Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353630 | XP_039684092.1 | 84.274 | 248 | 16 | 2 | 63 | 288 | 33 | 279 | 3.78e-147 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353630 | A0A396J752 | 58.333 | 348 | 117 | 7 | 54 | 380 | 122 | 462 | 1.35e-127 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0353630 | Msa0397750 | 0.814719 | 1.335370e-51 | -8.615850e-47 |
| Msa0353630 | Msa0584860 | 0.810014 | 1.423082e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353630 | MtrunA17_Chr2g0305311 | 58.333 | 348 | 117 | 7 | 54 | 380 | 122 | 462 | 2.60e-131 | 385 |
| Msa0353630 | MtrunA17_Chr6g0467141 | 86.885 | 122 | 16 | 0 | 257 | 378 | 1 | 122 | 1.45e-71 | 220 |
| Msa0353630 | MtrunA17_Chr2g0309021 | 29.107 | 347 | 193 | 11 | 75 | 371 | 163 | 506 | 3.56e-35 | 135 |
| Msa0353630 | MtrunA17_Chr3g0086061 | 76.190 | 42 | 8 | 1 | 337 | 378 | 1 | 40 | 2.16e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353630 | AT1G40087.1 | 25.215 | 349 | 222 | 8 | 47 | 361 | 2 | 345 | 3.44e-32 | 125 |
| Msa0353630 | AT3G30200.1 | 27.074 | 229 | 156 | 3 | 141 | 361 | 240 | 465 | 9.69e-24 | 103 |
Find 106 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTATTAGCAAATTATT+TGG | 0.134917 | 3_1:+23848691 | Msa0353630:CDS |
| GTGAATCTCATGTTAGGTTT+TGG | 0.170799 | 3_1:-23845525 | None:intergenic |
| TGCTTGCATTTGCATTAATA+AGG | 0.210712 | 3_1:-23849998 | None:intergenic |
| TGCTGGATATGTCCGTTCTA+TGG | 0.260226 | 3_1:+23849822 | Msa0353630:CDS |
| ATTTAAAGATTTCCCGATAA+TGG | 0.263080 | 3_1:+23848730 | Msa0353630:CDS |
| TGTTCAGAGCACTGATTGTT+GGG | 0.322312 | 3_1:-23845598 | None:intergenic |
| AGCAAATTATTTGGGCCAAT+TGG | 0.338084 | 3_1:+23848700 | Msa0353630:CDS |
| TCTCATCTTTCAACCATTAT+CGG | 0.344692 | 3_1:-23848743 | None:intergenic |
| GAAGCATTTGCCAATGTGTT+TGG | 0.345306 | 3_1:+23849790 | Msa0353630:CDS |
| AGGTTGTTAAAGCTCAGATT+TGG | 0.353549 | 3_1:+23846506 | Msa0353630:five_prime_UTR |
| GTCATTATCCTGGTTCCATT+TGG | 0.356509 | 3_1:-23848629 | None:intergenic |
| CTTTAAATTGCCTTGCCAAT+TGG | 0.357012 | 3_1:-23848715 | None:intergenic |
| AAATTATTAGCAAATTATTT+GGG | 0.372951 | 3_1:+23848692 | Msa0353630:CDS |
| TGTTTAAGAAACATTACAAA+TGG | 0.399446 | 3_1:+23848999 | Msa0353630:CDS |
| GCTGGATATGTCCGTTCTAT+GGG | 0.400623 | 3_1:+23849823 | Msa0353630:CDS |
| GGTTGTTAAAGCTCAGATTT+GGG | 0.406299 | 3_1:+23846507 | Msa0353630:five_prime_UTR |
| AAGCATTCACGTTGATGATA+AGG | 0.409042 | 3_1:+23846486 | Msa0353630:five_prime_UTR |
| AGCCGAGATTGATTCTCTTA+AGG | 0.409612 | 3_1:+23849936 | Msa0353630:CDS |
| TACTTGTAGGAATTGAGATA+TGG | 0.409851 | 3_1:+23849414 | Msa0353630:intron |
| CATCCTTCCATTTCTTTCCA+AGG | 0.410334 | 3_1:-23848964 | None:intergenic |
| ACATCAACCTCCCAGTATCT+TGG | 0.412857 | 3_1:-23848442 | None:intergenic |
| TCTCTAGCCTTGGAAAGAAA+TGG | 0.416906 | 3_1:+23848957 | Msa0353630:CDS |
| ATAAGATGAGTGAGGGGAAA+AGG | 0.420824 | 3_1:-23847940 | None:intergenic |
| AAGTTTGTTGTTGATGATGA+TGG | 0.421434 | 3_1:+23848914 | Msa0353630:CDS |
| GTTTGTCTGAGATGAAGATT+TGG | 0.426766 | 3_1:-23845481 | None:intergenic |
| AATTATGTTATCTCTAGCCT+TGG | 0.431210 | 3_1:+23848947 | Msa0353630:CDS |
| TTCATTGATAAATCTTCCCT+TGG | 0.440878 | 3_1:-23849484 | None:intergenic |
| CTCATCTTTCAACCATTATC+GGG | 0.450091 | 3_1:-23848742 | None:intergenic |
| TCTCTCAATCGGTGGTCAAA+AGG | 0.453501 | 3_1:+23845637 | Msa0353630:five_prime_UTR |
| TCTCTCAATCGGTGGTCAAA+AGG | 0.453501 | 3_1:+23845671 | Msa0353630:five_prime_UTR |
| TGCTCACTCACTCTCTCAAT+CGG | 0.455464 | 3_1:+23845626 | Msa0353630:five_prime_UTR |
| GCAGATTGCCCCACCGGTTG+AGG | 0.457756 | 3_1:-23848668 | None:intergenic |
| CAATCAGTGCTCTGAACAAT+CGG | 0.461980 | 3_1:+23845603 | Msa0353630:five_prime_UTR |
| ATGGAATGATGTTCCTCAAC+CGG | 0.463679 | 3_1:+23848655 | Msa0353630:CDS |
| GAGTCAGTTCCTAGTGTATG+AGG | 0.463717 | 3_1:-23849248 | None:intergenic |
| TATGTCCGTTCTATGGGGCT+TGG | 0.464477 | 3_1:+23849829 | Msa0353630:CDS |
| ATGTGGCGGGTCATATTTCA+AGG | 0.468529 | 3_1:+23848570 | Msa0353630:CDS |
| TTGTTCAGAGCACTGATTGT+TGG | 0.468939 | 3_1:-23845599 | None:intergenic |
| TGAGGGGAAAAGGGACCTAC+TGG | 0.471849 | 3_1:-23847930 | None:intergenic |
| GTTTAAGAAACATTACAAAT+GGG | 0.473095 | 3_1:+23849000 | Msa0353630:CDS |
| TTCAGAAGTTGATGTCTTGA+AGG | 0.473713 | 3_1:+23849966 | Msa0353630:CDS |
| GAGGTGTCTCGTGTGGGTGG+TGG | 0.476635 | 3_1:-23848252 | None:intergenic |
| CAAATGGGAACTCACATTAG+AGG | 0.477412 | 3_1:+23849015 | Msa0353630:CDS |
| TGCTCACTCACTCTCTCAAT+CGG | 0.487900 | 3_1:+23845660 | Msa0353630:five_prime_UTR |
| GATAGTCCGTACCTTGGCTC+TGG | 0.496615 | 3_1:+23848325 | Msa0353630:CDS |
| AATTTAGCAGATTGCCCCAC+CGG | 0.499755 | 3_1:-23848674 | None:intergenic |
| TGATCTGGGTGAATAAAAGT+TGG | 0.508075 | 3_1:-23849058 | None:intergenic |
| GATTGATTCTCTTAAGGAGA+AGG | 0.517958 | 3_1:+23849942 | Msa0353630:CDS |
| GTTCAGAGCACTGATTGTTG+GGG | 0.519444 | 3_1:-23845597 | None:intergenic |
| TAAGATGAGTGAGGGGAAAA+GGG | 0.526912 | 3_1:-23847939 | None:intergenic |
| GTTATACAAAGACAAGTGTA+AGG | 0.530832 | 3_1:-23850113 | None:intergenic |
| ACAAAATTCTAGAGACAAAG+AGG | 0.537706 | 3_1:+23850020 | Msa0353630:CDS |
| GGGATACTGCTGGTCAAGAA+AGG | 0.539914 | 3_1:+23846527 | Msa0353630:five_prime_UTR |
| ATGGAGGTGTCTCGTGTGGG+TGG | 0.542597 | 3_1:-23848255 | None:intergenic |
| GTGCTTGAAGAATCTCCAAA+TGG | 0.542925 | 3_1:+23848614 | Msa0353630:CDS |
| ATTTGCCAATGTGTTTGGAA+AGG | 0.548585 | 3_1:+23849795 | Msa0353630:CDS |
| ATTATTTGGGCCAATTGGCA+AGG | 0.549492 | 3_1:+23848705 | Msa0353630:CDS |
| GATATGGTCGAGAATATAGC+AGG | 0.553453 | 3_1:+23849430 | Msa0353630:CDS |
| TTGTTATTTGTTAGATGTGG+CGG | 0.554708 | 3_1:+23848556 | Msa0353630:intron |
| CTCCTTAAGAGAATCAATCT+CGG | 0.554776 | 3_1:-23849938 | None:intergenic |
| GGCGATGGAGGTGTCTCGTG+TGG | 0.558685 | 3_1:-23848259 | None:intergenic |
| TGCGATCAGAAAAGATGAGT+TGG | 0.559494 | 3_1:+23849274 | Msa0353630:CDS |
| ATTCCATCGAGTCATTATCC+TGG | 0.568967 | 3_1:-23848639 | None:intergenic |
| GCTCAGATTTGGGATACTGC+TGG | 0.571910 | 3_1:+23846517 | Msa0353630:five_prime_UTR |
| GCGATGGAGGTGTCTCGTGT+GGG | 0.578755 | 3_1:-23848258 | None:intergenic |
| TAGGAGGAAGGCTGAACAAG+TGG | 0.584537 | 3_1:+23849102 | Msa0353630:CDS |
| GATTTATCAATGAATATGCA+AGG | 0.585878 | 3_1:+23849493 | Msa0353630:CDS |
| AAGAATCTCCAAATGGAACC+AGG | 0.590266 | 3_1:+23848621 | Msa0353630:CDS |
| GAATGATGTTCCTCAACCGG+TGG | 0.591938 | 3_1:+23848658 | Msa0353630:CDS |
| TGTTATTTGTTAGATGTGGC+GGG | 0.593754 | 3_1:+23848557 | Msa0353630:intron |
| TCATCTCCAGAGCCAAGGTA+CGG | 0.595150 | 3_1:-23848331 | None:intergenic |
| AATGATGTTCCTCAACCGGT+GGG | 0.604945 | 3_1:+23848659 | Msa0353630:CDS |
| ACACATGATAGTCCGTACCT+TGG | 0.608571 | 3_1:+23848319 | Msa0353630:CDS |
| GTGTTTGGAAAGGAACATGC+TGG | 0.608959 | 3_1:+23849805 | Msa0353630:CDS |
| GAACCAGGATAATGACTCGA+TGG | 0.613463 | 3_1:+23848636 | Msa0353630:CDS |
| CTTGGAAAGAAATGGAAGGA+TGG | 0.617605 | 3_1:+23848965 | Msa0353630:CDS |
| TGTTTCGCATAAAGATGCCA+AGG | 0.617713 | 3_1:+23849467 | Msa0353630:CDS |
| GTCACATGTGTAGGCGATGG+AGG | 0.618381 | 3_1:-23848271 | None:intergenic |
| ATATGGTCGAGAATATAGCA+GGG | 0.620430 | 3_1:+23849431 | Msa0353630:CDS |
| TTCAGAGCACTGATTGTTGG+GGG | 0.621371 | 3_1:-23845596 | None:intergenic |
| TAGCCTTGGAAAGAAATGGA+AGG | 0.623697 | 3_1:+23848961 | Msa0353630:CDS |
| TTATGCCAAGCCCCATAGAA+CGG | 0.625942 | 3_1:-23849834 | None:intergenic |
| TGTGAAGGTGTCACATGTGT+AGG | 0.626985 | 3_1:-23848280 | None:intergenic |
| ATGTTCCTTTCCAAACACAT+TGG | 0.633980 | 3_1:-23849800 | None:intergenic |
| GAGATGAAGATTTGGTCAGT+GGG | 0.635089 | 3_1:-23845473 | None:intergenic |
| GGTGTCACATGTGTAGGCGA+TGG | 0.637531 | 3_1:-23848274 | None:intergenic |
| TTTGTGAGCATCGATTGTTG+GGG | 0.637988 | 3_1:-23845567 | None:intergenic |
| GAGCGACTAGAGATTCGAGA+TGG | 0.640237 | 3_1:-23849859 | None:intergenic |
| CATCATCATCTCCAGAGCCA+AGG | 0.642384 | 3_1:-23848336 | None:intergenic |
| TCACTCACTCTCTCAATCGG+TGG | 0.642539 | 3_1:+23845629 | Msa0353630:five_prime_UTR |
| TCACTCACTCTCTCAATCGG+TGG | 0.642539 | 3_1:+23845663 | Msa0353630:five_prime_UTR |
| ATTAGCCTCGATGGAAGACG+AGG | 0.645771 | 3_1:-23849893 | None:intergenic |
| GTTTCGCATAAAGATGCCAA+GGG | 0.648325 | 3_1:+23849468 | Msa0353630:CDS |
| ATTTATCAATGAATATGCAA+GGG | 0.649599 | 3_1:+23849494 | Msa0353630:CDS |
| CTGGATATGTCCGTTCTATG+GGG | 0.651362 | 3_1:+23849824 | Msa0353630:CDS |
| TGAGATGAAGATTTGGTCAG+TGG | 0.653231 | 3_1:-23845474 | None:intergenic |
| TTGTGAGCATCGATTGTTGG+GGG | 0.655936 | 3_1:-23845566 | None:intergenic |
| GGGGAAAAGGGACCTACTGG+TGG | 0.659636 | 3_1:-23847927 | None:intergenic |
| TATGGTCGAGAATATAGCAG+GGG | 0.665151 | 3_1:+23849432 | Msa0353630:CDS |
| CCAACCAGATCACCACCAGT+AGG | 0.669740 | 3_1:+23847915 | Msa0353630:intron |
| AGTAGCGAATTCAACACCAA+TGG | 0.674174 | 3_1:-23846461 | None:intergenic |
| GTTGTCACATGTGTATGTGA+AGG | 0.676465 | 3_1:-23848295 | None:intergenic |
| TTCAAGGAGACATTTAACAG+TGG | 0.703478 | 3_1:+23848586 | Msa0353630:CDS |
| ATTAGCCTCGTCTTCCATCG+AGG | 0.707505 | 3_1:+23849888 | Msa0353630:CDS |
| AAAGAAACCAAGATACTGGG+AGG | 0.708954 | 3_1:+23848435 | Msa0353630:CDS |
| ATGATGTTCCTCAACCGGTG+GGG | 0.710243 | 3_1:+23848660 | Msa0353630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAATTATTTTGATTTTA+TGG | - | chr3_1:23845879-23845898 | None:intergenic | 10.0% |
| !! | AGAGAATATAAAAATAAAAA+TGG | - | chr3_1:23845924-23845943 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCAAATTATTAG+CGG | + | chr3_1:23847283-23847302 | Msa0353630:intron | 10.0% |
| !! | TAAATTATTAGCAAATTATT+TGG | + | chr3_1:23848691-23848710 | Msa0353630:CDS | 10.0% |
| !! | AAATTATTAGCAAATTATTT+GGG | + | chr3_1:23848692-23848711 | Msa0353630:CDS | 10.0% |
| !! | AAAAAAAATAAATACGATTG+AGG | - | chr3_1:23845719-23845738 | None:intergenic | 15.0% |
| !!! | TATTTTGATTTTATGGTATA+AGG | - | chr3_1:23845872-23845891 | None:intergenic | 15.0% |
| !! | GAATATAAAAATAAAAATGG+AGG | - | chr3_1:23845921-23845940 | None:intergenic | 15.0% |
| !!! | CTGGTTTTTTTAATTAAAAT+TGG | + | chr3_1:23846072-23846091 | Msa0353630:intron | 15.0% |
| !! | TTTAATTAAAACCATTTAAG+TGG | + | chr3_1:23846148-23846167 | Msa0353630:intron | 15.0% |
| !!! | AATAGACTTCAAAAATTTTA+TGG | + | chr3_1:23846315-23846334 | Msa0353630:intron | 15.0% |
| !! | TAGATATTTCTTTCTTATAT+TGG | + | chr3_1:23846634-23846653 | Msa0353630:intron | 15.0% |
| !! | TTAAATTTCGTATTTATTTC+TGG | + | chr3_1:23847068-23847087 | Msa0353630:intron | 15.0% |
| !!! | TTTTTACAATAAATGAAACA+CGG | - | chr3_1:23847358-23847377 | None:intergenic | 15.0% |
| !! | ATATACATCATACATAAAAA+TGG | - | chr3_1:23847587-23847606 | None:intergenic | 15.0% |
| !! | AGTAAAAACAAAAAAAAAGT+TGG | - | chr3_1:23848034-23848053 | None:intergenic | 15.0% |
| !!! | TAGAGATAACATAATTTTTA+TGG | - | chr3_1:23848943-23848962 | None:intergenic | 15.0% |
| !!! | ATTCTTCATTTTTTTAGTGA+AGG | + | chr3_1:23845976-23845995 | Msa0353630:intron | 20.0% |
| !!! | ATGGTTTTAATTAAAAAGAC+TGG | - | chr3_1:23846143-23846162 | None:intergenic | 20.0% |
| !!! | ATAGTTTTAGTATCCTTATA+TGG | + | chr3_1:23846906-23846925 | Msa0353630:intron | 20.0% |
| !! | AACATACATATATCCATATA+AGG | - | chr3_1:23846922-23846941 | None:intergenic | 20.0% |
| !! | TTATATGGATATATGTATGT+TGG | + | chr3_1:23846921-23846940 | Msa0353630:intron | 20.0% |
| !! | AGTATTAGTAAACGTTTAAA+GGG | - | chr3_1:23847428-23847447 | None:intergenic | 20.0% |
| !! | TAGTATTAGTAAACGTTTAA+AGG | - | chr3_1:23847429-23847448 | None:intergenic | 20.0% |
| !! | AACGTTTACTAATACTAATA+TGG | + | chr3_1:23847432-23847451 | Msa0353630:intron | 20.0% |
| !!! | CTGTTATTGATTGTTTTAAA+TGG | + | chr3_1:23848523-23848542 | Msa0353630:intron | 20.0% |
| !! | TGTTTAAGAAACATTACAAA+TGG | + | chr3_1:23848999-23849018 | Msa0353630:CDS | 20.0% |
| !! | GTTTAAGAAACATTACAAAT+GGG | + | chr3_1:23849000-23849019 | Msa0353630:CDS | 20.0% |
| !! | ATTTATCAATGAATATGCAA+GGG | + | chr3_1:23849494-23849513 | Msa0353630:CDS | 20.0% |
| !!! | AATTTCAAACATTTCGTTTT+AGG | - | chr3_1:23849587-23849606 | None:intergenic | 20.0% |
| !!! | GTTTTGTATATGTTTTGGTT+TGG | + | chr3_1:23845814-23845833 | Msa0353630:intron | 25.0% |
| ! | GGTATAAGGATTAAACAAAT+CGG | - | chr3_1:23845858-23845877 | None:intergenic | 25.0% |
| ! | TTAAAACCATTTAAGTGGAT+TGG | + | chr3_1:23846153-23846172 | Msa0353630:intron | 25.0% |
| ! | GAAGAAAAACAAAATGGAAT+GGG | - | chr3_1:23846247-23846266 | None:intergenic | 25.0% |
| ! | TGAAGAAAAACAAAATGGAA+TGG | - | chr3_1:23846248-23846267 | None:intergenic | 25.0% |
| ! | CTATCTGAAGAAAAACAAAA+TGG | - | chr3_1:23846253-23846272 | None:intergenic | 25.0% |
| !! | ATGACAATTGTATGTTGATT+GGG | + | chr3_1:23846382-23846401 | Msa0353630:intron | 25.0% |
| !!! | TTGTTCGTTTGTTTAAGTTT+TGG | + | chr3_1:23846808-23846827 | Msa0353630:intron | 25.0% |
| ! | AATTGAAAAGAGAACCTAAT+GGG | - | chr3_1:23846949-23846968 | None:intergenic | 25.0% |
| ! | AAATTGAAAAGAGAACCTAA+TGG | - | chr3_1:23846950-23846969 | None:intergenic | 25.0% |
| ! | TCTACAAATAGCAAAGTAAA+AGG | + | chr3_1:23847028-23847047 | Msa0353630:intron | 25.0% |
| ! | AAATACTAAGCATAGTTTAG+GGG | - | chr3_1:23847123-23847142 | None:intergenic | 25.0% |
| ! | GAAATACTAAGCATAGTTTA+GGG | - | chr3_1:23847124-23847143 | None:intergenic | 25.0% |
| ! | AGAAATACTAAGCATAGTTT+AGG | - | chr3_1:23847125-23847144 | None:intergenic | 25.0% |
| ! | ATAAATGAAACACGGATATA+CGG | - | chr3_1:23847350-23847369 | None:intergenic | 25.0% |
| !!! | AAACGTTTAAAGGGTATTAT+GGG | - | chr3_1:23847419-23847438 | None:intergenic | 25.0% |
| !!! | TAAACGTTTAAAGGGTATTA+TGG | - | chr3_1:23847420-23847439 | None:intergenic | 25.0% |
| ! | CTTGTAATTGTAAACAAACA+AGG | + | chr3_1:23847455-23847474 | Msa0353630:intron | 25.0% |
| ! | AGTAAATAATAACATGTGAG+TGG | - | chr3_1:23847619-23847638 | None:intergenic | 25.0% |
| !! | AAACTTGCTTCTCTTTATAA+AGG | + | chr3_1:23847701-23847720 | Msa0353630:intron | 25.0% |
| ! | ATAAAAAGAAACCAAGATAC+TGG | + | chr3_1:23848431-23848450 | Msa0353630:CDS | 25.0% |
| ! | TAAAAAGAAACCAAGATACT+GGG | + | chr3_1:23848432-23848451 | Msa0353630:CDS | 25.0% |
| !!! | ATGTTGTTATTTGTTAGATG+TGG | + | chr3_1:23848553-23848572 | Msa0353630:intron | 25.0% |
| ! | ATTTAAAGATTTCCCGATAA+TGG | + | chr3_1:23848730-23848749 | Msa0353630:CDS | 25.0% |
| !! | GTTTTATGATAGCAAAGTAA+AGG | + | chr3_1:23848796-23848815 | Msa0353630:intron | 25.0% |
| ! | ATTATTGTCTCAATTAATGC+AGG | + | chr3_1:23849181-23849200 | Msa0353630:intron | 25.0% |
| ! | GATTTATCAATGAATATGCA+AGG | + | chr3_1:23849493-23849512 | Msa0353630:CDS | 25.0% |
| !!! | AAGATGTTTTTGCAATAGTT+TGG | - | chr3_1:23850055-23850074 | None:intergenic | 25.0% |
| ! | TGAATCTCATGTTAGGTTTT+GGG | - | chr3_1:23845527-23845546 | None:intergenic | 30.0% |
| !! | GTGCAGTTTTGTATATGTTT+TGG | + | chr3_1:23845809-23845828 | Msa0353630:intron | 30.0% |
| ATAAGGATTAAACAAATCGG+TGG | - | chr3_1:23845855-23845874 | None:intergenic | 30.0% | |
| ! | ATTAAAAAGACTGGTTCAAG+AGG | - | chr3_1:23846134-23846153 | None:intergenic | 30.0% |
| TTAGTACCAATCCACTTAAA+TGG | - | chr3_1:23846162-23846181 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCAGATAGACAGT+TGG | + | chr3_1:23846258-23846277 | Msa0353630:intron | 30.0% |
| CAATCAACATACAATTGTCA+TGG | - | chr3_1:23846383-23846402 | None:intergenic | 30.0% | |
| CATGACAATTGTATGTTGAT+TGG | + | chr3_1:23846381-23846400 | Msa0353630:intron | 30.0% | |
| ! | TGACAATTGTATGTTGATTG+GGG | + | chr3_1:23846383-23846402 | Msa0353630:intron | 30.0% |
| TATCAAAAACTCCTGCAAAT+TGG | + | chr3_1:23846609-23846628 | Msa0353630:intron | 30.0% | |
| AAATATCTACACCAATTTGC+AGG | - | chr3_1:23846623-23846642 | None:intergenic | 30.0% | |
| ATTGAAAAGAGAACCTAATG+GGG | - | chr3_1:23846948-23846967 | None:intergenic | 30.0% | |
| ! | CTTTATTCCTTTTTGCCTAA+GGG | - | chr3_1:23846998-23847017 | None:intergenic | 30.0% |
| !! | ACTTTGCTATTTGTAGAAAC+AGG | - | chr3_1:23847025-23847044 | None:intergenic | 30.0% |
| ATGTATGAAACACAGTATGT+TGG | + | chr3_1:23847377-23847396 | Msa0353630:intron | 30.0% | |
| !! | AACGTTTAAAGGGTATTATG+GGG | - | chr3_1:23847418-23847437 | None:intergenic | 30.0% |
| TGTGTATGAGTTAATTGTTG+TGG | - | chr3_1:23847681-23847700 | None:intergenic | 30.0% | |
| ! | TCTCTTTATAAAGGCATACT+AGG | + | chr3_1:23847710-23847729 | Msa0353630:intron | 30.0% |
| ! | CTCTTTATAAAGGCATACTA+GGG | + | chr3_1:23847711-23847730 | Msa0353630:intron | 30.0% |
| !!! | GCAAGTTTTAAGAAAGATAG+AGG | - | chr3_1:23847759-23847778 | None:intergenic | 30.0% |
| ATTCTTCTAACTTCTAACGA+GGG | - | chr3_1:23847807-23847826 | None:intergenic | 30.0% | |
| AATTCTTCTAACTTCTAACG+AGG | - | chr3_1:23847808-23847827 | None:intergenic | 30.0% | |
| TGCTGCACATATTATAAGAA+GGG | - | chr3_1:23847852-23847871 | None:intergenic | 30.0% | |
| TTGCTGCACATATTATAAGA+AGG | - | chr3_1:23847853-23847872 | None:intergenic | 30.0% | |
| AAAAACATAAGATGAGTGAG+GGG | - | chr3_1:23847949-23847968 | None:intergenic | 30.0% | |
| CAAAAACATAAGATGAGTGA+GGG | - | chr3_1:23847950-23847969 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTCACAACCTAA+CGG | - | chr3_1:23848102-23848121 | None:intergenic | 30.0% |
| AAATCAAAGTTTGTACAACC+CGG | + | chr3_1:23848118-23848137 | Msa0353630:intron | 30.0% | |
| TAATCTAGTGTTCCTATTTG+TGG | + | chr3_1:23848475-23848494 | Msa0353630:intron | 30.0% | |
| AATCTAGTGTTCCTATTTGT+GGG | + | chr3_1:23848476-23848495 | Msa0353630:intron | 30.0% | |
| !! | TTGTTATTTGTTAGATGTGG+CGG | + | chr3_1:23848556-23848575 | Msa0353630:intron | 30.0% |
| TCTCATCTTTCAACCATTAT+CGG | - | chr3_1:23848746-23848765 | None:intergenic | 30.0% | |
| ! | ATGAGATGCTGCAATTTTAA+AGG | + | chr3_1:23848760-23848779 | Msa0353630:intron | 30.0% |
| !! | AAGTTTGTTGTTGATGATGA+TGG | + | chr3_1:23848914-23848933 | Msa0353630:CDS | 30.0% |
| AATTATGTTATCTCTAGCCT+TGG | + | chr3_1:23848947-23848966 | Msa0353630:CDS | 30.0% | |
| ! | TTTTATTCACCCAGATCATT+GGG | + | chr3_1:23849063-23849082 | Msa0353630:CDS | 30.0% |
| !!! | CTGTTTTTGTCAATTTTAGG+AGG | + | chr3_1:23849086-23849105 | Msa0353630:CDS | 30.0% |
| !! | TTTTGTCAATTTTAGGAGGA+AGG | + | chr3_1:23849090-23849109 | Msa0353630:CDS | 30.0% |
| ACGCACATTATAAGATTGTT+TGG | + | chr3_1:23849363-23849382 | Msa0353630:intron | 30.0% | |
| TATCATATGTGCTTACTTGT+AGG | + | chr3_1:23849401-23849420 | Msa0353630:intron | 30.0% | |
| TACTTGTAGGAATTGAGATA+TGG | + | chr3_1:23849414-23849433 | Msa0353630:intron | 30.0% | |
| TTCATTGATAAATCTTCCCT+TGG | - | chr3_1:23849487-23849506 | None:intergenic | 30.0% | |
| ! | TTTTTGCACAATTGAAAACG+AGG | + | chr3_1:23849541-23849560 | Msa0353630:intron | 30.0% |
| TGCTTGCATTTGCATTAATA+AGG | - | chr3_1:23850001-23850020 | None:intergenic | 30.0% | |
| ! | ACAAAATTCTAGAGACAAAG+AGG | + | chr3_1:23850020-23850039 | Msa0353630:CDS | 30.0% |
| GTTATACAAAGACAAGTGTA+AGG | - | chr3_1:23850116-23850135 | None:intergenic | 30.0% | |
| ! | GTTTGTCTGAGATGAAGATT+TGG | - | chr3_1:23845484-23845503 | None:intergenic | 35.0% |
| !! | AATCTCATGTTAGGTTTTGG+GGG | - | chr3_1:23845525-23845544 | None:intergenic | 35.0% |
| ! | GAATCTCATGTTAGGTTTTG+GGG | - | chr3_1:23845526-23845545 | None:intergenic | 35.0% |
| ! | GTGAATCTCATGTTAGGTTT+TGG | - | chr3_1:23845528-23845547 | None:intergenic | 35.0% |
| !! | GGTTTTGTGAATCTCATGTT+AGG | - | chr3_1:23845534-23845553 | None:intergenic | 35.0% |
| !!! | TTTTGTGAGCATCGATTGTT+GGG | - | chr3_1:23845571-23845590 | None:intergenic | 35.0% |
| AAAAATGGAGGAACCACAAA+TGG | - | chr3_1:23845909-23845928 | None:intergenic | 35.0% | |
| GCTGATTGCATTTCATAAAC+TGG | + | chr3_1:23846053-23846072 | Msa0353630:intron | 35.0% | |
| !! | GTGGATTGGTACTAATGATT+TGG | + | chr3_1:23846167-23846186 | Msa0353630:intron | 35.0% |
| CAAAAAACGAATTCAGCCAT+TGG | + | chr3_1:23846445-23846464 | Msa0353630:five_prime_UTR | 35.0% | |
| !! | AAGCATTCACGTTGATGATA+AGG | + | chr3_1:23846486-23846505 | Msa0353630:five_prime_UTR | 35.0% |
| AGGTTGTTAAAGCTCAGATT+TGG | + | chr3_1:23846506-23846525 | Msa0353630:five_prime_UTR | 35.0% | |
| GGTTGTTAAAGCTCAGATTT+GGG | + | chr3_1:23846507-23846526 | Msa0353630:five_prime_UTR | 35.0% | |
| AGTGTGATCATAACTTTGAG+TGG | - | chr3_1:23846772-23846791 | None:intergenic | 35.0% | |
| ! | TCTCTGTCTTCTTCTTCTTT+TGG | + | chr3_1:23846859-23846878 | Msa0353630:intron | 35.0% |
| ! | CTCTGTCTTCTTCTTCTTTT+GGG | + | chr3_1:23846860-23846879 | Msa0353630:intron | 35.0% |
| !! | GCTTTATTCCTTTTTGCCTA+AGG | - | chr3_1:23846999-23847018 | None:intergenic | 35.0% |
| TGGATTGTTCAATAGAACCA+GGG | - | chr3_1:23847097-23847116 | None:intergenic | 35.0% | |
| TTGGATTGTTCAATAGAACC+AGG | - | chr3_1:23847098-23847117 | None:intergenic | 35.0% | |
| ! | GTGAAAATGATGGTGAGTTA+TGG | - | chr3_1:23847886-23847905 | None:intergenic | 35.0% |
| CCAAAAACATAAGATGAGTG+AGG | - | chr3_1:23847951-23847970 | None:intergenic | 35.0% | |
| ! | CCTCACTCATCTTATGTTTT+TGG | + | chr3_1:23847948-23847967 | Msa0353630:five_prime_UTR | 35.0% |
| !!! | ACTCATCTTATGTTTTTGGC+TGG | + | chr3_1:23847952-23847971 | Msa0353630:five_prime_UTR | 35.0% |
| !!! | GTGTGATTTTGATTCAAGTG+AGG | + | chr3_1:23847983-23848002 | Msa0353630:CDS | 35.0% |
| TAGTCTAATGTTTGAGGAGT+AGG | + | chr3_1:23848006-23848025 | Msa0353630:intron | 35.0% | |
| ATCTAGTGTTCCTATTTGTG+GGG | + | chr3_1:23848477-23848496 | Msa0353630:intron | 35.0% | |
| ! | TGTTATTTGTTAGATGTGGC+GGG | + | chr3_1:23848557-23848576 | Msa0353630:intron | 35.0% |
| TTCAAGGAGACATTTAACAG+TGG | + | chr3_1:23848586-23848605 | Msa0353630:CDS | 35.0% | |
| AGCAAATTATTTGGGCCAAT+TGG | + | chr3_1:23848700-23848719 | Msa0353630:CDS | 35.0% | |
| CTTTAAATTGCCTTGCCAAT+TGG | - | chr3_1:23848718-23848737 | None:intergenic | 35.0% | |
| CTCATCTTTCAACCATTATC+GGG | - | chr3_1:23848745-23848764 | None:intergenic | 35.0% | |
| TGATCTGGGTGAATAAAAGT+TGG | - | chr3_1:23849061-23849080 | None:intergenic | 35.0% | |
| ! | CTTTTATTCACCCAGATCAT+TGG | + | chr3_1:23849062-23849081 | Msa0353630:CDS | 35.0% |
| !!! | GGGCTGTTTTTGTCAATTTT+AGG | + | chr3_1:23849083-23849102 | Msa0353630:CDS | 35.0% |
| CACAAAAAAATGCAAGAAGC+CGG | + | chr3_1:23849210-23849229 | Msa0353630:CDS | 35.0% | |
| !!! | GAGGAGTTTTTTGCATTTTC+CGG | - | chr3_1:23849232-23849251 | None:intergenic | 35.0% |
| CAAAAAACTCCTCATACACT+AGG | + | chr3_1:23849239-23849258 | Msa0353630:CDS | 35.0% | |
| !! | TCAGAAAAGATGAGTTGGTA+TGG | + | chr3_1:23849279-23849298 | Msa0353630:intron | 35.0% |
| ATATGGTCGAGAATATAGCA+GGG | + | chr3_1:23849431-23849450 | Msa0353630:CDS | 35.0% | |
| CACTGTATTATTGCCTAAAG+AGG | + | chr3_1:23849609-23849628 | Msa0353630:intron | 35.0% | |
| TTCAATGTGATGACCTCTTT+AGG | - | chr3_1:23849625-23849644 | None:intergenic | 35.0% | |
| TCATGAACTGTTGTATATGC+AGG | + | chr3_1:23849726-23849745 | Msa0353630:intron | 35.0% | |
| ATTTGCCAATGTGTTTGGAA+AGG | + | chr3_1:23849795-23849814 | Msa0353630:CDS | 35.0% | |
| ATGTTCCTTTCCAAACACAT+TGG | - | chr3_1:23849803-23849822 | None:intergenic | 35.0% | |
| CTCCTTAAGAGAATCAATCT+CGG | - | chr3_1:23849941-23849960 | None:intergenic | 35.0% | |
| ! | GATTGATTCTCTTAAGGAGA+AGG | + | chr3_1:23849942-23849961 | Msa0353630:CDS | 35.0% |
| !! | TTCAGAAGTTGATGTCTTGA+AGG | + | chr3_1:23849966-23849985 | Msa0353630:CDS | 35.0% |
| ! | GAGATGAAGATTTGGTCAGT+GGG | - | chr3_1:23845476-23845495 | None:intergenic | 40.0% |
| ! | TGAGATGAAGATTTGGTCAG+TGG | - | chr3_1:23845477-23845496 | None:intergenic | 40.0% |
| !! | TTTGTGAGCATCGATTGTTG+GGG | - | chr3_1:23845570-23845589 | None:intergenic | 40.0% |
| !!! | GTTTTGTGAGCATCGATTGT+TGG | - | chr3_1:23845572-23845591 | None:intergenic | 40.0% |
| !! | TGTTCAGAGCACTGATTGTT+GGG | - | chr3_1:23845601-23845620 | None:intergenic | 40.0% |
| !! | TTGTTCAGAGCACTGATTGT+TGG | - | chr3_1:23845602-23845621 | None:intergenic | 40.0% |
| ! | CAATCAGTGCTCTGAACAAT+CGG | + | chr3_1:23845603-23845622 | Msa0353630:five_prime_UTR | 40.0% |
| ACTCTGTTCTTCTCCTCAAT+CGG | + | chr3_1:23845787-23845806 | Msa0353630:intron | 40.0% | |
| !! | ATACAAAACTGCACCGATTG+AGG | - | chr3_1:23845803-23845822 | None:intergenic | 40.0% |
| AGGATTAAACAAATCGGTGG+TGG | - | chr3_1:23845852-23845871 | None:intergenic | 40.0% | |
| ! | TTTTCTCTCTCCTCCATTTG+TGG | + | chr3_1:23845893-23845912 | Msa0353630:intron | 40.0% |
| !!! | GGTTTGAACCAGTTTTGAAC+TGG | + | chr3_1:23846093-23846112 | Msa0353630:intron | 40.0% |
| !!! | AACCAGTTTTGAACTGGACT+GGG | + | chr3_1:23846099-23846118 | Msa0353630:intron | 40.0% |
| TGGATTCCCTACTACAACTA+GGG | - | chr3_1:23846207-23846226 | None:intergenic | 40.0% | |
| ! | TGTATGTTGATTGGGGATTC+AGG | + | chr3_1:23846390-23846409 | Msa0353630:intron | 40.0% |
| AGTAGCGAATTCAACACCAA+TGG | - | chr3_1:23846464-23846483 | None:intergenic | 40.0% | |
| TATGTATGTTGGTCCCCATT+AGG | + | chr3_1:23846932-23846951 | Msa0353630:intron | 40.0% | |
| AAGTGTGAGTTAGTTCCCTT+AGG | + | chr3_1:23846980-23846999 | Msa0353630:intron | 40.0% | |
| GTTAGTTCCCTTAGGCAAAA+AGG | + | chr3_1:23846988-23847007 | Msa0353630:intron | 40.0% | |
| ! | TGCTATTTGTAGAAACAGGC+AGG | - | chr3_1:23847021-23847040 | None:intergenic | 40.0% |
| !! | GTATTTATTTCTGGTACCCC+TGG | + | chr3_1:23847077-23847096 | Msa0353630:intron | 40.0% |
| GGATTGTTCAATAGAACCAG+GGG | - | chr3_1:23847096-23847115 | None:intergenic | 40.0% | |
| TAAGCATAGTTTAGGGGACT+TGG | - | chr3_1:23847117-23847136 | None:intergenic | 40.0% | |
| ATTATGTGTCAGTGTCGTGT+CGG | - | chr3_1:23847245-23847264 | None:intergenic | 40.0% | |
| !!! | AAGAAGGGTGCTTCTTTTTG+TGG | - | chr3_1:23847837-23847856 | None:intergenic | 40.0% |
| TAAGATGAGTGAGGGGAAAA+GGG | - | chr3_1:23847942-23847961 | None:intergenic | 40.0% | |
| ATAAGATGAGTGAGGGGAAA+AGG | - | chr3_1:23847943-23847962 | None:intergenic | 40.0% | |
| GTGAGGTAGTCTAATGTTTG+AGG | + | chr3_1:23848000-23848019 | Msa0353630:intron | 40.0% | |
| GTAACATGATCATGCAGTGA+AGG | - | chr3_1:23848228-23848247 | None:intergenic | 40.0% | |
| GTTGTCACATGTGTATGTGA+AGG | - | chr3_1:23848298-23848317 | None:intergenic | 40.0% | |
| AAAGAAACCAAGATACTGGG+AGG | + | chr3_1:23848435-23848454 | Msa0353630:CDS | 40.0% | |
| AAAAACACAGCCCCACAAAT+AGG | - | chr3_1:23848490-23848509 | None:intergenic | 40.0% | |
| !!! | GGCTGTGTTTTTTCTCTTGT+TGG | + | chr3_1:23848498-23848517 | Msa0353630:intron | 40.0% |
| GTGCTTGAAGAATCTCCAAA+TGG | + | chr3_1:23848614-23848633 | Msa0353630:CDS | 40.0% | |
| AAGAATCTCCAAATGGAACC+AGG | + | chr3_1:23848621-23848640 | Msa0353630:CDS | 40.0% | |
| GTCATTATCCTGGTTCCATT+TGG | - | chr3_1:23848632-23848651 | None:intergenic | 40.0% | |
| ATTCCATCGAGTCATTATCC+TGG | - | chr3_1:23848642-23848661 | None:intergenic | 40.0% | |
| ATGGAATGATGTTCCTCAAC+CGG | + | chr3_1:23848655-23848674 | Msa0353630:CDS | 40.0% | |
| ATTATTTGGGCCAATTGGCA+AGG | + | chr3_1:23848705-23848724 | Msa0353630:CDS | 40.0% | |
| !! | TCTCTAGCCTTGGAAAGAAA+TGG | + | chr3_1:23848957-23848976 | Msa0353630:CDS | 40.0% |
| ! | TAGCCTTGGAAAGAAATGGA+AGG | + | chr3_1:23848961-23848980 | Msa0353630:CDS | 40.0% |
| CATCCTTCCATTTCTTTCCA+AGG | - | chr3_1:23848967-23848986 | None:intergenic | 40.0% | |
| CTTGGAAAGAAATGGAAGGA+TGG | + | chr3_1:23848965-23848984 | Msa0353630:CDS | 40.0% | |
| CAAATGGGAACTCACATTAG+AGG | + | chr3_1:23849015-23849034 | Msa0353630:CDS | 40.0% | |
| CAAAAACAGCCCAATGATCT+GGG | - | chr3_1:23849075-23849094 | None:intergenic | 40.0% | |
| ACAAAAACAGCCCAATGATC+TGG | - | chr3_1:23849076-23849095 | None:intergenic | 40.0% | |
| TGCGATCAGAAAAGATGAGT+TGG | + | chr3_1:23849274-23849293 | Msa0353630:CDS | 40.0% | |
| TCTGTGTATGCAATCTCATC+TGG | + | chr3_1:23849340-23849359 | Msa0353630:intron | 40.0% | |
| GATATGGTCGAGAATATAGC+AGG | + | chr3_1:23849430-23849449 | Msa0353630:CDS | 40.0% | |
| TATGGTCGAGAATATAGCAG+GGG | + | chr3_1:23849432-23849451 | Msa0353630:CDS | 40.0% | |
| TGTTTCGCATAAAGATGCCA+AGG | + | chr3_1:23849467-23849486 | Msa0353630:CDS | 40.0% | |
| GTTTCGCATAAAGATGCCAA+GGG | + | chr3_1:23849468-23849487 | Msa0353630:CDS | 40.0% | |
| !! | TTCGTTTTAGGTGAGCTATG+AGG | - | chr3_1:23849575-23849594 | None:intergenic | 40.0% |
| ! | GAAGCATTTGCCAATGTGTT+TGG | + | chr3_1:23849790-23849809 | Msa0353630:CDS | 40.0% |
| !! | CATTTTCTCATTAGCCTCGA+TGG | - | chr3_1:23849905-23849924 | None:intergenic | 40.0% |
| ! | AGCCGAGATTGATTCTCTTA+AGG | + | chr3_1:23849936-23849955 | Msa0353630:CDS | 40.0% |
| !!! | CATGTTAGGTTTTGGGGGTT+TGG | - | chr3_1:23845520-23845539 | None:intergenic | 45.0% |
| ! | ATCGATTGTTGGGGGTTTTG+GGG | - | chr3_1:23845561-23845580 | None:intergenic | 45.0% |
| !! | CATCGATTGTTGGGGGTTTT+GGG | - | chr3_1:23845562-23845581 | None:intergenic | 45.0% |
| !! | TTGTGAGCATCGATTGTTGG+GGG | - | chr3_1:23845569-23845588 | None:intergenic | 45.0% |
| !! | TTCAGAGCACTGATTGTTGG+GGG | - | chr3_1:23845599-23845618 | None:intergenic | 45.0% |
| !! | GTTCAGAGCACTGATTGTTG+GGG | - | chr3_1:23845600-23845619 | None:intergenic | 45.0% |
| TGCTCACTCACTCTCTCAAT+CGG | + | chr3_1:23845626-23845645 | Msa0353630:five_prime_UTR | 45.0% | |
| TCTCTCAATCGGTGGTCAAA+AGG | + | chr3_1:23845637-23845656 | Msa0353630:five_prime_UTR | 45.0% | |
| TGCTCACTCACTCTCTCAAT+CGG | + | chr3_1:23845626-23845645 | Msa0353630:five_prime_UTR | 45.0% | |
| TCTCTCAATCGGTGGTCAAA+AGG | + | chr3_1:23845637-23845656 | Msa0353630:five_prime_UTR | 45.0% | |
| AATGGAGGAACCACAAATGG+AGG | - | chr3_1:23845906-23845925 | None:intergenic | 45.0% | |
| !!! | GAACCAGTTTTGAACTGGAC+TGG | + | chr3_1:23846098-23846117 | Msa0353630:intron | 45.0% |
| GGATTCCCTACTACAACTAG+GGG | - | chr3_1:23846206-23846225 | None:intergenic | 45.0% | |
| GTGGATTCCCTACTACAACT+AGG | - | chr3_1:23846208-23846227 | None:intergenic | 45.0% | |
| TTGATTGGGGATTCAGGTGT+TGG | + | chr3_1:23846396-23846415 | Msa0353630:intron | 45.0% | |
| GGATATACGGATACAGACAC+TGG | - | chr3_1:23847337-23847356 | None:intergenic | 45.0% | |
| GCAGAGTGGTGTGAAAATGA+TGG | - | chr3_1:23847896-23847915 | None:intergenic | 45.0% | |
| TTCCATTCACAACCTAACGG+AGG | - | chr3_1:23848099-23848118 | None:intergenic | 45.0% | |
| ATTGGCTGTCTCAAGAGTTC+CGG | - | chr3_1:23848140-23848159 | None:intergenic | 45.0% | |
| !! | TGAGCTGAGGCGCTTTTTAT+TGG | - | chr3_1:23848158-23848177 | None:intergenic | 45.0% |
| AAACCTTGTGAACTGAGCTG+AGG | - | chr3_1:23848171-23848190 | None:intergenic | 45.0% | |
| !! | AGTGAAGGTGTCACATGTGT+AGG | - | chr3_1:23848213-23848232 | None:intergenic | 45.0% |
| !! | TGTGAAGGTGTCACATGTGT+AGG | - | chr3_1:23848283-23848302 | None:intergenic | 45.0% |
| ACACATGATAGTCCGTACCT+TGG | + | chr3_1:23848319-23848338 | Msa0353630:CDS | 45.0% | |
| ACATCAACCTCCCAGTATCT+TGG | - | chr3_1:23848445-23848464 | None:intergenic | 45.0% | |
| !! | ATGTGGCGGGTCATATTTCA+AGG | + | chr3_1:23848570-23848589 | Msa0353630:CDS | 45.0% |
| GAACCAGGATAATGACTCGA+TGG | + | chr3_1:23848636-23848655 | Msa0353630:CDS | 45.0% | |
| AATGATGTTCCTCAACCGGT+GGG | + | chr3_1:23848659-23848678 | Msa0353630:CDS | 45.0% | |
| AATTTAGCAGATTGCCCCAC+CGG | - | chr3_1:23848677-23848696 | None:intergenic | 45.0% | |
| GAGTCAGTTCCTAGTGTATG+AGG | - | chr3_1:23849251-23849270 | None:intergenic | 45.0% | |
| GTGTTTGGAAAGGAACATGC+TGG | + | chr3_1:23849805-23849824 | Msa0353630:CDS | 45.0% | |
| TGCTGGATATGTCCGTTCTA+TGG | + | chr3_1:23849822-23849841 | Msa0353630:CDS | 45.0% | |
| GCTGGATATGTCCGTTCTAT+GGG | + | chr3_1:23849823-23849842 | Msa0353630:CDS | 45.0% | |
| CTGGATATGTCCGTTCTATG+GGG | + | chr3_1:23849824-23849843 | Msa0353630:CDS | 45.0% | |
| TTATGCCAAGCCCCATAGAA+CGG | - | chr3_1:23849837-23849856 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTTTAAAGAATT+TGG | + | chr3_1:23845757-23845776 | Msa0353630:intron | 5.0% |
| !! | TCGATTGTTGGGGGTTTTGG+GGG | - | chr3_1:23845560-23845579 | None:intergenic | 50.0% |
| !!! | GCATCGATTGTTGGGGGTTT+TGG | - | chr3_1:23845563-23845582 | None:intergenic | 50.0% |
| !! | AGCACTGATTGTTGGGGGTT+AGG | - | chr3_1:23845594-23845613 | None:intergenic | 50.0% |
| TCACTCACTCTCTCAATCGG+TGG | + | chr3_1:23845629-23845648 | Msa0353630:five_prime_UTR | 50.0% | |
| TCACTCACTCTCTCAATCGG+TGG | + | chr3_1:23845629-23845648 | Msa0353630:five_prime_UTR | 50.0% | |
| GTCCCAGTCCAGTTCAAAAC+TGG | - | chr3_1:23846104-23846123 | None:intergenic | 50.0% | |
| ! | GACTGGTTCAAGAGGCAAAG+TGG | - | chr3_1:23846126-23846145 | None:intergenic | 50.0% |
| ! | ACTACAACTAGGGGTGTGCA+TGG | - | chr3_1:23846197-23846216 | None:intergenic | 50.0% |
| TGCACACCCCTAGTTGTAGT+AGG | + | chr3_1:23846197-23846216 | Msa0353630:intron | 50.0% | |
| GCACACCCCTAGTTGTAGTA+GGG | + | chr3_1:23846198-23846217 | Msa0353630:intron | 50.0% | |
| GGGATGAGACTATGTCTCAG+TGG | - | chr3_1:23846227-23846246 | None:intergenic | 50.0% | |
| ! | AGACAGTTGGTGTTTGCTGC+AGG | + | chr3_1:23846271-23846290 | Msa0353630:intron | 50.0% |
| ! | GCTCAGATTTGGGATACTGC+TGG | + | chr3_1:23846517-23846536 | Msa0353630:five_prime_UTR | 50.0% |
| GGGATACTGCTGGTCAAGAA+AGG | + | chr3_1:23846527-23846546 | Msa0353630:five_prime_UTR | 50.0% | |
| TTGGCTGTCTCAAGAGTTCC+GGG | - | chr3_1:23848139-23848158 | None:intergenic | 50.0% | |
| GTAGGCTATGAAGCTGCATG+TGG | - | chr3_1:23848195-23848214 | None:intergenic | 50.0% | |
| TCATCTCCAGAGCCAAGGTA+CGG | - | chr3_1:23848334-23848353 | None:intergenic | 50.0% | |
| CATCATCATCTCCAGAGCCA+AGG | - | chr3_1:23848339-23848358 | None:intergenic | 50.0% | |
| GAATGATGTTCCTCAACCGG+TGG | + | chr3_1:23848658-23848677 | Msa0353630:CDS | 50.0% | |
| ATGATGTTCCTCAACCGGTG+GGG | + | chr3_1:23848660-23848679 | Msa0353630:CDS | 50.0% | |
| TAGGAGGAAGGCTGAACAAG+TGG | + | chr3_1:23849102-23849121 | Msa0353630:CDS | 50.0% | |
| TATGTCCGTTCTATGGGGCT+TGG | + | chr3_1:23849829-23849848 | Msa0353630:CDS | 50.0% | |
| GAGCGACTAGAGATTCGAGA+TGG | - | chr3_1:23849862-23849881 | None:intergenic | 50.0% | |
| ! | ATTAGCCTCGTCTTCCATCG+AGG | + | chr3_1:23849888-23849907 | Msa0353630:CDS | 50.0% |
| ! | ATTAGCCTCGATGGAAGACG+AGG | - | chr3_1:23849896-23849915 | None:intergenic | 50.0% |
| !!! | TGTTGGGGGTTTTGGGGGTT+AGG | - | chr3_1:23845555-23845574 | None:intergenic | 55.0% |
| ! | TGTCAGTGTCGTGTCGGTGT+CGG | - | chr3_1:23847239-23847258 | None:intergenic | 55.0% |
| TGGTGATCTGGTTGGCAGAG+TGG | - | chr3_1:23847910-23847929 | None:intergenic | 55.0% | |
| ! | CCTACTGGTGGTGATCTGGT+TGG | - | chr3_1:23847918-23847937 | None:intergenic | 55.0% |
| CCAACCAGATCACCACCAGT+AGG | + | chr3_1:23847915-23847934 | Msa0353630:intron | 55.0% | |
| TGAGGGGAAAAGGGACCTAC+TGG | - | chr3_1:23847933-23847952 | None:intergenic | 55.0% | |
| ! | TAAACCGAAGCGCCTCCGTT+AGG | + | chr3_1:23848084-23848103 | Msa0353630:intron | 55.0% |
| !! | ACAACCTAACGGAGGCGCTT+CGG | - | chr3_1:23848091-23848110 | None:intergenic | 55.0% |
| ! | CGCCTCCGTTAGGTTGTGAA+TGG | + | chr3_1:23848094-23848113 | Msa0353630:intron | 55.0% |
| GTCACATGTGTAGGCGATGG+AGG | - | chr3_1:23848274-23848293 | None:intergenic | 55.0% | |
| ! | GGTGTCACATGTGTAGGCGA+TGG | - | chr3_1:23848277-23848296 | None:intergenic | 55.0% |
| GATAGTCCGTACCTTGGCTC+TGG | + | chr3_1:23848325-23848344 | Msa0353630:CDS | 55.0% | |
| ! | GGGACCTACTGGTGGTGATC+TGG | - | chr3_1:23847922-23847941 | None:intergenic | 60.0% |
| GGGGAAAAGGGACCTACTGG+TGG | - | chr3_1:23847930-23847949 | None:intergenic | 60.0% | |
| GCGCCTCAGCTCAGTTCACA+AGG | + | chr3_1:23848165-23848184 | Msa0353630:intron | 60.0% | |
| !! | ATGGAGGTGTCTCGTGTGGG+TGG | - | chr3_1:23848258-23848277 | None:intergenic | 60.0% |
| !! | GCGATGGAGGTGTCTCGTGT+GGG | - | chr3_1:23848261-23848280 | None:intergenic | 60.0% |
| ! | GAGGTGTCTCGTGTGGGTGG+TGG | - | chr3_1:23848255-23848274 | None:intergenic | 65.0% |
| !! | GGCGATGGAGGTGTCTCGTG+TGG | - | chr3_1:23848262-23848281 | None:intergenic | 65.0% |
| ! | GCAGATTGCCCCACCGGTTG+AGG | - | chr3_1:23848671-23848690 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 23845423 | 23850150 | 23845423 | ID=Msa0353630;Name=Msa0353630 |
| chr3_1 | mRNA | 23845423 | 23850150 | 23845423 | ID=Msa0353630-mRNA-1;Parent=Msa0353630;Name=Msa0353630-mRNA-1;_AED=0.16;_eAED=0.16;_QI=465|0.62|0.66|0.88|0.75|0.77|9|67|389 |
| chr3_1 | exon | 23845423 | 23845692 | 23845423 | ID=Msa0353630-mRNA-1:exon:5313;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23846412 | 23846548 | 23846412 | ID=Msa0353630-mRNA-1:exon:5314;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23847923 | 23848004 | 23847923 | ID=Msa0353630-mRNA-1:exon:5315;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23848250 | 23848469 | 23848250 | ID=Msa0353630-mRNA-1:exon:5316;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23848570 | 23848751 | 23848570 | ID=Msa0353630-mRNA-1:exon:5317;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23848911 | 23849123 | 23848911 | ID=Msa0353630-mRNA-1:exon:5318;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23849203 | 23849295 | 23849203 | ID=Msa0353630-mRNA-1:exon:5319;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23849423 | 23849524 | 23849423 | ID=Msa0353630-mRNA-1:exon:5320;Parent=Msa0353630-mRNA-1 |
| chr3_1 | exon | 23849748 | 23850150 | 23849748 | ID=Msa0353630-mRNA-1:exon:5321;Parent=Msa0353630-mRNA-1 |
| chr3_1 | five_prime_UTR | 23845423 | 23845692 | 23845423 | ID=Msa0353630-mRNA-1:five_prime_utr;Parent=Msa0353630-mRNA-1 |
| chr3_1 | five_prime_UTR | 23846412 | 23846548 | 23846412 | ID=Msa0353630-mRNA-1:five_prime_utr;Parent=Msa0353630-mRNA-1 |
| chr3_1 | five_prime_UTR | 23847923 | 23847980 | 23847923 | ID=Msa0353630-mRNA-1:five_prime_utr;Parent=Msa0353630-mRNA-1 |
| chr3_1 | CDS | 23847981 | 23848004 | 23847981 | ID=Msa0353630-mRNA-1:cds;Parent=Msa0353630-mRNA-1 |
| chr3_1 | CDS | 23848250 | 23848469 | 23848250 | ID=Msa0353630-mRNA-1:cds;Parent=Msa0353630-mRNA-1 |
| chr3_1 | CDS | 23848570 | 23848751 | 23848570 | ID=Msa0353630-mRNA-1:cds;Parent=Msa0353630-mRNA-1 |
| chr3_1 | CDS | 23848911 | 23849123 | 23848911 | ID=Msa0353630-mRNA-1:cds;Parent=Msa0353630-mRNA-1 |
| chr3_1 | CDS | 23849203 | 23849295 | 23849203 | ID=Msa0353630-mRNA-1:cds;Parent=Msa0353630-mRNA-1 |
| chr3_1 | CDS | 23849423 | 23849524 | 23849423 | ID=Msa0353630-mRNA-1:cds;Parent=Msa0353630-mRNA-1 |
| chr3_1 | CDS | 23849748 | 23850083 | 23849748 | ID=Msa0353630-mRNA-1:cds;Parent=Msa0353630-mRNA-1 |
| chr3_1 | three_prime_UTR | 23850084 | 23850150 | 23850084 | ID=Msa0353630-mRNA-1:three_prime_utr;Parent=Msa0353630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
