AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0448340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448340 MtrunA17_Chr3g0090471 68.094 467 45 2 1 363 1 467 0.0 550
Msa0448340 MtrunA17_Chr3g0090451 72.539 386 82 2 1 362 1 386 1.91e-178 508
Msa0448340 MtrunA17_Chr3g0090451 74.183 306 78 1 57 361 262 567 3.29e-147 428
Msa0448340 MtrunA17_Chr3g0090451 72.313 307 84 1 57 362 210 516 3.12e-144 421
Msa0448340 MtrunA17_Chr3g0090451 69.508 305 93 0 54 358 286 590 4.83e-139 407
Msa0448340 MtrunA17_Chr3g0144461 72.527 364 89 4 1 362 1 355 8.25e-168 475
Msa0448340 MtrunA17_Chr3g0144471 58.523 352 129 4 16 360 16 357 1.95e-124 362
Msa0448340 MtrunA17_Chr3g0144471 49.289 211 97 4 162 362 29 239 4.45e-49 169
Msa0448340 MtrunA17_Chr3g0138221 48.343 362 171 1 17 362 17 378 1.10e-109 328
Msa0448340 MtrunA17_Chr3g0138221 46.512 301 161 0 62 362 156 456 7.70e-87 270
Msa0448340 MtrunA17_Chr3g0138221 45.485 299 159 1 62 360 182 476 5.57e-81 255
Msa0448340 MtrunA17_Chr4g0034831 34.646 381 194 17 19 360 20 384 6.56e-49 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCCCAACATTTCGGCTTA+TGG 0.203861 3_3:-27964961 Msa0448340:CDS
TTGCCATAAGCTGAAATATT+TGG 0.225249 3_3:+27964646 None:intergenic
TTCTCCATAAGCTGAAATAT+TGG 0.263465 3_3:+27965113 None:intergenic
CGACCCAACATTTCAGCTTA+TGG 0.265141 3_3:-27965273 Msa0448340:CDS
AGACCCAATATTTCAGCTTA+TGG 0.267378 3_3:-27965117 Msa0448340:CDS
CGGCCTTGGTTCAAAATCTT+TGG 0.278983 3_3:+27964588 None:intergenic
AGACCAAATATTTCAGCTTA+TGG 0.280649 3_3:-27964649 Msa0448340:CDS
AGACCAAACATTTCAGCTTA+TGG 0.288132 3_3:-27964883 Msa0448340:CDS
AGACCCAACATTTCAGCTTA+TGG 0.288132 3_3:-27965351 Msa0448340:CDS
TCTCCATATGCTGAAATATT+CGG 0.293638 3_3:+27964568 None:intergenic
GCACTAACACCAAGGAAAAT+AGG 0.310048 3_3:-27965398 Msa0448340:CDS
ATAAGTGATGAACTAGTTAT+AGG 0.313443 3_3:-27967469 Msa0448340:five_prime_UTR
AGACCCAACATTTCAATATA+TGG 0.322761 3_3:-27964805 Msa0448340:CDS
TCTTGGTTCAAAATCTTTGA+TGG 0.333210 3_3:+27964825 None:intergenic
TCTCCATAAGCTGAAATATT+GGG 0.337654 3_3:+27965114 None:intergenic
TGAACCACGGCCCAACATTT+CGG 0.350138 3_3:-27964968 Msa0448340:CDS
TCTCCGTAAGCTGAAATATT+AGG 0.367030 3_3:+27965192 None:intergenic
GAAATGATCTGCGAGAATAT+TGG 0.381517 3_3:-27965566 Msa0448340:CDS
TATGCTGAAATATTGGATCT+TGG 0.387955 3_3:+27965432 None:intergenic
CTAAACTCATATAGACATTC+AGG 0.389028 3_3:-27967431 Msa0448340:five_prime_UTR
AGGAGTCCTTGAATTTCTTC+CGG 0.392433 3_3:+27965516 None:intergenic
AGACAATGACATTGAAGTTA+AGG 0.407426 3_3:-27965328 Msa0448340:CDS
TCTTGGTTCAAAATCCTTAG+TGG 0.409004 3_3:+27964903 None:intergenic
TATATTGAAATGTTGGGTCT+TGG 0.410700 3_3:+27964808 None:intergenic
TCTCCATATATTGAAATGTT+GGG 0.412178 3_3:+27964802 None:intergenic
TAAGCTGAAATATTTGGTCT+TGG 0.412506 3_3:+27964652 None:intergenic
AGGCCGAATATTTCAGCATA+TGG 0.414557 3_3:-27964571 Msa0448340:CDS
AGACAATGTCATAGATGTTA+AGG 0.416032 3_3:-27965250 Msa0448340:CDS
TAAGTTGAAATGTTGGGTCT+TGG 0.419876 3_3:+27964730 None:intergenic
TCTCCATAAGCTGAAATGTT+TGG 0.419967 3_3:+27964880 None:intergenic
TAAGCTGAAATGTTTGGTCT+TGG 0.428249 3_3:+27964886 None:intergenic
TTCTCCATATATTGAAATGT+TGG 0.437728 3_3:+27964801 None:intergenic
CCTCACTAAACGCCTTCTCT+TGG 0.445647 3_3:+27965463 None:intergenic
TAAGCTGAAATGTTGGGTCT+TGG 0.452926 3_3:+27965042 None:intergenic
TAAGCTGAAATATTGGGTCT+TGG 0.456037 3_3:+27965120 None:intergenic
TAAGCTGAAATATTAGGTCT+TGG 0.457286 3_3:+27965198 None:intergenic
TAAGCTGAAATGTTGGGTCT+TGG 0.464437 3_3:+27965354 None:intergenic
CTCACTAAACGCCTTCTCTT+GGG 0.465546 3_3:+27965464 None:intergenic
GGAAAAGAGCGGAGCCACTA+AGG 0.466210 3_3:-27964917 Msa0448340:CDS
TCGTGGTTCAAAATCTTTAA+CGG 0.469737 3_3:+27965293 None:intergenic
CTTGGTTCAAAATCTTCGAC+TGG 0.470140 3_3:+27964748 None:intergenic
AGACCTAATATTTCAGCTTA+CGG 0.471619 3_3:-27965195 Msa0448340:CDS
TATGCTGAAATATTCGGCCT+TGG 0.481023 3_3:+27964574 None:intergenic
TCTTGGTTCGAAAACATTAG+TGG 0.482644 3_3:+27965059 None:intergenic
AGACCCAACATTTCAGCTTA+CGG 0.484733 3_3:-27965039 Msa0448340:CDS
AGACCCAACATTTCAACTTA+CGG 0.485543 3_3:-27964727 Msa0448340:CDS
TGACATTGACACCAAGGAAA+AGG 0.493430 3_3:-27964620 Msa0448340:CDS
GTCTCCGTAAGTTGAAATGT+TGG 0.493577 3_3:+27964723 None:intergenic
AATAAAGTTTGTAGCAATTG+TGG 0.494400 3_3:-27965595 Msa0448340:intron
TCTCCGTAAGTTGAAATGTT+GGG 0.496654 3_3:+27964724 None:intergenic
CATTGATGTTGATGAAAAGA+AGG 0.499460 3_3:-27964851 Msa0448340:CDS
TCTCCATAAGCTGAAATGTT+GGG 0.499953 3_3:+27965348 None:intergenic
TCTCCATAAGCCGAAATGTT+GGG 0.501285 3_3:+27964958 None:intergenic
CTCTCCGTAAGCTGAAATGT+TGG 0.503472 3_3:+27965035 None:intergenic
CATCGATGTTAATGAAAAGA+AGG 0.503693 3_3:-27965007 Msa0448340:CDS
TCTCCGTAAGCTGAAATGTT+GGG 0.513710 3_3:+27965036 None:intergenic
TGTCTATATGAGTTTAGTGT+TGG 0.522018 3_3:+27967437 None:intergenic
TCTCCATAAGCTGAAATGTT+GGG 0.525189 3_3:+27965270 None:intergenic
CATGAAAGAGCAAGACATAC+CGG 0.535405 3_3:-27965535 Msa0448340:CDS
GTCTCCATAAGCTGAAATGT+TGG 0.536347 3_3:+27965269 None:intergenic
GTCTCCATAAGCTGAAATGT+TGG 0.536347 3_3:+27965347 None:intergenic
ATTGAAGTTAAGGAAAAGAA+AGG 0.540680 3_3:-27965318 Msa0448340:CDS
ATTTCAGCATACGAAAATGA+TGG 0.543256 3_3:-27965420 Msa0448340:CDS
ATCTCCATAAGCCGAAATGT+TGG 0.558155 3_3:+27964957 None:intergenic
GACATACCGGAAGAAATTCA+AGG 0.576602 3_3:-27965522 Msa0448340:CDS
TAATCTCAATACCCAAGAGA+AGG 0.591469 3_3:-27965475 Msa0448340:CDS
TAAGCTGAAATGTTGGGTCG+TGG 0.596199 3_3:+27965276 None:intergenic
AGATGATGCCATTGATGCTA+AGG 0.596256 3_3:-27964938 Msa0448340:CDS
TAAGCCGAAATGTTGGGCCG+TGG 0.596388 3_3:+27964964 None:intergenic
CTTACCAAGAAAAGCAAGAG+AGG 0.596916 3_3:+27967365 None:intergenic
GAAAATAGGAAAGATGTCAA+AGG 0.620259 3_3:-27965384 Msa0448340:CDS
ATTGATGTTGATGAAAAGAA+GGG 0.631130 3_3:-27964850 Msa0448340:CDS
CCAAGAGAAGGCGTTTAGTG+AGG 0.645806 3_3:-27965463 Msa0448340:CDS
CAACAATGACATTGACACCA+AGG 0.659301 3_3:-27964626 Msa0448340:CDS
TGAAAAGAAGGCAGCCACTG+AGG 0.664629 3_3:-27964995 Msa0448340:CDS
CCGTGGTTCAAAATCCTCAG+TGG 0.686559 3_3:+27964981 None:intergenic
ATTGATGCTAAGGAAAAGAG+CGG 0.694475 3_3:-27964928 Msa0448340:CDS
AAATGATGGCACTAACACCA+AGG 0.696723 3_3:-27965406 Msa0448340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAGTAATATTTAAATCT+GGG + chr3_3:27966005-27966024 None:intergenic 10.0%
!! ATTTAAGTAATATTTAAATC+TGG + chr3_3:27966006-27966025 None:intergenic 10.0%
!!! TTTATATATTATAGAAGTAT+AGG - chr3_3:27966135-27966154 Msa0448340:intron 10.0%
!!! TCTTAGTTTTTTTTTTTTAG+TGG - chr3_3:27964731-27964750 Msa0448340:CDS 15.0%
!! TTAAGTAATATTTAAATCTG+GGG + chr3_3:27966004-27966023 None:intergenic 15.0%
!! ATAAATTCGAAAAATTAAAG+AGG + chr3_3:27966120-27966139 None:intergenic 15.0%
!! AAAAAAAAAAAAACAGAACA+AGG + chr3_3:27966279-27966298 None:intergenic 15.0%
!!! TTTTTTTTTTAGTGGTTTCT+TGG - chr3_3:27964739-27964758 Msa0448340:CDS 20.0%
!! GACAATTAAAAAGTAACATA+TGG + chr3_3:27964844-27964863 None:intergenic 20.0%
!!! TAGACATAGTATTGATTAAT+GGG + chr3_3:27965285-27965304 None:intergenic 20.0%
!!! ATAGACATAGTATTGATTAA+TGG + chr3_3:27965286-27965305 None:intergenic 20.0%
!!! TAGACATAGTATTGATTAAT+GGG + chr3_3:27965285-27965304 None:intergenic 20.0%
!!! ATAGACATAGTATTGATTAA+TGG + chr3_3:27965286-27965305 None:intergenic 20.0%
!! GAATTAATCAATGACTAATA+AGG - chr3_3:27965463-27965482 Msa0448340:CDS 20.0%
!! AATGACTAATAAGGTTAATT+TGG - chr3_3:27965472-27965491 Msa0448340:CDS 20.0%
!! AAATGAAAAGTAAAAACGAA+AGG - chr3_3:27966068-27966087 Msa0448340:intron 20.0%
!! AATGAAAAGTAAAAACGAAA+GGG - chr3_3:27966069-27966088 Msa0448340:intron 20.0%
!! TTAAAGAGGATTCATTAATT+TGG + chr3_3:27966106-27966125 None:intergenic 20.0%
!!! AGAGATATCATAATCTTTTT+GGG - chr3_3:27966342-27966361 Msa0448340:intron 20.0%
! ATAAGTGATGAACTAGTTAT+AGG - chr3_3:27964589-27964608 Msa0448340:CDS 25.0%
! AGTATATATTAGAGGTTAGA+GGG + chr3_3:27964821-27964840 None:intergenic 25.0%
! ACATATGGAGTATATATTAG+AGG + chr3_3:27964829-27964848 None:intergenic 25.0%
! GACAACTATAAAGTAACAAA+TGG - chr3_3:27965087-27965106 Msa0448340:CDS 25.0%
! TACAAAGCTGACAATTATTA+CGG + chr3_3:27965147-27965166 None:intergenic 25.0%
!! TTGAAAGTATGATTTAGTGA+AGG + chr3_3:27965970-27965989 None:intergenic 25.0%
! ACTAAATCATACTTTCAACT+TGG - chr3_3:27965972-27965991 Msa0448340:intron 25.0%
! ATGGAATATGATAAAGAGTT+GGG + chr3_3:27966249-27966268 None:intergenic 25.0%
! TATGGAATATGATAAAGAGT+TGG + chr3_3:27966250-27966269 None:intergenic 25.0%
!! CAGAGATATCATAATCTTTT+TGG - chr3_3:27966341-27966360 Msa0448340:intron 25.0%
!! GAGATATCATAATCTTTTTG+GGG - chr3_3:27966343-27966362 Msa0448340:intron 25.0%
!! AGATATCATAATCTTTTTGG+GGG - chr3_3:27966344-27966363 Msa0448340:intron 25.0%
! TAAGCCAAAAGAAAAAACAA+TGG + chr3_3:27966428-27966447 None:intergenic 25.0%
! AATAAAGTTTGTAGCAATTG+TGG - chr3_3:27966463-27966482 Msa0448340:intron 25.0%
!! ATTTTCGTATGCTGAAATAT+TGG + chr3_3:27966636-27966655 None:intergenic 25.0%
! ATTGAAGTTAAGGAAAAGAA+AGG - chr3_3:27966740-27966759 Msa0448340:intron 25.0%
! GTTGATGTTAAGAAAAAGAA+GGG - chr3_3:27966896-27966915 Msa0448340:intron 25.0%
!! ATTGATGTTGATGAAAAGAA+GGG - chr3_3:27967208-27967227 Msa0448340:intron 25.0%
! TCTCCATATATTGAAATGTT+GGG + chr3_3:27967259-27967278 None:intergenic 25.0%
! TTCTCCATATATTGAAATGT+TGG + chr3_3:27967260-27967279 None:intergenic 25.0%
TGTCTATATGAGTTTAGTGT+TGG + chr3_3:27964624-27964643 None:intergenic 30.0%
CTAAACTCATATAGACATTC+AGG - chr3_3:27964627-27964646 Msa0448340:CDS 30.0%
! TTGGTAAGTTACACTTTTCT+TGG - chr3_3:27964708-27964727 Msa0448340:CDS 30.0%
GAGTATATATTAGAGGTTAG+AGG + chr3_3:27964822-27964841 None:intergenic 30.0%
ATTTGATGCAATTGAAACAC+AGG - chr3_3:27964961-27964980 Msa0448340:CDS 30.0%
ACAAAGCTGACAATTATTAC+GGG + chr3_3:27965146-27965165 None:intergenic 30.0%
ACCCTTTGCATCTAATAAAA+GGG - chr3_3:27965747-27965766 Msa0448340:intron 30.0%
! ACCCTTTTATTAGATGCAAA+GGG + chr3_3:27965751-27965770 None:intergenic 30.0%
!! ATAAAAGGGTGCTTACATAT+AGG - chr3_3:27965761-27965780 Msa0448340:intron 30.0%
!! TAAAAGGGTGCTTACATATA+GGG - chr3_3:27965762-27965781 Msa0448340:intron 30.0%
! GAGGATTCATTAATTTGGAT+TGG + chr3_3:27966101-27966120 None:intergenic 30.0%
AACAGAACAAGGAAAGAATA+TGG + chr3_3:27966268-27966287 None:intergenic 30.0%
!!! TCGACCATTGTTTTTTCTTT+TGG - chr3_3:27966421-27966440 Msa0448340:intron 30.0%
!!! TACTTTTAGTGTTGACGTTA+AGG + chr3_3:27966565-27966584 None:intergenic 30.0%
TATGCTGAAATATTGGATCT+TGG + chr3_3:27966629-27966648 None:intergenic 30.0%
ATTTCAGCATACGAAAATGA+TGG - chr3_3:27966638-27966657 Msa0448340:intron 30.0%
GAAAATAGGAAAGATGTCAA+AGG - chr3_3:27966674-27966693 Msa0448340:intron 30.0%
AGACAATGACATTGAAGTTA+AGG - chr3_3:27966730-27966749 Msa0448340:intron 30.0%
TCGTGGTTCAAAATCTTTAA+CGG + chr3_3:27966768-27966787 None:intergenic 30.0%
AGACAATGTCATAGATGTTA+AGG - chr3_3:27966808-27966827 Msa0448340:intron 30.0%
TAAGCTGAAATATTAGGTCT+TGG + chr3_3:27966863-27966882 None:intergenic 30.0%
AGACCTAATATTTCAGCTTA+CGG - chr3_3:27966863-27966882 Msa0448340:intron 30.0%
CGTTGATGTTAAGAAAAAGA+AGG - chr3_3:27966895-27966914 Msa0448340:intron 30.0%
TCTCCATAAGCTGAAATATT+GGG + chr3_3:27966947-27966966 None:intergenic 30.0%
TTCTCCATAAGCTGAAATAT+TGG + chr3_3:27966948-27966967 None:intergenic 30.0%
CATCGATGTTAATGAAAAGA+AGG - chr3_3:27967051-27967070 Msa0448340:intron 30.0%
! CATTGATGTTGATGAAAAGA+AGG - chr3_3:27967207-27967226 Msa0448340:intron 30.0%
TCTTGGTTCAAAATCTTTGA+TGG + chr3_3:27967236-27967255 None:intergenic 30.0%
TATATTGAAATGTTGGGTCT+TGG + chr3_3:27967253-27967272 None:intergenic 30.0%
AGACCCAACATTTCAATATA+TGG - chr3_3:27967253-27967272 Msa0448340:intron 30.0%
TAAGCTGAAATATTTGGTCT+TGG + chr3_3:27967409-27967428 None:intergenic 30.0%
AGACCAAATATTTCAGCTTA+TGG - chr3_3:27967409-27967428 Msa0448340:exon 30.0%
TTGCCATAAGCTGAAATATT+TGG + chr3_3:27967415-27967434 None:intergenic 30.0%
TCTCCATATGCTGAAATATT+CGG + chr3_3:27967493-27967512 None:intergenic 30.0%
TGAAATGACCAATGAATCGT+TGG + chr3_3:27965615-27965634 None:intergenic 35.0%
TAGAAAATTGCAAGTGTAGG+AGG + chr3_3:27965639-27965658 None:intergenic 35.0%
GCATAGAAAATTGCAAGTGT+AGG + chr3_3:27965642-27965661 None:intergenic 35.0%
AACAACGATAATGCAAGTGT+AGG + chr3_3:27965698-27965717 None:intergenic 35.0%
CACCCTTTGCATCTAATAAA+AGG - chr3_3:27965746-27965765 Msa0448340:intron 35.0%
! CACCCTTTTATTAGATGCAA+AGG + chr3_3:27965752-27965771 None:intergenic 35.0%
GAAATGATCTGCGAGAATAT+TGG - chr3_3:27966492-27966511 Msa0448340:intron 35.0%
TAATCTCAATACCCAAGAGA+AGG - chr3_3:27966583-27966602 Msa0448340:intron 35.0%
! GACATCTTTCCTATTTTCCT+TGG + chr3_3:27966672-27966691 None:intergenic 35.0%
TCTCCATAAGCTGAAATGTT+GGG + chr3_3:27966713-27966732 None:intergenic 35.0%
TCTCCATAAGCTGAAATGTT+GGG + chr3_3:27966713-27966732 None:intergenic 35.0%
TCTCCGTAAGCTGAAATATT+AGG + chr3_3:27966869-27966888 None:intergenic 35.0%
TAAGCTGAAATATTGGGTCT+TGG + chr3_3:27966941-27966960 None:intergenic 35.0%
AGACCCAATATTTCAGCTTA+TGG - chr3_3:27966941-27966960 Msa0448340:intron 35.0%
! TCTTGGTTCGAAAACATTAG+TGG + chr3_3:27967002-27967021 None:intergenic 35.0%
ATTGATGCTAAGGAAAAGAG+CGG - chr3_3:27967130-27967149 Msa0448340:intron 35.0%
TCTTGGTTCAAAATCCTTAG+TGG + chr3_3:27967158-27967177 None:intergenic 35.0%
TAAGCTGAAATGTTTGGTCT+TGG + chr3_3:27967175-27967194 None:intergenic 35.0%
AGACCAAACATTTCAGCTTA+TGG - chr3_3:27967175-27967194 Msa0448340:intron 35.0%
TCTCCATAAGCTGAAATGTT+TGG + chr3_3:27966713-27966732 None:intergenic 35.0%
! TAAGTTGAAATGTTGGGTCT+TGG + chr3_3:27967331-27967350 None:intergenic 35.0%
AGACCCAACATTTCAACTTA+CGG - chr3_3:27967331-27967350 Msa0448340:intron 35.0%
! TCTCCGTAAGTTGAAATGTT+GGG + chr3_3:27967337-27967356 None:intergenic 35.0%
!! ATTGCCTCTCTTGCTTTTCT+TGG - chr3_3:27964689-27964708 Msa0448340:CDS 40.0%
CTTACCAAGAAAAGCAAGAG+AGG + chr3_3:27964696-27964715 None:intergenic 40.0%
TGATGCAATTGAAACACAGG+TGG - chr3_3:27964964-27964983 Msa0448340:CDS 40.0%
TGAAACGACCAATGAATCGT+TGG + chr3_3:27965671-27965690 None:intergenic 40.0%
AACGATAATGCAAGTGTAGG+AGG + chr3_3:27965695-27965714 None:intergenic 40.0%
!! GCAAAGGGTGCTTACATATA+GGG + chr3_3:27965736-27965755 None:intergenic 40.0%
!! TGCAAAGGGTGCTTACATAT+AGG + chr3_3:27965737-27965756 None:intergenic 40.0%
TGCTTACATATAGGGAAGGA+GGG - chr3_3:27965770-27965789 Msa0448340:intron 40.0%
CATGAAAGAGCAAGACATAC+CGG - chr3_3:27966523-27966542 Msa0448340:intron 40.0%
GACATACCGGAAGAAATTCA+AGG - chr3_3:27966536-27966555 Msa0448340:intron 40.0%
AGGAGTCCTTGAATTTCTTC+CGG + chr3_3:27966545-27966564 None:intergenic 40.0%
AAATGATGGCACTAACACCA+AGG - chr3_3:27966652-27966671 Msa0448340:intron 40.0%
GCACTAACACCAAGGAAAAT+AGG - chr3_3:27966660-27966679 Msa0448340:intron 40.0%
TAAGCTGAAATGTTGGGTCT+TGG + chr3_3:27966707-27966726 None:intergenic 40.0%
AGACCCAACATTTCAGCTTA+TGG - chr3_3:27966707-27966726 Msa0448340:intron 40.0%
GTCTCCATAAGCTGAAATGT+TGG + chr3_3:27966714-27966733 None:intergenic 40.0%
GTCTCCATAAGCTGAAATGT+TGG + chr3_3:27966714-27966733 None:intergenic 40.0%
TAAGCTGAAATGTTGGGTCT+TGG + chr3_3:27966707-27966726 None:intergenic 40.0%
AGACCCAACATTTCAGCTTA+CGG - chr3_3:27966707-27966726 Msa0448340:intron 40.0%
TCTCCGTAAGCTGAAATGTT+GGG + chr3_3:27967025-27967044 None:intergenic 40.0%
TCTCCATAAGCCGAAATGTT+GGG + chr3_3:27967103-27967122 None:intergenic 40.0%
ATCTCCATAAGCCGAAATGT+TGG + chr3_3:27967104-27967123 None:intergenic 40.0%
AGATGATGCCATTGATGCTA+AGG - chr3_3:27967120-27967139 Msa0448340:intron 40.0%
! GCTCTTTTCCTTAGCATCAA+TGG + chr3_3:27967131-27967150 None:intergenic 40.0%
CTTGGTTCAAAATCTTCGAC+TGG + chr3_3:27967313-27967332 None:intergenic 40.0%
! GTCTCCGTAAGTTGAAATGT+TGG + chr3_3:27967338-27967357 None:intergenic 40.0%
CAACAATGACATTGACACCA+AGG - chr3_3:27967432-27967451 Msa0448340:five_prime_UTR 40.0%
TGACATTGACACCAAGGAAA+AGG - chr3_3:27967438-27967457 Msa0448340:five_prime_UTR 40.0%
! CTGCCAAAGATTTTGAACCA+AGG - chr3_3:27967467-27967486 Msa0448340:five_prime_UTR 40.0%
TATGCTGAAATATTCGGCCT+TGG + chr3_3:27967487-27967506 None:intergenic 40.0%
AGGCCGAATATTTCAGCATA+TGG - chr3_3:27967487-27967506 Msa0448340:five_prime_UTR 40.0%
TGCTTACATATAGGGACGGA+GGG + chr3_3:27965728-27965747 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+CGG + chr3_3:27965766-27965785 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+AGG - chr3_3:27965766-27965785 Msa0448340:intron 45.0%
GTGCTTACATATAGGGAAGG+AGG - chr3_3:27965769-27965788 Msa0448340:intron 45.0%
!! AAGAAAGATGAGAGCGCCTT+GGG + chr3_3:27965858-27965877 None:intergenic 45.0%
!! TAAGAAAGATGAGAGCGCCT+TGG + chr3_3:27965859-27965878 None:intergenic 45.0%
CTCACTAAACGCCTTCTCTT+GGG + chr3_3:27966597-27966616 None:intergenic 45.0%
TAAGCTGAAATGTTGGGTCG+TGG + chr3_3:27966785-27966804 None:intergenic 45.0%
CGACCCAACATTTCAGCTTA+TGG - chr3_3:27966785-27966804 Msa0448340:intron 45.0%
CTCTCCGTAAGCTGAAATGT+TGG + chr3_3:27967026-27967045 None:intergenic 45.0%
! CCACTGAGGATTTTGAACCA+CGG - chr3_3:27967077-27967096 Msa0448340:intron 45.0%
CGGCCTTGGTTCAAAATCTT+TGG + chr3_3:27967473-27967492 None:intergenic 45.0%
!!! ATTTTATTTTTTATAAAAGA+TGG + chr3_3:27964791-27964810 None:intergenic 5.0%
!! TAATAATAAAAAAAAATTCA+AGG + chr3_3:27965885-27965904 None:intergenic 5.0%
GCGCACTACCAACGATTCAT+TGG - chr3_3:27965604-27965623 Msa0448340:intron 50.0%
GCGCACTACCAACGATTCAT+TGG - chr3_3:27965604-27965623 Msa0448340:intron 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_3:27965729-27965748 None:intergenic 50.0%
TAATTCGCACAGATGCCCCA+AGG - chr3_3:27965839-27965858 Msa0448340:intron 50.0%
!! AGAAAGATGAGAGCGCCTTG+GGG + chr3_3:27965857-27965876 None:intergenic 50.0%
CCTCACTAAACGCCTTCTCT+TGG + chr3_3:27966598-27966617 None:intergenic 50.0%
!! CCAAGAGAAGGCGTTTAGTG+AGG - chr3_3:27966595-27966614 Msa0448340:intron 50.0%
TGAAAAGAAGGCAGCCACTG+AGG - chr3_3:27967063-27967082 Msa0448340:intron 50.0%
CCGTGGTTCAAAATCCTCAG+TGG + chr3_3:27967080-27967099 None:intergenic 50.0%
TGAACCACGGCCCAACATTT+CGG - chr3_3:27967090-27967109 Msa0448340:intron 50.0%
! GGCAGCTTTCTCCTTTTCCT+TGG + chr3_3:27967452-27967471 None:intergenic 50.0%
TAAGCCGAAATGTTGGGCCG+TGG + chr3_3:27967097-27967116 None:intergenic 55.0%
CGGCCCAACATTTCGGCTTA+TGG - chr3_3:27967097-27967116 Msa0448340:intron 55.0%
GGAAAAGAGCGGAGCCACTA+AGG - chr3_3:27967141-27967160 Msa0448340:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 27964564 27967516 27964564 ID=Msa0448340;Name=Msa0448340
chr3_3 mRNA 27964564 27967516 27964564 ID=Msa0448340-mRNA-1;Parent=Msa0448340;Name=Msa0448340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105|1|0.5|1|0|0|2|0|363
chr3_3 exon 27964564 27965610 27964564 ID=Msa0448340-mRNA-1:exon:5432;Parent=Msa0448340-mRNA-1
chr3_3 exon 27967370 27967516 27967370 ID=Msa0448340-mRNA-1:exon:5431;Parent=Msa0448340-mRNA-1
chr3_3 five_prime_UTR 27967412 27967516 27967412 ID=Msa0448340-mRNA-1:five_prime_utr;Parent=Msa0448340-mRNA-1
chr3_3 CDS 27967370 27967411 27967370 ID=Msa0448340-mRNA-1:cds;Parent=Msa0448340-mRNA-1
chr3_3 CDS 27964564 27965610 27964564 ID=Msa0448340-mRNA-1:cds;Parent=Msa0448340-mRNA-1
Gene Sequence

>Msa0448340

ATGAGAACTGCTCTTGCTTTATTGCCTCTCTTGCTTTTCTTGTTTGTAGCAATTGTGGAATCAAGAAATGATCTGCGAGAATATTGGAAACTAGTCATGAAAGAGCAAGACATACCGGAAGAAATTCAAGGACTCCTTAACGTCAACACTAAAAGTAATCTCAATACCCAAGAGAAGGCGTTTAGTGAGGATATTGAACCAAGATCCAATATTTCAGCATACGAAAATGATGGCACTAACACCAAGGAAAATAGGAAAGATGTCAAAGGTTTTGAACCAAGACCCAACATTTCAGCTTATGGAGACAATGACATTGAAGTTAAGGAAAAGAAAGGTGCCGTTAAAGATTTTGAACCACGACCCAACATTTCAGCTTATGGAGACAATGTCATAGATGTTAAGGAAAAGAAGAAAGTCGTCAAAGATTTCGAACCAAGACCTAATATTTCAGCTTACGGAGACAATGTCGTTGATGTTAAGAAAAAGAAGGGAGTCACTAAAGATTTTGAACCAAGACCCAATATTTCAGCTTATGGAGAAAATGACAATGATGTCAAAGAAAAGAAGCAAACCACTAATGTTTTCGAACCAAGACCCAACATTTCAGCTTACGGAGAGAATGACATCGATGTTAATGAAAAGAAGGCAGCCACTGAGGATTTTGAACCACGGCCCAACATTTCGGCTTATGGAGATGATGCCATTGATGCTAAGGAAAAGAGCGGAGCCACTAAGGATTTTGAACCAAGACCAAACATTTCAGCTTATGGAGACAATGACATTGATGTTGATGAAAAGAAGGGAGCCATCAAAGATTTTGAACCAAGACCCAACATTTCAATATATGGAGAAAATGTCATTAATGATGATGAAACAAAGAAACCAGTCGAAGATTTTGAACCAAGACCCAACATTTCAACTTACGGAGACAATGACATTGATGACAGAAAAAAGAATAATGTCATTTCAGATTTTGAACCAAGACCAAATATTTCAGCTTATGGCAACAATGACATTGACACCAAGGAAAAGGAGAAAGCTGCCAAAGATTTTGAACCAAGGCCGAATATTTCAGCATATGGAGAAAAA

Protein sequence

>Msa0448340

MRTALALLPLLLFLFVAIVESRNDLREYWKLVMKEQDIPEEIQGLLNVNTKSNLNTQEKAFSEDIEPRSNISAYENDGTNTKENRKDVKGFEPRPNISAYGDNDIEVKEKKGAVKDFEPRPNISAYGDNVIDVKEKKKVVKDFEPRPNISAYGDNVVDVKKKKGVTKDFEPRPNISAYGENDNDVKEKKQTTNVFEPRPNISAYGENDIDVNEKKAATEDFEPRPNISAYGDDAIDAKEKSGATKDFEPRPNISAYGDNDIDVDEKKGAIKDFEPRPNISIYGENVINDDETKKPVEDFEPRPNISTYGDNDIDDRKKNNVISDFEPRPNISAYGNNDIDTKEKEKAAKDFEPRPNISAYGEK