AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0489110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0489110 MtrunA17_Chr3g0079271 97.496 559 13 1 1 558 1 559 0.0 1109
Msa0489110 MtrunA17_Chr2g0293351 45.558 439 216 5 98 525 21 447 2.03e-122 367
Msa0489110 MtrunA17_Chr2g0293371 41.226 359 190 4 176 523 9 357 5.06e-80 255
Msa0489110 MtrunA17_Chr2g0293361 43.182 264 139 2 263 526 1 253 1.72e-64 211
Msa0489110 MtrunA17_Chr3g0098661 32.000 475 265 5 97 513 13 487 2.68e-64 218
Msa0489110 MtrunA17_Chr1g0205221 29.798 396 266 5 108 497 120 509 1.69e-36 142
Msa0489110 MtrunA17_Chr1g0150001 28.148 405 271 7 123 519 75 467 1.08e-33 134
Msa0489110 MtrunA17_Chr1g0150031 29.299 157 111 0 357 513 5 161 1.33e-16 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0489110 AT2G33280.1 56.673 547 221 5 11 553 3 537 0.0 572
Msa0489110 AT2G33280.3 63.170 429 158 0 125 553 1 429 0.0 516
Msa0489110 AT1G04570.1 62.876 466 168 2 94 558 81 542 2.40e-179 517
Msa0489110 AT2G33280.2 61.408 355 137 0 199 553 1 355 4.38e-142 415
Msa0489110 AT1G04570.2 61.097 383 144 2 177 558 16 394 2.14e-130 386
Msa0489110 AT1G64890.1 42.152 446 239 4 88 521 2 440 3.30e-100 310
Msa0489110 AT5G54860.1 32.696 471 262 6 97 513 13 482 8.50e-66 222
Msa0489110 AT2G32040.1 25.581 516 337 11 19 497 20 525 1.60e-35 140
Msa0489110 AT2G32040.2 28.463 397 272 6 108 497 3 394 9.07e-33 130
Msa0489110 AT5G25050.1 24.824 427 297 8 119 535 66 478 4.28e-28 118
Msa0489110 AT5G25040.2 25.847 472 297 13 105 541 58 511 3.24e-24 106
Msa0489110 AT5G10820.1 26.276 392 248 10 145 516 104 474 1.63e-23 104
Msa0489110 AT5G25040.4 25.221 452 300 12 105 541 58 486 3.01e-23 103
Msa0489110 AT1G79710.2 22.642 424 314 5 122 540 73 487 4.94e-23 103
Msa0489110 AT1G79710.1 22.642 424 314 5 122 540 73 487 4.94e-23 103
Msa0489110 AT5G25040.1 26.630 368 236 11 105 461 58 402 1.05e-18 89.4
Msa0489110 AT1G79710.3 22.754 334 244 5 122 450 73 397 2.00e-17 85.1
Msa0489110 AT5G25040.5 27.513 189 133 1 357 541 151 339 1.95e-15 78.2
Msa0489110 AT5G25040.3 26.911 327 205 11 105 420 58 361 4.34e-14 74.7

Find 166 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATGTACTCTAGTTATTT+TGG 0.182824 3_4:+9293603 Msa0489110:three_prime_UTR
CTTTCTGATGTTATCTATAT+TGG 0.193250 3_4:+9290706 Msa0489110:CDS
GATACACTCATTGTAGTTAT+TGG 0.199946 3_4:-9290111 None:intergenic
GGTCAGTTGATGCTTCTTTC+AGG 0.200974 3_4:+9292616 Msa0489110:CDS
TATTGTGTGGATTTGGTTAT+TGG 0.223114 3_4:+9290545 Msa0489110:CDS
TTGTGATGTTTGTGTAAATT+TGG 0.237519 3_4:-9290295 None:intergenic
CCGTACTTTATAACCGATAT+TGG 0.258220 3_4:+9292641 Msa0489110:CDS
GGAGTTATAGGGAAATTGTT+AGG 0.265706 3_4:-9289849 None:intergenic
TATGGCTAGTAATCTCAATT+TGG 0.267578 3_4:+9290612 Msa0489110:CDS
AAGTGACACTACGAGGATTT+TGG 0.277784 3_4:-9289910 None:intergenic
GTTATTGGTTACAAGGGTTT+AGG 0.279199 3_4:+9290560 Msa0489110:CDS
AGTTCAAGTACTAGTCAAAT+TGG 0.280786 3_4:+9290505 Msa0489110:CDS
GTTACTTCTTGATCTTGTTT+TGG 0.301857 3_4:+9292720 Msa0489110:CDS
GTTTAAACTCCTTCCTTTCT+CGG 0.304522 3_4:+9292825 Msa0489110:CDS
ATCGAACCAATCCATCTTAA+AGG 0.311135 3_4:-9293039 None:intergenic
AGTGTGGGTTTGGGAGTTAT+AGG 0.313250 3_4:-9289861 None:intergenic
GGATCTGCACTGCGCCTATC+AGG 0.329497 3_4:-9292684 None:intergenic
ACGCGCGGAGAGTGTGGGTT+TGG 0.332820 3_4:-9289871 None:intergenic
CAAGGAGCGAACACCTCATT+TGG 0.337799 3_4:-9292772 None:intergenic
GTGTGGGTTTGGGAGTTATA+GGG 0.341863 3_4:-9289860 None:intergenic
GCCACTGTTCCAATGCTTAC+GGG 0.347306 3_4:+9292523 Msa0489110:CDS
TCAACAAGAGAGGATTCTTT+AGG 0.351653 3_4:+9292364 Msa0489110:CDS
ATGCTTATATTGTGTGGATT+TGG 0.352009 3_4:+9290538 Msa0489110:CDS
ATATTTGAGATCAGTTGATA+TGG 0.353975 3_4:-9293642 None:intergenic
GTTGCAAGATTTAGAGTTGA+TGG 0.359251 3_4:-9292397 None:intergenic
CCATGAACGCGTATGATTGT+AGG 0.365663 3_4:-9292219 None:intergenic
ATCCTATCATCAATAGTTAG+TGG 0.367560 3_4:+9292916 Msa0489110:CDS
AATGATCATTCAAGGATGAT+TGG 0.370876 3_4:+9293233 Msa0489110:three_prime_UTR
CTGTGTCTGATAGCAAAATA+TGG 0.376189 3_4:-9292548 None:intergenic
CACTTGTTAATAAGATCCTT+TGG 0.378112 3_4:+9293548 Msa0489110:three_prime_UTR
CAAAAGAGGTATGTTTGTAT+AGG 0.380117 3_4:+9293449 Msa0489110:three_prime_UTR
CCTACAATCATACGCGTTCA+TGG 0.384503 3_4:+9292219 Msa0489110:CDS
ATCTCAACAACCTACATTCA+TGG 0.385612 3_4:+9290378 Msa0489110:CDS
CGCGCGGAGAGTGTGGGTTT+GGG 0.387258 3_4:-9289870 None:intergenic
TACGGGAAGAAACACAAAAT+TGG 0.387854 3_4:+9292193 Msa0489110:CDS
AAGTGTGTTGATTGAGAAAG+AGG 0.397028 3_4:+9290459 Msa0489110:CDS
AGACAGATAAATCTTAAATT+CGG 0.399115 3_4:+9292745 Msa0489110:CDS
GTGTAGTTTGTTAAGAATTG+AGG 0.399809 3_4:-9290005 None:intergenic
GAGATAGAAAAGAATAATAA+AGG 0.401596 3_4:-9290169 None:intergenic
AGCTGTGCTTCTCAGTAACT+TGG 0.405069 3_4:+9292126 Msa0489110:CDS
GTAGCTTTAATGATCATTCA+AGG 0.408360 3_4:+9293225 Msa0489110:three_prime_UTR
TGCCACTGTTCCAATGCTTA+CGG 0.411546 3_4:+9292522 Msa0489110:CDS
CAGCTTTGCTACCTTTAAGA+TGG 0.416258 3_4:+9293028 Msa0489110:CDS
AGAGTTGGAAAAGTTGTGAT+TGG 0.420716 3_4:+9293132 Msa0489110:CDS
AGAGATCCTTCACAGCCTTT+CGG 0.425140 3_4:-9292868 None:intergenic
CTATGTTTGGATTCTTAACA+TGG 0.425424 3_4:+9293345 Msa0489110:three_prime_UTR
GGATTTGGTTATTGGTTACA+AGG 0.433989 3_4:+9290553 Msa0489110:CDS
CTAGACCAACCGATGATCAT+AGG 0.439316 3_4:-9292586 None:intergenic
CCAATATCGGTTATAAAGTA+CGG 0.443188 3_4:-9292641 None:intergenic
TTAGCCGCAGGTGGAATCTT+AGG 0.445298 3_4:+9292244 Msa0489110:CDS
TTGCTACCTTTAAGATGGAT+TGG 0.445319 3_4:+9293033 Msa0489110:CDS
GAAGTAACGACGAAGCGTAT+AGG 0.450700 3_4:-9292705 None:intergenic
ATACCTCCAGTGATAATGTA+AGG 0.452475 3_4:-9290745 None:intergenic
ACCTATGTCACAGTCTGATT+CGG 0.454694 3_4:+9293062 Msa0489110:CDS
CATATAGGCGCGAAAGGGAA+TGG 0.456974 3_4:+9293166 Msa0489110:CDS
TGCTAGTTGTACAGATAGTA+AGG 0.458544 3_4:-9292332 None:intergenic
TGTAGTTTGTTAAGAATTGA+GGG 0.460996 3_4:-9290004 None:intergenic
GGGAAATTGTTAGGGTTACA+TGG 0.462413 3_4:-9289840 None:intergenic
TCTGATGTTATCTATATTGG+TGG 0.463711 3_4:+9290709 Msa0489110:CDS
GATGTATTTATTACATTGAC+CGG 0.471791 3_4:+9293477 Msa0489110:three_prime_UTR
GAGTTATAGGGAAATTGTTA+GGG 0.473558 3_4:-9289848 None:intergenic
GATGCTCTTGTAGCTGAGTA+CGG 0.473692 3_4:+9292175 Msa0489110:CDS
AGAGGAGAATAAGAAGAAGA+AGG 0.476137 3_4:+9290477 Msa0489110:CDS
GCGCGTAGAAACAGAAGAGT+TGG 0.479766 3_4:+9293117 Msa0489110:CDS
TAAATTCGGTATTCCAAATG+AGG 0.480631 3_4:+9292759 Msa0489110:CDS
ATCGGTTGGTCTAGAGTGAT+TGG 0.481020 3_4:+9292595 Msa0489110:CDS
GAGGAGAATAAGAAGAAGAA+GGG 0.482084 3_4:+9290478 Msa0489110:CDS
GAATGCTAACACGTGTCCTT+AGG 0.482139 3_4:+9293410 Msa0489110:three_prime_UTR
TCTTTGCTCGGCATTACATC+CGG 0.488077 3_4:+9292961 Msa0489110:CDS
AGCCACTAACTATTGATGAT+AGG 0.489495 3_4:-9292918 None:intergenic
ATGGTGGCTAAACCACTCTA+TGG 0.489848 3_4:+9290679 Msa0489110:CDS
GTATTCTGCTAATCTTCCTA+TGG 0.490689 3_4:+9290660 Msa0489110:CDS
TGTTGTGAACATGTTATGAT+TGG 0.491516 3_4:-9290322 None:intergenic
GTAAGCACTTCACGTGCAGC+AGG 0.495854 3_4:-9292091 None:intergenic
AATATCATGAACATGATTCT+CGG 0.506619 3_4:-9292304 None:intergenic
GTTGGATTGGCCTCTTTGCT+CGG 0.508973 3_4:+9292949 Msa0489110:CDS
ATTTCATGATCAATGTCCTA+AGG 0.509696 3_4:-9293426 None:intergenic
TGTACAAGTTGCAATATTGA+AGG 0.509895 3_4:-9290637 None:intergenic
ATCCTTTGCAACTTCAGTAA+TGG 0.515704 3_4:-9292155 None:intergenic
AGATTTAGAGTTGATGGTTG+TGG 0.516019 3_4:-9292391 None:intergenic
GATCAAACGCGCGGAGAGTG+TGG 0.519901 3_4:-9289877 None:intergenic
TTCATCACAAAAGAATCCAT+TGG 0.525638 3_4:+9290258 Msa0489110:CDS
AATATGGAGCCCGTAAGCAT+TGG 0.527587 3_4:-9292532 None:intergenic
TAATGCATATAGGCGCGAAA+GGG 0.528536 3_4:+9293161 Msa0489110:CDS
CTTTGACAATTCGCAAGGTG+TGG 0.529288 3_4:-9293370 None:intergenic
TGAAATTGCAAGATGAATCA+TGG 0.530359 3_4:-9290239 None:intergenic
TCCGAATCAGACTGTGACAT+AGG 0.530550 3_4:-9293063 None:intergenic
AAAATCCTACGCTTTGAAGC+AGG 0.534347 3_4:-9293314 None:intergenic
TTTGCGAACAGAACCGAGAA+AGG 0.535403 3_4:-9292838 None:intergenic
GATCCAACGATCCATAAAAG+TGG 0.536954 3_4:-9292496 None:intergenic
ATATAGGCGCGAAAGGGAAT+GGG 0.537383 3_4:+9293167 Msa0489110:CDS
ATTACATCCGGTGATTACTC+AGG 0.538427 3_4:+9292973 Msa0489110:CDS
GATTTGGTTATTGGTTACAA+GGG 0.538741 3_4:+9290554 Msa0489110:CDS
AAACAAATGCTTATATTGTG+TGG 0.539138 3_4:+9290532 Msa0489110:CDS
AGAATCCCTTACATTATCAC+TGG 0.541279 3_4:+9290739 Msa0489110:CDS
TATTGGTGAATGAACAATGA+AGG 0.541401 3_4:-9290094 None:intergenic
CGAACAGAACCGAGAAAGGA+AGG 0.544556 3_4:-9292834 None:intergenic
TGTGAGCTAACAATGGCATA+AGG 0.546268 3_4:-9293281 None:intergenic
TTCTACGAGGTTGTGGCGAG+TGG 0.546685 3_4:-9289948 None:intergenic
AAGAGATAGAAGAGAAGAGA+GGG 0.547427 3_4:-9290043 None:intergenic
TAGACAGTTCTACGAGGTTG+TGG 0.547909 3_4:-9289955 None:intergenic
ATTGATCATGAAATCAAAAG+AGG 0.549129 3_4:+9293435 Msa0489110:three_prime_UTR
GCGTTCATGGCATTAGCCGC+AGG 0.556853 3_4:+9292232 Msa0489110:CDS
AAAGAGATAGAAGAGAAGAG+AGG 0.557172 3_4:-9290044 None:intergenic
ATGCTCTTGTAGCTGAGTAC+GGG 0.557235 3_4:+9292176 Msa0489110:CDS
GCTGTGCTTCTCAGTAACTT+GGG 0.559091 3_4:+9292127 Msa0489110:CDS
AGGTGGAATCTTAGGCAACT+TGG 0.560798 3_4:+9292252 Msa0489110:CDS
AACAAGTGTCTTAACGACAT+TGG 0.561515 3_4:-9293533 None:intergenic
TTTCCGATGAGAAACCTGAT+AGG 0.566163 3_4:+9292670 Msa0489110:CDS
TTATGTCCGAAAGGCTGTGA+AGG 0.568883 3_4:+9292862 Msa0489110:CDS
TGTGTGTCAACCATGAATGT+AGG 0.569897 3_4:-9290388 None:intergenic
TGTTAGGGTTACATGGATCG+TGG 0.571125 3_4:-9289833 None:intergenic
CAAAGCTGATGCAAGGAAAG+AGG 0.571448 3_4:-9292893 None:intergenic
CACACCTTGCGAATTGTCAA+AGG 0.572722 3_4:+9293371 Msa0489110:three_prime_UTR
TCAAGTACTAGTCAAATTGG+AGG 0.573465 3_4:+9290508 Msa0489110:CDS
ATCCATTACTGAAGTTGCAA+AGG 0.575712 3_4:+9292153 Msa0489110:CDS
TTGGTTCGATTAATGCATAT+AGG 0.577741 3_4:+9293151 Msa0489110:CDS
AATGATCATTAAAGCTACAA+AGG 0.578447 3_4:-9293220 None:intergenic
AATCTTGATCCTATGATCAT+CGG 0.579039 3_4:+9292577 Msa0489110:CDS
TTAATGCATATAGGCGCGAA+AGG 0.580820 3_4:+9293160 Msa0489110:CDS
ATCTTAGGCAACTTGGTCGG+TGG 0.581601 3_4:+9292259 Msa0489110:CDS
GGTTTGTTAATAATCACCAA+TGG 0.584719 3_4:-9290274 None:intergenic
AATTTCTTTCTCAACAAGAG+AGG 0.586622 3_4:+9292354 Msa0489110:CDS
TACCTCCAGTGATAATGTAA+GGG 0.586765 3_4:-9290744 None:intergenic
AAGTGTCTTAACGACATTGG+AGG 0.590034 3_4:-9293530 None:intergenic
TCTTGCAACACAATCCATCT+CGG 0.591171 3_4:+9292411 Msa0489110:CDS
ACCTTGCGAATTGTCAAAGG+TGG 0.591988 3_4:+9293374 Msa0489110:three_prime_UTR
TGTAGATTGTTAAAATCCAA+AGG 0.593572 3_4:-9293564 None:intergenic
GTACAAGTTGCAATATTGAA+GGG 0.593637 3_4:-9290636 None:intergenic
ATCCAACGATCCATAAAAGT+GGG 0.595254 3_4:-9292495 None:intergenic
CAATATAGATAACATCAGAA+AGG 0.595329 3_4:-9290705 None:intergenic
TTCTGCTAATCTTCCTATGG+TGG 0.599176 3_4:+9290663 Msa0489110:CDS
GGGAAGAAACACAAAATTGG+CGG 0.599305 3_4:+9292196 Msa0489110:CDS
ACCACCTTTGACAATTCGCA+AGG 0.599655 3_4:-9293375 None:intergenic
TTCATGGCATTAGCCGCAGG+TGG 0.601108 3_4:+9292235 Msa0489110:CDS
ATAACTAGAGTACATATCAA+AGG 0.601717 3_4:-9293598 None:intergenic
GATTACTCAGGCTTGACTGT+GGG 0.603520 3_4:+9292985 Msa0489110:CDS
ATCAAACGCGCGGAGAGTGT+GGG 0.604082 3_4:-9289876 None:intergenic
TTCGCAAATTTATGTCCGAA+AGG 0.605242 3_4:+9292853 Msa0489110:CDS
GCCCGTAAGCATTGGAACAG+TGG 0.605847 3_4:-9292524 None:intergenic
ATAGGATCAAAGCTGATGCA+AGG 0.610715 3_4:-9292900 None:intergenic
TGCCTCCTGCTTCAAAGCGT+AGG 0.610870 3_4:+9293309 Msa0489110:three_prime_UTR
CAAGTACTAGTCAAATTGGA+GGG 0.619714 3_4:+9290509 Msa0489110:CDS
ATCCTACGCTTTGAAGCAGG+AGG 0.619848 3_4:-9293311 None:intergenic
TTGATCCTATGATCATCGGT+TGG 0.620203 3_4:+9292581 Msa0489110:CDS
ATCCCTTACATTATCACTGG+AGG 0.623901 3_4:+9290742 Msa0489110:CDS
AGTCAAGCCTGAGTAATCAC+CGG 0.627145 3_4:-9292980 None:intergenic
TCTGCCAAACCCGAAAAGCA+AGG 0.628364 3_4:-9292790 None:intergenic
AAGCACAGCTGCAACTAAGA+CGG 0.631279 3_4:-9292113 None:intergenic
TCAGAAAGGATTCCATAGAG+TGG 0.635792 3_4:-9290691 None:intergenic
TAGAGTGGTTTAGCCACCAT+AGG 0.639848 3_4:-9290676 None:intergenic
GCGCCTATCAGGTTTCTCAT+CGG 0.641117 3_4:-9292673 None:intergenic
CGAATATACAAGTAAAACAC+CGG 0.643726 3_4:-9293496 None:intergenic
TGATTACTCAGGCTTGACTG+TGG 0.648155 3_4:+9292984 Msa0489110:CDS
AAAGGGAATGGGAATCGCAA+AGG 0.648256 3_4:+9293178 Msa0489110:CDS
GTAGTTTGTTAAGAATTGAG+GGG 0.659264 3_4:-9290003 None:intergenic
GTTGCCTAAGATTCCACCTG+CGG 0.660068 3_4:-9292248 None:intergenic
GGAATCTTAGGCAACTTGGT+CGG 0.667089 3_4:+9292256 Msa0489110:CDS
TGAAAATTAAGAGCAAGCCA+AGG 0.671783 3_4:-9290589 None:intergenic
TAAGCACTTCACGTGCAGCA+GGG 0.681319 3_4:-9292090 None:intergenic
GGATGTAATGCCGAGCAAAG+AGG 0.684382 3_4:-9292959 None:intergenic
CAACTCGTGTGAGCTAACAA+TGG 0.700698 3_4:-9293288 None:intergenic
GCGGACGTGGATCAAACGCG+CGG 0.704486 3_4:-9289886 None:intergenic
ATCATGAACATGATTCTCGG+AGG 0.719715 3_4:-9292301 None:intergenic
TATATGTAGACAGTTCTACG+AGG 0.802559 3_4:-9289961 None:intergenic
GTTGTGAAAGTGACACTACG+AGG 0.805573 3_4:-9289917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAATAAAGGAAAAATA+GGG - chr3_4:9290162-9290181 None:intergenic 15.0%
!! AAGAATAATAAAGGAAAAAT+AGG - chr3_4:9290163-9290182 None:intergenic 15.0%
!!! TTACATTTTAATATATGATG+AGG + chr3_4:9290844-9290863 Msa0489110:intron 15.0%
!!! TGATTTTTTCTAATTATTAG+CGG - chr3_4:9290903-9290922 None:intergenic 15.0%
!! AATAATTAGAAAAAATCACA+CGG + chr3_4:9290905-9290924 Msa0489110:intron 15.0%
!! CTATTTATAAAAGAAATCAA+TGG - chr3_4:9291196-9291215 None:intergenic 15.0%
!!! GATTTTAATATCATCAATTT+TGG + chr3_4:9291287-9291306 Msa0489110:intron 15.0%
!! TAAAACCTTTATATTACATT+AGG + chr3_4:9291611-9291630 Msa0489110:intron 15.0%
!! AAAACCTTTATATTACATTA+GGG + chr3_4:9291612-9291631 Msa0489110:intron 15.0%
!!! TTTTAAGTTATTTTGTGTTT+AGG + chr3_4:9291702-9291721 Msa0489110:intron 15.0%
!! ACAAATATCAAGTTAATTAA+AGG - chr3_4:9291939-9291958 None:intergenic 15.0%
!! GAGATAGAAAAGAATAATAA+AGG - chr3_4:9290172-9290191 None:intergenic 20.0%
!!! TGTAATATAAAGGTTTTAGA+GGG - chr3_4:9291609-9291628 None:intergenic 20.0%
!!! ATGTAATATAAAGGTTTTAG+AGG - chr3_4:9291610-9291629 None:intergenic 20.0%
!!! TTGTATTTTCAATTTCTACA+CGG + chr3_4:9291782-9291801 Msa0489110:intron 20.0%
!!! CAAGGTAAATTTTATTCATA+AGG - chr3_4:9291834-9291853 None:intergenic 20.0%
!! CTTATGAATAAAATTTACCT+TGG + chr3_4:9291832-9291851 Msa0489110:intron 20.0%
!!! GTAATATTTTTATTCAACCA+AGG - chr3_4:9291852-9291871 None:intergenic 20.0%
!! TCACATAAATGAAACTTATT+TGG + chr3_4:9292015-9292034 Msa0489110:intron 20.0%
!! AGACAGATAAATCTTAAATT+CGG + chr3_4:9292745-9292764 Msa0489110:CDS 20.0%
!!! ATTTTGTTTTTCTCTATGTT+TGG + chr3_4:9293332-9293351 Msa0489110:three_prime_UTR 20.0%
!!! TGTAGTTTGTTAAGAATTGA+GGG - chr3_4:9290007-9290026 None:intergenic 25.0%
! AATAAAGGAAAAATAGGGTA+TGG - chr3_4:9290157-9290176 None:intergenic 25.0%
! TTGTGATGTTTGTGTAAATT+TGG - chr3_4:9290298-9290317 None:intergenic 25.0%
! AAACAAATGCTTATATTGTG+TGG + chr3_4:9290532-9290551 Msa0489110:CDS 25.0%
! CAATATAGATAACATCAGAA+AGG - chr3_4:9290708-9290727 None:intergenic 25.0%
! CTTTCTGATGTTATCTATAT+TGG + chr3_4:9290706-9290725 Msa0489110:CDS 25.0%
! TGATATTGAGATGTAGATAT+TGG + chr3_4:9290968-9290987 Msa0489110:intron 25.0%
! TAGGAAATTGAGAAAATCAA+AGG + chr3_4:9291120-9291139 Msa0489110:intron 25.0%
!!! AAGTGAATATCTCACTTTTT+TGG + chr3_4:9291241-9291260 Msa0489110:intron 25.0%
! ACAACCCTAATGTAATATAA+AGG - chr3_4:9291619-9291638 None:intergenic 25.0%
! TATTCATAAGGAAATTGATC+TGG - chr3_4:9291822-9291841 None:intergenic 25.0%
! AATATCATGAACATGATTCT+CGG - chr3_4:9292307-9292326 None:intergenic 25.0%
! AATGATCATTAAAGCTACAA+AGG - chr3_4:9293223-9293242 None:intergenic 25.0%
! ATTGATCATGAAATCAAAAG+AGG + chr3_4:9293435-9293454 Msa0489110:three_prime_UTR 25.0%
! GATGTATTTATTACATTGAC+CGG + chr3_4:9293477-9293496 Msa0489110:three_prime_UTR 25.0%
! TGTAGATTGTTAAAATCCAA+AGG - chr3_4:9293567-9293586 None:intergenic 25.0%
! ATAACTAGAGTACATATCAA+AGG - chr3_4:9293601-9293620 None:intergenic 25.0%
!! GATATGTACTCTAGTTATTT+TGG + chr3_4:9293603-9293622 Msa0489110:three_prime_UTR 25.0%
GAGTTATAGGGAAATTGTTA+GGG - chr3_4:9289851-9289870 None:intergenic 30.0%
!! GTAGTTTGTTAAGAATTGAG+GGG - chr3_4:9290006-9290025 None:intergenic 30.0%
!! GTGTAGTTTGTTAAGAATTG+AGG - chr3_4:9290008-9290027 None:intergenic 30.0%
TATTGGTGAATGAACAATGA+AGG - chr3_4:9290097-9290116 None:intergenic 30.0%
GATACACTCATTGTAGTTAT+TGG - chr3_4:9290114-9290133 None:intergenic 30.0%
TGAAATTGCAAGATGAATCA+TGG - chr3_4:9290242-9290261 None:intergenic 30.0%
TTCATCACAAAAGAATCCAT+TGG + chr3_4:9290258-9290277 Msa0489110:CDS 30.0%
!! GGTTTGTTAATAATCACCAA+TGG - chr3_4:9290277-9290296 None:intergenic 30.0%
TGTTGTGAACATGTTATGAT+TGG - chr3_4:9290325-9290344 None:intergenic 30.0%
GAGAGAGAATAAGAAAAAGA+AGG + chr3_4:9290426-9290445 Msa0489110:CDS 30.0%
GAATAAGAAAAAGAAGGAAG+AGG + chr3_4:9290432-9290451 Msa0489110:CDS 30.0%
AGTTCAAGTACTAGTCAAAT+TGG + chr3_4:9290505-9290524 Msa0489110:CDS 30.0%
ATGCTTATATTGTGTGGATT+TGG + chr3_4:9290538-9290557 Msa0489110:CDS 30.0%
! TATTGTGTGGATTTGGTTAT+TGG + chr3_4:9290545-9290564 Msa0489110:CDS 30.0%
! GATTTGGTTATTGGTTACAA+GGG + chr3_4:9290554-9290573 Msa0489110:CDS 30.0%
! GCTTGCTCTTAATTTTCATA+TGG + chr3_4:9290594-9290613 Msa0489110:CDS 30.0%
TATGGCTAGTAATCTCAATT+TGG + chr3_4:9290612-9290631 Msa0489110:CDS 30.0%
GTACAAGTTGCAATATTGAA+GGG - chr3_4:9290639-9290658 None:intergenic 30.0%
TGTACAAGTTGCAATATTGA+AGG - chr3_4:9290640-9290659 None:intergenic 30.0%
TCTGATGTTATCTATATTGG+TGG + chr3_4:9290709-9290728 Msa0489110:CDS 30.0%
GGTATAAATTTAACTCCACA+TGG + chr3_4:9290763-9290782 Msa0489110:intron 30.0%
TGAGATGTAGATATTGGTAA+TGG + chr3_4:9290974-9290993 Msa0489110:intron 30.0%
AATTCGTATAACTGACACTT+CGG - chr3_4:9291078-9291097 None:intergenic 30.0%
TAACATGTGGTATGTTCAAT+TGG + chr3_4:9291752-9291771 Msa0489110:intron 30.0%
GTGTATTATAAGATCACAAG+AGG + chr3_4:9291873-9291892 Msa0489110:intron 30.0%
AAAAGACATTAAGAAATGCC+AGG + chr3_4:9291906-9291925 Msa0489110:intron 30.0%
AATTTCTTTCTCAACAAGAG+AGG + chr3_4:9292354-9292373 Msa0489110:CDS 30.0%
!!! TTTTTTGATAGTTTCCGAGA+TGG - chr3_4:9292428-9292447 None:intergenic 30.0%
AACTATCAAAAAACAAGCGT+CGG + chr3_4:9292435-9292454 Msa0489110:CDS 30.0%
!! GTATTTCTTACCCACTTTTA+TGG + chr3_4:9292485-9292504 Msa0489110:CDS 30.0%
AATCTTGATCCTATGATCAT+CGG + chr3_4:9292577-9292596 Msa0489110:CDS 30.0%
! CCAATATCGGTTATAAAGTA+CGG - chr3_4:9292644-9292663 None:intergenic 30.0%
!! TCGGAAACTTTTTCCAATAT+CGG - chr3_4:9292657-9292676 None:intergenic 30.0%
!! GTTACTTCTTGATCTTGTTT+TGG + chr3_4:9292720-9292739 Msa0489110:CDS 30.0%
TAAATTCGGTATTCCAAATG+AGG + chr3_4:9292759-9292778 Msa0489110:CDS 30.0%
ATCCTATCATCAATAGTTAG+TGG + chr3_4:9292916-9292935 Msa0489110:CDS 30.0%
!!! TCAATAGTTAGTGGCTTTTT+TGG + chr3_4:9292925-9292944 Msa0489110:CDS 30.0%
! TTGGTTCGATTAATGCATAT+AGG + chr3_4:9293151-9293170 Msa0489110:CDS 30.0%
!! GTAGCTTTAATGATCATTCA+AGG + chr3_4:9293225-9293244 Msa0489110:three_prime_UTR 30.0%
AATGATCATTCAAGGATGAT+TGG + chr3_4:9293233-9293252 Msa0489110:three_prime_UTR 30.0%
CTATGTTTGGATTCTTAACA+TGG + chr3_4:9293345-9293364 Msa0489110:three_prime_UTR 30.0%
ATTTCATGATCAATGTCCTA+AGG - chr3_4:9293429-9293448 None:intergenic 30.0%
! CAAAAGAGGTATGTTTGTAT+AGG + chr3_4:9293449-9293468 Msa0489110:three_prime_UTR 30.0%
CGAATATACAAGTAAAACAC+CGG - chr3_4:9293499-9293518 None:intergenic 30.0%
! CACTTGTTAATAAGATCCTT+TGG + chr3_4:9293548-9293567 Msa0489110:three_prime_UTR 30.0%
GGAGTTATAGGGAAATTGTT+AGG - chr3_4:9289852-9289871 None:intergenic 35.0%
TATATGTAGACAGTTCTACG+AGG - chr3_4:9289964-9289983 None:intergenic 35.0%
AAGAGATAGAAGAGAAGAGA+GGG - chr3_4:9290046-9290065 None:intergenic 35.0%
AAAGAGATAGAAGAGAAGAG+AGG - chr3_4:9290047-9290066 None:intergenic 35.0%
ATCTCAACAACCTACATTCA+TGG + chr3_4:9290378-9290397 Msa0489110:CDS 35.0%
!! AAGTGTGTTGATTGAGAAAG+AGG + chr3_4:9290459-9290478 Msa0489110:CDS 35.0%
AGAGGAGAATAAGAAGAAGA+AGG + chr3_4:9290477-9290496 Msa0489110:CDS 35.0%
GAGGAGAATAAGAAGAAGAA+GGG + chr3_4:9290478-9290497 Msa0489110:CDS 35.0%
TCAAGTACTAGTCAAATTGG+AGG + chr3_4:9290508-9290527 Msa0489110:CDS 35.0%
CAAGTACTAGTCAAATTGGA+GGG + chr3_4:9290509-9290528 Msa0489110:CDS 35.0%
! GGATTTGGTTATTGGTTACA+AGG + chr3_4:9290553-9290572 Msa0489110:CDS 35.0%
! GTTATTGGTTACAAGGGTTT+AGG + chr3_4:9290560-9290579 Msa0489110:CDS 35.0%
TGAAAATTAAGAGCAAGCCA+AGG - chr3_4:9290592-9290611 None:intergenic 35.0%
GTATTCTGCTAATCTTCCTA+TGG + chr3_4:9290660-9290679 Msa0489110:CDS 35.0%
AGAATCCCTTACATTATCAC+TGG + chr3_4:9290739-9290758 Msa0489110:CDS 35.0%
! TACCTCCAGTGATAATGTAA+GGG - chr3_4:9290747-9290766 None:intergenic 35.0%
! ATACCTCCAGTGATAATGTA+AGG - chr3_4:9290748-9290767 None:intergenic 35.0%
CAGAAAAAGTAAAAGCCATG+TGG - chr3_4:9290781-9290800 None:intergenic 35.0%
GAAAGTGATTGAACGTAAAC+TGG + chr3_4:9291013-9291032 Msa0489110:intron 35.0%
TTCCTAACTACTCACTTTAG+AGG - chr3_4:9291106-9291125 None:intergenic 35.0%
TTGTTACAGATAAGGGCTAA+AGG - chr3_4:9291314-9291333 None:intergenic 35.0%
!! TCACAGCTTGTTACAGATAA+GGG - chr3_4:9291321-9291340 None:intergenic 35.0%
AGGTAACAACTCACAAGAAT+TGG + chr3_4:9291340-9291359 Msa0489110:intron 35.0%
! CAAGAATTGGAAAGTGTATG+AGG + chr3_4:9291353-9291372 Msa0489110:intron 35.0%
TCTTAACCACACATGCATTA+TGG - chr3_4:9291482-9291501 None:intergenic 35.0%
TAATGCATGTGTGGTTAAGA+TGG + chr3_4:9291482-9291501 Msa0489110:intron 35.0%
GTTAAGATGGTTCCAATTTG+CGG + chr3_4:9291495-9291514 Msa0489110:intron 35.0%
TTTGATACTGCGACAAAATG+CGG + chr3_4:9291543-9291562 Msa0489110:intron 35.0%
ATCCAAACAAAAGGAATTGC+AGG - chr3_4:9291669-9291688 None:intergenic 35.0%
!! GCAATTCCTTTTGTTTGGAT+CGG + chr3_4:9291669-9291688 Msa0489110:intron 35.0%
ACTCTTTCCATGTTAACATG+TGG + chr3_4:9291739-9291758 Msa0489110:intron 35.0%
GAACATACCACATGTTAACA+TGG - chr3_4:9291749-9291768 None:intergenic 35.0%
TTAATTAAAGGAGTTCCACC+TGG - chr3_4:9291927-9291946 None:intergenic 35.0%
! TTCTTTTGCAGATCTTTGCT+TGG + chr3_4:9292050-9292069 Msa0489110:CDS 35.0%
ATCCATTACTGAAGTTGCAA+AGG + chr3_4:9292153-9292172 Msa0489110:CDS 35.0%
ATCCTTTGCAACTTCAGTAA+TGG - chr3_4:9292158-9292177 None:intergenic 35.0%
TACGGGAAGAAACACAAAAT+TGG + chr3_4:9292193-9292212 Msa0489110:CDS 35.0%
TGCTAGTTGTACAGATAGTA+AGG - chr3_4:9292335-9292354 None:intergenic 35.0%
TCAACAAGAGAGGATTCTTT+AGG + chr3_4:9292364-9292383 Msa0489110:CDS 35.0%
!! AGATTTAGAGTTGATGGTTG+TGG - chr3_4:9292394-9292413 None:intergenic 35.0%
! GTTGCAAGATTTAGAGTTGA+TGG - chr3_4:9292400-9292419 None:intergenic 35.0%
ATCCAACGATCCATAAAAGT+GGG - chr3_4:9292498-9292517 None:intergenic 35.0%
CTGTGTCTGATAGCAAAATA+TGG - chr3_4:9292551-9292570 None:intergenic 35.0%
CCGTACTTTATAACCGATAT+TGG + chr3_4:9292641-9292660 Msa0489110:CDS 35.0%
GTTTAAACTCCTTCCTTTCT+CGG + chr3_4:9292825-9292844 Msa0489110:CDS 35.0%
TTCGCAAATTTATGTCCGAA+AGG + chr3_4:9292853-9292872 Msa0489110:CDS 35.0%
! AGCCACTAACTATTGATGAT+AGG - chr3_4:9292921-9292940 None:intergenic 35.0%
!! TTGCTACCTTTAAGATGGAT+TGG + chr3_4:9293033-9293052 Msa0489110:CDS 35.0%
ATCGAACCAATCCATCTTAA+AGG - chr3_4:9293042-9293061 None:intergenic 35.0%
AGAGTTGGAAAAGTTGTGAT+TGG + chr3_4:9293132-9293151 Msa0489110:CDS 35.0%
! ATTGTCAAAGGTGGTTTTTG+AGG + chr3_4:9293383-9293402 Msa0489110:three_prime_UTR 35.0%
AACAAGTGTCTTAACGACAT+TGG - chr3_4:9293536-9293555 None:intergenic 35.0%
GGGAAATTGTTAGGGTTACA+TGG - chr3_4:9289843-9289862 None:intergenic 40.0%
! AAGTGACACTACGAGGATTT+TGG - chr3_4:9289913-9289932 None:intergenic 40.0%
TGTGTGTCAACCATGAATGT+AGG - chr3_4:9290391-9290410 None:intergenic 40.0%
! AAGGGTTTAGGTGTTTTCCT+TGG + chr3_4:9290572-9290591 Msa0489110:CDS 40.0%
TTCTGCTAATCTTCCTATGG+TGG + chr3_4:9290663-9290682 Msa0489110:CDS 40.0%
TCAGAAAGGATTCCATAGAG+TGG - chr3_4:9290694-9290713 None:intergenic 40.0%
ATCCCTTACATTATCACTGG+AGG + chr3_4:9290742-9290761 Msa0489110:CDS 40.0%
TATGATACACAGACACTCCT+CGG - chr3_4:9290944-9290963 None:intergenic 40.0%
TTGAACGTAAACTGGTGTGT+TGG + chr3_4:9291021-9291040 Msa0489110:intron 40.0%
!! AGCCTCTAAAGTGAGTAGTT+AGG + chr3_4:9291101-9291120 Msa0489110:intron 40.0%
!! CTCACAGCTTGTTACAGATA+AGG - chr3_4:9291322-9291341 None:intergenic 40.0%
CTTATCTGTAACAAGCTGTG+AGG + chr3_4:9291320-9291339 Msa0489110:intron 40.0%
CCACACATGCATTATGGATT+GGG - chr3_4:9291476-9291495 None:intergenic 40.0%
ACCACACATGCATTATGGAT+TGG - chr3_4:9291477-9291496 None:intergenic 40.0%
CTGAAGTAGGTTATCAGTTG+CGG - chr3_4:9291645-9291664 None:intergenic 40.0%
! GACCTGCAATTCCTTTTGTT+TGG + chr3_4:9291664-9291683 Msa0489110:intron 40.0%
ATCAGACCGATCCAAACAAA+AGG - chr3_4:9291678-9291697 None:intergenic 40.0%
AGACATTAAGAAATGCCAGG+TGG + chr3_4:9291909-9291928 Msa0489110:intron 40.0%
GCAAAGATCTGCAAAAGAAC+TGG - chr3_4:9292049-9292068 None:intergenic 40.0%
GGGAAGAAACACAAAATTGG+CGG + chr3_4:9292196-9292215 Msa0489110:CDS 40.0%
ATCATGAACATGATTCTCGG+AGG - chr3_4:9292304-9292323 None:intergenic 40.0%
TCTTGCAACACAATCCATCT+CGG + chr3_4:9292411-9292430 Msa0489110:CDS 40.0%
!! TACCCACTTTTATGGATCGT+TGG + chr3_4:9292493-9292512 Msa0489110:CDS 40.0%
GATCCAACGATCCATAAAAG+TGG - chr3_4:9292499-9292518 None:intergenic 40.0%
TTGATCCTATGATCATCGGT+TGG + chr3_4:9292581-9292600 Msa0489110:CDS 40.0%
TTTCCGATGAGAAACCTGAT+AGG + chr3_4:9292670-9292689 Msa0489110:CDS 40.0%
ATAGGATCAAAGCTGATGCA+AGG - chr3_4:9292903-9292922 None:intergenic 40.0%
!!! GTTAGTGGCTTTTTTGGTGT+TGG + chr3_4:9292931-9292950 Msa0489110:CDS 40.0%
!!! TGGCTTTTTTGGTGTTGGAT+TGG + chr3_4:9292936-9292955 Msa0489110:CDS 40.0%
ATTACATCCGGTGATTACTC+AGG + chr3_4:9292973-9292992 Msa0489110:CDS 40.0%
! CAGCTTTGCTACCTTTAAGA+TGG + chr3_4:9293028-9293047 Msa0489110:CDS 40.0%
ACCTATGTCACAGTCTGATT+CGG + chr3_4:9293062-9293081 Msa0489110:CDS 40.0%
TTAATGCATATAGGCGCGAA+AGG + chr3_4:9293160-9293179 Msa0489110:CDS 40.0%
TAATGCATATAGGCGCGAAA+GGG + chr3_4:9293161-9293180 Msa0489110:CDS 40.0%
TGTGAGCTAACAATGGCATA+AGG - chr3_4:9293284-9293303 None:intergenic 40.0%
!! AAAATCCTACGCTTTGAAGC+AGG - chr3_4:9293317-9293336 None:intergenic 40.0%
AAGTGTCTTAACGACATTGG+AGG - chr3_4:9293533-9293552 None:intergenic 40.0%
TGTTAGGGTTACATGGATCG+TGG - chr3_4:9289836-9289855 None:intergenic 45.0%
GTGTGGGTTTGGGAGTTATA+GGG - chr3_4:9289863-9289882 None:intergenic 45.0%
AGTGTGGGTTTGGGAGTTAT+AGG - chr3_4:9289864-9289883 None:intergenic 45.0%
!! ACACTACGAGGATTTTGGAG+CGG - chr3_4:9289908-9289927 None:intergenic 45.0%
GTTGTGAAAGTGACACTACG+AGG - chr3_4:9289920-9289939 None:intergenic 45.0%
TAGACAGTTCTACGAGGTTG+TGG - chr3_4:9289958-9289977 None:intergenic 45.0%
TAGAGTGGTTTAGCCACCAT+AGG - chr3_4:9290679-9290698 None:intergenic 45.0%
ATGGTGGCTAAACCACTCTA+TGG + chr3_4:9290679-9290698 Msa0489110:CDS 45.0%
!! TAGTAGTCACTGACTCTGCT+TGG - chr3_4:9291412-9291431 None:intergenic 45.0%
CCCAATCCATAATGCATGTG+TGG + chr3_4:9291473-9291492 Msa0489110:intron 45.0%
AACTGCAGTTACGGCTGTAT+TGG - chr3_4:9291570-9291589 None:intergenic 45.0%
!!! GTTTTAGAGGGCACTCAATG+GGG - chr3_4:9291597-9291616 None:intergenic 45.0%
!!! GGTTTTAGAGGGCACTCAAT+GGG - chr3_4:9291598-9291617 None:intergenic 45.0%
!!! AGGTTTTAGAGGGCACTCAA+TGG - chr3_4:9291599-9291618 None:intergenic 45.0%
! AGGAATTGCAGGTCTGAAGT+AGG - chr3_4:9291658-9291677 None:intergenic 45.0%
AAGCACAGCTGCAACTAAGA+CGG - chr3_4:9292116-9292135 None:intergenic 45.0%
AGCTGTGCTTCTCAGTAACT+TGG + chr3_4:9292126-9292145 Msa0489110:CDS 45.0%
GCTGTGCTTCTCAGTAACTT+GGG + chr3_4:9292127-9292146 Msa0489110:CDS 45.0%
GATGCTCTTGTAGCTGAGTA+CGG + chr3_4:9292175-9292194 Msa0489110:CDS 45.0%
ATGCTCTTGTAGCTGAGTAC+GGG + chr3_4:9292176-9292195 Msa0489110:CDS 45.0%
CCATGAACGCGTATGATTGT+AGG - chr3_4:9292222-9292241 None:intergenic 45.0%
CCTACAATCATACGCGTTCA+TGG + chr3_4:9292219-9292238 Msa0489110:CDS 45.0%
AGGTGGAATCTTAGGCAACT+TGG + chr3_4:9292252-9292271 Msa0489110:CDS 45.0%
GGAATCTTAGGCAACTTGGT+CGG + chr3_4:9292256-9292275 Msa0489110:CDS 45.0%
!!! ACAAGCGTCGGATCTTTTTG+TGG + chr3_4:9292447-9292466 Msa0489110:CDS 45.0%
TGCCACTGTTCCAATGCTTA+CGG + chr3_4:9292522-9292541 Msa0489110:CDS 45.0%
AATATGGAGCCCGTAAGCAT+TGG - chr3_4:9292535-9292554 None:intergenic 45.0%
CTAGACCAACCGATGATCAT+AGG - chr3_4:9292589-9292608 None:intergenic 45.0%
!! ATCGGTTGGTCTAGAGTGAT+TGG + chr3_4:9292595-9292614 Msa0489110:CDS 45.0%
! GGTCAGTTGATGCTTCTTTC+AGG + chr3_4:9292616-9292635 Msa0489110:CDS 45.0%
GAAGTAACGACGAAGCGTAT+AGG - chr3_4:9292708-9292727 None:intergenic 45.0%
TTTGCGAACAGAACCGAGAA+AGG - chr3_4:9292841-9292860 None:intergenic 45.0%
TTATGTCCGAAAGGCTGTGA+AGG + chr3_4:9292862-9292881 Msa0489110:CDS 45.0%
AGAGATCCTTCACAGCCTTT+CGG - chr3_4:9292871-9292890 None:intergenic 45.0%
CAAAGCTGATGCAAGGAAAG+AGG - chr3_4:9292896-9292915 None:intergenic 45.0%
TCTTTGCTCGGCATTACATC+CGG + chr3_4:9292961-9292980 Msa0489110:CDS 45.0%
AGTCAAGCCTGAGTAATCAC+CGG - chr3_4:9292983-9293002 None:intergenic 45.0%
TGATTACTCAGGCTTGACTG+TGG + chr3_4:9292984-9293003 Msa0489110:CDS 45.0%
GATTACTCAGGCTTGACTGT+GGG + chr3_4:9292985-9293004 Msa0489110:CDS 45.0%
TCCGAATCAGACTGTGACAT+AGG - chr3_4:9293066-9293085 None:intergenic 45.0%
ATATAGGCGCGAAAGGGAAT+GGG + chr3_4:9293167-9293186 Msa0489110:CDS 45.0%
AAAGGGAATGGGAATCGCAA+AGG + chr3_4:9293178-9293197 Msa0489110:CDS 45.0%
CAACTCGTGTGAGCTAACAA+TGG - chr3_4:9293291-9293310 None:intergenic 45.0%
CTTTGACAATTCGCAAGGTG+TGG - chr3_4:9293373-9293392 None:intergenic 45.0%
CACACCTTGCGAATTGTCAA+AGG + chr3_4:9293371-9293390 Msa0489110:three_prime_UTR 45.0%
ACCTTGCGAATTGTCAAAGG+TGG + chr3_4:9293374-9293393 Msa0489110:three_prime_UTR 45.0%
ACCACCTTTGACAATTCGCA+AGG - chr3_4:9293378-9293397 None:intergenic 45.0%
!! GTCAAAGGTGGTTTTTGAGG+AGG + chr3_4:9293386-9293405 Msa0489110:three_prime_UTR 45.0%
GAATGCTAACACGTGTCCTT+AGG + chr3_4:9293410-9293429 Msa0489110:three_prime_UTR 45.0%
ACGGTTCACATGCTAATCCG+AGG + chr3_4:9290924-9290943 Msa0489110:intron 50.0%
! CGTAAACTGGTGTGTTGGTG+TGG + chr3_4:9291026-9291045 Msa0489110:intron 50.0%
ATGGTTCCAATTTGCGGCCA+CGG + chr3_4:9291501-9291520 Msa0489110:intron 50.0%
TGGGGCAACAACTGCAGTTA+CGG - chr3_4:9291579-9291598 None:intergenic 50.0%
TAAGCACTTCACGTGCAGCA+GGG - chr3_4:9292093-9292112 None:intergenic 50.0%
TTAGCCGCAGGTGGAATCTT+AGG + chr3_4:9292244-9292263 Msa0489110:CDS 50.0%
GTTGCCTAAGATTCCACCTG+CGG - chr3_4:9292251-9292270 None:intergenic 50.0%
ATCTTAGGCAACTTGGTCGG+TGG + chr3_4:9292259-9292278 Msa0489110:CDS 50.0%
GCCACTGTTCCAATGCTTAC+GGG + chr3_4:9292523-9292542 Msa0489110:CDS 50.0%
GCGCCTATCAGGTTTCTCAT+CGG - chr3_4:9292676-9292695 None:intergenic 50.0%
CAAGGAGCGAACACCTCATT+TGG - chr3_4:9292775-9292794 None:intergenic 50.0%
!! GGTGTTCGCTCCTTGCTTTT+CGG + chr3_4:9292780-9292799 Msa0489110:CDS 50.0%
!! GTGTTCGCTCCTTGCTTTTC+GGG + chr3_4:9292781-9292800 Msa0489110:CDS 50.0%
TCTGCCAAACCCGAAAAGCA+AGG - chr3_4:9292793-9292812 None:intergenic 50.0%
CGAACAGAACCGAGAAAGGA+AGG - chr3_4:9292837-9292856 None:intergenic 50.0%
!! GTTGGATTGGCCTCTTTGCT+CGG + chr3_4:9292949-9292968 Msa0489110:CDS 50.0%
GGATGTAATGCCGAGCAAAG+AGG - chr3_4:9292962-9292981 None:intergenic 50.0%
GCGCGTAGAAACAGAAGAGT+TGG + chr3_4:9293117-9293136 Msa0489110:CDS 50.0%
CATATAGGCGCGAAAGGGAA+TGG + chr3_4:9293166-9293185 Msa0489110:CDS 50.0%
!! ATCCTACGCTTTGAAGCAGG+AGG - chr3_4:9293314-9293333 None:intergenic 50.0%
! ATCAAACGCGCGGAGAGTGT+GGG - chr3_4:9289879-9289898 None:intergenic 55.0%
TTCTACGAGGTTGTGGCGAG+TGG - chr3_4:9289951-9289970 None:intergenic 55.0%
! CTGGTGTGTTGGTGTGGTGT+CGG + chr3_4:9291032-9291051 Msa0489110:intron 55.0%
GTAAGCACTTCACGTGCAGC+AGG - chr3_4:9292094-9292113 None:intergenic 55.0%
TTCATGGCATTAGCCGCAGG+TGG + chr3_4:9292235-9292254 Msa0489110:CDS 55.0%
!! GCCCGTAAGCATTGGAACAG+TGG - chr3_4:9292527-9292546 None:intergenic 55.0%
!!! CGCTCCTTGCTTTTCGGGTT+TGG + chr3_4:9292786-9292805 Msa0489110:CDS 55.0%
TGCCTCCTGCTTCAAAGCGT+AGG + chr3_4:9293309-9293328 Msa0489110:three_prime_UTR 55.0%
GATCAAACGCGCGGAGAGTG+TGG - chr3_4:9289880-9289899 None:intergenic 60.0%
!!! CGAGGATTTTGGAGCGGACG+TGG - chr3_4:9289902-9289921 None:intergenic 60.0%
CCAATTTGCGGCCACGGTTG+CGG + chr3_4:9291507-9291526 Msa0489110:intron 60.0%
GCGTTCATGGCATTAGCCGC+AGG + chr3_4:9292232-9292251 Msa0489110:CDS 60.0%
GGATCTGCACTGCGCCTATC+AGG - chr3_4:9292687-9292706 None:intergenic 60.0%
! CGCGCGGAGAGTGTGGGTTT+GGG - chr3_4:9289873-9289892 None:intergenic 65.0%
! ACGCGCGGAGAGTGTGGGTT+TGG - chr3_4:9289874-9289893 None:intergenic 65.0%
GCGGACGTGGATCAAACGCG+CGG - chr3_4:9289889-9289908 None:intergenic 65.0%
CCGCAACCGTGGCCGCAAAT+TGG - chr3_4:9291510-9291529 None:intergenic 65.0%
GCGCAGCATAACCGCAACCG+TGG - chr3_4:9291521-9291540 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 9289810 9293653 9289810 ID=Msa0489110;Name=Msa0489110
chr3_4 mRNA 9289810 9293653 9289810 ID=Msa0489110-mRNA-1;Parent=Msa0489110;Name=Msa0489110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=431|1|1|1|1|1|2|450|558
chr3_4 exon 9289810 9290763 9289810 ID=Msa0489110-mRNA-1:exon:3059;Parent=Msa0489110-mRNA-1
chr3_4 exon 9292050 9293653 9292050 ID=Msa0489110-mRNA-1:exon:3060;Parent=Msa0489110-mRNA-1
chr3_4 five_prime_UTR 9289810 9290240 9289810 ID=Msa0489110-mRNA-1:five_prime_utr;Parent=Msa0489110-mRNA-1
chr3_4 CDS 9290241 9290763 9290241 ID=Msa0489110-mRNA-1:cds;Parent=Msa0489110-mRNA-1
chr3_4 CDS 9292050 9293203 9292050 ID=Msa0489110-mRNA-1:cds;Parent=Msa0489110-mRNA-1
chr3_4 three_prime_UTR 9293204 9293653 9293204 ID=Msa0489110-mRNA-1:three_prime_utr;Parent=Msa0489110-mRNA-1
Gene Sequence

>Msa0489110

ATGATTCATCTTGCAATTTCATCACAAAAGAATCCATTGGTGATTATTAACAAACCAAATTTACACAAACATCACAAAAGACCAATCATAACATGTTCACAACATCACAAGAATTCAAGAAACTTCATTGAGAAACAATCTCAACAACCTACATTCATGGTTGACACACATAAAAATTTTGTTGTGAGAGAGAATAAGAAAAAGAAGGAAGAGGAGAAAAGTGTGTTGATTGAGAAAGAGGAGAATAAGAAGAAGAAGGGTTCAAGTTCAAGTACTAGTCAAATTGGAGGGAAACAAATGCTTATATTGTGTGGATTTGGTTATTGGTTACAAGGGTTTAGGTGTTTTCCTTGGCTTGCTCTTAATTTTCATATGGCTAGTAATCTCAATTTGGACCCTTCAATATTGCAACTTGTACAGTATTCTGCTAATCTTCCTATGGTGGCTAAACCACTCTATGGAATCCTTTCTGATGTTATCTATATTGGTGGTGCTCACAGAATCCCTTACATTATCACTGGAGTTCTTTTGCAGATCTTTGCTTGGAATTATCTAGCATTCATCCCTGCTGCACGTGAAGTGCTTACCGTCTTAGTTGCAGCTGTGCTTCTCAGTAACTTGGGAGCATCCATTACTGAAGTTGCAAAGGATGCTCTTGTAGCTGAGTACGGGAAGAAACACAAAATTGGCGGCCTACAATCATACGCGTTCATGGCATTAGCCGCAGGTGGAATCTTAGGCAACTTGGTCGGTGGTTATTTTCTACTGAAACTGCCTCCGAGAATCATGTTCATGATATTTTCAGCCTTACTATCTGTACAACTAGCAATTTCTTTCTCAACAAGAGAGGATTCTTTAGGCATACCACAACCATCAACTCTAAATCTTGCAACACAATCCATCTCGGAAACTATCAAAAAACAAGCGTCGGATCTTTTTGTGGCTATCAGCGACAAAAGTATTTCTTACCCACTTTTATGGATCGTTGGATCAATTGCCACTGTTCCAATGCTTACGGGCTCCATATTTTGCTATCAGACACAGTGTCTAAATCTTGATCCTATGATCATCGGTTGGTCTAGAGTGATTGGTCAGTTGATGCTTCTTTCAGGAACCGTACTTTATAACCGATATTGGAAAAAGTTTCCGATGAGAAACCTGATAGGCGCAGTGCAGATCCTATACGCTTCGTCGTTACTTCTTGATCTTGTTTTGGTTAGACAGATAAATCTTAAATTCGGTATTCCAAATGAGGTGTTCGCTCCTTGCTTTTCGGGTTTGGCAGAAGTTCTAGCACAGTTTAAACTCCTTCCTTTCTCGGTTCTGTTCGCAAATTTATGTCCGAAAGGCTGTGAAGGATCTCTCACCTCTTTCCTTGCATCAGCTTTGATCCTATCATCAATAGTTAGTGGCTTTTTTGGTGTTGGATTGGCCTCTTTGCTCGGCATTACATCCGGTGATTACTCAGGCTTGACTGTGGGAATTCTTATACAGTTTGTCGCAGCTTTGCTACCTTTAAGATGGATTGGTTCGATACCTATGTCACAGTCTGATTCGGAGAAGCAAAGAAGAAAAAGTATGAGTAGAAGAGCGCGTAGAAACAGAAGAGTTGGAAAAGTTGTGATTGGTTCGATTAATGCATATAGGCGCGAAAGGGAATGGGAATCGCAAAGGTGA
Protein sequence

>Msa0489110

MIHLAISSQKNPLVIINKPNLHKHHKRPIITCSQHHKNSRNFIEKQSQQPTFMVDTHKNFVVRENKKKKEEEKSVLIEKEENKKKKGSSSSTSQIGGKQMLILCGFGYWLQGFRCFPWLALNFHMASNLNLDPSILQLVQYSANLPMVAKPLYGILSDVIYIGGAHRIPYIITGVLLQIFAWNYLAFIPAAREVLTVLVAAVLLSNLGASITEVAKDALVAEYGKKHKIGGLQSYAFMALAAGGILGNLVGGYFLLKLPPRIMFMIFSALLSVQLAISFSTREDSLGIPQPSTLNLATQSISETIKKQASDLFVAISDKSISYPLLWIVGSIATVPMLTGSIFCYQTQCLNLDPMIIGWSRVIGQLMLLSGTVLYNRYWKKFPMRNLIGAVQILYASSLLLDLVLVRQINLKFGIPNEVFAPCFSGLAEVLAQFKLLPFSVLFANLCPKGCEGSLTSFLASALILSSIVSGFFGVGLASLLGITSGDYSGLTVGILIQFVAALLPLRWIGSIPMSQSDSEKQRRKSMSRRARRNRRVGKVVIGSINAYRREREWESQR*