Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401520 | RHN66398.1 | 80.300 | 467 | 40 | 2 | 1 | 415 | 1 | 467 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401520 | sp|P17772|OSS2_PEA | 51.053 | 190 | 66 | 3 | 15 | 204 | 17 | 179 | 8.55e-54 | 180 |
| Msa0401520 | sp|P17772|OSS2_PEA | 57.258 | 124 | 49 | 1 | 237 | 360 | 60 | 179 | 9.02e-38 | 138 |
| Msa0401520 | sp|P17772|OSS2_PEA | 56.000 | 125 | 51 | 1 | 210 | 334 | 59 | 179 | 1.05e-36 | 135 |
| Msa0401520 | sp|P17772|OSS2_PEA | 53.175 | 126 | 55 | 1 | 157 | 282 | 58 | 179 | 2.23e-36 | 134 |
| Msa0401520 | sp|P17772|OSS2_PEA | 43.529 | 170 | 89 | 2 | 139 | 308 | 17 | 179 | 3.56e-35 | 131 |
| Msa0401520 | sp|P17772|OSS2_PEA | 53.226 | 124 | 54 | 1 | 263 | 386 | 60 | 179 | 1.22e-34 | 129 |
| Msa0401520 | sp|P17772|OSS2_PEA | 54.098 | 122 | 52 | 1 | 291 | 412 | 62 | 179 | 2.75e-33 | 126 |
| Msa0401520 | sp|P17772|OSS2_PEA | 55.000 | 100 | 45 | 0 | 315 | 414 | 60 | 159 | 1.24e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401520 | A0A396INT5 | 80.300 | 467 | 40 | 2 | 1 | 415 | 1 | 467 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0401520 | Msa0434290 | 0.800853 | 1.186160e-48 | -8.615850e-47 |
| Msa0401520 | Msa0448340 | 0.860614 | 1.826700e-63 | -8.615850e-47 |
| Msa0354620 | Msa0401520 | 0.868510 | 6.190378e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401520 | MtrunA17_Chr3g0090471 | 80.300 | 467 | 40 | 2 | 1 | 415 | 1 | 467 | 0.0 | 624 |
| Msa0401520 | MtrunA17_Chr3g0090451 | 72.831 | 438 | 95 | 2 | 1 | 414 | 1 | 438 | 0.0 | 582 |
| Msa0401520 | MtrunA17_Chr3g0090451 | 74.581 | 358 | 90 | 1 | 57 | 413 | 210 | 567 | 6.49e-176 | 504 |
| Msa0401520 | MtrunA17_Chr3g0090451 | 70.986 | 355 | 102 | 1 | 57 | 410 | 236 | 590 | 8.98e-166 | 478 |
| Msa0401520 | MtrunA17_Chr3g0090451 | 70.492 | 305 | 90 | 0 | 54 | 358 | 286 | 590 | 2.17e-139 | 410 |
| Msa0401520 | MtrunA17_Chr3g0144461 | 68.109 | 439 | 103 | 5 | 1 | 411 | 1 | 430 | 0.0 | 530 |
| Msa0401520 | MtrunA17_Chr3g0144461 | 62.406 | 266 | 91 | 2 | 149 | 414 | 46 | 302 | 2.82e-97 | 297 |
| Msa0401520 | MtrunA17_Chr3g0138221 | 50.000 | 398 | 163 | 1 | 17 | 414 | 17 | 378 | 6.75e-125 | 370 |
| Msa0401520 | MtrunA17_Chr3g0138221 | 47.293 | 351 | 181 | 1 | 62 | 412 | 130 | 476 | 6.68e-104 | 316 |
| Msa0401520 | MtrunA17_Chr3g0138221 | 51.118 | 313 | 152 | 1 | 104 | 415 | 41 | 353 | 5.96e-102 | 311 |
| Msa0401520 | MtrunA17_Chr3g0144471 | 57.790 | 353 | 132 | 4 | 15 | 360 | 15 | 357 | 1.63e-122 | 359 |
| Msa0401520 | MtrunA17_Chr3g0144471 | 49.749 | 398 | 143 | 4 | 16 | 412 | 16 | 357 | 1.60e-112 | 334 |
| Msa0401520 | MtrunA17_Chr3g0144471 | 58.015 | 262 | 109 | 1 | 154 | 414 | 82 | 343 | 6.98e-95 | 289 |
| Msa0401520 | MtrunA17_Chr4g0034831 | 35.156 | 384 | 214 | 18 | 19 | 386 | 20 | 384 | 2.21e-50 | 174 |
| Msa0401520 | MtrunA17_Chr4g0034831 | 36.058 | 208 | 125 | 7 | 207 | 412 | 77 | 278 | 1.33e-28 | 115 |
| Msa0401520 | MtrunA17_Chr4g0034831 | 34.225 | 187 | 108 | 6 | 233 | 413 | 77 | 254 | 4.60e-22 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACCTAATATTTCAGCTTA+TGG | 0.249218 | 3_2:+27784066 | Msa0401520:CDS |
| TTCTCCATAAGCTGAAATAT+TGG | 0.263465 | 3_2:-27783836 | None:intergenic |
| CGACCCAACATTTCAGCTTA+TGG | 0.265141 | 3_2:+27783676 | Msa0401520:CDS |
| CAAGTTAATCACCTATTTAT+AGG | 0.265317 | 3_2:-27780675 | None:intergenic |
| AGACCCAATATTTCAGCTTA+TGG | 0.267378 | 3_2:+27783832 | Msa0401520:CDS |
| CGGCCCAACATTTCAGCTTA+TGG | 0.267437 | 3_2:+27784222 | Msa0401520:CDS |
| TCTCCATAAGCTGAAATATT+AGG | 0.268255 | 3_2:-27784069 | None:intergenic |
| CGGCCTTGGTTCAAAATCTT+TGG | 0.278983 | 3_2:-27784517 | None:intergenic |
| AGACCCAACATTTCAGCTTA+TGG | 0.288132 | 3_2:+27783910 | Msa0401520:CDS |
| AGACCCAACATTTCAGCTTA+TGG | 0.288132 | 3_2:+27784144 | Msa0401520:CDS |
| AGACCAAACATTTCAGCTTA+TGG | 0.288132 | 3_2:+27784300 | Msa0401520:CDS |
| TCTCCATATGCTGAAATATT+CGG | 0.293638 | 3_2:-27784537 | None:intergenic |
| ATAGGTGATTAACTTGTTAT+AGG | 0.298852 | 3_2:+27780682 | Msa0401520:five_prime_UTR |
| GCACTAACACCAAGGAAAAT+AGG | 0.310048 | 3_2:+27783551 | Msa0401520:CDS |
| AGACCAAACATTTCAGCTTA+TGG | 0.326139 | 3_2:+27784456 | Msa0401520:CDS |
| TCTCCATAAGCTGAAATATT+GGG | 0.337654 | 3_2:-27783835 | None:intergenic |
| TTGAGTATCTACCTATAAAT+AGG | 0.347927 | 3_2:+27780664 | Msa0401520:five_prime_UTR |
| TCTCCGTAAGCTGAAATATT+AGG | 0.367030 | 3_2:-27783757 | None:intergenic |
| AGACCCAACAGTTCAGCTTA+TGG | 0.371294 | 3_2:+27783598 | Msa0401520:CDS |
| TGAACCACGACCCAACATTT+CGG | 0.373762 | 3_2:+27783981 | Msa0401520:CDS |
| TCTCCATAAGCTGAAATGTT+TGG | 0.381277 | 3_2:-27784303 | None:intergenic |
| GAAATGATCTGCGAGAATAT+TGG | 0.381517 | 3_2:+27783383 | Msa0401520:CDS |
| TATGCTGAAATATTGGATCT+TGG | 0.387955 | 3_2:-27783517 | None:intergenic |
| AGGAGTCCTTGAATTTCTTC+CGG | 0.392433 | 3_2:-27783433 | None:intergenic |
| TAAGCTGAACTGTTGGGTCT+TGG | 0.393430 | 3_2:-27783595 | None:intergenic |
| TCTTGGTTCGAAATCTTTGA+TGG | 0.395429 | 3_2:-27784046 | None:intergenic |
| AGACAATGACATTGAAGTTA+AGG | 0.407426 | 3_2:+27783621 | Msa0401520:CDS |
| TCTTGGTTCAAAATCCTTAG+TGG | 0.409004 | 3_2:-27784280 | None:intergenic |
| AGGCCGAATATTTCAGCATA+TGG | 0.414557 | 3_2:+27784534 | Msa0401520:CDS |
| TAAGCTGAAATGTTTGGTCT+TGG | 0.428249 | 3_2:-27784297 | None:intergenic |
| AGACAATGCCATAGATGTTA+AGG | 0.431710 | 3_2:+27783699 | Msa0401520:CDS |
| TAAGCTGAAATGTTTGGTCT+TGG | 0.436584 | 3_2:-27784453 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.440374 | 3_2:-27783913 | None:intergenic |
| AGACAACGCCATAGATGTTA+AGG | 0.442581 | 3_2:+27784011 | Msa0401520:CDS |
| CCTCACTAAACGCCTTCTCT+TGG | 0.445647 | 3_2:-27783486 | None:intergenic |
| TAAGCTGAAATATTAGGTCT+TGG | 0.447614 | 3_2:-27784063 | None:intergenic |
| TTGCCATAAGCTGAAATGTT+TGG | 0.452597 | 3_2:-27784459 | None:intergenic |
| TAAGCTGAAATGTTGGGCCT+TGG | 0.454026 | 3_2:-27784375 | None:intergenic |
| TAAGCTGAAATATTGGGTCT+TGG | 0.456037 | 3_2:-27783829 | None:intergenic |
| TAAGCTGAAATATTAGGTCT+TGG | 0.457286 | 3_2:-27783751 | None:intergenic |
| TCTTGGTTCGAAGTCATTAG+TGG | 0.459059 | 3_2:-27783890 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.464437 | 3_2:-27783907 | None:intergenic |
| TAAGCTGAAATGTTGGGTCT+TGG | 0.464437 | 3_2:-27784141 | None:intergenic |
| CTCACTAAACGCCTTCTCTT+GGG | 0.465546 | 3_2:-27783485 | None:intergenic |
| TCGTGGTTCAAAATCTTTAA+CGG | 0.469737 | 3_2:-27783656 | None:intergenic |
| CTTGGTTCGAAATCTTCGAC+TGG | 0.470352 | 3_2:-27784357 | None:intergenic |
| AGACCTAATATTTCAGCTTA+CGG | 0.471619 | 3_2:+27783754 | Msa0401520:CDS |
| TCTTGGTTCGAAATCATTAG+TGG | 0.478546 | 3_2:-27784124 | None:intergenic |
| TATGCTGAAATATTCGGCCT+TGG | 0.481023 | 3_2:-27784531 | None:intergenic |
| AGGCCCAACATTTCAGCTTA+CGG | 0.484733 | 3_2:+27784378 | Msa0401520:CDS |
| CATCAATGTTGATGAAAAGA+AGG | 0.487177 | 3_2:+27783942 | Msa0401520:CDS |
| AATAAAGTTTGTAGCAATTG+TGG | 0.494400 | 3_2:+27783354 | Msa0401520:intron |
| TCTCCATAAGCTGAACTGTT+GGG | 0.494498 | 3_2:-27783601 | None:intergenic |
| TGGCATTGACACCAAGGAAA+AGG | 0.495726 | 3_2:+27784485 | Msa0401520:CDS |
| TCTCCATAAGCTGAAATGTT+GGG | 0.499953 | 3_2:-27784147 | None:intergenic |
| TTCTCCATAAGCTGAAATGT+TGG | 0.502734 | 3_2:-27783914 | None:intergenic |
| CATCGATGTTAATGAAAAGA+AGG | 0.503693 | 3_2:+27784176 | Msa0401520:CDS |
| GTCTCCGTAAGCTGAAATGT+TGG | 0.509298 | 3_2:-27784382 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.510874 | 3_2:-27784225 | None:intergenic |
| GGAAAAGAACGGAGCCACTA+AGG | 0.513105 | 3_2:+27784266 | Msa0401520:CDS |
| CTCTCCATAAGCTGAAATGT+TGG | 0.517327 | 3_2:-27784148 | None:intergenic |
| TCTCCGTAAGCTGAAATGTT+GGG | 0.518561 | 3_2:-27784381 | None:intergenic |
| TCTACATAAGCCGAAATGTT+GGG | 0.523987 | 3_2:-27783991 | None:intergenic |
| TCTCCATAAGCTGAAATGTT+GGG | 0.525189 | 3_2:-27783679 | None:intergenic |
| ATCTCCATAAGCTGAAATGT+TGG | 0.531489 | 3_2:-27784226 | None:intergenic |
| CATGAAAGAGCAAGACATAC+CGG | 0.535405 | 3_2:+27783414 | Msa0401520:CDS |
| GTCTCCATAAGCTGAAATGT+TGG | 0.536347 | 3_2:-27783680 | None:intergenic |
| GTCTCCATAAGCTGAACTGT+TGG | 0.538596 | 3_2:-27783602 | None:intergenic |
| TGTCTATATGAGTTTAGTGT+TGG | 0.540100 | 3_2:-27780714 | None:intergenic |
| TGAAAAGAAGGCAGCCGCTA+AGG | 0.542433 | 3_2:+27783954 | Msa0401520:CDS |
| ATTTCAGCATACGAAAATGA+TGG | 0.543256 | 3_2:+27783529 | Msa0401520:CDS |
| GTCTACATAAGCCGAAATGT+TGG | 0.560750 | 3_2:-27783992 | None:intergenic |
| GACATACCGGAAGAAATTCA+AGG | 0.576602 | 3_2:+27783427 | Msa0401520:CDS |
| ATTTCAGCTTATGGCAACAA+TGG | 0.578529 | 3_2:+27784465 | Msa0401520:CDS |
| TAAGCTGAAATGTTGGGCCG+TGG | 0.583691 | 3_2:-27784219 | None:intergenic |
| TCGTGGTTCAAAATCCTTAG+CGG | 0.585471 | 3_2:-27783968 | None:intergenic |
| TAATCTCAATACCCAAGAGA+AGG | 0.591469 | 3_2:+27783474 | Msa0401520:CDS |
| TAAGCTGAAATGTTGGGTCG+TGG | 0.596199 | 3_2:-27783673 | None:intergenic |
| CTTACCAAGAAAAGCAAGAG+AGG | 0.596916 | 3_2:-27780786 | None:intergenic |
| ATTGAAGTTAAGGAAAGGAA+AGG | 0.598639 | 3_2:+27783631 | Msa0401520:CDS |
| TAAGCCGAAATGTTGGGTCG+TGG | 0.610915 | 3_2:-27783985 | None:intergenic |
| ATGACATTGAAGTTAAGGAA+AGG | 0.611961 | 3_2:+27783626 | Msa0401520:CDS |
| CAACAATGGCATTGACACCA+AGG | 0.613741 | 3_2:+27784479 | Msa0401520:CDS |
| GAAAATAGGAAAGATGTCAA+AGG | 0.620259 | 3_2:+27783565 | Msa0401520:CDS |
| ATTGATGCAAAGGAAAAGAA+CGG | 0.631469 | 3_2:+27784255 | Msa0401520:CDS |
| AGATGATGCCATTGATGCAA+AGG | 0.631796 | 3_2:+27784245 | Msa0401520:CDS |
| CCAAGAGAAGGCGTTTAGTG+AGG | 0.645806 | 3_2:+27783486 | Msa0401520:CDS |
| TGAAAAGAAGGCAGCCACTG+AGG | 0.664629 | 3_2:+27784188 | Msa0401520:CDS |
| CCGTGGTTCAAAATCCTCAG+TGG | 0.686559 | 3_2:-27784202 | None:intergenic |
| CAGTCGAAGATTTCGAACCA+AGG | 0.694219 | 3_2:+27784358 | Msa0401520:CDS |
| AAATGATGGCACTAACACCA+AGG | 0.696723 | 3_2:+27783543 | Msa0401520:CDS |
| CTAAACTCATATAGACATCG+AGG | 0.770323 | 3_2:+27780720 | Msa0401520:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr3_2:27782242-27782261 | Msa0401520:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr3_2:27782243-27782262 | Msa0401520:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr3_2:27782243-27782262 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr3_2:27782242-27782261 | None:intergenic | 0.0% |
| !! | AAAAAAAAATAAGGTTAATT+TGG | + | chr3_2:27781427-27781446 | Msa0401520:intron | 10.0% |
| !!! | TTTATATATAATAGAAGTAT+AGG | + | chr3_2:27782088-27782107 | Msa0401520:intron | 10.0% |
| !!! | TCATTTTATAAGTATTATTA+AGG | + | chr3_2:27782406-27782425 | Msa0401520:intron | 10.0% |
| !! | ATTTACTTAATTATATTCTT+GGG | - | chr3_2:27782825-27782844 | None:intergenic | 10.0% |
| !! | TAGAATATATAGTAATATAA+TGG | + | chr3_2:27782854-27782873 | Msa0401520:intron | 10.0% |
| !!! | TATTTTTTTTTAAATAGTCT+AGG | + | chr3_2:27782935-27782954 | Msa0401520:intron | 10.0% |
| !!! | ATTTTTTTTTAAATAGTCTA+GGG | + | chr3_2:27782936-27782955 | Msa0401520:intron | 10.0% |
| !!! | ACCTTATTTTTTTTTTTTGA+GGG | - | chr3_2:27781422-27781441 | None:intergenic | 15.0% |
| !!! | AACCTTATTTTTTTTTTTTG+AGG | - | chr3_2:27781423-27781442 | None:intergenic | 15.0% |
| !!! | CTTTTTTGTTTCTTTTTTTA+AGG | + | chr3_2:27782537-27782556 | Msa0401520:intron | 15.0% |
| !! | TTAATTAGAATATAAACGAA+AGG | + | chr3_2:27782602-27782621 | Msa0401520:intron | 15.0% |
| !! | TAATTAGAATATAAACGAAA+GGG | + | chr3_2:27782603-27782622 | Msa0401520:intron | 15.0% |
| !!! | TGTTTTAGTAAATTATAAGT+GGG | + | chr3_2:27782626-27782645 | Msa0401520:intron | 15.0% |
| !! | TTTACTTAATTATATTCTTG+GGG | - | chr3_2:27782824-27782843 | None:intergenic | 15.0% |
| !! | GATTTACTTAATTATATTCT+TGG | - | chr3_2:27782826-27782845 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAAATAGTCTAG+GGG | + | chr3_2:27782937-27782956 | Msa0401520:intron | 15.0% |
| !! | TTGCATAATATATATAAGAT+TGG | - | chr3_2:27783015-27783034 | None:intergenic | 15.0% |
| !! | TACAAATAGTGACAATTAAA+AGG | - | chr3_2:27780892-27780911 | None:intergenic | 20.0% |
| !! | TCCCTCAAAAAAAAAAAATA+AGG | + | chr3_2:27781418-27781437 | Msa0401520:intron | 20.0% |
| !! | GAATTAATCAATCACTAATA+AGG | + | chr3_2:27781523-27781542 | Msa0401520:intron | 20.0% |
| !! | AATCACTAATAAGGTTAATT+TGG | + | chr3_2:27781532-27781551 | Msa0401520:intron | 20.0% |
| !! | TTAAGTGATAGTTAAATCTA+GGG | - | chr3_2:27781947-27781966 | None:intergenic | 20.0% |
| !! | TTTAAGTGATAGTTAAATCT+AGG | - | chr3_2:27781948-27781967 | None:intergenic | 20.0% |
| !!! | CTACTTTGTCATTTTTATAA+TGG | - | chr3_2:27781986-27782005 | None:intergenic | 20.0% |
| !!! | TTAAAGAGCATTCATTAATT+TGG | - | chr3_2:27782059-27782078 | None:intergenic | 20.0% |
| !! | ATCATATAACAAAAAGAGTT+GGG | - | chr3_2:27782206-27782225 | None:intergenic | 20.0% |
| !! | AATCATATAACAAAAAGAGT+TGG | - | chr3_2:27782207-27782226 | None:intergenic | 20.0% |
| !!! | ATAATAAAGACAAGCTTTTA+AGG | - | chr3_2:27782489-27782508 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGTAAATTATAAG+TGG | + | chr3_2:27782625-27782644 | Msa0401520:intron | 20.0% |
| !! | ATATATATATGTTAACCCTT+TGG | + | chr3_2:27782739-27782758 | Msa0401520:intron | 20.0% |
| !!! | AATTTTTCTTTAGAACCAAA+GGG | - | chr3_2:27782757-27782776 | None:intergenic | 20.0% |
| !!! | AAATTTTTCTTTAGAACCAA+AGG | - | chr3_2:27782758-27782777 | None:intergenic | 20.0% |
| !!! | GCTAGATATTTACTTTTTTA+AGG | + | chr3_2:27782959-27782978 | Msa0401520:intron | 20.0% |
| !!! | ATAATGATTATTTGAAACAC+GGG | - | chr3_2:27783072-27783091 | None:intergenic | 20.0% |
| !!! | GATAATGATTATTTGAAACA+CGG | - | chr3_2:27783073-27783092 | None:intergenic | 20.0% |
| !! | ATAAATTGGATCATATAGTT+AGG | - | chr3_2:27783105-27783124 | None:intergenic | 20.0% |
| ! | TTGAGTATCTACCTATAAAT+AGG | + | chr3_2:27780664-27780683 | Msa0401520:five_prime_UTR | 25.0% |
| ! | CAAGTTAATCACCTATTTAT+AGG | - | chr3_2:27780678-27780697 | None:intergenic | 25.0% |
| !!! | ATAGGTGATTAACTTGTTAT+AGG | + | chr3_2:27780682-27780701 | Msa0401520:five_prime_UTR | 25.0% |
| ! | GACAACTATAAAGTAAAAGA+TGG | + | chr3_2:27781119-27781138 | Msa0401520:intron | 25.0% |
| ! | TAGACATAGTATTCATTAGA+TGG | - | chr3_2:27781274-27781293 | None:intergenic | 25.0% |
| ! | GAATTAATCACTCACTAATA+AGG | + | chr3_2:27781384-27781403 | Msa0401520:intron | 25.0% |
| ! | ACTCACTAATAAGGTTAATT+TGG | + | chr3_2:27781393-27781412 | Msa0401520:intron | 25.0% |
| ! | ACATGAAAAGTAAAAACGAA+AGG | + | chr3_2:27782021-27782040 | Msa0401520:intron | 25.0% |
| ! | CATGAAAAGTAAAAACGAAA+GGG | + | chr3_2:27782022-27782041 | Msa0401520:intron | 25.0% |
| !!! | GCAGCTTAATAATTTTAAGT+GGG | - | chr3_2:27782351-27782370 | None:intergenic | 25.0% |
| !! | TGCAGCTTAATAATTTTAAG+TGG | - | chr3_2:27782352-27782371 | None:intergenic | 25.0% |
| !! | ATATTTGGAATGATGAAAGT+GGG | - | chr3_2:27782461-27782480 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGATGAAAG+TGG | - | chr3_2:27782462-27782481 | None:intergenic | 25.0% |
| !!! | GCTTTTAAGGAAACAATATT+TGG | - | chr3_2:27782476-27782495 | None:intergenic | 25.0% |
| ! | ATGTTAATATGAGATTCAGT+TGG | + | chr3_2:27782781-27782800 | Msa0401520:intron | 25.0% |
| ! | TGTTAATATGAGATTCAGTT+GGG | + | chr3_2:27782782-27782801 | Msa0401520:intron | 25.0% |
| ! | GTTAGGAATAGAATAAAATG+TGG | - | chr3_2:27783172-27783191 | None:intergenic | 25.0% |
| ! | AACAGAACAAGAAAAGAATA+TGG | - | chr3_2:27783207-27783226 | None:intergenic | 25.0% |
| ! | AATAAAGTTTGTAGCAATTG+TGG | + | chr3_2:27783354-27783373 | Msa0401520:intron | 25.0% |
| !! | ATTTTCGTATGCTGAAATAT+TGG | - | chr3_2:27783527-27783546 | None:intergenic | 25.0% |
| ! | GTTGATGTTAAGAAAAAGAA+GGG | + | chr3_2:27783787-27783806 | Msa0401520:CDS | 25.0% |
| TGTCTATATGAGTTTAGTGT+TGG | - | chr3_2:27780717-27780736 | None:intergenic | 30.0% | |
| ATTTGATGCAATTGAAACAC+AGG | + | chr3_2:27780994-27781013 | Msa0401520:intron | 30.0% | |
| GCAAAGCTGACAATTATTAT+GGG | - | chr3_2:27781179-27781198 | None:intergenic | 30.0% | |
| TGCAAAGCTGACAATTATTA+TGG | - | chr3_2:27781180-27781199 | None:intergenic | 30.0% | |
| TTGTCAGCTTTGCAAATAAA+AGG | + | chr3_2:27781186-27781205 | Msa0401520:intron | 30.0% | |
| ! | GAAAGTGCAATGAACAATTA+TGG | - | chr3_2:27781603-27781622 | None:intergenic | 30.0% |
| ! | AACAACGATAATGAAAGTGT+AGG | - | chr3_2:27781712-27781731 | None:intergenic | 30.0% |
| GCTAAATCATACTTTCAACT+TGG | + | chr3_2:27781915-27781934 | Msa0401520:intron | 30.0% | |
| ! | GAGCATTCATTAATTTGGAT+TGG | - | chr3_2:27782054-27782073 | None:intergenic | 30.0% |
| ACACCAAACTAAAAACACTA+AGG | + | chr3_2:27782306-27782325 | Msa0401520:intron | 30.0% | |
| GTAAATAATCAAGTGTGTGT+AGG | - | chr3_2:27782384-27782403 | None:intergenic | 30.0% | |
| ! | ACTTGCACCTTTGTATTTTT+AGG | + | chr3_2:27782661-27782680 | Msa0401520:intron | 30.0% |
| ACACCTACCTAAAAATACAA+AGG | - | chr3_2:27782671-27782690 | None:intergenic | 30.0% | |
| CTTAATTATATTCTTGGGGT+AGG | - | chr3_2:27782820-27782839 | None:intergenic | 30.0% | |
| ATATGATCCAATTTATCACG+AGG | + | chr3_2:27783109-27783128 | Msa0401520:intron | 30.0% | |
| TATGGAATATGACAAGTGTT+AGG | - | chr3_2:27783189-27783208 | None:intergenic | 30.0% | |
| CACTACATTTACTATGCATT+TGG | + | chr3_2:27783292-27783311 | Msa0401520:intron | 30.0% | |
| TAAGCCAAAAGAAAAAACGA+TGG | - | chr3_2:27783319-27783338 | None:intergenic | 30.0% | |
| !!! | TACTTTTAGTGTTGACGTTA+AGG | - | chr3_2:27783456-27783475 | None:intergenic | 30.0% |
| TATGCTGAAATATTGGATCT+TGG | - | chr3_2:27783520-27783539 | None:intergenic | 30.0% | |
| ATTTCAGCATACGAAAATGA+TGG | + | chr3_2:27783529-27783548 | Msa0401520:CDS | 30.0% | |
| GAAAATAGGAAAGATGTCAA+AGG | + | chr3_2:27783565-27783584 | Msa0401520:CDS | 30.0% | |
| AGACAATGACATTGAAGTTA+AGG | + | chr3_2:27783621-27783640 | Msa0401520:CDS | 30.0% | |
| ATGACATTGAAGTTAAGGAA+AGG | + | chr3_2:27783626-27783645 | Msa0401520:CDS | 30.0% | |
| ATTGAAGTTAAGGAAAGGAA+AGG | + | chr3_2:27783631-27783650 | Msa0401520:CDS | 30.0% | |
| TCGTGGTTCAAAATCTTTAA+CGG | - | chr3_2:27783659-27783678 | None:intergenic | 30.0% | |
| ! | CTTCTTTTCCTTAACATCTA+TGG | - | chr3_2:27783710-27783729 | None:intergenic | 30.0% |
| TAAGCTGAAATATTAGGTCT+TGG | - | chr3_2:27783754-27783773 | None:intergenic | 30.0% | |
| AGACCTAATATTTCAGCTTA+CGG | + | chr3_2:27783754-27783773 | Msa0401520:CDS | 30.0% | |
| CGTTGATGTTAAGAAAAAGA+AGG | + | chr3_2:27783786-27783805 | Msa0401520:CDS | 30.0% | |
| TCTCCATAAGCTGAAATATT+GGG | - | chr3_2:27783838-27783857 | None:intergenic | 30.0% | |
| TTCTCCATAAGCTGAAATAT+TGG | - | chr3_2:27783839-27783858 | None:intergenic | 30.0% | |
| ! | CATCAATGTTGATGAAAAGA+AGG | + | chr3_2:27783942-27783961 | Msa0401520:CDS | 30.0% |
| ! | CTTCTTTTCCTTAACATCTA+TGG | - | chr3_2:27783710-27783729 | None:intergenic | 30.0% |
| TAAGCTGAAATATTAGGTCT+TGG | - | chr3_2:27783754-27783773 | None:intergenic | 30.0% | |
| AGACCTAATATTTCAGCTTA+TGG | + | chr3_2:27783754-27783773 | Msa0401520:CDS | 30.0% | |
| TCTCCATAAGCTGAAATATT+AGG | - | chr3_2:27783838-27783857 | None:intergenic | 30.0% | |
| CATCGATGTTAATGAAAAGA+AGG | + | chr3_2:27784176-27784195 | Msa0401520:CDS | 30.0% | |
| ATTGATGCAAAGGAAAAGAA+CGG | + | chr3_2:27784255-27784274 | Msa0401520:CDS | 30.0% | |
| TCTCCATATGCTGAAATATT+CGG | - | chr3_2:27784540-27784559 | None:intergenic | 30.0% | |
| CTAAACTCATATAGACATCG+AGG | + | chr3_2:27780720-27780739 | Msa0401520:five_prime_UTR | 35.0% | |
| ! | AACGATAATGAAAGTGTAGG+AGG | - | chr3_2:27781709-27781728 | None:intergenic | 35.0% |
| !!! | GCACCTTAGTGTTTTTAGTT+TGG | - | chr3_2:27782312-27782331 | None:intergenic | 35.0% |
| AAGTGGGTGTAAATTAGTGA+AGG | - | chr3_2:27782445-27782464 | None:intergenic | 35.0% | |
| AAAAGACGATGACATGCTTA+AGG | - | chr3_2:27782522-27782541 | None:intergenic | 35.0% | |
| !!! | GCACCTTTGTATTTTTAGGT+AGG | + | chr3_2:27782665-27782684 | Msa0401520:intron | 35.0% |
| CTGATGCTGAAATGAAACAT+GGG | - | chr3_2:27782892-27782911 | None:intergenic | 35.0% | |
| ACTGATGCTGAAATGAAACA+TGG | - | chr3_2:27782893-27782912 | None:intergenic | 35.0% | |
| !! | ATGAGCTAGCTTAGTTTGTA+GGG | - | chr3_2:27783041-27783060 | None:intergenic | 35.0% |
| !! | TATGAGCTAGCTTAGTTTGT+AGG | - | chr3_2:27783042-27783061 | None:intergenic | 35.0% |
| ! | TAACTTGCCTCGTGATAAAT+TGG | - | chr3_2:27783119-27783138 | None:intergenic | 35.0% |
| !!! | TGGACCATCGTTTTTTCTTT+TGG | + | chr3_2:27783312-27783331 | Msa0401520:intron | 35.0% |
| GAAATGATCTGCGAGAATAT+TGG | + | chr3_2:27783383-27783402 | Msa0401520:CDS | 35.0% | |
| TAATCTCAATACCCAAGAGA+AGG | + | chr3_2:27783474-27783493 | Msa0401520:CDS | 35.0% | |
| ! | GACATCTTTCCTATTTTCCT+TGG | - | chr3_2:27783563-27783582 | None:intergenic | 35.0% |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_2:27783682-27783701 | None:intergenic | 35.0% | |
| AGACAATGCCATAGATGTTA+AGG | + | chr3_2:27783699-27783718 | Msa0401520:CDS | 35.0% | |
| TCTCCGTAAGCTGAAATATT+AGG | - | chr3_2:27783760-27783779 | None:intergenic | 35.0% | |
| TAAGCTGAAATATTGGGTCT+TGG | - | chr3_2:27783832-27783851 | None:intergenic | 35.0% | |
| AGACCCAATATTTCAGCTTA+TGG | + | chr3_2:27783832-27783851 | Msa0401520:CDS | 35.0% | |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_2:27783682-27783701 | None:intergenic | 35.0% | |
| TTCTCCATAAGCTGAAATGT+TGG | - | chr3_2:27783917-27783936 | None:intergenic | 35.0% | |
| TCTACATAAGCCGAAATGTT+GGG | - | chr3_2:27783994-27784013 | None:intergenic | 35.0% | |
| ! | TCTTGGTTCGAAATCTTTGA+TGG | - | chr3_2:27783737-27783756 | None:intergenic | 35.0% |
| ! | TCTTGGTTCGAAATCATTAG+TGG | - | chr3_2:27784127-27784146 | None:intergenic | 35.0% |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_2:27783682-27783701 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAATGTT+GGG | - | chr3_2:27783682-27783701 | None:intergenic | 35.0% | |
| ATCTCCATAAGCTGAAATGT+TGG | - | chr3_2:27784229-27784248 | None:intergenic | 35.0% | |
| ! | GTTCTTTTCCTTTGCATCAA+TGG | - | chr3_2:27784256-27784275 | None:intergenic | 35.0% |
| TCTTGGTTCAAAATCCTTAG+TGG | - | chr3_2:27784283-27784302 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTTGGTCT+TGG | - | chr3_2:27784300-27784319 | None:intergenic | 35.0% | |
| AGACCAAACATTTCAGCTTA+TGG | + | chr3_2:27784300-27784319 | Msa0401520:CDS | 35.0% | |
| TCTCCATAAGCTGAAATGTT+TGG | - | chr3_2:27783682-27783701 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTTGGTCT+TGG | - | chr3_2:27784300-27784319 | None:intergenic | 35.0% | |
| AGACCAAACATTTCAGCTTA+TGG | + | chr3_2:27784300-27784319 | Msa0401520:CDS | 35.0% | |
| TTGCCATAAGCTGAAATGTT+TGG | - | chr3_2:27784462-27784481 | None:intergenic | 35.0% | |
| ATTTCAGCTTATGGCAACAA+TGG | + | chr3_2:27784465-27784484 | Msa0401520:CDS | 35.0% | |
| !! | ATTGCCTCTCTTGCTTTTCT+TGG | + | chr3_2:27780782-27780801 | Msa0401520:CDS | 40.0% |
| CTTACCAAGAAAAGCAAGAG+AGG | - | chr3_2:27780789-27780808 | None:intergenic | 40.0% | |
| TGATGCAATTGAAACACAGG+TGG | + | chr3_2:27780997-27781016 | Msa0401520:intron | 40.0% | |
| TATCACGAGGCAAGTTAGTA+AGG | + | chr3_2:27783122-27783141 | Msa0401520:intron | 40.0% | |
| AAATGTGGATGCCTTTGCTA+AGG | - | chr3_2:27783157-27783176 | None:intergenic | 40.0% | |
| CATGAAAGAGCAAGACATAC+CGG | + | chr3_2:27783414-27783433 | Msa0401520:CDS | 40.0% | |
| GACATACCGGAAGAAATTCA+AGG | + | chr3_2:27783427-27783446 | Msa0401520:CDS | 40.0% | |
| AGGAGTCCTTGAATTTCTTC+CGG | - | chr3_2:27783436-27783455 | None:intergenic | 40.0% | |
| AAATGATGGCACTAACACCA+AGG | + | chr3_2:27783543-27783562 | Msa0401520:CDS | 40.0% | |
| GCACTAACACCAAGGAAAAT+AGG | + | chr3_2:27783551-27783570 | Msa0401520:CDS | 40.0% | |
| TCTCCATAAGCTGAACTGTT+GGG | - | chr3_2:27783604-27783623 | None:intergenic | 40.0% | |
| GTCTCCATAAGCTGAAATGT+TGG | - | chr3_2:27783683-27783702 | None:intergenic | 40.0% | |
| ! | TCTTGGTTCGAAGTCATTAG+TGG | - | chr3_2:27783893-27783912 | None:intergenic | 40.0% |
| TAAGCTGAAATGTTGGGTCT+TGG | - | chr3_2:27783910-27783929 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+TGG | + | chr3_2:27783910-27783929 | Msa0401520:CDS | 40.0% | |
| TCGTGGTTCAAAATCCTTAG+CGG | - | chr3_2:27783971-27783990 | None:intergenic | 40.0% | |
| GTCTACATAAGCCGAAATGT+TGG | - | chr3_2:27783995-27784014 | None:intergenic | 40.0% | |
| AGACAACGCCATAGATGTTA+AGG | + | chr3_2:27784011-27784030 | Msa0401520:CDS | 40.0% | |
| TAAGCTGAAATGTTGGGTCT+TGG | - | chr3_2:27783910-27783929 | None:intergenic | 40.0% | |
| AGACCCAACATTTCAGCTTA+TGG | + | chr3_2:27783910-27783929 | Msa0401520:CDS | 40.0% | |
| CTCTCCATAAGCTGAAATGT+TGG | - | chr3_2:27784151-27784170 | None:intergenic | 40.0% | |
| AGATGATGCCATTGATGCAA+AGG | + | chr3_2:27784245-27784264 | Msa0401520:CDS | 40.0% | |
| TCTCCGTAAGCTGAAATGTT+GGG | - | chr3_2:27784384-27784403 | None:intergenic | 40.0% | |
| ! | CTGCCAAAGATTTTGAACCA+AGG | + | chr3_2:27784514-27784533 | Msa0401520:CDS | 40.0% |
| TATGCTGAAATATTCGGCCT+TGG | - | chr3_2:27784534-27784553 | None:intergenic | 40.0% | |
| AGGCCGAATATTTCAGCATA+TGG | + | chr3_2:27784534-27784553 | Msa0401520:CDS | 40.0% | |
| !! | AGAAAGATGAGAGTGCCTTG+AGG | - | chr3_2:27781797-27781816 | None:intergenic | 45.0% |
| CTCACTAAACGCCTTCTCTT+GGG | - | chr3_2:27783488-27783507 | None:intergenic | 45.0% | |
| TAAGCTGAACTGTTGGGTCT+TGG | - | chr3_2:27783598-27783617 | None:intergenic | 45.0% | |
| AGACCCAACAGTTCAGCTTA+TGG | + | chr3_2:27783598-27783617 | Msa0401520:CDS | 45.0% | |
| GTCTCCATAAGCTGAACTGT+TGG | - | chr3_2:27783605-27783624 | None:intergenic | 45.0% | |
| TAAGCTGAAATGTTGGGTCG+TGG | - | chr3_2:27783676-27783695 | None:intergenic | 45.0% | |
| CGACCCAACATTTCAGCTTA+TGG | + | chr3_2:27783676-27783695 | Msa0401520:CDS | 45.0% | |
| TGAACCACGACCCAACATTT+CGG | + | chr3_2:27783669-27783688 | Msa0401520:CDS | 45.0% | |
| ! | CCACTGAGGATTTTGAACCA+CGG | + | chr3_2:27784202-27784221 | Msa0401520:CDS | 45.0% |
| ! | CTTGGTTCGAAATCTTCGAC+TGG | - | chr3_2:27784360-27784379 | None:intergenic | 45.0% |
| CAGTCGAAGATTTCGAACCA+AGG | + | chr3_2:27784358-27784377 | Msa0401520:CDS | 45.0% | |
| TAAGCTGAAATGTTGGGCCT+TGG | - | chr3_2:27784378-27784397 | None:intergenic | 45.0% | |
| AGGCCCAACATTTCAGCTTA+CGG | + | chr3_2:27784378-27784397 | Msa0401520:CDS | 45.0% | |
| GTCTCCGTAAGCTGAAATGT+TGG | - | chr3_2:27784385-27784404 | None:intergenic | 45.0% | |
| !! | CAACAATGGCATTGACACCA+AGG | + | chr3_2:27784479-27784498 | Msa0401520:CDS | 45.0% |
| !! | TGGCATTGACACCAAGGAAA+AGG | + | chr3_2:27784485-27784504 | Msa0401520:CDS | 45.0% |
| CGGCCTTGGTTCAAAATCTT+TGG | - | chr3_2:27784520-27784539 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTATAAAAGA+TGG | - | chr3_2:27780853-27780872 | None:intergenic | 5.0% |
| !! | TTATAAAAAAAAAAAATTCA+AGG | - | chr3_2:27781825-27781844 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr3_2:27782274-27782293 | None:intergenic | 5.0% |
| AATCGCGACCAGTGAATCGT+TGG | - | chr3_2:27781671-27781690 | None:intergenic | 50.0% | |
| TATTTCGCACGCATGCCTCA+AGG | + | chr3_2:27781779-27781798 | Msa0401520:intron | 50.0% | |
| GGTGACTCACACCTTAGCAA+AGG | + | chr3_2:27783143-27783162 | Msa0401520:intron | 50.0% | |
| CCTCACTAAACGCCTTCTCT+TGG | - | chr3_2:27783489-27783508 | None:intergenic | 50.0% | |
| !! | CCAAGAGAAGGCGTTTAGTG+AGG | + | chr3_2:27783486-27783505 | Msa0401520:CDS | 50.0% |
| TGAAAAGAAGGCAGCCGCTA+AGG | + | chr3_2:27783954-27783973 | Msa0401520:CDS | 50.0% | |
| TAAGCCGAAATGTTGGGTCG+TGG | - | chr3_2:27783988-27784007 | None:intergenic | 50.0% | |
| TGAAAAGAAGGCAGCCACTG+AGG | + | chr3_2:27784188-27784207 | Msa0401520:CDS | 50.0% | |
| CCGTGGTTCAAAATCCTCAG+TGG | - | chr3_2:27784205-27784224 | None:intergenic | 50.0% | |
| TAAGCTGAAATGTTGGGCCG+TGG | - | chr3_2:27784222-27784241 | None:intergenic | 50.0% | |
| CGGCCCAACATTTCAGCTTA+TGG | + | chr3_2:27784222-27784241 | Msa0401520:CDS | 50.0% | |
| GGAAAAGAACGGAGCCACTA+AGG | + | chr3_2:27784266-27784285 | Msa0401520:CDS | 50.0% | |
| ! | GGCAGCTTTCTCCTTTTCCT+TGG | - | chr3_2:27784499-27784518 | None:intergenic | 50.0% |
| GCGCACTACCAACGATTCAC+TGG | + | chr3_2:27781660-27781679 | Msa0401520:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 27780657 | 27784566 | 27780657 | ID=Msa0401520;Name=Msa0401520 |
| chr3_2 | mRNA | 27780657 | 27784566 | 27780657 | ID=Msa0401520-mRNA-1;Parent=Msa0401520;Name=Msa0401520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105|1|0.5|1|0|0|2|0|415 |
| chr3_2 | exon | 27780657 | 27780803 | 27780657 | ID=Msa0401520-mRNA-1:exon:5705;Parent=Msa0401520-mRNA-1 |
| chr3_2 | exon | 27783361 | 27784566 | 27783361 | ID=Msa0401520-mRNA-1:exon:5706;Parent=Msa0401520-mRNA-1 |
| chr3_2 | five_prime_UTR | 27780657 | 27780761 | 27780657 | ID=Msa0401520-mRNA-1:five_prime_utr;Parent=Msa0401520-mRNA-1 |
| chr3_2 | CDS | 27780762 | 27780803 | 27780762 | ID=Msa0401520-mRNA-1:cds;Parent=Msa0401520-mRNA-1 |
| chr3_2 | CDS | 27783361 | 27784566 | 27783361 | ID=Msa0401520-mRNA-1:cds;Parent=Msa0401520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
