AlfalfaGEDB | Msa0448340

M. sativa cultivar zhongmu-4 / Msa0448340

KEGG: -
GO: -
PFAM: PF10950.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448340	XP_003599531.1	62.848	323	68	1	65	335	169	491	6.42e-122	371
Msa0448340	XP_003599531.1	67.982	228	73	0	57	284	265	492	2.40e-93	298
Msa0448340	XP_003599531.1	69.462	465	38	2	1	361	1	465	0.0	557

Showing 1 to 3 of 3 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448340	sp\|P17772\|OSS2_PEA	51.053	190	66	4	15	204	17	179	1.41e-52	175
Msa0448340	sp\|P17772\|OSS2_PEA	44.118	170	88	2	139	308	17	179	1.24e-36	134
Msa0448340	sp\|P17772\|OSS2_PEA	54.918	122	51	1	213	334	62	179	3.02e-36	132
Msa0448340	sp\|P17772\|OSS2_PEA	53.226	124	54	1	237	360	60	179	2.77e-35	130
Msa0448340	sp\|P17772\|OSS2_PEA	52.419	124	55	1	133	256	60	179	3.36e-35	130
Msa0448340	sp\|P17772\|OSS2_PEA	52.577	97	46	0	265	361	62	158	1.56e-25	104

Showing 1 to 6 of 6 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448340	G7IZL7	62.848	323	68	1	65	335	169	491	3.06e-122	371
Msa0448340	G7IZL7	67.982	228	73	0	57	284	265	492	1.15e-93	298
Msa0448340	G7IZL7	69.462	465	38	2	1	361	1	465	0.0	557

Showing 1 to 3 of 3 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0448340	0.817360	3.434396e-52	-8.615850e-47
Msa0001960	Msa0448340	0.808076	3.700036e-50	-8.615850e-47
Msa0027820	Msa0448340	0.811394	7.155686e-51	-8.615850e-47
Msa0074600	Msa0448340	0.830908	2.253006e-55	-8.615850e-47
Msa0126040	Msa0448340	0.801085	1.063579e-48	-8.615850e-47
Msa0195100	Msa0448340	0.807950	3.934794e-50	-8.615850e-47
Msa0225100	Msa0448340	0.820642	6.157743e-53	-8.615850e-47
Msa0225680	Msa0448340	0.804383	2.217968e-49	-8.615850e-47
Msa0225860	Msa0448340	0.808328	3.268900e-50	-8.615850e-47
Msa0230320	Msa0448340	0.810216	1.287115e-50	-8.615850e-47

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448340	MtrunA17_Chr3g0090471	68.094	467	45	2	1	363	1	467	0.0	550
Msa0448340	MtrunA17_Chr3g0090451	72.539	386	82	2	1	362	1	386	1.91e-178	508
Msa0448340	MtrunA17_Chr3g0090451	74.183	306	78	1	57	361	262	567	3.29e-147	428
Msa0448340	MtrunA17_Chr3g0090451	72.313	307	84	1	57	362	210	516	3.12e-144	421
Msa0448340	MtrunA17_Chr3g0090451	69.508	305	93	0	54	358	286	590	4.83e-139	407
Msa0448340	MtrunA17_Chr3g0144461	72.527	364	89	4	1	362	1	355	8.25e-168	475
Msa0448340	MtrunA17_Chr3g0144471	58.523	352	129	4	16	360	16	357	1.95e-124	362
Msa0448340	MtrunA17_Chr3g0144471	49.289	211	97	4	162	362	29	239	4.45e-49	169
Msa0448340	MtrunA17_Chr3g0138221	48.343	362	171	1	17	362	17	378	1.10e-109	328
Msa0448340	MtrunA17_Chr3g0138221	46.512	301	161	0	62	362	156	456	7.70e-87	270

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 78 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGATGGCACTAACACCA+AGG	0.696723	3_3:-27965406	Msa0448340:CDS
AATAAAGTTTGTAGCAATTG+TGG	0.494400	3_3:-27965595	Msa0448340:intron
AGACAATGACATTGAAGTTA+AGG	0.407426	3_3:-27965328	Msa0448340:CDS
AGACAATGTCATAGATGTTA+AGG	0.416032	3_3:-27965250	Msa0448340:CDS
AGACCAAACATTTCAGCTTA+TGG	0.288132	3_3:-27964883	Msa0448340:CDS
AGACCAAATATTTCAGCTTA+TGG	0.280649	3_3:-27964649	Msa0448340:CDS
AGACCCAACATTTCAACTTA+CGG	0.485543	3_3:-27964727	Msa0448340:CDS
AGACCCAACATTTCAATATA+TGG	0.322761	3_3:-27964805	Msa0448340:CDS
AGACCCAACATTTCAGCTTA+CGG	0.484733	3_3:-27965039	Msa0448340:CDS
AGACCCAACATTTCAGCTTA+TGG	0.288132	3_3:-27965351	Msa0448340:CDS

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTCTATATGAGTTTAGTGT+TGG	+	chr3_3:27964624-27964643	None:intergenic	30.0%
CTAAACTCATATAGACATTC+AGG	-	chr3_3:27964627-27964646	Msa0448340:CDS	30.0%
GAGTATATATTAGAGGTTAG+AGG	+	chr3_3:27964822-27964841	None:intergenic	30.0%
ATTTGATGCAATTGAAACAC+AGG	-	chr3_3:27964961-27964980	Msa0448340:CDS	30.0%
ACAAAGCTGACAATTATTAC+GGG	+	chr3_3:27965146-27965165	None:intergenic	30.0%
ACCCTTTGCATCTAATAAAA+GGG	-	chr3_3:27965747-27965766	Msa0448340:intron	30.0%
AACAGAACAAGGAAAGAATA+TGG	+	chr3_3:27966268-27966287	None:intergenic	30.0%
TATGCTGAAATATTGGATCT+TGG	+	chr3_3:27966629-27966648	None:intergenic	30.0%
ATTTCAGCATACGAAAATGA+TGG	-	chr3_3:27966638-27966657	Msa0448340:intron	30.0%
GAAAATAGGAAAGATGTCAA+AGG	-	chr3_3:27966674-27966693	Msa0448340:intron	30.0%

Showing 1 to 10 of 155 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	27964564	27967516	27964564	ID=Msa0448340;Name=Msa0448340
chr3_3	mRNA	27964564	27967516	27964564	ID=Msa0448340-mRNA-1;Parent=Msa0448340;Name=Msa0448340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105\|1\|0.5\|1\|0\|0\|2\|0\|363
chr3_3	exon	27964564	27965610	27964564	ID=Msa0448340-mRNA-1:exon:5432;Parent=Msa0448340-mRNA-1
chr3_3	exon	27967370	27967516	27967370	ID=Msa0448340-mRNA-1:exon:5431;Parent=Msa0448340-mRNA-1
chr3_3	five_prime_UTR	27967412	27967516	27967412	ID=Msa0448340-mRNA-1:five_prime_utr;Parent=Msa0448340-mRNA-1
chr3_3	CDS	27967370	27967411	27967370	ID=Msa0448340-mRNA-1:cds;Parent=Msa0448340-mRNA-1
chr3_3	CDS	27964564	27965610	27964564	ID=Msa0448340-mRNA-1:cds;Parent=Msa0448340-mRNA-1

Gene Sequence

>Msa0448340

ATGAGAACTGCTCTTGCTTTATTGCCTCTCTTGCTTTTCTTGTTTGTAGCAATTGTGGAATCAAGAAATGATCTGCGAGAATATTGGAAACTAGTCATGAAAGAGCAAGACATACCGGAAGAAATTCAAGGACTCCTTAACGTCAACACTAAAAGTAATCTCAATACCCAAGAGAAGGCGTTTAGTGAGGATATTGAACCAAGATCCAATATTTCAGCATACGAAAATGATGGCACTAACACCAAGGAAAATAGGAAAGATGTCAAAGGTTTTGAACCAAGACCCAACATTTCAGCTTATGGAGACAATGACATTGAAGTTAAGGAAAAGAAAGGTGCCGTTAAAGATTTTGAACCACGACCCAACATTTCAGCTTATGGAGACAATGTCATAGATGTTAAGGAAAAGAAGAAAGTCGTCAAAGATTTCGAACCAAGACCTAATATTTCAGCTTACGGAGACAATGTCGTTGATGTTAAGAAAAAGAAGGGAGTCACTAAAGATTTTGAACCAAGACCCAATATTTCAGCTTATGGAGAAAATGACAATGATGTCAAAGAAAAGAAGCAAACCACTAATGTTTTCGAACCAAGACCCAACATTTCAGCTTACGGAGAGAATGACATCGATGTTAATGAAAAGAAGGCAGCCACTGAGGATTTTGAACCACGGCCCAACATTTCGGCTTATGGAGATGATGCCATTGATGCTAAGGAAAAGAGCGGAGCCACTAAGGATTTTGAACCAAGACCAAACATTTCAGCTTATGGAGACAATGACATTGATGTTGATGAAAAGAAGGGAGCCATCAAAGATTTTGAACCAAGACCCAACATTTCAATATATGGAGAAAATGTCATTAATGATGATGAAACAAAGAAACCAGTCGAAGATTTTGAACCAAGACCCAACATTTCAACTTACGGAGACAATGACATTGATGACAGAAAAAAGAATAATGTCATTTCAGATTTTGAACCAAGACCAAATATTTCAGCTTATGGCAACAATGACATTGACACCAAGGAAAAGGAGAAAGCTGCCAAAGATTTTGAACCAAGGCCGAATATTTCAGCATATGGAGAAAAA

Protein sequence

>Msa0448340

MRTALALLPLLLFLFVAIVESRNDLREYWKLVMKEQDIPEEIQGLLNVNTKSNLNTQEKAFSEDIEPRSNISAYENDGTNTKENRKDVKGFEPRPNISAYGDNDIEVKEKKGAVKDFEPRPNISAYGDNVIDVKEKKKVVKDFEPRPNISAYGDNVVDVKKKKGVTKDFEPRPNISAYGENDNDVKEKKQTTNVFEPRPNISAYGENDIDVNEKKAATEDFEPRPNISAYGDDAIDAKEKSGATKDFEPRPNISAYGDNDIDVDEKKGAIKDFEPRPNISIYGENVINDDETKKPVEDFEPRPNISTYGDNDIDDRKKNNVISDFEPRPNISAYGNNDIDTKEKEKAAKDFEPRPNISAYGEK