Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448340 | XP_003599531.1 | 62.848 | 323 | 68 | 1 | 65 | 335 | 169 | 491 | 6.42e-122 | 371 |
| Msa0448340 | XP_003599531.1 | 67.982 | 228 | 73 | 0 | 57 | 284 | 265 | 492 | 2.40e-93 | 298 |
| Msa0448340 | XP_003599531.1 | 69.462 | 465 | 38 | 2 | 1 | 361 | 1 | 465 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448340 | sp|P17772|OSS2_PEA | 51.053 | 190 | 66 | 4 | 15 | 204 | 17 | 179 | 1.41e-52 | 175 |
| Msa0448340 | sp|P17772|OSS2_PEA | 44.118 | 170 | 88 | 2 | 139 | 308 | 17 | 179 | 1.24e-36 | 134 |
| Msa0448340 | sp|P17772|OSS2_PEA | 54.918 | 122 | 51 | 1 | 213 | 334 | 62 | 179 | 3.02e-36 | 132 |
| Msa0448340 | sp|P17772|OSS2_PEA | 53.226 | 124 | 54 | 1 | 237 | 360 | 60 | 179 | 2.77e-35 | 130 |
| Msa0448340 | sp|P17772|OSS2_PEA | 52.419 | 124 | 55 | 1 | 133 | 256 | 60 | 179 | 3.36e-35 | 130 |
| Msa0448340 | sp|P17772|OSS2_PEA | 52.577 | 97 | 46 | 0 | 265 | 361 | 62 | 158 | 1.56e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448340 | G7IZL7 | 62.848 | 323 | 68 | 1 | 65 | 335 | 169 | 491 | 3.06e-122 | 371 |
| Msa0448340 | G7IZL7 | 67.982 | 228 | 73 | 0 | 57 | 284 | 265 | 492 | 1.15e-93 | 298 |
| Msa0448340 | G7IZL7 | 69.462 | 465 | 38 | 2 | 1 | 361 | 1 | 465 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0448340 | 0.817360 | 3.434396e-52 | -8.615850e-47 |
| Msa0001960 | Msa0448340 | 0.808076 | 3.700036e-50 | -8.615850e-47 |
| Msa0027820 | Msa0448340 | 0.811394 | 7.155686e-51 | -8.615850e-47 |
| Msa0074600 | Msa0448340 | 0.830908 | 2.253006e-55 | -8.615850e-47 |
| Msa0126040 | Msa0448340 | 0.801085 | 1.063579e-48 | -8.615850e-47 |
| Msa0195100 | Msa0448340 | 0.807950 | 3.934794e-50 | -8.615850e-47 |
| Msa0225100 | Msa0448340 | 0.820642 | 6.157743e-53 | -8.615850e-47 |
| Msa0225680 | Msa0448340 | 0.804383 | 2.217968e-49 | -8.615850e-47 |
| Msa0225860 | Msa0448340 | 0.808328 | 3.268900e-50 | -8.615850e-47 |
| Msa0230320 | Msa0448340 | 0.810216 | 1.287115e-50 | -8.615850e-47 |
| Msa0367870 | Msa0448340 | 0.827550 | 1.470704e-54 | -8.615850e-47 |
| Msa0389770 | Msa0448340 | 0.811107 | 8.258041e-51 | -8.615850e-47 |
| Msa0401520 | Msa0448340 | 0.860614 | 1.826700e-63 | -8.615850e-47 |
| Msa0434290 | Msa0448340 | 0.832817 | 7.610667e-56 | -8.615850e-47 |
| Msa0448340 | Msa0460590 | 0.811796 | 5.851513e-51 | -8.615850e-47 |
| Msa0448340 | Msa0483100 | 0.802046 | 6.756470e-49 | -8.615850e-47 |
| Msa0448340 | Msa0522150 | 0.803412 | 3.530077e-49 | -8.615850e-47 |
| Msa0448340 | Msa0528570 | 0.804864 | 1.760196e-49 | -8.615850e-47 |
| Msa0448340 | Msa0568800 | 0.823932 | 1.061113e-53 | -8.615850e-47 |
| Msa0448340 | Msa0616070 | 0.801075 | 1.068312e-48 | -8.615850e-47 |
| Msa0448340 | Msa0659120 | 0.807594 | 4.684115e-50 | -8.615850e-47 |
| Msa0448340 | Msa0738340 | 0.821626 | 3.653260e-53 | -8.615850e-47 |
| Msa0448340 | Msa0876930 | 0.807245 | 5.553783e-50 | -8.615850e-47 |
| Msa0448340 | Msa0899970 | 0.805953 | 1.040807e-49 | -8.615850e-47 |
| Msa0448340 | Msa0965080 | 0.813224 | 2.851634e-51 | -8.615850e-47 |
| Msa0448340 | Msa0965290 | 0.819233 | 1.293062e-52 | -8.615850e-47 |
| Msa0448340 | Msa0967870 | 0.810554 | 1.088270e-50 | -8.615850e-47 |
| Msa0448340 | Msa0999680 | 0.821306 | 4.331958e-53 | -8.615850e-47 |
| Msa0448340 | Msa1019150 | 0.806606 | 7.581242e-50 | -8.615850e-47 |
| Msa0448340 | Msa1066670 | 0.805493 | 1.300105e-49 | -8.615850e-47 |
| Msa0448340 | Msa1111380 | 0.807173 | 5.753169e-50 | -8.615850e-47 |
| Msa0448340 | Msa1131050 | 0.809361 | 1.965432e-50 | -8.615850e-47 |
| Msa0448340 | Msa1147740 | 0.811305 | 7.482098e-51 | -8.615850e-47 |
| Msa0448340 | Msa1186020 | 0.813932 | 1.992505e-51 | -8.615850e-47 |
| Msa0448340 | Msa1193170 | 0.801800 | 7.590623e-49 | -8.615850e-47 |
| Msa0448340 | Msa1284900 | 0.800693 | 1.278619e-48 | -8.615850e-47 |
| Msa0448340 | Msa1297230 | 0.807122 | 5.896067e-50 | -8.615850e-47 |
| Msa0448340 | Msa1305410 | 0.804365 | 2.237320e-49 | -8.615850e-47 |
| Msa0448340 | Msa1355450 | 0.819103 | 1.384173e-52 | -8.615850e-47 |
| Msa0448340 | Msa1397740 | 0.802956 | 4.385255e-49 | -8.615850e-47 |
| Msa0448340 | Msa1405030 | 0.803629 | 3.182239e-49 | -8.615850e-47 |
| Msa0448340 | Msa1422420 | 0.801426 | 9.053574e-49 | -8.615850e-47 |
| Msa0448340 | Msa1423780 | 0.823020 | 1.734474e-53 | -8.615850e-47 |
| Msa0448340 | Msa1425090 | 0.809780 | 1.597532e-50 | -8.615850e-47 |
| Msa0448340 | Msa1427200 | 0.801261 | 9.788657e-49 | -8.615850e-47 |
| Msa0448340 | Msa1459100 | 0.803295 | 3.731605e-49 | -8.615850e-47 |
| Msa0244640 | Msa0448340 | 0.819402 | 1.183353e-52 | -8.615850e-47 |
| Msa0251710 | Msa0448340 | 0.830624 | 2.644632e-55 | -8.615850e-47 |
| Msa0266180 | Msa0448340 | 0.813564 | 2.401065e-51 | -8.615850e-47 |
| Msa0283330 | Msa0448340 | 0.808975 | 2.377640e-50 | -8.615850e-47 |
| Msa0287740 | Msa0448340 | 0.815190 | 1.049675e-51 | -8.615850e-47 |
| Msa0290720 | Msa0448340 | 0.823901 | 1.079113e-53 | -8.615850e-47 |
| Msa0308630 | Msa0448340 | 0.821374 | 4.176331e-53 | -8.615850e-47 |
| Msa0321620 | Msa0448340 | 0.824952 | 6.105851e-54 | -8.615850e-47 |
| Msa0337580 | Msa0448340 | 0.819200 | 1.315910e-52 | -8.615850e-47 |
| Msa0354620 | Msa0448340 | 0.895908 | 6.124269e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448340 | MtrunA17_Chr3g0090471 | 68.094 | 467 | 45 | 2 | 1 | 363 | 1 | 467 | 0.0 | 550 |
| Msa0448340 | MtrunA17_Chr3g0090451 | 72.539 | 386 | 82 | 2 | 1 | 362 | 1 | 386 | 1.91e-178 | 508 |
| Msa0448340 | MtrunA17_Chr3g0090451 | 74.183 | 306 | 78 | 1 | 57 | 361 | 262 | 567 | 3.29e-147 | 428 |
| Msa0448340 | MtrunA17_Chr3g0090451 | 72.313 | 307 | 84 | 1 | 57 | 362 | 210 | 516 | 3.12e-144 | 421 |
| Msa0448340 | MtrunA17_Chr3g0090451 | 69.508 | 305 | 93 | 0 | 54 | 358 | 286 | 590 | 4.83e-139 | 407 |
| Msa0448340 | MtrunA17_Chr3g0144461 | 72.527 | 364 | 89 | 4 | 1 | 362 | 1 | 355 | 8.25e-168 | 475 |
| Msa0448340 | MtrunA17_Chr3g0144471 | 58.523 | 352 | 129 | 4 | 16 | 360 | 16 | 357 | 1.95e-124 | 362 |
| Msa0448340 | MtrunA17_Chr3g0144471 | 49.289 | 211 | 97 | 4 | 162 | 362 | 29 | 239 | 4.45e-49 | 169 |
| Msa0448340 | MtrunA17_Chr3g0138221 | 48.343 | 362 | 171 | 1 | 17 | 362 | 17 | 378 | 1.10e-109 | 328 |
| Msa0448340 | MtrunA17_Chr3g0138221 | 46.512 | 301 | 161 | 0 | 62 | 362 | 156 | 456 | 7.70e-87 | 270 |
| Msa0448340 | MtrunA17_Chr3g0138221 | 45.485 | 299 | 159 | 1 | 62 | 360 | 182 | 476 | 5.57e-81 | 255 |
| Msa0448340 | MtrunA17_Chr4g0034831 | 34.646 | 381 | 194 | 17 | 19 | 360 | 20 | 384 | 6.56e-49 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCCCAACATTTCGGCTTA+TGG | 0.203861 | 3_3:-27964961 | Msa0448340:CDS |
| TTGCCATAAGCTGAAATATT+TGG | 0.225249 | 3_3:+27964646 | None:intergenic |
| TTCTCCATAAGCTGAAATAT+TGG | 0.263465 | 3_3:+27965113 | None:intergenic |
| CGACCCAACATTTCAGCTTA+TGG | 0.265141 | 3_3:-27965273 | Msa0448340:CDS |
| AGACCCAATATTTCAGCTTA+TGG | 0.267378 | 3_3:-27965117 | Msa0448340:CDS |
| CGGCCTTGGTTCAAAATCTT+TGG | 0.278983 | 3_3:+27964588 | None:intergenic |
| AGACCAAATATTTCAGCTTA+TGG | 0.280649 | 3_3:-27964649 | Msa0448340:CDS |
| AGACCAAACATTTCAGCTTA+TGG | 0.288132 | 3_3:-27964883 | Msa0448340:CDS |
| AGACCCAACATTTCAGCTTA+TGG | 0.288132 | 3_3:-27965351 | Msa0448340:CDS |
| TCTCCATATGCTGAAATATT+CGG | 0.293638 | 3_3:+27964568 | None:intergenic |
| GCACTAACACCAAGGAAAAT+AGG | 0.310048 | 3_3:-27965398 | Msa0448340:CDS |
| ATAAGTGATGAACTAGTTAT+AGG | 0.313443 | 3_3:-27967469 | Msa0448340:five_prime_UTR |
| AGACCCAACATTTCAATATA+TGG | 0.322761 | 3_3:-27964805 | Msa0448340:CDS |
| TCTTGGTTCAAAATCTTTGA+TGG | 0.333210 | 3_3:+27964825 | None:intergenic |
| TCTCCATAAGCTGAAATATT+GGG | 0.337654 | 3_3:+27965114 | None:intergenic |
| TGAACCACGGCCCAACATTT+CGG | 0.350138 | 3_3:-27964968 | Msa0448340:CDS |
| TCTCCGTAAGCTGAAATATT+AGG | 0.367030 | 3_3:+27965192 | None:intergenic |
| GAAATGATCTGCGAGAATAT+TGG | 0.381517 | 3_3:-27965566 | Msa0448340:CDS |
| TATGCTGAAATATTGGATCT+TGG | 0.387955 | 3_3:+27965432 | None:intergenic |
| CTAAACTCATATAGACATTC+AGG | 0.389028 | 3_3:-27967431 | Msa0448340:five_prime_UTR |
| AGGAGTCCTTGAATTTCTTC+CGG | 0.392433 | 3_3:+27965516 | None:intergenic |
| AGACAATGACATTGAAGTTA+AGG | 0.407426 | 3_3:-27965328 | Msa0448340:CDS |
| TCTTGGTTCAAAATCCTTAG+TGG | 0.409004 | 3_3:+27964903 | None:intergenic |
| TATATTGAAATGTTGGGTCT+TGG | 0.410700 | 3_3:+27964808 | None:intergenic |
| TCTCCATATATTGAAATGTT+GGG | 0.412178 | 3_3:+27964802 | None:intergenic |
| TAAGCTGAAATATTTGGTCT+TGG | 0.412506 | 3_3:+27964652 | None:intergenic |
| AGGCCGAATATTTCAGCATA+TGG | 0.414557 | 3_3:-27964571 | Msa0448340:CDS |
| AGACAATGTCATAGATGTTA+AGG | 0.416032 | 3_3:-27965250 | Msa0448340:CDS |
| TAAGTTGAAATGTTGGGTCT+TGG | 0.419876 | 3_3:+27964730 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+TGG | 0.419967 | 3_3:+27964880 | None:intergenic |
| TAAGCTGAAATGTTTGGTCT+TGG | 0.428249 | 3_3:+27964886 | None:intergenic |
| TTCTCCATATATTGAAATGT+TGG | 0.437728 | 3_3:+27964801 | None:intergenic |
| CCTCACTAAACGCCTTCTCT+TGG | 0.445647 | 3_3:+27965463 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.452926 | 3_3:+27965042 | None:intergenic |
| TAAGCTGAAATATTGGGTCT+TGG | 0.456037 | 3_3:+27965120 | None:intergenic |
| TAAGCTGAAATATTAGGTCT+TGG | 0.457286 | 3_3:+27965198 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.464437 | 3_3:+27965354 | None:intergenic |
| CTCACTAAACGCCTTCTCTT+GGG | 0.465546 | 3_3:+27965464 | None:intergenic |
| GGAAAAGAGCGGAGCCACTA+AGG | 0.466210 | 3_3:-27964917 | Msa0448340:CDS |
| TCGTGGTTCAAAATCTTTAA+CGG | 0.469737 | 3_3:+27965293 | None:intergenic |
| CTTGGTTCAAAATCTTCGAC+TGG | 0.470140 | 3_3:+27964748 | None:intergenic |
| AGACCTAATATTTCAGCTTA+CGG | 0.471619 | 3_3:-27965195 | Msa0448340:CDS |
| TATGCTGAAATATTCGGCCT+TGG | 0.481023 | 3_3:+27964574 | None:intergenic |
| TCTTGGTTCGAAAACATTAG+TGG | 0.482644 | 3_3:+27965059 | None:intergenic |
| AGACCCAACATTTCAGCTTA+CGG | 0.484733 | 3_3:-27965039 | Msa0448340:CDS |
| AGACCCAACATTTCAACTTA+CGG | 0.485543 | 3_3:-27964727 | Msa0448340:CDS |
| TGACATTGACACCAAGGAAA+AGG | 0.493430 | 3_3:-27964620 | Msa0448340:CDS |
| GTCTCCGTAAGTTGAAATGT+TGG | 0.493577 | 3_3:+27964723 | None:intergenic |
| AATAAAGTTTGTAGCAATTG+TGG | 0.494400 | 3_3:-27965595 | Msa0448340:intron |
| TCTCCGTAAGTTGAAATGTT+GGG | 0.496654 | 3_3:+27964724 | None:intergenic |
| CATTGATGTTGATGAAAAGA+AGG | 0.499460 | 3_3:-27964851 | Msa0448340:CDS |
| TCTCCATAAGCTGAAATGTT+GGG | 0.499953 | 3_3:+27965348 | None:intergenic |
| TCTCCATAAGCCGAAATGTT+GGG | 0.501285 | 3_3:+27964958 | None:intergenic |
| CTCTCCGTAAGCTGAAATGT+TGG | 0.503472 | 3_3:+27965035 | None:intergenic |
| CATCGATGTTAATGAAAAGA+AGG | 0.503693 | 3_3:-27965007 | Msa0448340:CDS |
| TCTCCGTAAGCTGAAATGTT+GGG | 0.513710 | 3_3:+27965036 | None:intergenic |
| TGTCTATATGAGTTTAGTGT+TGG | 0.522018 | 3_3:+27967437 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.525189 | 3_3:+27965270 | None:intergenic |
| CATGAAAGAGCAAGACATAC+CGG | 0.535405 | 3_3:-27965535 | Msa0448340:CDS |
| GTCTCCATAAGCTGAAATGT+TGG | 0.536347 | 3_3:+27965269 | None:intergenic |
| GTCTCCATAAGCTGAAATGT+TGG | 0.536347 | 3_3:+27965347 | None:intergenic |
| ATTGAAGTTAAGGAAAAGAA+AGG | 0.540680 | 3_3:-27965318 | Msa0448340:CDS |
| ATTTCAGCATACGAAAATGA+TGG | 0.543256 | 3_3:-27965420 | Msa0448340:CDS |
| ATCTCCATAAGCCGAAATGT+TGG | 0.558155 | 3_3:+27964957 | None:intergenic |
| GACATACCGGAAGAAATTCA+AGG | 0.576602 | 3_3:-27965522 | Msa0448340:CDS |
| TAATCTCAATACCCAAGAGA+AGG | 0.591469 | 3_3:-27965475 | Msa0448340:CDS |
| TAAGCTGAAATGTTGGGTCG+TGG | 0.596199 | 3_3:+27965276 | None:intergenic |
| AGATGATGCCATTGATGCTA+AGG | 0.596256 | 3_3:-27964938 | Msa0448340:CDS |
| TAAGCCGAAATGTTGGGCCG+TGG | 0.596388 | 3_3:+27964964 | None:intergenic |
| CTTACCAAGAAAAGCAAGAG+AGG | 0.596916 | 3_3:+27967365 | None:intergenic |
| GAAAATAGGAAAGATGTCAA+AGG | 0.620259 | 3_3:-27965384 | Msa0448340:CDS |
| ATTGATGTTGATGAAAAGAA+GGG | 0.631130 | 3_3:-27964850 | Msa0448340:CDS |
| CCAAGAGAAGGCGTTTAGTG+AGG | 0.645806 | 3_3:-27965463 | Msa0448340:CDS |
| CAACAATGACATTGACACCA+AGG | 0.659301 | 3_3:-27964626 | Msa0448340:CDS |
| TGAAAAGAAGGCAGCCACTG+AGG | 0.664629 | 3_3:-27964995 | Msa0448340:CDS |
| CCGTGGTTCAAAATCCTCAG+TGG | 0.686559 | 3_3:+27964981 | None:intergenic |
| ATTGATGCTAAGGAAAAGAG+CGG | 0.694475 | 3_3:-27964928 | Msa0448340:CDS |
| AAATGATGGCACTAACACCA+AGG | 0.696723 | 3_3:-27965406 | Msa0448340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAGTAATATTTAAATCT+GGG | + | chr3_3:27966005-27966024 | None:intergenic | 10.0% |
| !! | ATTTAAGTAATATTTAAATC+TGG | + | chr3_3:27966006-27966025 | None:intergenic | 10.0% |
| !!! | TTTATATATTATAGAAGTAT+AGG | - | chr3_3:27966135-27966154 | Msa0448340:intron | 10.0% |
| !!! | TCTTAGTTTTTTTTTTTTAG+TGG | - | chr3_3:27964731-27964750 | Msa0448340:CDS | 15.0% |
| !! | TTAAGTAATATTTAAATCTG+GGG | + | chr3_3:27966004-27966023 | None:intergenic | 15.0% |
| !! | ATAAATTCGAAAAATTAAAG+AGG | + | chr3_3:27966120-27966139 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACAGAACA+AGG | + | chr3_3:27966279-27966298 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAGTGGTTTCT+TGG | - | chr3_3:27964739-27964758 | Msa0448340:CDS | 20.0% |
| !! | GACAATTAAAAAGTAACATA+TGG | + | chr3_3:27964844-27964863 | None:intergenic | 20.0% |
| !!! | TAGACATAGTATTGATTAAT+GGG | + | chr3_3:27965285-27965304 | None:intergenic | 20.0% |
| !!! | ATAGACATAGTATTGATTAA+TGG | + | chr3_3:27965286-27965305 | None:intergenic | 20.0% |
| !!! | TAGACATAGTATTGATTAAT+GGG | + | chr3_3:27965285-27965304 | None:intergenic | 20.0% |
| !!! | ATAGACATAGTATTGATTAA+TGG | + | chr3_3:27965286-27965305 | None:intergenic | 20.0% |
| !! | GAATTAATCAATGACTAATA+AGG | - | chr3_3:27965463-27965482 | Msa0448340:CDS | 20.0% |
| !! | AATGACTAATAAGGTTAATT+TGG | - | chr3_3:27965472-27965491 | Msa0448340:CDS | 20.0% |
| !! | AAATGAAAAGTAAAAACGAA+AGG | - | chr3_3:27966068-27966087 | Msa0448340:intron | 20.0% |
| !! | AATGAAAAGTAAAAACGAAA+GGG | - | chr3_3:27966069-27966088 | Msa0448340:intron | 20.0% |
| !! | TTAAAGAGGATTCATTAATT+TGG | + | chr3_3:27966106-27966125 | None:intergenic | 20.0% |
| !!! | AGAGATATCATAATCTTTTT+GGG | - | chr3_3:27966342-27966361 | Msa0448340:intron | 20.0% |
| ! | ATAAGTGATGAACTAGTTAT+AGG | - | chr3_3:27964589-27964608 | Msa0448340:CDS | 25.0% |
| ! | AGTATATATTAGAGGTTAGA+GGG | + | chr3_3:27964821-27964840 | None:intergenic | 25.0% |
| ! | ACATATGGAGTATATATTAG+AGG | + | chr3_3:27964829-27964848 | None:intergenic | 25.0% |
| ! | GACAACTATAAAGTAACAAA+TGG | - | chr3_3:27965087-27965106 | Msa0448340:CDS | 25.0% |
| ! | TACAAAGCTGACAATTATTA+CGG | + | chr3_3:27965147-27965166 | None:intergenic | 25.0% |
| !! | TTGAAAGTATGATTTAGTGA+AGG | + | chr3_3:27965970-27965989 | None:intergenic | 25.0% |
| ! | ACTAAATCATACTTTCAACT+TGG | - | chr3_3:27965972-27965991 | Msa0448340:intron | 25.0% |
| ! | ATGGAATATGATAAAGAGTT+GGG | + | chr3_3:27966249-27966268 | None:intergenic | 25.0% |
| ! | TATGGAATATGATAAAGAGT+TGG | + | chr3_3:27966250-27966269 | None:intergenic | 25.0% |
| !! | CAGAGATATCATAATCTTTT+TGG | - | chr3_3:27966341-27966360 | Msa0448340:intron | 25.0% |
| !! | GAGATATCATAATCTTTTTG+GGG | - | chr3_3:27966343-27966362 | Msa0448340:intron | 25.0% |
| !! | AGATATCATAATCTTTTTGG+GGG | - | chr3_3:27966344-27966363 | Msa0448340:intron | 25.0% |
| ! | TAAGCCAAAAGAAAAAACAA+TGG | + | chr3_3:27966428-27966447 | None:intergenic | 25.0% |
| ! | AATAAAGTTTGTAGCAATTG+TGG | - | chr3_3:27966463-27966482 | Msa0448340:intron | 25.0% |
| !! | ATTTTCGTATGCTGAAATAT+TGG | + | chr3_3:27966636-27966655 | None:intergenic | 25.0% |
| ! | ATTGAAGTTAAGGAAAAGAA+AGG | - | chr3_3:27966740-27966759 | Msa0448340:intron | 25.0% |
| ! | GTTGATGTTAAGAAAAAGAA+GGG | - | chr3_3:27966896-27966915 | Msa0448340:intron | 25.0% |
| !! | ATTGATGTTGATGAAAAGAA+GGG | - | chr3_3:27967208-27967227 | Msa0448340:intron | 25.0% |
| ! | TCTCCATATATTGAAATGTT+GGG | + | chr3_3:27967259-27967278 | None:intergenic | 25.0% |
| ! | TTCTCCATATATTGAAATGT+TGG | + | chr3_3:27967260-27967279 | None:intergenic | 25.0% |
| TGTCTATATGAGTTTAGTGT+TGG | + | chr3_3:27964624-27964643 | None:intergenic | 30.0% | |
| CTAAACTCATATAGACATTC+AGG | - | chr3_3:27964627-27964646 | Msa0448340:CDS | 30.0% | |
| ! | TTGGTAAGTTACACTTTTCT+TGG | - | chr3_3:27964708-27964727 | Msa0448340:CDS | 30.0% |
| GAGTATATATTAGAGGTTAG+AGG | + | chr3_3:27964822-27964841 | None:intergenic | 30.0% | |
| ATTTGATGCAATTGAAACAC+AGG | - | chr3_3:27964961-27964980 | Msa0448340:CDS | 30.0% | |
| ACAAAGCTGACAATTATTAC+GGG | + | chr3_3:27965146-27965165 | None:intergenic | 30.0% | |
| ACCCTTTGCATCTAATAAAA+GGG | - | chr3_3:27965747-27965766 | Msa0448340:intron | 30.0% | |
| ! | ACCCTTTTATTAGATGCAAA+GGG | + | chr3_3:27965751-27965770 | None:intergenic | 30.0% |
| !! | ATAAAAGGGTGCTTACATAT+AGG | - | chr3_3:27965761-27965780 | Msa0448340:intron | 30.0% |
| !! | TAAAAGGGTGCTTACATATA+GGG | - | chr3_3:27965762-27965781 | Msa0448340:intron | 30.0% |
| ! | GAGGATTCATTAATTTGGAT+TGG | + | chr3_3:27966101-27966120 | None:intergenic | 30.0% |
| AACAGAACAAGGAAAGAATA+TGG | + | chr3_3:27966268-27966287 | None:intergenic | 30.0% | |
| !!! | TCGACCATTGTTTTTTCTTT+TGG | - | chr3_3:27966421-27966440 | Msa0448340:intron | 30.0% |
| !!! | TACTTTTAGTGTTGACGTTA+AGG | + | chr3_3:27966565-27966584 | None:intergenic | 30.0% |
| TATGCTGAAATATTGGATCT+TGG | + | chr3_3:27966629-27966648 | None:intergenic | 30.0% | |
| ATTTCAGCATACGAAAATGA+TGG | - | chr3_3:27966638-27966657 | Msa0448340:intron | 30.0% | |
| GAAAATAGGAAAGATGTCAA+AGG | - | chr3_3:27966674-27966693 | Msa0448340:intron | 30.0% | |
| AGACAATGACATTGAAGTTA+AGG | - | chr3_3:27966730-27966749 | Msa0448340:intron | 30.0% | |
| TCGTGGTTCAAAATCTTTAA+CGG | + | chr3_3:27966768-27966787 | None:intergenic | 30.0% | |
| AGACAATGTCATAGATGTTA+AGG | - | chr3_3:27966808-27966827 | Msa0448340:intron | 30.0% | |
| TAAGCTGAAATATTAGGTCT+TGG | + | chr3_3:27966863-27966882 | None:intergenic | 30.0% | |
| AGACCTAATATTTCAGCTTA+CGG | - | chr3_3:27966863-27966882 | Msa0448340:intron | 30.0% | |
| CGTTGATGTTAAGAAAAAGA+AGG | - | chr3_3:27966895-27966914 | Msa0448340:intron | 30.0% | |
| TCTCCATAAGCTGAAATATT+GGG | + | chr3_3:27966947-27966966 | None:intergenic | 30.0% | |
| TTCTCCATAAGCTGAAATAT+TGG | + | chr3_3:27966948-27966967 | None:intergenic | 30.0% | |
| CATCGATGTTAATGAAAAGA+AGG | - | chr3_3:27967051-27967070 | Msa0448340:intron | 30.0% | |
| ! | CATTGATGTTGATGAAAAGA+AGG | - | chr3_3:27967207-27967226 | Msa0448340:intron | 30.0% |
| TCTTGGTTCAAAATCTTTGA+TGG | + | chr3_3:27967236-27967255 | None:intergenic | 30.0% | |
| TATATTGAAATGTTGGGTCT+TGG | + | chr3_3:27967253-27967272 | None:intergenic | 30.0% | |
| AGACCCAACATTTCAATATA+TGG | - | chr3_3:27967253-27967272 | Msa0448340:intron | 30.0% | |
| TAAGCTGAAATATTTGGTCT+TGG | + | chr3_3:27967409-27967428 | None:intergenic | 30.0% | |
| AGACCAAATATTTCAGCTTA+TGG | - | chr3_3:27967409-27967428 | Msa0448340:exon | 30.0% | |
| TTGCCATAAGCTGAAATATT+TGG | + | chr3_3:27967415-27967434 | None:intergenic | 30.0% | |
| TCTCCATATGCTGAAATATT+CGG | + | chr3_3:27967493-27967512 | None:intergenic | 30.0% | |
| TGAAATGACCAATGAATCGT+TGG | + | chr3_3:27965615-27965634 | None:intergenic | 35.0% | |
| TAGAAAATTGCAAGTGTAGG+AGG | + | chr3_3:27965639-27965658 | None:intergenic | 35.0% | |
| GCATAGAAAATTGCAAGTGT+AGG | + | chr3_3:27965642-27965661 | None:intergenic | 35.0% | |
| AACAACGATAATGCAAGTGT+AGG | + | chr3_3:27965698-27965717 | None:intergenic | 35.0% | |
| CACCCTTTGCATCTAATAAA+AGG | - | chr3_3:27965746-27965765 | Msa0448340:intron | 35.0% | |
| ! | CACCCTTTTATTAGATGCAA+AGG | + | chr3_3:27965752-27965771 | None:intergenic | 35.0% |
| GAAATGATCTGCGAGAATAT+TGG | - | chr3_3:27966492-27966511 | Msa0448340:intron | 35.0% | |
| TAATCTCAATACCCAAGAGA+AGG | - | chr3_3:27966583-27966602 | Msa0448340:intron | 35.0% | |
| ! | GACATCTTTCCTATTTTCCT+TGG | + | chr3_3:27966672-27966691 | None:intergenic | 35.0% |
| TCTCCATAAGCTGAAATGTT+GGG | + | chr3_3:27966713-27966732 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAATGTT+GGG | + | chr3_3:27966713-27966732 | None:intergenic | 35.0% | |
| TCTCCGTAAGCTGAAATATT+AGG | + | chr3_3:27966869-27966888 | None:intergenic | 35.0% | |
| TAAGCTGAAATATTGGGTCT+TGG | + | chr3_3:27966941-27966960 | None:intergenic | 35.0% | |
| AGACCCAATATTTCAGCTTA+TGG | - | chr3_3:27966941-27966960 | Msa0448340:intron | 35.0% | |
| ! | TCTTGGTTCGAAAACATTAG+TGG | + | chr3_3:27967002-27967021 | None:intergenic | 35.0% |
| ATTGATGCTAAGGAAAAGAG+CGG | - | chr3_3:27967130-27967149 | Msa0448340:intron | 35.0% | |
| TCTTGGTTCAAAATCCTTAG+TGG | + | chr3_3:27967158-27967177 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTTGGTCT+TGG | + | chr3_3:27967175-27967194 | None:intergenic | 35.0% | |
| AGACCAAACATTTCAGCTTA+TGG | - | chr3_3:27967175-27967194 | Msa0448340:intron | 35.0% | |
| TCTCCATAAGCTGAAATGTT+TGG | + | chr3_3:27966713-27966732 | None:intergenic | 35.0% | |
| ! | TAAGTTGAAATGTTGGGTCT+TGG | + | chr3_3:27967331-27967350 | None:intergenic | 35.0% |
| AGACCCAACATTTCAACTTA+CGG | - | chr3_3:27967331-27967350 | Msa0448340:intron | 35.0% | |
| ! | TCTCCGTAAGTTGAAATGTT+GGG | + | chr3_3:27967337-27967356 | None:intergenic | 35.0% |
| !! | ATTGCCTCTCTTGCTTTTCT+TGG | - | chr3_3:27964689-27964708 | Msa0448340:CDS | 40.0% |
| CTTACCAAGAAAAGCAAGAG+AGG | + | chr3_3:27964696-27964715 | None:intergenic | 40.0% | |
| TGATGCAATTGAAACACAGG+TGG | - | chr3_3:27964964-27964983 | Msa0448340:CDS | 40.0% | |
| TGAAACGACCAATGAATCGT+TGG | + | chr3_3:27965671-27965690 | None:intergenic | 40.0% | |
| AACGATAATGCAAGTGTAGG+AGG | + | chr3_3:27965695-27965714 | None:intergenic | 40.0% | |
| !! | GCAAAGGGTGCTTACATATA+GGG | + | chr3_3:27965736-27965755 | None:intergenic | 40.0% |
| !! | TGCAAAGGGTGCTTACATAT+AGG | + | chr3_3:27965737-27965756 | None:intergenic | 40.0% |
| TGCTTACATATAGGGAAGGA+GGG | - | chr3_3:27965770-27965789 | Msa0448340:intron | 40.0% | |
| CATGAAAGAGCAAGACATAC+CGG | - | chr3_3:27966523-27966542 | Msa0448340:intron | 40.0% | |
| GACATACCGGAAGAAATTCA+AGG | - | chr3_3:27966536-27966555 | Msa0448340:intron | 40.0% | |
| AGGAGTCCTTGAATTTCTTC+CGG | + | chr3_3:27966545-27966564 | None:intergenic | 40.0% | |
| AAATGATGGCACTAACACCA+AGG | - | chr3_3:27966652-27966671 | Msa0448340:intron | 40.0% | |
| GCACTAACACCAAGGAAAAT+AGG | - | chr3_3:27966660-27966679 | Msa0448340:intron | 40.0% | |
| TAAGCTGAAATGTTGGGTCT+TGG | + | chr3_3:27966707-27966726 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+TGG | - | chr3_3:27966707-27966726 | Msa0448340:intron | 40.0% | |
| GTCTCCATAAGCTGAAATGT+TGG | + | chr3_3:27966714-27966733 | None:intergenic | 40.0% | |
| GTCTCCATAAGCTGAAATGT+TGG | + | chr3_3:27966714-27966733 | None:intergenic | 40.0% | |
| TAAGCTGAAATGTTGGGTCT+TGG | + | chr3_3:27966707-27966726 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+CGG | - | chr3_3:27966707-27966726 | Msa0448340:intron | 40.0% | |
| TCTCCGTAAGCTGAAATGTT+GGG | + | chr3_3:27967025-27967044 | None:intergenic | 40.0% | |
| TCTCCATAAGCCGAAATGTT+GGG | + | chr3_3:27967103-27967122 | None:intergenic | 40.0% | |
| ATCTCCATAAGCCGAAATGT+TGG | + | chr3_3:27967104-27967123 | None:intergenic | 40.0% | |
| AGATGATGCCATTGATGCTA+AGG | - | chr3_3:27967120-27967139 | Msa0448340:intron | 40.0% | |
| ! | GCTCTTTTCCTTAGCATCAA+TGG | + | chr3_3:27967131-27967150 | None:intergenic | 40.0% |
| CTTGGTTCAAAATCTTCGAC+TGG | + | chr3_3:27967313-27967332 | None:intergenic | 40.0% | |
| ! | GTCTCCGTAAGTTGAAATGT+TGG | + | chr3_3:27967338-27967357 | None:intergenic | 40.0% |
| CAACAATGACATTGACACCA+AGG | - | chr3_3:27967432-27967451 | Msa0448340:five_prime_UTR | 40.0% | |
| TGACATTGACACCAAGGAAA+AGG | - | chr3_3:27967438-27967457 | Msa0448340:five_prime_UTR | 40.0% | |
| ! | CTGCCAAAGATTTTGAACCA+AGG | - | chr3_3:27967467-27967486 | Msa0448340:five_prime_UTR | 40.0% |
| TATGCTGAAATATTCGGCCT+TGG | + | chr3_3:27967487-27967506 | None:intergenic | 40.0% | |
| AGGCCGAATATTTCAGCATA+TGG | - | chr3_3:27967487-27967506 | Msa0448340:five_prime_UTR | 40.0% | |
| TGCTTACATATAGGGACGGA+GGG | + | chr3_3:27965728-27965747 | None:intergenic | 45.0% | |
| ! | AGGGTGCTTACATATAGGGA+CGG | + | chr3_3:27965766-27965785 | None:intergenic | 45.0% |
| ! | AGGGTGCTTACATATAGGGA+AGG | - | chr3_3:27965766-27965785 | Msa0448340:intron | 45.0% |
| GTGCTTACATATAGGGAAGG+AGG | - | chr3_3:27965769-27965788 | Msa0448340:intron | 45.0% | |
| !! | AAGAAAGATGAGAGCGCCTT+GGG | + | chr3_3:27965858-27965877 | None:intergenic | 45.0% |
| !! | TAAGAAAGATGAGAGCGCCT+TGG | + | chr3_3:27965859-27965878 | None:intergenic | 45.0% |
| CTCACTAAACGCCTTCTCTT+GGG | + | chr3_3:27966597-27966616 | None:intergenic | 45.0% | |
| TAAGCTGAAATGTTGGGTCG+TGG | + | chr3_3:27966785-27966804 | None:intergenic | 45.0% | |
| CGACCCAACATTTCAGCTTA+TGG | - | chr3_3:27966785-27966804 | Msa0448340:intron | 45.0% | |
| CTCTCCGTAAGCTGAAATGT+TGG | + | chr3_3:27967026-27967045 | None:intergenic | 45.0% | |
| ! | CCACTGAGGATTTTGAACCA+CGG | - | chr3_3:27967077-27967096 | Msa0448340:intron | 45.0% |
| CGGCCTTGGTTCAAAATCTT+TGG | + | chr3_3:27967473-27967492 | None:intergenic | 45.0% | |
| !!! | ATTTTATTTTTTATAAAAGA+TGG | + | chr3_3:27964791-27964810 | None:intergenic | 5.0% |
| !! | TAATAATAAAAAAAAATTCA+AGG | + | chr3_3:27965885-27965904 | None:intergenic | 5.0% |
| GCGCACTACCAACGATTCAT+TGG | - | chr3_3:27965604-27965623 | Msa0448340:intron | 50.0% | |
| GCGCACTACCAACGATTCAT+TGG | - | chr3_3:27965604-27965623 | Msa0448340:intron | 50.0% | |
| GTGCTTACATATAGGGACGG+AGG | + | chr3_3:27965729-27965748 | None:intergenic | 50.0% | |
| TAATTCGCACAGATGCCCCA+AGG | - | chr3_3:27965839-27965858 | Msa0448340:intron | 50.0% | |
| !! | AGAAAGATGAGAGCGCCTTG+GGG | + | chr3_3:27965857-27965876 | None:intergenic | 50.0% |
| CCTCACTAAACGCCTTCTCT+TGG | + | chr3_3:27966598-27966617 | None:intergenic | 50.0% | |
| !! | CCAAGAGAAGGCGTTTAGTG+AGG | - | chr3_3:27966595-27966614 | Msa0448340:intron | 50.0% |
| TGAAAAGAAGGCAGCCACTG+AGG | - | chr3_3:27967063-27967082 | Msa0448340:intron | 50.0% | |
| CCGTGGTTCAAAATCCTCAG+TGG | + | chr3_3:27967080-27967099 | None:intergenic | 50.0% | |
| TGAACCACGGCCCAACATTT+CGG | - | chr3_3:27967090-27967109 | Msa0448340:intron | 50.0% | |
| ! | GGCAGCTTTCTCCTTTTCCT+TGG | + | chr3_3:27967452-27967471 | None:intergenic | 50.0% |
| TAAGCCGAAATGTTGGGCCG+TGG | + | chr3_3:27967097-27967116 | None:intergenic | 55.0% | |
| CGGCCCAACATTTCGGCTTA+TGG | - | chr3_3:27967097-27967116 | Msa0448340:intron | 55.0% | |
| GGAAAAGAGCGGAGCCACTA+AGG | - | chr3_3:27967141-27967160 | Msa0448340:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 27964564 | 27967516 | 27964564 | ID=Msa0448340;Name=Msa0448340 |
| chr3_3 | mRNA | 27964564 | 27967516 | 27964564 | ID=Msa0448340-mRNA-1;Parent=Msa0448340;Name=Msa0448340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105|1|0.5|1|0|0|2|0|363 |
| chr3_3 | exon | 27964564 | 27965610 | 27964564 | ID=Msa0448340-mRNA-1:exon:5432;Parent=Msa0448340-mRNA-1 |
| chr3_3 | exon | 27967370 | 27967516 | 27967370 | ID=Msa0448340-mRNA-1:exon:5431;Parent=Msa0448340-mRNA-1 |
| chr3_3 | five_prime_UTR | 27967412 | 27967516 | 27967412 | ID=Msa0448340-mRNA-1:five_prime_utr;Parent=Msa0448340-mRNA-1 |
| chr3_3 | CDS | 27967370 | 27967411 | 27967370 | ID=Msa0448340-mRNA-1:cds;Parent=Msa0448340-mRNA-1 |
| chr3_3 | CDS | 27964564 | 27965610 | 27964564 | ID=Msa0448340-mRNA-1:cds;Parent=Msa0448340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
