Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354620 | RHN66398.1 | 80.728 | 467 | 38 | 2 | 1 | 415 | 1 | 467 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354620 | sp|P17772|OSS2_PEA | 51.579 | 190 | 65 | 4 | 15 | 204 | 17 | 179 | 3.98e-53 | 178 |
| Msa0354620 | sp|P17772|OSS2_PEA | 56.000 | 125 | 51 | 1 | 210 | 334 | 59 | 179 | 6.16e-37 | 135 |
| Msa0354620 | sp|P17772|OSS2_PEA | 56.452 | 124 | 50 | 1 | 237 | 360 | 60 | 179 | 7.59e-37 | 135 |
| Msa0354620 | sp|P17772|OSS2_PEA | 43.195 | 169 | 89 | 2 | 114 | 282 | 18 | 179 | 2.70e-36 | 134 |
| Msa0354620 | sp|P17772|OSS2_PEA | 42.941 | 170 | 90 | 2 | 139 | 308 | 17 | 179 | 1.64e-34 | 129 |
| Msa0354620 | sp|P17772|OSS2_PEA | 53.226 | 124 | 54 | 1 | 263 | 386 | 60 | 179 | 2.36e-34 | 129 |
| Msa0354620 | sp|P17772|OSS2_PEA | 54.098 | 122 | 52 | 1 | 291 | 412 | 62 | 179 | 5.25e-33 | 125 |
| Msa0354620 | sp|P17772|OSS2_PEA | 55.000 | 100 | 45 | 0 | 315 | 414 | 60 | 159 | 1.46e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354620 | A0A396INT5 | 80.728 | 467 | 38 | 2 | 1 | 415 | 1 | 467 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0354620 | Msa0401520 | 0.868510 | 6.190378e-66 | -8.615850e-47 |
| Msa0354620 | Msa0448340 | 0.895908 | 6.124269e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354620 | MtrunA17_Chr3g0090471 | 80.728 | 467 | 38 | 2 | 1 | 415 | 1 | 467 | 0.0 | 628 |
| Msa0354620 | MtrunA17_Chr3g0090451 | 73.744 | 438 | 91 | 2 | 1 | 414 | 1 | 438 | 0.0 | 587 |
| Msa0354620 | MtrunA17_Chr3g0090451 | 75.419 | 358 | 87 | 1 | 57 | 413 | 210 | 567 | 6.88e-178 | 509 |
| Msa0354620 | MtrunA17_Chr3g0090451 | 71.831 | 355 | 99 | 1 | 57 | 410 | 236 | 590 | 8.67e-168 | 483 |
| Msa0354620 | MtrunA17_Chr3g0090451 | 71.475 | 305 | 87 | 0 | 54 | 358 | 286 | 590 | 2.16e-141 | 416 |
| Msa0354620 | MtrunA17_Chr3g0144461 | 69.021 | 439 | 99 | 5 | 1 | 411 | 1 | 430 | 0.0 | 535 |
| Msa0354620 | MtrunA17_Chr3g0144461 | 62.782 | 266 | 90 | 3 | 149 | 414 | 46 | 302 | 2.20e-97 | 298 |
| Msa0354620 | MtrunA17_Chr3g0144471 | 59.401 | 367 | 132 | 4 | 1 | 360 | 1 | 357 | 6.69e-124 | 363 |
| Msa0354620 | MtrunA17_Chr3g0144471 | 54.400 | 375 | 134 | 6 | 16 | 386 | 16 | 357 | 3.62e-117 | 345 |
| Msa0354620 | MtrunA17_Chr3g0144471 | 58.397 | 262 | 108 | 1 | 154 | 414 | 82 | 343 | 8.37e-96 | 291 |
| Msa0354620 | MtrunA17_Chr3g0138221 | 49.749 | 398 | 164 | 1 | 17 | 414 | 17 | 378 | 5.11e-123 | 365 |
| Msa0354620 | MtrunA17_Chr3g0138221 | 47.009 | 351 | 182 | 1 | 62 | 412 | 130 | 476 | 5.46e-102 | 311 |
| Msa0354620 | MtrunA17_Chr3g0138221 | 51.118 | 313 | 152 | 1 | 104 | 415 | 41 | 353 | 6.54e-101 | 308 |
| Msa0354620 | MtrunA17_Chr4g0034831 | 35.677 | 384 | 212 | 18 | 19 | 386 | 20 | 384 | 1.70e-52 | 180 |
| Msa0354620 | MtrunA17_Chr4g0034831 | 36.538 | 208 | 124 | 7 | 207 | 412 | 77 | 278 | 2.32e-29 | 117 |
| Msa0354620 | MtrunA17_Chr4g0034831 | 33.690 | 187 | 109 | 6 | 233 | 413 | 77 | 254 | 2.55e-21 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCCAACATTTCGGCTTA+TGG | 0.203861 | 3_1:+26546530 | Msa0354620:CDS |
| GAACCAAGACCTAATATTTC+AGG | 0.228183 | 3_1:+26546602 | Msa0354620:CDS |
| TCTCCATAACCTGAAATATT+AGG | 0.248735 | 3_1:-26546611 | None:intergenic |
| TTCTCCATAAGCTGAAATAT+TGG | 0.263465 | 3_1:-26546378 | None:intergenic |
| CGACCCAACATTTCAGCTTA+TGG | 0.265141 | 3_1:+26546218 | Msa0354620:CDS |
| AGACCCAATATTTCAGCTTA+TGG | 0.267378 | 3_1:+26546374 | Msa0354620:CDS |
| CGGCCCAACATTTCAGCTTA+TGG | 0.267437 | 3_1:+26546764 | Msa0354620:CDS |
| CGGCCTTGGTTCAAAATCTT+TGG | 0.278983 | 3_1:-26547059 | None:intergenic |
| AGACCCAACATTTCAGCTTA+TGG | 0.288132 | 3_1:+26546140 | Msa0354620:CDS |
| AGACCCAACATTTCAGCTTA+TGG | 0.288132 | 3_1:+26546452 | Msa0354620:CDS |
| AGACCCAACATTTCAGCTTA+TGG | 0.288132 | 3_1:+26546686 | Msa0354620:CDS |
| AGACCAAACATTTCAGCTTA+TGG | 0.288132 | 3_1:+26546842 | Msa0354620:CDS |
| TCTCCATATGCTGAAATATT+CGG | 0.293638 | 3_1:-26547079 | None:intergenic |
| AGACCTAATATTTCAGGTTA+TGG | 0.306217 | 3_1:+26546608 | Msa0354620:CDS |
| GCACTAACACCAAGGAAAAT+AGG | 0.310048 | 3_1:+26546093 | Msa0354620:CDS |
| ATAAGTGATGAACTAGTTAT+AGG | 0.313443 | 3_1:+26544157 | Msa0354620:five_prime_UTR |
| AGACCAAACATTTCAGCTTA+TGG | 0.326139 | 3_1:+26546998 | Msa0354620:CDS |
| TCTCCATAAGCTGAAATATT+GGG | 0.337654 | 3_1:-26546377 | None:intergenic |
| TCTCCGTAAGCTGAAATATT+AGG | 0.367030 | 3_1:-26546299 | None:intergenic |
| TGAACCACGACCCAACATTT+CGG | 0.373762 | 3_1:+26546523 | Msa0354620:CDS |
| TCTCCATAAGCTGAAATGTT+TGG | 0.381277 | 3_1:-26546845 | None:intergenic |
| GAAATGATCTGCGAGAATAT+TGG | 0.381517 | 3_1:+26545925 | Msa0354620:CDS |
| TATGCTGAAATATTGGATCT+TGG | 0.387955 | 3_1:-26546059 | None:intergenic |
| CTAAACTCATATAGACATTC+AGG | 0.389028 | 3_1:+26544195 | Msa0354620:five_prime_UTR |
| AGGAGTCCTTGAATTTCTTC+CGG | 0.392433 | 3_1:-26545975 | None:intergenic |
| TCTTGGTTCGAAATCTTTGA+TGG | 0.395429 | 3_1:-26546588 | None:intergenic |
| AGACAATGACATTGAAGTTA+AGG | 0.407426 | 3_1:+26546163 | Msa0354620:CDS |
| TCTTGGTTCAAAATCCTTAG+TGG | 0.409004 | 3_1:-26546822 | None:intergenic |
| AGGCCGAATATTTCAGCATA+TGG | 0.414557 | 3_1:+26547076 | Msa0354620:CDS |
| AGACAATGTCATAGATGTTA+AGG | 0.416032 | 3_1:+26546241 | Msa0354620:CDS |
| TAAGCTGAAATGTTTGGTCT+TGG | 0.428249 | 3_1:-26546839 | None:intergenic |
| TAAGCTGAAATGTTTGGTCT+TGG | 0.436584 | 3_1:-26546995 | None:intergenic |
| TAACCTGAAATATTAGGTCT+TGG | 0.437448 | 3_1:-26546605 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.440374 | 3_1:-26546455 | None:intergenic |
| CCTCACTAAACGCCTTCTCT+TGG | 0.445647 | 3_1:-26546028 | None:intergenic |
| TTGCCATAAGCTGAAATGTT+TGG | 0.452597 | 3_1:-26547001 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.452926 | 3_1:-26546917 | None:intergenic |
| AGACAACGCCATAGATGTTA+AGG | 0.454952 | 3_1:+26546553 | Msa0354620:CDS |
| TAAGCTGAAATATTGGGTCT+TGG | 0.456037 | 3_1:-26546371 | None:intergenic |
| TAAGCTGAAATATTAGGTCT+TGG | 0.457286 | 3_1:-26546293 | None:intergenic |
| TCTTGGTTCGAAGTCATTAG+TGG | 0.459059 | 3_1:-26546432 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.464437 | 3_1:-26546137 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.464437 | 3_1:-26546449 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.464437 | 3_1:-26546683 | None:intergenic |
| CTCACTAAACGCCTTCTCTT+GGG | 0.465546 | 3_1:-26546027 | None:intergenic |
| TCGTGGTTCAAAATCTTTAA+CGG | 0.469737 | 3_1:-26546198 | None:intergenic |
| CTTGGTTCAAAATCTTCGAC+TGG | 0.470140 | 3_1:-26546899 | None:intergenic |
| AGACCTAATATTTCAGCTTA+CGG | 0.471619 | 3_1:+26546296 | Msa0354620:CDS |
| TCTTGGTTCGAAATCATTAG+TGG | 0.478546 | 3_1:-26546666 | None:intergenic |
| TATGCTGAAATATTCGGCCT+TGG | 0.481023 | 3_1:-26547073 | None:intergenic |
| AGACCCAACATTTCAGCTTA+CGG | 0.484733 | 3_1:+26546920 | Msa0354620:CDS |
| CATCAATGTTGATGAAAAGA+AGG | 0.487177 | 3_1:+26546484 | Msa0354620:CDS |
| AATAAAGTTTGTAGCAATTG+TGG | 0.494400 | 3_1:+26545896 | Msa0354620:intron |
| TGGCATTGACACCAAGGAAA+AGG | 0.495726 | 3_1:+26547027 | Msa0354620:CDS |
| TCTCCATAAGCTGAAATGTT+GGG | 0.499953 | 3_1:-26546143 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.499953 | 3_1:-26546689 | None:intergenic |
| TTCTCCATAAGCTGAAATGT+TGG | 0.502734 | 3_1:-26546456 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.510874 | 3_1:-26546767 | None:intergenic |
| GTCTCCGTAAGCTGAAATGT+TGG | 0.512820 | 3_1:-26546924 | None:intergenic |
| GGAAAAGAACGGAGCCACTA+AGG | 0.513105 | 3_1:+26546808 | Msa0354620:CDS |
| CTCTCCATAAGCTGAAATGT+TGG | 0.517327 | 3_1:-26546690 | None:intergenic |
| TCTCCATAAGCCGAAATGTT+GGG | 0.518696 | 3_1:-26546533 | None:intergenic |
| TGTCTATATGAGTTTAGTGT+TGG | 0.522018 | 3_1:-26544189 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.525189 | 3_1:-26546221 | None:intergenic |
| ATCTCCATAAGCTGAAATGT+TGG | 0.531489 | 3_1:-26546768 | None:intergenic |
| CATGAAAGAGCAAGACATAC+CGG | 0.535405 | 3_1:+26545956 | Msa0354620:CDS |
| GTCTCCATAAGCTGAAATGT+TGG | 0.536347 | 3_1:-26546144 | None:intergenic |
| GTCTCCATAAGCTGAAATGT+TGG | 0.536347 | 3_1:-26546222 | None:intergenic |
| TCTCCGTAAGCTGAAATGTT+GGG | 0.536696 | 3_1:-26546923 | None:intergenic |
| ATTGAAGTTAAGGAAAAGAA+AGG | 0.540680 | 3_1:+26546173 | Msa0354620:CDS |
| TGAAAAGAAGGCAGCCGCTA+AGG | 0.542433 | 3_1:+26546496 | Msa0354620:CDS |
| ATTTCAGCATACGAAAATGA+TGG | 0.543256 | 3_1:+26546071 | Msa0354620:CDS |
| GTCTCCATAAGCCGAAATGT+TGG | 0.573599 | 3_1:-26546534 | None:intergenic |
| GACATACCGGAAGAAATTCA+AGG | 0.576602 | 3_1:+26545969 | Msa0354620:CDS |
| ATTTCAGCTTATGGCAACAA+TGG | 0.578529 | 3_1:+26547007 | Msa0354620:CDS |
| TAAGCTGAAATGTTGGGCCG+TGG | 0.583691 | 3_1:-26546761 | None:intergenic |
| TCGTGGTTCAAAATCCTTAG+CGG | 0.585471 | 3_1:-26546510 | None:intergenic |
| TAATCTCAATACCCAAGAGA+AGG | 0.591469 | 3_1:+26546016 | Msa0354620:CDS |
| TAAGCTGAAATGTTGGGTCG+TGG | 0.596199 | 3_1:-26546215 | None:intergenic |
| CTTACCAAGAAAAGCAAGAG+AGG | 0.596916 | 3_1:-26544261 | None:intergenic |
| TAAGCCGAAATGTTGGGTCG+TGG | 0.608895 | 3_1:-26546527 | None:intergenic |
| CAACAATGGCATTGACACCA+AGG | 0.613741 | 3_1:+26547021 | Msa0354620:CDS |
| GAAAATAGGAAAGATGTCAA+AGG | 0.620259 | 3_1:+26546107 | Msa0354620:CDS |
| ATTGATGCAAAGGAAAAGAA+CGG | 0.631469 | 3_1:+26546797 | Msa0354620:CDS |
| AGATGATGCCATTGATGCAA+AGG | 0.631796 | 3_1:+26546787 | Msa0354620:CDS |
| CCAAGAGAAGGCGTTTAGTG+AGG | 0.645806 | 3_1:+26546028 | Msa0354620:CDS |
| CCGTGGTTCAAAATCCTCAG+TGG | 0.686559 | 3_1:-26546744 | None:intergenic |
| TGAAAAGAAGACAGCCACTG+AGG | 0.687238 | 3_1:+26546730 | Msa0354620:CDS |
| AAATGATGGCACTAACACCA+AGG | 0.696723 | 3_1:+26546085 | Msa0354620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAGTAATATTTAAATCT+GGG | - | chr3_1:26545439-26545458 | None:intergenic | 10.0% |
| !! | ATTTAAGTAATATTTAAATC+TGG | - | chr3_1:26545440-26545459 | None:intergenic | 10.0% |
| !!! | TTTATATATTATAGAAGTAT+AGG | + | chr3_1:26545569-26545588 | Msa0354620:intron | 10.0% |
| !!! | TCTTAGTTTTTTTTTTTTAG+TGG | + | chr3_1:26544299-26544318 | Msa0354620:intron | 15.0% |
| !! | TTAAGTAATATTTAAATCTG+GGG | - | chr3_1:26545438-26545457 | None:intergenic | 15.0% |
| !! | ATAAATTCGAAAAATTAAAG+AGG | - | chr3_1:26545554-26545573 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAAACAGAACA+AGG | - | chr3_1:26545713-26545732 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAGTGGTTTCT+TGG | + | chr3_1:26544307-26544326 | Msa0354620:intron | 20.0% |
| !! | GACAATTAAAAAGTAACATA+TGG | - | chr3_1:26544412-26544431 | None:intergenic | 20.0% |
| !!! | TAGACATAGTATTGATTAAT+GGG | - | chr3_1:26544853-26544872 | None:intergenic | 20.0% |
| !!! | ATAGACATAGTATTGATTAA+TGG | - | chr3_1:26544854-26544873 | None:intergenic | 20.0% |
| !! | GAATTAATCAATGACTAATA+AGG | + | chr3_1:26544918-26544937 | Msa0354620:intron | 20.0% |
| !! | AATGACTAATAAGGTTAATT+TGG | + | chr3_1:26544927-26544946 | Msa0354620:intron | 20.0% |
| !! | AAATGAAAAGTAAAAACGAA+AGG | + | chr3_1:26545502-26545521 | Msa0354620:intron | 20.0% |
| !! | AATGAAAAGTAAAAACGAAA+GGG | + | chr3_1:26545503-26545522 | Msa0354620:intron | 20.0% |
| !! | TTAAAGAGGATTCATTAATT+TGG | - | chr3_1:26545540-26545559 | None:intergenic | 20.0% |
| !!! | AGAGATATCATAATCTTTTT+GGG | + | chr3_1:26545776-26545795 | Msa0354620:intron | 20.0% |
| ! | ATAAGTGATGAACTAGTTAT+AGG | + | chr3_1:26544157-26544176 | Msa0354620:five_prime_UTR | 25.0% |
| ! | AGTATATATTAGAGGTTAGA+GGG | - | chr3_1:26544389-26544408 | None:intergenic | 25.0% |
| ! | ACATATGGAGTATATATTAG+AGG | - | chr3_1:26544397-26544416 | None:intergenic | 25.0% |
| ! | GACAACTATAAAGTAACAAA+TGG | + | chr3_1:26544655-26544674 | Msa0354620:intron | 25.0% |
| ! | TACAAAGCTGACAATTATTA+CGG | - | chr3_1:26544715-26544734 | None:intergenic | 25.0% |
| !! | TTGAAAGTATGATTTAGTGA+AGG | - | chr3_1:26545404-26545423 | None:intergenic | 25.0% |
| ! | ACTAAATCATACTTTCAACT+TGG | + | chr3_1:26545406-26545425 | Msa0354620:intron | 25.0% |
| ! | ATGGAATATGATAAAGAGTT+GGG | - | chr3_1:26545683-26545702 | None:intergenic | 25.0% |
| ! | TATGGAATATGATAAAGAGT+TGG | - | chr3_1:26545684-26545703 | None:intergenic | 25.0% |
| !! | CAGAGATATCATAATCTTTT+TGG | + | chr3_1:26545775-26545794 | Msa0354620:intron | 25.0% |
| !! | GAGATATCATAATCTTTTTG+GGG | + | chr3_1:26545777-26545796 | Msa0354620:intron | 25.0% |
| ! | TAAGCCAAAAGAAAAAACAA+TGG | - | chr3_1:26545861-26545880 | None:intergenic | 25.0% |
| ! | AATAAAGTTTGTAGCAATTG+TGG | + | chr3_1:26545896-26545915 | Msa0354620:intron | 25.0% |
| !! | ATTTTCGTATGCTGAAATAT+TGG | - | chr3_1:26546069-26546088 | None:intergenic | 25.0% |
| ! | ATTGAAGTTAAGGAAAAGAA+AGG | + | chr3_1:26546173-26546192 | Msa0354620:CDS | 25.0% |
| ! | GTTGATGTTAAGAAAAAGAA+GGG | + | chr3_1:26546329-26546348 | Msa0354620:CDS | 25.0% |
| TGTCTATATGAGTTTAGTGT+TGG | - | chr3_1:26544192-26544211 | None:intergenic | 30.0% | |
| CTAAACTCATATAGACATTC+AGG | + | chr3_1:26544195-26544214 | Msa0354620:five_prime_UTR | 30.0% | |
| ! | TTGGTAAGTTACACTTTTCT+TGG | + | chr3_1:26544276-26544295 | Msa0354620:intron | 30.0% |
| GAGTATATATTAGAGGTTAG+AGG | - | chr3_1:26544390-26544409 | None:intergenic | 30.0% | |
| ATTTGATGCAATTGAAACAC+AGG | + | chr3_1:26544529-26544548 | Msa0354620:intron | 30.0% | |
| ACAAAGCTGACAATTATTAC+GGG | - | chr3_1:26544714-26544733 | None:intergenic | 30.0% | |
| ! | GAGGATTCATTAATTTGGAT+TGG | - | chr3_1:26545535-26545554 | None:intergenic | 30.0% |
| AACAGAACAAGGAAAGAATA+TGG | - | chr3_1:26545702-26545721 | None:intergenic | 30.0% | |
| !!! | TCGACCATTGTTTTTTCTTT+TGG | + | chr3_1:26545854-26545873 | Msa0354620:intron | 30.0% |
| !!! | TACTTTTAGTGTTGACGTTA+AGG | - | chr3_1:26545998-26546017 | None:intergenic | 30.0% |
| TATGCTGAAATATTGGATCT+TGG | - | chr3_1:26546062-26546081 | None:intergenic | 30.0% | |
| ATTTCAGCATACGAAAATGA+TGG | + | chr3_1:26546071-26546090 | Msa0354620:CDS | 30.0% | |
| GAAAATAGGAAAGATGTCAA+AGG | + | chr3_1:26546107-26546126 | Msa0354620:CDS | 30.0% | |
| AGACAATGACATTGAAGTTA+AGG | + | chr3_1:26546163-26546182 | Msa0354620:CDS | 30.0% | |
| TCGTGGTTCAAAATCTTTAA+CGG | - | chr3_1:26546201-26546220 | None:intergenic | 30.0% | |
| AGACAATGTCATAGATGTTA+AGG | + | chr3_1:26546241-26546260 | Msa0354620:CDS | 30.0% | |
| TAAGCTGAAATATTAGGTCT+TGG | - | chr3_1:26546296-26546315 | None:intergenic | 30.0% | |
| AGACCTAATATTTCAGCTTA+CGG | + | chr3_1:26546296-26546315 | Msa0354620:CDS | 30.0% | |
| CGTTGATGTTAAGAAAAAGA+AGG | + | chr3_1:26546328-26546347 | Msa0354620:CDS | 30.0% | |
| TCTCCATAAGCTGAAATATT+GGG | - | chr3_1:26546380-26546399 | None:intergenic | 30.0% | |
| TTCTCCATAAGCTGAAATAT+TGG | - | chr3_1:26546381-26546400 | None:intergenic | 30.0% | |
| ! | CATCAATGTTGATGAAAAGA+AGG | + | chr3_1:26546484-26546503 | Msa0354620:CDS | 30.0% |
| ! | CTTCTTTTCCTTAACATCTA+TGG | - | chr3_1:26546252-26546271 | None:intergenic | 30.0% |
| TAACCTGAAATATTAGGTCT+TGG | - | chr3_1:26546608-26546627 | None:intergenic | 30.0% | |
| !! | AGACCTAATATTTCAGGTTA+TGG | + | chr3_1:26546608-26546627 | Msa0354620:CDS | 30.0% |
| TCTCCATAACCTGAAATATT+AGG | - | chr3_1:26546614-26546633 | None:intergenic | 30.0% | |
| ATTGATGCAAAGGAAAAGAA+CGG | + | chr3_1:26546797-26546816 | Msa0354620:CDS | 30.0% | |
| TCTCCATATGCTGAAATATT+CGG | - | chr3_1:26547082-26547101 | None:intergenic | 30.0% | |
| TGAAATGACCAATGAATCGT+TGG | - | chr3_1:26545070-26545089 | None:intergenic | 35.0% | |
| TAGAAAATTGCAAGTGTAGG+AGG | - | chr3_1:26545094-26545113 | None:intergenic | 35.0% | |
| GCATAGAAAATTGCAAGTGT+AGG | - | chr3_1:26545097-26545116 | None:intergenic | 35.0% | |
| AACAACGATAATGCAAGTGT+AGG | - | chr3_1:26545153-26545172 | None:intergenic | 35.0% | |
| GAAATGATCTGCGAGAATAT+TGG | + | chr3_1:26545925-26545944 | Msa0354620:CDS | 35.0% | |
| TAATCTCAATACCCAAGAGA+AGG | + | chr3_1:26546016-26546035 | Msa0354620:CDS | 35.0% | |
| ! | GACATCTTTCCTATTTTCCT+TGG | - | chr3_1:26546105-26546124 | None:intergenic | 35.0% |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_1:26546146-26546165 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_1:26546146-26546165 | None:intergenic | 35.0% | |
| TCTCCGTAAGCTGAAATATT+AGG | - | chr3_1:26546302-26546321 | None:intergenic | 35.0% | |
| TAAGCTGAAATATTGGGTCT+TGG | - | chr3_1:26546374-26546393 | None:intergenic | 35.0% | |
| AGACCCAATATTTCAGCTTA+TGG | + | chr3_1:26546374-26546393 | Msa0354620:CDS | 35.0% | |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_1:26546146-26546165 | None:intergenic | 35.0% | |
| TTCTCCATAAGCTGAAATGT+TGG | - | chr3_1:26546459-26546478 | None:intergenic | 35.0% | |
| ! | TCTTGGTTCGAAATCTTTGA+TGG | - | chr3_1:26546279-26546298 | None:intergenic | 35.0% |
| GAACCAAGACCTAATATTTC+AGG | + | chr3_1:26546290-26546309 | Msa0354620:CDS | 35.0% | |
| ! | TCTTGGTTCGAAATCATTAG+TGG | - | chr3_1:26546669-26546688 | None:intergenic | 35.0% |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_1:26546146-26546165 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_1:26546146-26546165 | None:intergenic | 35.0% | |
| ATCTCCATAAGCTGAAATGT+TGG | - | chr3_1:26546771-26546790 | None:intergenic | 35.0% | |
| ! | GTTCTTTTCCTTTGCATCAA+TGG | - | chr3_1:26546798-26546817 | None:intergenic | 35.0% |
| TCTTGGTTCAAAATCCTTAG+TGG | - | chr3_1:26546825-26546844 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTTGGTCT+TGG | - | chr3_1:26546842-26546861 | None:intergenic | 35.0% | |
| AGACCAAACATTTCAGCTTA+TGG | + | chr3_1:26546842-26546861 | Msa0354620:CDS | 35.0% | |
| TCTCCATAAGCTGAAATGTT+TGG | - | chr3_1:26546146-26546165 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTTGGTCT+TGG | - | chr3_1:26546842-26546861 | None:intergenic | 35.0% | |
| AGACCAAACATTTCAGCTTA+TGG | + | chr3_1:26546842-26546861 | Msa0354620:CDS | 35.0% | |
| TTGCCATAAGCTGAAATGTT+TGG | - | chr3_1:26547004-26547023 | None:intergenic | 35.0% | |
| ATTTCAGCTTATGGCAACAA+TGG | + | chr3_1:26547007-26547026 | Msa0354620:CDS | 35.0% | |
| !! | ATTGCCTCTCTTGCTTTTCT+TGG | + | chr3_1:26544257-26544276 | Msa0354620:CDS | 40.0% |
| CTTACCAAGAAAAGCAAGAG+AGG | - | chr3_1:26544264-26544283 | None:intergenic | 40.0% | |
| TGATGCAATTGAAACACAGG+TGG | + | chr3_1:26544532-26544551 | Msa0354620:intron | 40.0% | |
| TGAAACGACCAATGAATCGT+TGG | - | chr3_1:26545126-26545145 | None:intergenic | 40.0% | |
| AACGATAATGCAAGTGTAGG+AGG | - | chr3_1:26545150-26545169 | None:intergenic | 40.0% | |
| !! | GCAAAGGGTGCTTACATATA+GGG | - | chr3_1:26545191-26545210 | None:intergenic | 40.0% |
| !! | TGCAAAGGGTGCTTACATAT+AGG | - | chr3_1:26545192-26545211 | None:intergenic | 40.0% |
| TGTAAGCACCCTTTGCATAT+AGG | + | chr3_1:26545195-26545214 | Msa0354620:intron | 40.0% | |
| GTAAGCACCCTTTGCATATA+GGG | + | chr3_1:26545196-26545215 | Msa0354620:intron | 40.0% | |
| CATGAAAGAGCAAGACATAC+CGG | + | chr3_1:26545956-26545975 | Msa0354620:CDS | 40.0% | |
| GACATACCGGAAGAAATTCA+AGG | + | chr3_1:26545969-26545988 | Msa0354620:CDS | 40.0% | |
| AGGAGTCCTTGAATTTCTTC+CGG | - | chr3_1:26545978-26545997 | None:intergenic | 40.0% | |
| AAATGATGGCACTAACACCA+AGG | + | chr3_1:26546085-26546104 | Msa0354620:CDS | 40.0% | |
| GCACTAACACCAAGGAAAAT+AGG | + | chr3_1:26546093-26546112 | Msa0354620:CDS | 40.0% | |
| TAAGCTGAAATGTTGGGTCT+TGG | - | chr3_1:26546140-26546159 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+TGG | + | chr3_1:26546140-26546159 | Msa0354620:CDS | 40.0% | |
| GTCTCCATAAGCTGAAATGT+TGG | - | chr3_1:26546147-26546166 | None:intergenic | 40.0% | |
| GTCTCCATAAGCTGAAATGT+TGG | - | chr3_1:26546147-26546166 | None:intergenic | 40.0% | |
| ! | TCTTGGTTCGAAGTCATTAG+TGG | - | chr3_1:26546435-26546454 | None:intergenic | 40.0% |
| TAAGCTGAAATGTTGGGTCT+TGG | - | chr3_1:26546140-26546159 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+TGG | + | chr3_1:26546140-26546159 | Msa0354620:CDS | 40.0% | |
| TCGTGGTTCAAAATCCTTAG+CGG | - | chr3_1:26546513-26546532 | None:intergenic | 40.0% | |
| TCTCCATAAGCCGAAATGTT+GGG | - | chr3_1:26546536-26546555 | None:intergenic | 40.0% | |
| AGACAACGCCATAGATGTTA+AGG | + | chr3_1:26546553-26546572 | Msa0354620:CDS | 40.0% | |
| TAAGCTGAAATGTTGGGTCT+TGG | - | chr3_1:26546140-26546159 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+TGG | + | chr3_1:26546140-26546159 | Msa0354620:CDS | 40.0% | |
| CTCTCCATAAGCTGAAATGT+TGG | - | chr3_1:26546693-26546712 | None:intergenic | 40.0% | |
| AGATGATGCCATTGATGCAA+AGG | + | chr3_1:26546787-26546806 | Msa0354620:CDS | 40.0% | |
| CTTGGTTCAAAATCTTCGAC+TGG | - | chr3_1:26546902-26546921 | None:intergenic | 40.0% | |
| TAAGCTGAAATGTTGGGTCT+TGG | - | chr3_1:26546140-26546159 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+CGG | + | chr3_1:26546140-26546159 | Msa0354620:CDS | 40.0% | |
| TCTCCGTAAGCTGAAATGTT+GGG | - | chr3_1:26546926-26546945 | None:intergenic | 40.0% | |
| ! | CTGCCAAAGATTTTGAACCA+AGG | + | chr3_1:26547056-26547075 | Msa0354620:CDS | 40.0% |
| TATGCTGAAATATTCGGCCT+TGG | - | chr3_1:26547076-26547095 | None:intergenic | 40.0% | |
| AGGCCGAATATTTCAGCATA+TGG | + | chr3_1:26547076-26547095 | Msa0354620:CDS | 40.0% | |
| TGCTTACATATAGGGACGGA+GGG | - | chr3_1:26545183-26545202 | None:intergenic | 45.0% | |
| ! | AGGGTGCTTACATATAGGGA+CGG | - | chr3_1:26545187-26545206 | None:intergenic | 45.0% |
| CCTCCTTCCCTATATGCAAA+GGG | - | chr3_1:26545206-26545225 | None:intergenic | 45.0% | |
| CCTTTGCATATAGGGAAGGA+GGG | + | chr3_1:26545204-26545223 | Msa0354620:intron | 45.0% | |
| !! | AAGAAAGATGAGAGCGCCTT+GGG | - | chr3_1:26545292-26545311 | None:intergenic | 45.0% |
| !! | TAAGAAAGATGAGAGCGCCT+TGG | - | chr3_1:26545293-26545312 | None:intergenic | 45.0% |
| CTCACTAAACGCCTTCTCTT+GGG | - | chr3_1:26546030-26546049 | None:intergenic | 45.0% | |
| TAAGCTGAAATGTTGGGTCG+TGG | - | chr3_1:26546218-26546237 | None:intergenic | 45.0% | |
| CGACCCAACATTTCAGCTTA+TGG | + | chr3_1:26546218-26546237 | Msa0354620:CDS | 45.0% | |
| TGAACCACGACCCAACATTT+CGG | + | chr3_1:26546211-26546230 | Msa0354620:CDS | 45.0% | |
| GTCTCCATAAGCCGAAATGT+TGG | - | chr3_1:26546537-26546556 | None:intergenic | 45.0% | |
| TGAAAAGAAGACAGCCACTG+AGG | + | chr3_1:26546730-26546749 | Msa0354620:CDS | 45.0% | |
| ! | CCACTGAGGATTTTGAACCA+CGG | + | chr3_1:26546744-26546763 | Msa0354620:CDS | 45.0% |
| GTCTCCGTAAGCTGAAATGT+TGG | - | chr3_1:26546927-26546946 | None:intergenic | 45.0% | |
| !! | CAACAATGGCATTGACACCA+AGG | + | chr3_1:26547021-26547040 | Msa0354620:CDS | 45.0% |
| !! | TGGCATTGACACCAAGGAAA+AGG | + | chr3_1:26547027-26547046 | Msa0354620:CDS | 45.0% |
| CGGCCTTGGTTCAAAATCTT+TGG | - | chr3_1:26547062-26547081 | None:intergenic | 45.0% | |
| !!! | ATTTTATTTTTTATAAAAGA+TGG | - | chr3_1:26544359-26544378 | None:intergenic | 5.0% |
| !! | TAATAATAAAAAAAAATTCA+AGG | - | chr3_1:26545319-26545338 | None:intergenic | 5.0% |
| GCGCACTACCAACGATTCAT+TGG | + | chr3_1:26545059-26545078 | Msa0354620:intron | 50.0% | |
| GCGCACTACCAACGATTCAT+TGG | + | chr3_1:26545059-26545078 | Msa0354620:intron | 50.0% | |
| GTGCTTACATATAGGGACGG+AGG | - | chr3_1:26545184-26545203 | None:intergenic | 50.0% | |
| GCACCCTTTGCATATAGGGA+AGG | + | chr3_1:26545200-26545219 | Msa0354620:intron | 50.0% | |
| CCCTTTGCATATAGGGAAGG+AGG | + | chr3_1:26545203-26545222 | Msa0354620:intron | 50.0% | |
| CCCTCCTTCCCTATATGCAA+AGG | - | chr3_1:26545207-26545226 | None:intergenic | 50.0% | |
| TAATTCGCACAGATGCCCCA+AGG | + | chr3_1:26545273-26545292 | Msa0354620:intron | 50.0% | |
| !! | AGAAAGATGAGAGCGCCTTG+GGG | - | chr3_1:26545291-26545310 | None:intergenic | 50.0% |
| CCTCACTAAACGCCTTCTCT+TGG | - | chr3_1:26546031-26546050 | None:intergenic | 50.0% | |
| !! | CCAAGAGAAGGCGTTTAGTG+AGG | + | chr3_1:26546028-26546047 | Msa0354620:CDS | 50.0% |
| TGAAAAGAAGGCAGCCGCTA+AGG | + | chr3_1:26546496-26546515 | Msa0354620:CDS | 50.0% | |
| TAAGCCGAAATGTTGGGTCG+TGG | - | chr3_1:26546530-26546549 | None:intergenic | 50.0% | |
| CGACCCAACATTTCGGCTTA+TGG | + | chr3_1:26546530-26546549 | Msa0354620:CDS | 50.0% | |
| CCGTGGTTCAAAATCCTCAG+TGG | - | chr3_1:26546747-26546766 | None:intergenic | 50.0% | |
| TAAGCTGAAATGTTGGGCCG+TGG | - | chr3_1:26546764-26546783 | None:intergenic | 50.0% | |
| CGGCCCAACATTTCAGCTTA+TGG | + | chr3_1:26546764-26546783 | Msa0354620:CDS | 50.0% | |
| GGAAAAGAACGGAGCCACTA+AGG | + | chr3_1:26546808-26546827 | Msa0354620:CDS | 50.0% | |
| ! | GGCAGCTTTCTCCTTTTCCT+TGG | - | chr3_1:26547041-26547060 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 26544132 | 26547105 | 26544132 | ID=Msa0354620;Name=Msa0354620 |
| chr3_1 | mRNA | 26544132 | 26547105 | 26544132 | ID=Msa0354620-mRNA-1;Parent=Msa0354620;Name=Msa0354620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105|1|0.5|1|0|0|2|0|415 |
| chr3_1 | exon | 26544132 | 26544278 | 26544132 | ID=Msa0354620-mRNA-1:exon:5789;Parent=Msa0354620-mRNA-1 |
| chr3_1 | exon | 26545903 | 26547105 | 26545903 | ID=Msa0354620-mRNA-1:exon:5790;Parent=Msa0354620-mRNA-1 |
| chr3_1 | five_prime_UTR | 26544132 | 26544236 | 26544132 | ID=Msa0354620-mRNA-1:five_prime_utr;Parent=Msa0354620-mRNA-1 |
| chr3_1 | CDS | 26544237 | 26544278 | 26544237 | ID=Msa0354620-mRNA-1:cds;Parent=Msa0354620-mRNA-1 |
| chr3_1 | CDS | 26545903 | 26547105 | 26545903 | ID=Msa0354620-mRNA-1:cds;Parent=Msa0354620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
