + | chr3_3:10034108-10034127 | None:intergenic | 45.0% | |
| !! | GTCAAAGGTGGTTTTTGAGG+AGG | - | chr3_3:10034203-10034222 | Msa0441610:five_prime_UTR | 45.0% |
| GAATGCTAACACGTGTCCTT+AGG | - | chr3_3:10034227-10034246 | Msa0441610:five_prime_UTR | 45.0% | |
| !! | ATATTTATAAAAAAAATCAA+TGG | + | chr3_3:10031819-10031838 | None:intergenic | 5.0% |
| !! | ATATAGGTGTCGGTGTCGTG+TGG | - | chr3_3:10031529-10031548 | Msa0441610:CDS | 50.0% |
| CGACACAACACCAACACATG+TGG | + | chr3_3:10031658-10031677 | None:intergenic | 50.0% | |
| GGTTTCAGAGGTCACTACGA+TGG | + | chr3_3:10032221-10032240 | None:intergenic | 50.0% | |
| TGTGTGGCCCAGATGTTATG+TGG | - | chr3_3:10032453-10032472 | Msa0441610:intron | 50.0% | |
| TATGTCACCCAAGTGCTTCC+CGG | - | chr3_3:10032518-10032537 | Msa0441610:intron | 50.0% | |
| TAAGCACTTCACGTGCAGCA+GGG | + | chr3_3:10032910-10032929 | None:intergenic | 50.0% | |
| TTAGCCGCAGGTGGAATCTT+AGG | - | chr3_3:10033061-10033080 | Msa0441610:intron | 50.0% | |
| GTTGCCTAAGATTCCACCTG+CGG | + | chr3_3:10033068-10033087 | None:intergenic | 50.0% | |
| GCCACTGTTCCAATGCTTAC+GGG | - | chr3_3:10033340-10033359 | Msa0441610:intron | 50.0% | |
| GCGCCTATCAGGTTTCTCAT+CGG | + | chr3_3:10033493-10033512 | None:intergenic | 50.0% | |
| CAAGGAGCGAACACCTCATT+TGG | + | chr3_3:10033592-10033611 | None:intergenic | 50.0% | |
| !! | GGTGTTCGCTCCTTGCTTTT+CGG | - | chr3_3:10033597-10033616 | Msa0441610:intron | 50.0% |
| !! | GTGTTCGCTCCTTGCTTTTC+GGG | - | chr3_3:10033598-10033617 | Msa0441610:intron | 50.0% |
| TCTGCCAAACCCGAAAAGCA+AGG | + | chr3_3:10033610-10033629 | None:intergenic | 50.0% | |
| CGAACAGAACCGAGAAAGGA+AGG | + | chr3_3:10033654-10033673 | None:intergenic | 50.0% | |
| !! | GTTGGATTGGCCTCTTTGCT+CGG | - | chr3_3:10033766-10033785 | Msa0441610:CDS | 50.0% |
| GGATGTAATGCCGAGCAAAG+AGG | + | chr3_3:10033779-10033798 | None:intergenic | 50.0% | |
| GCGCGTAGAAACAGAAGAGT+TGG | - | chr3_3:10033934-10033953 | Msa0441610:CDS | 50.0% | |
| CATATAGGCGCGAAAGGGAA+TGG | - | chr3_3:10033983-10034002 | Msa0441610:CDS | 50.0% | |
| !! | ATCCTACGCTTTGAAGCAGG+AGG | + | chr3_3:10034131-10034150 | None:intergenic | 50.0% |
| TTCTACGAGGTTGTGGCGAG+TGG | + | chr3_3:10030540-10030559 | None:intergenic | 55.0% | |
| ! | CTAATTTGCGGCCACGGTTG+CGG | - | chr3_3:10032129-10032148 | Msa0441610:intron | 55.0% |
| GTAAGCACTTCACGTGCAGC+AGG | + | chr3_3:10032911-10032930 | None:intergenic | 55.0% | |
| TTCATGGCATTAGCCGCAGG+TGG | - | chr3_3:10033052-10033071 | Msa0441610:intron | 55.0% | |
| !! | GCCCGTAAGCATTGGAACAG+TGG | + | chr3_3:10033344-10033363 | None:intergenic | 55.0% |
| !!! | CGCTCCTTGCTTTTCGGGTT+TGG | - | chr3_3:10033603-10033622 | Msa0441610:intron | 55.0% |
| TGCCTCCTGCTTCAAAGCGT+AGG | - | chr3_3:10034126-10034145 | Msa0441610:CDS | 55.0% | |
| ! | GGTGTCGTGTGGCTAATCCG+AGG | - | chr3_3:10031540-10031559 | Msa0441610:CDS | 60.0% |
| TCGCAGCATAACCGCAACCG+TGG | + | chr3_3:10032143-10032162 | None:intergenic | 60.0% | |
| GCGTTCATGGCATTAGCCGC+AGG | - | chr3_3:10033049-10033068 | Msa0441610:intron | 60.0% | |
| GGATCTGCACTGCGCCTATC+AGG | + | chr3_3:10033504-10033523 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 10030536 | 10034470 | 10030536 | ID=Msa0441610;Name=Msa0441610 |
| chr3_3 | mRNA | 10030536 | 10034470 | 10030536 | ID=Msa0441610-mRNA-1;Parent=Msa0441610;Name=Msa0441610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=296|1|1|1|1|1|2|450|558 |
| chr3_3 | exon | 10030536 | 10032139 | 10030536 | ID=Msa0441610-mRNA-1:exon:2143;Parent=Msa0441610-mRNA-1 |
| chr3_3 | exon | 10033652 | 10034470 | 10033652 | ID=Msa0441610-mRNA-1:exon:2142;Parent=Msa0441610-mRNA-1 |
| chr3_3 | five_prime_UTR | 10034175 | 10034470 | 10034175 | ID=Msa0441610-mRNA-1:five_prime_utr;Parent=Msa0441610-mRNA-1 |
| chr3_3 | CDS | 10033652 | 10034174 | 10033652 | ID=Msa0441610-mRNA-1:cds;Parent=Msa0441610-mRNA-1 |
| chr3_3 | CDS | 10030986 | 10032139 | 10030986 | ID=Msa0441610-mRNA-1:cds;Parent=Msa0441610-mRNA-1 |
| chr3_3 | three_prime_UTR | 10030536 | 10030985 | 10030536 | ID=Msa0441610-mRNA-1:three_prime_utr;Parent=Msa0441610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
