Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357110 | XP_013459502.1 | 97.026 | 269 | 8 | 0 | 1 | 269 | 1 | 269 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357110 | sp|J9U5U9|DAD2_PETHY | 39.231 | 260 | 157 | 1 | 6 | 265 | 3 | 261 | 1.19e-77 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357110 | A0A072UWT8 | 97.026 | 269 | 8 | 0 | 1 | 269 | 1 | 269 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0357010 | Msa0357110 | 0.832725 | 8.022412e-56 | -8.615850e-47 |
| Msa0357110 | Msa0503070 | 0.811007 | 8.681573e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357110 | MtrunA17_Chr3g0093821 | 97.026 | 269 | 8 | 0 | 1 | 269 | 1 | 269 | 0.0 | 543 |
| Msa0357110 | MtrunA17_Chr6g0485021 | 63.498 | 263 | 95 | 1 | 8 | 269 | 17 | 279 | 1.82e-125 | 358 |
| Msa0357110 | MtrunA17_Chr1g0152551 | 38.077 | 260 | 159 | 2 | 7 | 265 | 5 | 263 | 2.97e-73 | 225 |
| Msa0357110 | MtrunA17_Chr5g0401521 | 38.776 | 245 | 148 | 2 | 13 | 256 | 9 | 252 | 5.73e-68 | 213 |
| Msa0357110 | MtrunA17_Chr4g0053741 | 39.796 | 196 | 117 | 1 | 62 | 256 | 6 | 201 | 1.85e-53 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357110 | AT3G24420.1 | 50.185 | 271 | 132 | 2 | 1 | 268 | 1 | 271 | 3.11e-104 | 304 |
| Msa0357110 | AT3G03990.1 | 38.697 | 261 | 159 | 1 | 5 | 265 | 3 | 262 | 8.54e-76 | 231 |
| Msa0357110 | AT4G37470.1 | 42.041 | 245 | 140 | 2 | 13 | 256 | 9 | 252 | 2.06e-71 | 221 |
Find 53 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAATGCCCTATGCTTAT+TGG | 0.241237 | 3_1:-37860087 | None:intergenic |
| TGACATAAAACTATTGTTTC+GGG | 0.281340 | 3_1:-37858831 | None:intergenic |
| TACTTGGATGAGAACATTAA+AGG | 0.285814 | 3_1:+37860105 | Msa0357110:CDS |
| ATGACATAAAACTATTGTTT+CGG | 0.322926 | 3_1:-37858832 | None:intergenic |
| TTGGAACAGACCAGTCTATA+TGG | 0.354404 | 3_1:+37858859 | Msa0357110:CDS |
| TCAATAGAGTCAGCATCATT+TGG | 0.360021 | 3_1:-37859919 | None:intergenic |
| ACAGTCTAGTTCTGTTTGAT+TGG | 0.364702 | 3_1:+37858913 | Msa0357110:CDS |
| TGATGAGTTAATCACTCTTA+TGG | 0.373825 | 3_1:+37859007 | Msa0357110:CDS |
| TGAGGTGCTGAAGGGTATTG+TGG | 0.390938 | 3_1:+37860197 | Msa0357110:CDS |
| AATAAGCATAGGGCATTACT+TGG | 0.397845 | 3_1:+37860089 | Msa0357110:CDS |
| GCTTTCGTATTGAGACTCTA+TGG | 0.399369 | 3_1:-37859863 | None:intergenic |
| TCTGTAATAGCTCCAGAAAA+TGG | 0.417553 | 3_1:-37858936 | None:intergenic |
| TCATTTGGATCCACTGCAAT+AGG | 0.424577 | 3_1:-37859904 | None:intergenic |
| AAAAGCCTGAGCTCTTTAAG+AGG | 0.425563 | 3_1:+37859105 | Msa0357110:CDS |
| TAGAGTCTCAATACGAAAGC+TGG | 0.436550 | 3_1:+37859866 | Msa0357110:CDS |
| CTCATCAGCATAAGGTTCAT+AGG | 0.436848 | 3_1:-37858991 | None:intergenic |
| ACTTGGATGAGAACATTAAA+GGG | 0.437938 | 3_1:+37860106 | Msa0357110:CDS |
| CTATAGAGATATAGTTGAAA+AGG | 0.445888 | 3_1:+37860017 | Msa0357110:CDS |
| CATTAAAGGGATGTCTACTT+TGG | 0.446680 | 3_1:+37860119 | Msa0357110:CDS |
| ATAAATACAGATGACTATAA+AGG | 0.458026 | 3_1:+37859802 | Msa0357110:CDS |
| ACAATCCTCTTAAAGAGCTC+AGG | 0.466269 | 3_1:-37859110 | None:intergenic |
| TGTTTCGGGTCCTGAGCCTA+TGG | 0.470244 | 3_1:-37858817 | None:intergenic |
| CACTCTATGTCTGCTATGAT+AGG | 0.473029 | 3_1:+37859065 | Msa0357110:CDS |
| TTCTTCTTTGTGCTTCCCCA+AGG | 0.483467 | 3_1:+37859132 | Msa0357110:CDS |
| GTGATTAACTCATCAGCATA+AGG | 0.495421 | 3_1:-37858999 | None:intergenic |
| AATCACTCTTATGGATGAGT+TGG | 0.497837 | 3_1:+37859016 | Msa0357110:CDS |
| CAACAAAAGTGATACATTTG+AGG | 0.498332 | 3_1:-37859040 | None:intergenic |
| CTCAGTTAACTGCACACCTA+AGG | 0.500170 | 3_1:+37860169 | Msa0357110:CDS |
| GAGGTGCTGAAGGGTATTGT+GGG | 0.500980 | 3_1:+37860198 | Msa0357110:CDS |
| GTGCAGTTAACTGAGGGAAA+TGG | 0.509673 | 3_1:-37860161 | None:intergenic |
| TCAGCACCTCAACCAACCTT+AGG | 0.510018 | 3_1:-37860185 | None:intergenic |
| TTGGAGTTTATAGATATGAC+TGG | 0.515619 | 3_1:+37860138 | Msa0357110:CDS |
| AAGGTTGGTTGAGGTGCTGA+AGG | 0.529671 | 3_1:+37860188 | Msa0357110:CDS |
| AATGCAAGAACCATAGGCTC+AGG | 0.553052 | 3_1:+37858807 | Msa0357110:CDS |
| GAAAGCTGGGTTTCAGCATA+CGG | 0.556562 | 3_1:+37859880 | Msa0357110:CDS |
| TCTTTAAATGCAAGAACCAT+AGG | 0.556752 | 3_1:+37858801 | Msa0357110:CDS |
| GTGGCAGTTCCAATAAGCAT+AGG | 0.560917 | 3_1:+37860078 | Msa0357110:CDS |
| ACTTGACTGAATGATTGTGC+AGG | 0.563263 | 3_1:-37860049 | None:intergenic |
| AGCATACGGTCCTATTGCAG+TGG | 0.564652 | 3_1:+37859894 | Msa0357110:CDS |
| TTGCATTTAAAGATGTTGAG+AGG | 0.576785 | 3_1:-37858791 | None:intergenic |
| AGAGTCTCAATACGAAAGCT+GGG | 0.578249 | 3_1:+37859867 | Msa0357110:CDS |
| TGCACACCTAAGGTTGGTTG+AGG | 0.583937 | 3_1:+37860179 | Msa0357110:CDS |
| TGGCAGTTCCAATAAGCATA+GGG | 0.586920 | 3_1:+37860079 | Msa0357110:CDS |
| GTTAACTGCACACCTAAGGT+TGG | 0.590880 | 3_1:+37860173 | Msa0357110:CDS |
| CTTGACTGAATGATTGTGCA+GGG | 0.604202 | 3_1:-37860048 | None:intergenic |
| AATACAGATGACTATAAAGG+AGG | 0.635005 | 3_1:+37859805 | Msa0357110:CDS |
| CATTCAGTCAAGTAATGATG+TGG | 0.635222 | 3_1:+37860059 | Msa0357110:CDS |
| TGGTGAAGTTGCAATTACCT+TGG | 0.640152 | 3_1:+37859972 | Msa0357110:CDS |
| CTTAGGTGTGCAGTTAACTG+AGG | 0.642434 | 3_1:-37860168 | None:intergenic |
| AGGTTGGTTGAGGTGCTGAA+GGG | 0.645453 | 3_1:+37860189 | Msa0357110:CDS |
| TTAGGTGTGCAGTTAACTGA+GGG | 0.650507 | 3_1:-37860167 | None:intergenic |
| AAATGCTTGAAAAGAATGGG+TGG | 0.686067 | 3_1:+37859952 | Msa0357110:CDS |
| TTGACTGAATGATTGTGCAG+GGG | 0.705699 | 3_1:-37860047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTGCATGATTATAA+AGG | - | chr3_1:37858968-37858987 | None:intergenic | 15.0% |
| !!! | TAACTTTTTAACTATGTTAT+TGG | + | chr3_1:37859507-37859526 | Msa0357110:intron | 15.0% |
| !!! | TATATTTTGCATGATTATAA+AGG | - | chr3_1:37858968-37858987 | None:intergenic | 15.0% |
| !!! | TAACTTTTTAACTATGTTAT+TGG | + | chr3_1:37859507-37859526 | Msa0357110:intron | 15.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | - | chr3_1:37858835-37858854 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | + | chr3_1:37858835-37858854 | Msa0357110:CDS | 20.0% |
| !! | AATTAGTTATTGACAAAACT+CGG | - | chr3_1:37859546-37859565 | None:intergenic | 20.0% |
| !! | ACCTATGAATGAATAATTAT+GGG | - | chr3_1:37859780-37859799 | None:intergenic | 20.0% |
| !! | TACCTATGAATGAATAATTA+TGG | - | chr3_1:37859781-37859800 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | + | chr3_1:37859802-37859821 | Msa0357110:CDS | 20.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | - | chr3_1:37858835-37858854 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | + | chr3_1:37858835-37858854 | Msa0357110:CDS | 20.0% |
| !! | AATTAGTTATTGACAAAACT+CGG | - | chr3_1:37859546-37859565 | None:intergenic | 20.0% |
| !! | ACCTATGAATGAATAATTAT+GGG | - | chr3_1:37859780-37859799 | None:intergenic | 20.0% |
| !! | TACCTATGAATGAATAATTA+TGG | - | chr3_1:37859781-37859800 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | + | chr3_1:37859802-37859821 | Msa0357110:CDS | 20.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | - | chr3_1:37858834-37858853 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | + | chr3_1:37858834-37858853 | Msa0357110:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | - | chr3_1:37858872-37858891 | None:intergenic | 25.0% |
| !! | CTGTAATTTTCAGTTAAAAG+AGG | - | chr3_1:37858897-37858916 | None:intergenic | 25.0% |
| ! | TGTTAAAACGCTTGATTATT+TGG | + | chr3_1:37859256-37859275 | Msa0357110:intron | 25.0% |
| ! | GAAATCTCATATTGTGTATT+TGG | + | chr3_1:37859280-37859299 | Msa0357110:intron | 25.0% |
| ! | ATTAGTTATTGACAAAACTC+GGG | - | chr3_1:37859545-37859564 | None:intergenic | 25.0% |
| !! | AAACATTTGATGGTACAATA+TGG | + | chr3_1:37859726-37859745 | Msa0357110:intron | 25.0% |
| !! | AACATTTGATGGTACAATAT+GGG | + | chr3_1:37859727-37859746 | Msa0357110:intron | 25.0% |
| ! | TCCCATAATTATTCATTCAT+AGG | + | chr3_1:37859776-37859795 | Msa0357110:intron | 25.0% |
| ! | TCAAAAATGCTTGAAAAGAA+TGG | + | chr3_1:37859948-37859967 | Msa0357110:CDS | 25.0% |
| ! | CAAAAATGCTTGAAAAGAAT+GGG | + | chr3_1:37859949-37859968 | Msa0357110:CDS | 25.0% |
| ! | CTATAGAGATATAGTTGAAA+AGG | + | chr3_1:37860017-37860036 | Msa0357110:CDS | 25.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | - | chr3_1:37858834-37858853 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | + | chr3_1:37858834-37858853 | Msa0357110:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | - | chr3_1:37858872-37858891 | None:intergenic | 25.0% |
| !! | CTGTAATTTTCAGTTAAAAG+AGG | - | chr3_1:37858897-37858916 | None:intergenic | 25.0% |
| ! | TGTTAAAACGCTTGATTATT+TGG | + | chr3_1:37859256-37859275 | Msa0357110:intron | 25.0% |
| ! | GAAATCTCATATTGTGTATT+TGG | + | chr3_1:37859280-37859299 | Msa0357110:intron | 25.0% |
| ! | ATTAGTTATTGACAAAACTC+GGG | - | chr3_1:37859545-37859564 | None:intergenic | 25.0% |
| !! | AAACATTTGATGGTACAATA+TGG | + | chr3_1:37859726-37859745 | Msa0357110:intron | 25.0% |
| !! | AACATTTGATGGTACAATAT+GGG | + | chr3_1:37859727-37859746 | Msa0357110:intron | 25.0% |
| ! | TCCCATAATTATTCATTCAT+AGG | + | chr3_1:37859776-37859795 | Msa0357110:intron | 25.0% |
| ! | TCAAAAATGCTTGAAAAGAA+TGG | + | chr3_1:37859948-37859967 | Msa0357110:CDS | 25.0% |
| ! | CAAAAATGCTTGAAAAGAAT+GGG | + | chr3_1:37859949-37859968 | Msa0357110:CDS | 25.0% |
| ! | CTATAGAGATATAGTTGAAA+AGG | + | chr3_1:37860017-37860036 | Msa0357110:CDS | 25.0% |
| TTGCATTTAAAGATGTTGAG+AGG | - | chr3_1:37858794-37858813 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | + | chr3_1:37858801-37858820 | Msa0357110:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | + | chr3_1:37858840-37858859 | Msa0357110:CDS | 30.0% |
| TGATGAGTTAATCACTCTTA+TGG | + | chr3_1:37859007-37859026 | Msa0357110:CDS | 30.0% | |
| CAACAAAAGTGATACATTTG+AGG | - | chr3_1:37859043-37859062 | None:intergenic | 30.0% | |
| !! | CTCAAATGTATCACTTTTGT+TGG | + | chr3_1:37859041-37859060 | Msa0357110:CDS | 30.0% |
| TTAGTTATTGACAAAACTCG+GGG | - | chr3_1:37859544-37859563 | None:intergenic | 30.0% | |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | - | chr3_1:37859653-37859672 | None:intergenic | 30.0% |
| !!! | GTTTAGCATTTCTAGTTTTG+TGG | - | chr3_1:37859668-37859687 | None:intergenic | 30.0% |
| GTACCATCAAATGTTTGAAT+TGG | - | chr3_1:37859722-37859741 | None:intergenic | 30.0% | |
| AATACAGATGACTATAAAGG+AGG | + | chr3_1:37859805-37859824 | Msa0357110:CDS | 30.0% | |
| TACTTGGATGAGAACATTAA+AGG | + | chr3_1:37860105-37860124 | Msa0357110:CDS | 30.0% | |
| ACTTGGATGAGAACATTAAA+GGG | + | chr3_1:37860106-37860125 | Msa0357110:CDS | 30.0% | |
| TTGGAGTTTATAGATATGAC+TGG | + | chr3_1:37860138-37860157 | Msa0357110:CDS | 30.0% | |
| TTGCATTTAAAGATGTTGAG+AGG | - | chr3_1:37858794-37858813 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | + | chr3_1:37858801-37858820 | Msa0357110:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | + | chr3_1:37858840-37858859 | Msa0357110:CDS | 30.0% |
| TGATGAGTTAATCACTCTTA+TGG | + | chr3_1:37859007-37859026 | Msa0357110:CDS | 30.0% | |
| CAACAAAAGTGATACATTTG+AGG | - | chr3_1:37859043-37859062 | None:intergenic | 30.0% | |
| !! | CTCAAATGTATCACTTTTGT+TGG | + | chr3_1:37859041-37859060 | Msa0357110:CDS | 30.0% |
| TTAGTTATTGACAAAACTCG+GGG | - | chr3_1:37859544-37859563 | None:intergenic | 30.0% | |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | - | chr3_1:37859653-37859672 | None:intergenic | 30.0% |
| !!! | GTTTAGCATTTCTAGTTTTG+TGG | - | chr3_1:37859668-37859687 | None:intergenic | 30.0% |
| GTACCATCAAATGTTTGAAT+TGG | - | chr3_1:37859722-37859741 | None:intergenic | 30.0% | |
| AATACAGATGACTATAAAGG+AGG | + | chr3_1:37859805-37859824 | Msa0357110:CDS | 30.0% | |
| TACTTGGATGAGAACATTAA+AGG | + | chr3_1:37860105-37860124 | Msa0357110:CDS | 30.0% | |
| ACTTGGATGAGAACATTAAA+GGG | + | chr3_1:37860106-37860125 | Msa0357110:CDS | 30.0% | |
| TTGGAGTTTATAGATATGAC+TGG | + | chr3_1:37860138-37860157 | Msa0357110:CDS | 30.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | + | chr3_1:37858913-37858932 | Msa0357110:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | - | chr3_1:37858939-37858958 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | - | chr3_1:37859002-37859021 | None:intergenic | 35.0% | |
| AATCACTCTTATGGATGAGT+TGG | + | chr3_1:37859016-37859035 | Msa0357110:CDS | 35.0% | |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | - | chr3_1:37859102-37859121 | None:intergenic | 35.0% |
| ! | ACATCAGAGAGAGTATATGT+AGG | - | chr3_1:37859172-37859191 | None:intergenic | 35.0% |
| TAGTTATTGACAAAACTCGG+GGG | - | chr3_1:37859543-37859562 | None:intergenic | 35.0% | |
| GAAAAACATAGATGTGAGAG+AGG | - | chr3_1:37859605-37859624 | None:intergenic | 35.0% | |
| !!! | AGCATTTCTAGTTTTGTGGA+AGG | - | chr3_1:37859664-37859683 | None:intergenic | 35.0% |
| !!! | TCACTTTTTTTTCCTAGCCT+AGG | + | chr3_1:37859696-37859715 | Msa0357110:intron | 35.0% |
| ! | TCAAATGTTTGAATTGGCCT+AGG | - | chr3_1:37859716-37859735 | None:intergenic | 35.0% |
| AGGCCAATTCAAACATTTGA+TGG | + | chr3_1:37859716-37859735 | Msa0357110:intron | 35.0% | |
| ! | ATTTGATGGTACAATATGGG+TGG | + | chr3_1:37859730-37859749 | Msa0357110:intron | 35.0% |
| TCAATAGAGTCAGCATCATT+TGG | - | chr3_1:37859922-37859941 | None:intergenic | 35.0% | |
| AAATGCTTGAAAAGAATGGG+TGG | + | chr3_1:37859952-37859971 | Msa0357110:CDS | 35.0% | |
| ! | GTCACTGAAAAACACAGTTT+TGG | - | chr3_1:37859998-37860017 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | + | chr3_1:37860059-37860078 | Msa0357110:CDS | 35.0% | |
| AAGTAATGCCCTATGCTTAT+TGG | - | chr3_1:37860090-37860109 | None:intergenic | 35.0% | |
| ! | AATAAGCATAGGGCATTACT+TGG | + | chr3_1:37860089-37860108 | Msa0357110:CDS | 35.0% |
| CATTAAAGGGATGTCTACTT+TGG | + | chr3_1:37860119-37860138 | Msa0357110:CDS | 35.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | + | chr3_1:37858913-37858932 | Msa0357110:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | - | chr3_1:37858939-37858958 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | - | chr3_1:37859002-37859021 | None:intergenic | 35.0% | |
| AATCACTCTTATGGATGAGT+TGG | + | chr3_1:37859016-37859035 | Msa0357110:CDS | 35.0% | |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | - | chr3_1:37859102-37859121 | None:intergenic | 35.0% |
| ! | ACATCAGAGAGAGTATATGT+AGG | - | chr3_1:37859172-37859191 | None:intergenic | 35.0% |
| TAGTTATTGACAAAACTCGG+GGG | - | chr3_1:37859543-37859562 | None:intergenic | 35.0% | |
| GAAAAACATAGATGTGAGAG+AGG | - | chr3_1:37859605-37859624 | None:intergenic | 35.0% | |
| !!! | AGCATTTCTAGTTTTGTGGA+AGG | - | chr3_1:37859664-37859683 | None:intergenic | 35.0% |
| !!! | TCACTTTTTTTTCCTAGCCT+AGG | + | chr3_1:37859696-37859715 | Msa0357110:intron | 35.0% |
| ! | TCAAATGTTTGAATTGGCCT+AGG | - | chr3_1:37859716-37859735 | None:intergenic | 35.0% |
| AGGCCAATTCAAACATTTGA+TGG | + | chr3_1:37859716-37859735 | Msa0357110:intron | 35.0% | |
| ! | ATTTGATGGTACAATATGGG+TGG | + | chr3_1:37859730-37859749 | Msa0357110:intron | 35.0% |
| TCAATAGAGTCAGCATCATT+TGG | - | chr3_1:37859922-37859941 | None:intergenic | 35.0% | |
| AAATGCTTGAAAAGAATGGG+TGG | + | chr3_1:37859952-37859971 | Msa0357110:CDS | 35.0% | |
| ! | GTCACTGAAAAACACAGTTT+TGG | - | chr3_1:37859998-37860017 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | + | chr3_1:37860059-37860078 | Msa0357110:CDS | 35.0% | |
| AAGTAATGCCCTATGCTTAT+TGG | - | chr3_1:37860090-37860109 | None:intergenic | 35.0% | |
| ! | AATAAGCATAGGGCATTACT+TGG | + | chr3_1:37860089-37860108 | Msa0357110:CDS | 35.0% |
| CATTAAAGGGATGTCTACTT+TGG | + | chr3_1:37860119-37860138 | Msa0357110:CDS | 35.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | - | chr3_1:37858783-37858802 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | + | chr3_1:37858859-37858878 | Msa0357110:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | + | chr3_1:37858924-37858943 | Msa0357110:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | - | chr3_1:37858994-37859013 | None:intergenic | 40.0% | |
| CACTCTATGTCTGCTATGAT+AGG | + | chr3_1:37859065-37859084 | Msa0357110:CDS | 40.0% | |
| AAAAGCCTGAGCTCTTTAAG+AGG | + | chr3_1:37859105-37859124 | Msa0357110:CDS | 40.0% | |
| ACAATCCTCTTAAAGAGCTC+AGG | - | chr3_1:37859113-37859132 | None:intergenic | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | - | chr3_1:37859150-37859169 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | - | chr3_1:37859151-37859170 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | - | chr3_1:37859152-37859171 | None:intergenic | 40.0% |
| TAGTGTCAACGTGTTAGTGA+CGG | - | chr3_1:37859348-37859367 | None:intergenic | 40.0% | |
| CATGTGTTACCGACATATGT+CGG | + | chr3_1:37859411-37859430 | Msa0357110:intron | 40.0% | |
| ! | GAGAGAGGCTACTTTAAAGA+TGG | - | chr3_1:37859590-37859609 | None:intergenic | 40.0% |
| GTGCACTTCTTTATGTGTTG+TGG | - | chr3_1:37859631-37859650 | None:intergenic | 40.0% | |
| GCTTTCGTATTGAGACTCTA+TGG | - | chr3_1:37859866-37859885 | None:intergenic | 40.0% | |
| TAGAGTCTCAATACGAAAGC+TGG | + | chr3_1:37859866-37859885 | Msa0357110:CDS | 40.0% | |
| AGAGTCTCAATACGAAAGCT+GGG | + | chr3_1:37859867-37859886 | Msa0357110:CDS | 40.0% | |
| TCATTTGGATCCACTGCAAT+AGG | - | chr3_1:37859907-37859926 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | + | chr3_1:37859972-37859991 | Msa0357110:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | - | chr3_1:37859992-37860011 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | - | chr3_1:37860050-37860069 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | - | chr3_1:37860051-37860070 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | - | chr3_1:37860052-37860071 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | + | chr3_1:37860079-37860098 | Msa0357110:CDS | 40.0% | |
| TTAGGTGTGCAGTTAACTGA+GGG | - | chr3_1:37860170-37860189 | None:intergenic | 40.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | - | chr3_1:37858783-37858802 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | + | chr3_1:37858859-37858878 | Msa0357110:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | + | chr3_1:37858924-37858943 | Msa0357110:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | - | chr3_1:37858994-37859013 | None:intergenic | 40.0% | |
| CACTCTATGTCTGCTATGAT+AGG | + | chr3_1:37859065-37859084 | Msa0357110:CDS | 40.0% | |
| AAAAGCCTGAGCTCTTTAAG+AGG | + | chr3_1:37859105-37859124 | Msa0357110:CDS | 40.0% | |
| ACAATCCTCTTAAAGAGCTC+AGG | - | chr3_1:37859113-37859132 | None:intergenic | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | - | chr3_1:37859150-37859169 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | - | chr3_1:37859151-37859170 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | - | chr3_1:37859152-37859171 | None:intergenic | 40.0% |
| TAGTGTCAACGTGTTAGTGA+CGG | - | chr3_1:37859348-37859367 | None:intergenic | 40.0% | |
| CATGTGTTACCGACATATGT+CGG | + | chr3_1:37859411-37859430 | Msa0357110:intron | 40.0% | |
| ! | GAGAGAGGCTACTTTAAAGA+TGG | - | chr3_1:37859590-37859609 | None:intergenic | 40.0% |
| GTGCACTTCTTTATGTGTTG+TGG | - | chr3_1:37859631-37859650 | None:intergenic | 40.0% | |
| GCTTTCGTATTGAGACTCTA+TGG | - | chr3_1:37859866-37859885 | None:intergenic | 40.0% | |
| TAGAGTCTCAATACGAAAGC+TGG | + | chr3_1:37859866-37859885 | Msa0357110:CDS | 40.0% | |
| AGAGTCTCAATACGAAAGCT+GGG | + | chr3_1:37859867-37859886 | Msa0357110:CDS | 40.0% | |
| TCATTTGGATCCACTGCAAT+AGG | - | chr3_1:37859907-37859926 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | + | chr3_1:37859972-37859991 | Msa0357110:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | - | chr3_1:37859992-37860011 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | - | chr3_1:37860050-37860069 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | - | chr3_1:37860051-37860070 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | - | chr3_1:37860052-37860071 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | + | chr3_1:37860079-37860098 | Msa0357110:CDS | 40.0% | |
| TTAGGTGTGCAGTTAACTGA+GGG | - | chr3_1:37860170-37860189 | None:intergenic | 40.0% | |
| AATGCAAGAACCATAGGCTC+AGG | + | chr3_1:37858807-37858826 | Msa0357110:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | - | chr3_1:37859099-37859118 | None:intergenic | 45.0% |
| TTCTTCTTTGTGCTTCCCCA+AGG | + | chr3_1:37859132-37859151 | Msa0357110:CDS | 45.0% | |
| GTCTGATGTCCGACATATGT+CGG | - | chr3_1:37859423-37859442 | None:intergenic | 45.0% | |
| ! | ACGCTTTCCATCAGAAGTGT+CGG | + | chr3_1:37859443-37859462 | Msa0357110:intron | 45.0% |
| !! | GTGTCGGTGCTACAAAGATT+TGG | + | chr3_1:37859459-37859478 | Msa0357110:intron | 45.0% |
| ! | TGTTTGAATTGGCCTAGGCT+AGG | - | chr3_1:37859711-37859730 | None:intergenic | 45.0% |
| GAAAGCTGGGTTTCAGCATA+CGG | + | chr3_1:37859880-37859899 | Msa0357110:CDS | 45.0% | |
| GTGGCAGTTCCAATAAGCAT+AGG | + | chr3_1:37860078-37860097 | Msa0357110:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | - | chr3_1:37860164-37860183 | None:intergenic | 45.0% | |
| CTTAGGTGTGCAGTTAACTG+AGG | - | chr3_1:37860171-37860190 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTA+AGG | + | chr3_1:37860169-37860188 | Msa0357110:CDS | 45.0% | |
| GTTAACTGCACACCTAAGGT+TGG | + | chr3_1:37860173-37860192 | Msa0357110:CDS | 45.0% | |
| AATGCAAGAACCATAGGCTC+AGG | + | chr3_1:37858807-37858826 | Msa0357110:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | - | chr3_1:37859099-37859118 | None:intergenic | 45.0% |
| TTCTTCTTTGTGCTTCCCCA+AGG | + | chr3_1:37859132-37859151 | Msa0357110:CDS | 45.0% | |
| GTCTGATGTCCGACATATGT+CGG | - | chr3_1:37859423-37859442 | None:intergenic | 45.0% | |
| ! | ACGCTTTCCATCAGAAGTGT+CGG | + | chr3_1:37859443-37859462 | Msa0357110:intron | 45.0% |
| !! | GTGTCGGTGCTACAAAGATT+TGG | + | chr3_1:37859459-37859478 | Msa0357110:intron | 45.0% |
| ! | TGTTTGAATTGGCCTAGGCT+AGG | - | chr3_1:37859711-37859730 | None:intergenic | 45.0% |
| GAAAGCTGGGTTTCAGCATA+CGG | + | chr3_1:37859880-37859899 | Msa0357110:CDS | 45.0% | |
| GTGGCAGTTCCAATAAGCAT+AGG | + | chr3_1:37860078-37860097 | Msa0357110:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | - | chr3_1:37860164-37860183 | None:intergenic | 45.0% | |
| CTTAGGTGTGCAGTTAACTG+AGG | - | chr3_1:37860171-37860190 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTA+AGG | + | chr3_1:37860169-37860188 | Msa0357110:CDS | 45.0% | |
| GTTAACTGCACACCTAAGGT+TGG | + | chr3_1:37860173-37860192 | Msa0357110:CDS | 45.0% | |
| !! | TGTAGCACCGACACTTCTGA+TGG | - | chr3_1:37859453-37859472 | None:intergenic | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | + | chr3_1:37859894-37859913 | Msa0357110:CDS | 50.0% | |
| ! | TGCACACCTAAGGTTGGTTG+AGG | + | chr3_1:37860179-37860198 | Msa0357110:CDS | 50.0% |
| TCAGCACCTCAACCAACCTT+AGG | - | chr3_1:37860188-37860207 | None:intergenic | 50.0% | |
| !! | AAGGTTGGTTGAGGTGCTGA+AGG | + | chr3_1:37860188-37860207 | Msa0357110:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | + | chr3_1:37860189-37860208 | Msa0357110:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | + | chr3_1:37860197-37860216 | Msa0357110:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | + | chr3_1:37860198-37860217 | Msa0357110:CDS | 50.0% |
| !! | TGTAGCACCGACACTTCTGA+TGG | - | chr3_1:37859453-37859472 | None:intergenic | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | + | chr3_1:37859894-37859913 | Msa0357110:CDS | 50.0% | |
| ! | TGCACACCTAAGGTTGGTTG+AGG | + | chr3_1:37860179-37860198 | Msa0357110:CDS | 50.0% |
| TCAGCACCTCAACCAACCTT+AGG | - | chr3_1:37860188-37860207 | None:intergenic | 50.0% | |
| !! | AAGGTTGGTTGAGGTGCTGA+AGG | + | chr3_1:37860188-37860207 | Msa0357110:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | + | chr3_1:37860189-37860208 | Msa0357110:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | + | chr3_1:37860197-37860216 | Msa0357110:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | + | chr3_1:37860198-37860217 | Msa0357110:CDS | 50.0% |
| ! | TGTTTCGGGTCCTGAGCCTA+TGG | - | chr3_1:37858820-37858839 | None:intergenic | 55.0% |
| ! | TGTTTCGGGTCCTGAGCCTA+TGG | - | chr3_1:37858820-37858839 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 37858771 | 37860224 | 37858771 | ID=Msa0357110;Name=Msa0357110 |
| chr3_1 | mRNA | 37858771 | 37860224 | 37858771 | ID=Msa0357110-mRNA-1;Parent=Msa0357110;Name=Msa0357110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|269 |
| chr3_1 | exon | 37858771 | 37859153 | 37858771 | ID=Msa0357110-mRNA-1:exon:6891;Parent=Msa0357110-mRNA-1 |
| chr3_1 | exon | 37859798 | 37860224 | 37859798 | ID=Msa0357110-mRNA-1:exon:6892;Parent=Msa0357110-mRNA-1 |
| chr3_1 | CDS | 37858771 | 37859153 | 37858771 | ID=Msa0357110-mRNA-1:cds;Parent=Msa0357110-mRNA-1 |
| chr3_1 | CDS | 37859798 | 37860224 | 37859798 | ID=Msa0357110-mRNA-1:cds;Parent=Msa0357110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
