Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357010 | XP_013459502.1 | 95.911 | 269 | 11 | 0 | 1 | 269 | 1 | 269 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357010 | sp|J9U5U9|DAD2_PETHY | 38.846 | 260 | 158 | 1 | 6 | 265 | 3 | 261 | 7.40e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357010 | A0A072UWT8 | 95.911 | 269 | 11 | 0 | 1 | 269 | 1 | 269 | 0.0 | 538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0121470 | Msa0357010 | 0.818183 | 2.238464e-52 | -8.615850e-47 |
| Msa0121490 | Msa0357010 | 0.819699 | 1.012606e-52 | -8.615850e-47 |
| Msa0357010 | Msa0357110 | 0.832725 | 8.022412e-56 | -8.615850e-47 |
| Msa0357010 | Msa0655430 | 0.802727 | 4.891022e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357010 | MtrunA17_Chr3g0093821 | 95.911 | 269 | 11 | 0 | 1 | 269 | 1 | 269 | 0.0 | 538 |
| Msa0357010 | MtrunA17_Chr6g0485021 | 63.498 | 263 | 95 | 1 | 8 | 269 | 17 | 279 | 1.32e-124 | 356 |
| Msa0357010 | MtrunA17_Chr1g0152551 | 38.077 | 260 | 159 | 2 | 7 | 265 | 5 | 263 | 2.78e-73 | 225 |
| Msa0357010 | MtrunA17_Chr5g0401521 | 39.184 | 245 | 147 | 2 | 13 | 256 | 9 | 252 | 4.42e-68 | 213 |
| Msa0357010 | MtrunA17_Chr4g0053741 | 39.286 | 196 | 118 | 1 | 62 | 256 | 6 | 201 | 2.43e-52 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357010 | AT3G24420.1 | 49.815 | 271 | 133 | 2 | 1 | 268 | 1 | 271 | 1.23e-103 | 303 |
| Msa0357010 | AT3G03990.1 | 39.080 | 261 | 158 | 1 | 5 | 265 | 3 | 262 | 1.79e-75 | 231 |
| Msa0357010 | AT4G37470.1 | 41.633 | 245 | 141 | 2 | 13 | 256 | 9 | 252 | 2.09e-70 | 218 |
Find 53 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGTCTCAATACGAAATT+TGG | 0.108860 | 3_1:-37397720 | Msa0357010:CDS |
| AAGTAATGCCCTATGCTTAT+TGG | 0.241237 | 3_1:+37397499 | None:intergenic |
| TGACATAAAACTATTGTTTC+GGG | 0.281340 | 3_1:+37398784 | None:intergenic |
| TACTTGGATGAGAACATTAA+AGG | 0.285814 | 3_1:-37397481 | Msa0357010:CDS |
| ATGACATAAAACTATTGTTT+CGG | 0.322926 | 3_1:+37398783 | None:intergenic |
| AATTTCGTATTGAGACTCTA+TGG | 0.334575 | 3_1:+37397723 | None:intergenic |
| TTGGAACAGACCAGTCTATA+TGG | 0.354404 | 3_1:-37398756 | Msa0357010:CDS |
| TCAATAGAGTCAGCATCATT+TGG | 0.360021 | 3_1:+37397667 | None:intergenic |
| ACAGTCTAGTTCTGTTTGAT+TGG | 0.364702 | 3_1:-37398702 | Msa0357010:CDS |
| TGATGAGTTAATCACTCTTA+TGG | 0.373825 | 3_1:-37398608 | Msa0357010:CDS |
| TGAGGTGCTGAAGGGTATTG+TGG | 0.383521 | 3_1:-37397389 | Msa0357010:CDS |
| AATAAGCATAGGGCATTACT+TGG | 0.397845 | 3_1:-37397497 | Msa0357010:CDS |
| TCTGTAATAGCTCCAGAAAA+TGG | 0.417553 | 3_1:+37398679 | None:intergenic |
| TCATTTGGATCCACTGCAAT+AGG | 0.424577 | 3_1:+37397682 | None:intergenic |
| AAAAGCCTGAGCTCTTTAAG+AGG | 0.425563 | 3_1:-37398510 | Msa0357010:CDS |
| CTCATCAGCATAAGGTTCAT+AGG | 0.436848 | 3_1:+37398624 | None:intergenic |
| AGAGTCTCAATACGAAATTT+GGG | 0.437355 | 3_1:-37397719 | Msa0357010:CDS |
| ACTTGGATGAGAACATTAAA+GGG | 0.437938 | 3_1:-37397480 | Msa0357010:CDS |
| GAGGTGCTGAAGGGTATTGT+GGG | 0.441840 | 3_1:-37397388 | Msa0357010:CDS |
| CTATAGAGATATAGTTGAAA+AGG | 0.445888 | 3_1:-37397569 | Msa0357010:CDS |
| CATTAAAGGGATGTCTACTT+TGG | 0.446680 | 3_1:-37397467 | Msa0357010:CDS |
| ATAAATACAGATGACTATAA+AGG | 0.458026 | 3_1:-37397784 | Msa0357010:CDS |
| TGTTTCGGGTCCTGTGCCTA+TGG | 0.460018 | 3_1:+37398798 | None:intergenic |
| ACAATCCTCTTAAAGAGCTC+AGG | 0.466269 | 3_1:+37398505 | None:intergenic |
| CACTCTATGTCTGCTATGAT+AGG | 0.473029 | 3_1:-37398550 | Msa0357010:CDS |
| TTCTTCTTTGTGCTTCCCCA+AGG | 0.483467 | 3_1:-37398483 | Msa0357010:intron |
| GAAATTTGGGTTTCAGCATA+CGG | 0.491035 | 3_1:-37397706 | Msa0357010:CDS |
| GTGATTAACTCATCAGCATA+AGG | 0.495421 | 3_1:+37398616 | None:intergenic |
| AATCACTCTTATGGATGAGT+TGG | 0.497837 | 3_1:-37398599 | Msa0357010:CDS |
| CTCAGTTAACTGCACACCTA+AGG | 0.500170 | 3_1:-37397417 | Msa0357010:CDS |
| GTGCAGTTAACTGAGGGAAA+TGG | 0.509673 | 3_1:+37397425 | None:intergenic |
| TCAGCACCTCAACCAACCTT+AGG | 0.510018 | 3_1:+37397401 | None:intergenic |
| TTGGAGTTTATAGATATGAC+TGG | 0.515619 | 3_1:-37397448 | Msa0357010:CDS |
| AAGGTTGGTTGAGGTGCTGA+AGG | 0.529671 | 3_1:-37397398 | Msa0357010:CDS |
| GTGGCAGTTCCAATAAGCAT+AGG | 0.560917 | 3_1:-37397508 | Msa0357010:CDS |
| ACTTGACTGAATGATTGTGC+AGG | 0.563263 | 3_1:+37397537 | None:intergenic |
| AGCATACGGTCCTATTGCAG+TGG | 0.564652 | 3_1:-37397692 | Msa0357010:CDS |
| TCTTTAAATGCAAGAACCAT+AGG | 0.567918 | 3_1:-37398814 | Msa0357010:CDS |
| TTGCATTTAAAGATGTTGAG+AGG | 0.576785 | 3_1:+37398824 | None:intergenic |
| TGCACACCTAAGGTTGGTTG+AGG | 0.583937 | 3_1:-37397407 | Msa0357010:CDS |
| TGGCAGTTCCAATAAGCATA+GGG | 0.586920 | 3_1:-37397507 | Msa0357010:CDS |
| GTTAACTGCACACCTAAGGT+TGG | 0.590880 | 3_1:-37397413 | Msa0357010:CDS |
| CTTGACTGAATGATTGTGCA+GGG | 0.604202 | 3_1:+37397538 | None:intergenic |
| AATGCAAGAACCATAGGCAC+AGG | 0.616293 | 3_1:-37398808 | Msa0357010:CDS |
| AATACAGATGACTATAAAGG+AGG | 0.635005 | 3_1:-37397781 | Msa0357010:CDS |
| CATTCAGTCAAGTAATGATG+TGG | 0.635222 | 3_1:-37397527 | Msa0357010:CDS |
| TGGTGAAGTTGCAATTACCT+TGG | 0.640152 | 3_1:-37397614 | Msa0357010:CDS |
| CTTAGGTGTGCAGTTAACTG+AGG | 0.642434 | 3_1:+37397418 | None:intergenic |
| AGGTTGGTTGAGGTGCTGAA+GGG | 0.645453 | 3_1:-37397397 | Msa0357010:CDS |
| TTAGGTGTGCAGTTAACTGA+GGG | 0.650507 | 3_1:+37397419 | None:intergenic |
| CAACAAAAGTGATACATGTG+AGG | 0.685678 | 3_1:+37398575 | None:intergenic |
| AAATGCTTGAAAAGAATGGG+TGG | 0.686067 | 3_1:-37397634 | Msa0357010:CDS |
| TTGACTGAATGATTGTGCAG+GGG | 0.705699 | 3_1:+37397539 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTTTTAATTATGTTAT+TGG | - | chr3_1:37398065-37398084 | Msa0357010:intron | 10.0% |
| !! | AAAACTATAAATGTTAAAAA+GGG | - | chr3_1:37398224-37398243 | Msa0357010:intron | 10.0% |
| !!! | TAACTTTTTAATTATGTTAT+TGG | - | chr3_1:37398065-37398084 | Msa0357010:intron | 10.0% |
| !! | AAAACTATAAATGTTAAAAA+GGG | - | chr3_1:37398224-37398243 | Msa0357010:intron | 10.0% |
| !!! | TATATTTTGCATGATTATAA+AGG | + | chr3_1:37397581-37397600 | None:intergenic | 15.0% |
| !!! | TTTTAACATTTATAGTTTTG+TGG | + | chr3_1:37398223-37398242 | None:intergenic | 15.0% |
| !! | CAAAACTATAAATGTTAAAA+AGG | - | chr3_1:37398223-37398242 | Msa0357010:intron | 15.0% |
| !!! | TATATTTTGCATGATTATAA+AGG | + | chr3_1:37397581-37397600 | None:intergenic | 15.0% |
| !!! | TTTTAACATTTATAGTTTTG+TGG | + | chr3_1:37398223-37398242 | None:intergenic | 15.0% |
| !! | CAAAACTATAAATGTTAAAA+AGG | - | chr3_1:37398223-37398242 | Msa0357010:intron | 15.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | + | chr3_1:37397448-37397467 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | - | chr3_1:37397448-37397467 | Msa0357010:CDS | 20.0% |
| !! | GTTAAAAACACTTGATTATT+TGG | - | chr3_1:37397863-37397882 | Msa0357010:intron | 20.0% |
| !! | CATTAGTTATTGACAAAAAT+TGG | + | chr3_1:37398104-37398123 | None:intergenic | 20.0% |
| !!! | AAATTTTACATCACACTAAT+TGG | + | chr3_1:37398270-37398289 | None:intergenic | 20.0% |
| !! | ACCTATGAATGAATAATTAT+GGG | + | chr3_1:37398422-37398441 | None:intergenic | 20.0% |
| !! | TACCTATGAATGAATAATTA+TGG | + | chr3_1:37398423-37398442 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | - | chr3_1:37398444-37398463 | Msa0357010:intron | 20.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | + | chr3_1:37397448-37397467 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | - | chr3_1:37397448-37397467 | Msa0357010:CDS | 20.0% |
| !! | GTTAAAAACACTTGATTATT+TGG | - | chr3_1:37397863-37397882 | Msa0357010:intron | 20.0% |
| !! | CATTAGTTATTGACAAAAAT+TGG | + | chr3_1:37398104-37398123 | None:intergenic | 20.0% |
| !!! | AAATTTTACATCACACTAAT+TGG | + | chr3_1:37398270-37398289 | None:intergenic | 20.0% |
| !! | ACCTATGAATGAATAATTAT+GGG | + | chr3_1:37398422-37398441 | None:intergenic | 20.0% |
| !! | TACCTATGAATGAATAATTA+TGG | + | chr3_1:37398423-37398442 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | - | chr3_1:37398444-37398463 | Msa0357010:intron | 20.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | + | chr3_1:37397447-37397466 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | - | chr3_1:37397447-37397466 | Msa0357010:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | + | chr3_1:37397485-37397504 | None:intergenic | 25.0% |
| !! | CTGTAATTTTCAGTTAAAAG+AGG | + | chr3_1:37397510-37397529 | None:intergenic | 25.0% |
| ! | GAAATCTCATATTGTGTATT+TGG | - | chr3_1:37397887-37397906 | Msa0357010:intron | 25.0% |
| !! | TTTCAAATTTTTACCTGTGT+CGG | + | chr3_1:37397925-37397944 | None:intergenic | 25.0% |
| ! | TAGTTATTGACAAAAATTGG+TGG | + | chr3_1:37398101-37398120 | None:intergenic | 25.0% |
| !!! | AACATTTATAGTTTTGTGGA+AGG | + | chr3_1:37398219-37398238 | None:intergenic | 25.0% |
| ! | TCCCATAATTATTCATTCAT+AGG | - | chr3_1:37398418-37398437 | Msa0357010:intron | 25.0% |
| ! | TCAAAAATGCTTGAAAAGAA+TGG | - | chr3_1:37398590-37398609 | Msa0357010:CDS | 25.0% |
| ! | CAAAAATGCTTGAAAAGAAT+GGG | - | chr3_1:37398591-37398610 | Msa0357010:CDS | 25.0% |
| ! | CTATAGAGATATAGTTGAAA+AGG | - | chr3_1:37398659-37398678 | Msa0357010:CDS | 25.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | + | chr3_1:37397447-37397466 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | - | chr3_1:37397447-37397466 | Msa0357010:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | + | chr3_1:37397485-37397504 | None:intergenic | 25.0% |
| !! | CTGTAATTTTCAGTTAAAAG+AGG | + | chr3_1:37397510-37397529 | None:intergenic | 25.0% |
| ! | GAAATCTCATATTGTGTATT+TGG | - | chr3_1:37397887-37397906 | Msa0357010:intron | 25.0% |
| !! | TTTCAAATTTTTACCTGTGT+CGG | + | chr3_1:37397925-37397944 | None:intergenic | 25.0% |
| ! | TAGTTATTGACAAAAATTGG+TGG | + | chr3_1:37398101-37398120 | None:intergenic | 25.0% |
| !!! | AACATTTATAGTTTTGTGGA+AGG | + | chr3_1:37398219-37398238 | None:intergenic | 25.0% |
| ! | TCCCATAATTATTCATTCAT+AGG | - | chr3_1:37398418-37398437 | Msa0357010:intron | 25.0% |
| ! | TCAAAAATGCTTGAAAAGAA+TGG | - | chr3_1:37398590-37398609 | Msa0357010:CDS | 25.0% |
| ! | CAAAAATGCTTGAAAAGAAT+GGG | - | chr3_1:37398591-37398610 | Msa0357010:CDS | 25.0% |
| ! | CTATAGAGATATAGTTGAAA+AGG | - | chr3_1:37398659-37398678 | Msa0357010:CDS | 25.0% |
| TTGCATTTAAAGATGTTGAG+AGG | + | chr3_1:37397407-37397426 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | - | chr3_1:37397414-37397433 | Msa0357010:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | - | chr3_1:37397453-37397472 | Msa0357010:CDS | 30.0% |
| TGATGAGTTAATCACTCTTA+TGG | - | chr3_1:37397620-37397639 | Msa0357010:CDS | 30.0% | |
| AGTCACTAACCATCTTAAAA+TGG | - | chr3_1:37398136-37398155 | Msa0357010:intron | 30.0% | |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | + | chr3_1:37398208-37398227 | None:intergenic | 30.0% |
| !!! | GTTTTTCAAGAGCTCAAATT+TGG | + | chr3_1:37398305-37398324 | None:intergenic | 30.0% |
| CCAAAAATTGAGCTCAAATA+TGG | + | chr3_1:37398327-37398346 | None:intergenic | 30.0% | |
| ! | CCATATTTGAGCTCAATTTT+TGG | - | chr3_1:37398324-37398343 | Msa0357010:intron | 30.0% |
| GATGTTAATACAAGACACTA+TGG | + | chr3_1:37398400-37398419 | None:intergenic | 30.0% | |
| AATACAGATGACTATAAAGG+AGG | - | chr3_1:37398447-37398466 | Msa0357010:intron | 30.0% | |
| AATTTCGTATTGAGACTCTA+TGG | + | chr3_1:37398508-37398527 | None:intergenic | 30.0% | |
| TAGAGTCTCAATACGAAATT+TGG | - | chr3_1:37398508-37398527 | Msa0357010:CDS | 30.0% | |
| AGAGTCTCAATACGAAATTT+GGG | - | chr3_1:37398509-37398528 | Msa0357010:CDS | 30.0% | |
| TACTTGGATGAGAACATTAA+AGG | - | chr3_1:37398747-37398766 | Msa0357010:CDS | 30.0% | |
| ACTTGGATGAGAACATTAAA+GGG | - | chr3_1:37398748-37398767 | Msa0357010:CDS | 30.0% | |
| TTGGAGTTTATAGATATGAC+TGG | - | chr3_1:37398780-37398799 | Msa0357010:CDS | 30.0% | |
| TTGCATTTAAAGATGTTGAG+AGG | + | chr3_1:37397407-37397426 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | - | chr3_1:37397414-37397433 | Msa0357010:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | - | chr3_1:37397453-37397472 | Msa0357010:CDS | 30.0% |
| TGATGAGTTAATCACTCTTA+TGG | - | chr3_1:37397620-37397639 | Msa0357010:CDS | 30.0% | |
| AGTCACTAACCATCTTAAAA+TGG | - | chr3_1:37398136-37398155 | Msa0357010:intron | 30.0% | |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | + | chr3_1:37398208-37398227 | None:intergenic | 30.0% |
| !!! | GTTTTTCAAGAGCTCAAATT+TGG | + | chr3_1:37398305-37398324 | None:intergenic | 30.0% |
| CCAAAAATTGAGCTCAAATA+TGG | + | chr3_1:37398327-37398346 | None:intergenic | 30.0% | |
| ! | CCATATTTGAGCTCAATTTT+TGG | - | chr3_1:37398324-37398343 | Msa0357010:intron | 30.0% |
| GATGTTAATACAAGACACTA+TGG | + | chr3_1:37398400-37398419 | None:intergenic | 30.0% | |
| AATACAGATGACTATAAAGG+AGG | - | chr3_1:37398447-37398466 | Msa0357010:intron | 30.0% | |
| AATTTCGTATTGAGACTCTA+TGG | + | chr3_1:37398508-37398527 | None:intergenic | 30.0% | |
| TAGAGTCTCAATACGAAATT+TGG | - | chr3_1:37398508-37398527 | Msa0357010:CDS | 30.0% | |
| AGAGTCTCAATACGAAATTT+GGG | - | chr3_1:37398509-37398528 | Msa0357010:CDS | 30.0% | |
| TACTTGGATGAGAACATTAA+AGG | - | chr3_1:37398747-37398766 | Msa0357010:CDS | 30.0% | |
| ACTTGGATGAGAACATTAAA+GGG | - | chr3_1:37398748-37398767 | Msa0357010:CDS | 30.0% | |
| TTGGAGTTTATAGATATGAC+TGG | - | chr3_1:37398780-37398799 | Msa0357010:CDS | 30.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | - | chr3_1:37397526-37397545 | Msa0357010:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | + | chr3_1:37397552-37397571 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | + | chr3_1:37397615-37397634 | None:intergenic | 35.0% | |
| AATCACTCTTATGGATGAGT+TGG | - | chr3_1:37397629-37397648 | Msa0357010:CDS | 35.0% | |
| CAACAAAAGTGATACATGTG+AGG | + | chr3_1:37397656-37397675 | None:intergenic | 35.0% | |
| !! | CTCACATGTATCACTTTTGT+TGG | - | chr3_1:37397654-37397673 | Msa0357010:CDS | 35.0% |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | + | chr3_1:37397715-37397734 | None:intergenic | 35.0% |
| ! | ACATCAGAGAGAGTATATCT+AGG | + | chr3_1:37397785-37397804 | None:intergenic | 35.0% |
| ! | GATAGAAAAGCATAGTTGTG+AGG | + | chr3_1:37398167-37398186 | None:intergenic | 35.0% |
| TAGGTACACTTCTTTATGTG+TGG | + | chr3_1:37398189-37398208 | None:intergenic | 35.0% | |
| TTGGAAGTGATTTATCGAGT+TGG | + | chr3_1:37398251-37398270 | None:intergenic | 35.0% | |
| TGGTTAGTGCAATCCAAATT+TGG | + | chr3_1:37398380-37398399 | None:intergenic | 35.0% | |
| ! | GAAATTTGGGTTTCAGCATA+CGG | - | chr3_1:37398522-37398541 | Msa0357010:CDS | 35.0% |
| TCAATAGAGTCAGCATCATT+TGG | + | chr3_1:37398564-37398583 | None:intergenic | 35.0% | |
| AAATGCTTGAAAAGAATGGG+TGG | - | chr3_1:37398594-37398613 | Msa0357010:CDS | 35.0% | |
| ! | GTCACTGAAAAACACAGTTT+TGG | + | chr3_1:37398640-37398659 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | - | chr3_1:37398701-37398720 | Msa0357010:CDS | 35.0% | |
| AAGTAATGCCCTATGCTTAT+TGG | + | chr3_1:37398732-37398751 | None:intergenic | 35.0% | |
| ! | AATAAGCATAGGGCATTACT+TGG | - | chr3_1:37398731-37398750 | Msa0357010:CDS | 35.0% |
| CATTAAAGGGATGTCTACTT+TGG | - | chr3_1:37398761-37398780 | Msa0357010:CDS | 35.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | - | chr3_1:37397526-37397545 | Msa0357010:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | + | chr3_1:37397552-37397571 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | + | chr3_1:37397615-37397634 | None:intergenic | 35.0% | |
| AATCACTCTTATGGATGAGT+TGG | - | chr3_1:37397629-37397648 | Msa0357010:CDS | 35.0% | |
| CAACAAAAGTGATACATGTG+AGG | + | chr3_1:37397656-37397675 | None:intergenic | 35.0% | |
| !! | CTCACATGTATCACTTTTGT+TGG | - | chr3_1:37397654-37397673 | Msa0357010:CDS | 35.0% |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | + | chr3_1:37397715-37397734 | None:intergenic | 35.0% |
| ! | ACATCAGAGAGAGTATATCT+AGG | + | chr3_1:37397785-37397804 | None:intergenic | 35.0% |
| ! | GATAGAAAAGCATAGTTGTG+AGG | + | chr3_1:37398167-37398186 | None:intergenic | 35.0% |
| TAGGTACACTTCTTTATGTG+TGG | + | chr3_1:37398189-37398208 | None:intergenic | 35.0% | |
| TTGGAAGTGATTTATCGAGT+TGG | + | chr3_1:37398251-37398270 | None:intergenic | 35.0% | |
| TGGTTAGTGCAATCCAAATT+TGG | + | chr3_1:37398380-37398399 | None:intergenic | 35.0% | |
| ! | GAAATTTGGGTTTCAGCATA+CGG | - | chr3_1:37398522-37398541 | Msa0357010:CDS | 35.0% |
| TCAATAGAGTCAGCATCATT+TGG | + | chr3_1:37398564-37398583 | None:intergenic | 35.0% | |
| AAATGCTTGAAAAGAATGGG+TGG | - | chr3_1:37398594-37398613 | Msa0357010:CDS | 35.0% | |
| ! | GTCACTGAAAAACACAGTTT+TGG | + | chr3_1:37398640-37398659 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | - | chr3_1:37398701-37398720 | Msa0357010:CDS | 35.0% | |
| AAGTAATGCCCTATGCTTAT+TGG | + | chr3_1:37398732-37398751 | None:intergenic | 35.0% | |
| ! | AATAAGCATAGGGCATTACT+TGG | - | chr3_1:37398731-37398750 | Msa0357010:CDS | 35.0% |
| CATTAAAGGGATGTCTACTT+TGG | - | chr3_1:37398761-37398780 | Msa0357010:CDS | 35.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | + | chr3_1:37397396-37397415 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | - | chr3_1:37397472-37397491 | Msa0357010:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | - | chr3_1:37397537-37397556 | Msa0357010:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | + | chr3_1:37397607-37397626 | None:intergenic | 40.0% | |
| CACTCTATGTCTGCTATGAT+AGG | - | chr3_1:37397678-37397697 | Msa0357010:CDS | 40.0% | |
| AAAAGCCTGAGCTCTTTAAG+AGG | - | chr3_1:37397718-37397737 | Msa0357010:CDS | 40.0% | |
| ACAATCCTCTTAAAGAGCTC+AGG | + | chr3_1:37397726-37397745 | None:intergenic | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | + | chr3_1:37397763-37397782 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | + | chr3_1:37397764-37397783 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | + | chr3_1:37397765-37397784 | None:intergenic | 40.0% |
| !! | GTGTCGGTGCTACAAAAATT+TGG | - | chr3_1:37398017-37398036 | Msa0357010:intron | 40.0% |
| !! | GAGGAGAGACCATTTTAAGA+TGG | + | chr3_1:37398148-37398167 | None:intergenic | 40.0% |
| TGGACATACCCAACCAAATT+TGG | - | chr3_1:37398344-37398363 | Msa0357010:intron | 40.0% | |
| ATACCCAACCAAATTTGGAG+TGG | - | chr3_1:37398349-37398368 | Msa0357010:intron | 40.0% | |
| AGTCCACTCCAAATTTGGTT+GGG | + | chr3_1:37398355-37398374 | None:intergenic | 40.0% | |
| TAGTCCACTCCAAATTTGGT+TGG | + | chr3_1:37398356-37398375 | None:intergenic | 40.0% | |
| ! | TGGTTAGTCCACTCCAAATT+TGG | + | chr3_1:37398360-37398379 | None:intergenic | 40.0% |
| !! | TGGAGTGGACTAACCAAATT+TGG | - | chr3_1:37398364-37398383 | Msa0357010:intron | 40.0% |
| TCATTTGGATCCACTGCAAT+AGG | + | chr3_1:37398549-37398568 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | - | chr3_1:37398614-37398633 | Msa0357010:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | + | chr3_1:37398634-37398653 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | + | chr3_1:37398692-37398711 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | + | chr3_1:37398693-37398712 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | + | chr3_1:37398694-37398713 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | - | chr3_1:37398721-37398740 | Msa0357010:CDS | 40.0% | |
| TTAGGTGTGCAGTTAACTGA+GGG | + | chr3_1:37398812-37398831 | None:intergenic | 40.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | + | chr3_1:37397396-37397415 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | - | chr3_1:37397472-37397491 | Msa0357010:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | - | chr3_1:37397537-37397556 | Msa0357010:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | + | chr3_1:37397607-37397626 | None:intergenic | 40.0% | |
| CACTCTATGTCTGCTATGAT+AGG | - | chr3_1:37397678-37397697 | Msa0357010:CDS | 40.0% | |
| AAAAGCCTGAGCTCTTTAAG+AGG | - | chr3_1:37397718-37397737 | Msa0357010:CDS | 40.0% | |
| ACAATCCTCTTAAAGAGCTC+AGG | + | chr3_1:37397726-37397745 | None:intergenic | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | + | chr3_1:37397763-37397782 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | + | chr3_1:37397764-37397783 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | + | chr3_1:37397765-37397784 | None:intergenic | 40.0% |
| !! | GTGTCGGTGCTACAAAAATT+TGG | - | chr3_1:37398017-37398036 | Msa0357010:intron | 40.0% |
| !! | GAGGAGAGACCATTTTAAGA+TGG | + | chr3_1:37398148-37398167 | None:intergenic | 40.0% |
| TGGACATACCCAACCAAATT+TGG | - | chr3_1:37398344-37398363 | Msa0357010:intron | 40.0% | |
| ATACCCAACCAAATTTGGAG+TGG | - | chr3_1:37398349-37398368 | Msa0357010:intron | 40.0% | |
| AGTCCACTCCAAATTTGGTT+GGG | + | chr3_1:37398355-37398374 | None:intergenic | 40.0% | |
| TAGTCCACTCCAAATTTGGT+TGG | + | chr3_1:37398356-37398375 | None:intergenic | 40.0% | |
| ! | TGGTTAGTCCACTCCAAATT+TGG | + | chr3_1:37398360-37398379 | None:intergenic | 40.0% |
| !! | TGGAGTGGACTAACCAAATT+TGG | - | chr3_1:37398364-37398383 | Msa0357010:intron | 40.0% |
| TCATTTGGATCCACTGCAAT+AGG | + | chr3_1:37398549-37398568 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | - | chr3_1:37398614-37398633 | Msa0357010:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | + | chr3_1:37398634-37398653 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | + | chr3_1:37398692-37398711 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | + | chr3_1:37398693-37398712 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | + | chr3_1:37398694-37398713 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | - | chr3_1:37398721-37398740 | Msa0357010:CDS | 40.0% | |
| TTAGGTGTGCAGTTAACTGA+GGG | + | chr3_1:37398812-37398831 | None:intergenic | 40.0% | |
| AATGCAAGAACCATAGGCAC+AGG | - | chr3_1:37397420-37397439 | Msa0357010:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | + | chr3_1:37397712-37397731 | None:intergenic | 45.0% |
| TTCTTCTTTGTGCTTCCCCA+AGG | - | chr3_1:37397745-37397764 | Msa0357010:CDS | 45.0% | |
| CATGTATCATCGACACGTGT+CGG | - | chr3_1:37397969-37397988 | Msa0357010:intron | 45.0% | |
| ! | ACGCTTTCCATCAGAAGTGT+CGG | - | chr3_1:37398001-37398020 | Msa0357010:intron | 45.0% |
| GTGGCAGTTCCAATAAGCAT+AGG | - | chr3_1:37398720-37398739 | Msa0357010:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | + | chr3_1:37398806-37398825 | None:intergenic | 45.0% | |
| CTTAGGTGTGCAGTTAACTG+AGG | + | chr3_1:37398813-37398832 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTA+AGG | - | chr3_1:37398811-37398830 | Msa0357010:CDS | 45.0% | |
| GTTAACTGCACACCTAAGGT+TGG | - | chr3_1:37398815-37398834 | Msa0357010:CDS | 45.0% | |
| AATGCAAGAACCATAGGCAC+AGG | - | chr3_1:37397420-37397439 | Msa0357010:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | + | chr3_1:37397712-37397731 | None:intergenic | 45.0% |
| TTCTTCTTTGTGCTTCCCCA+AGG | - | chr3_1:37397745-37397764 | Msa0357010:CDS | 45.0% | |
| CATGTATCATCGACACGTGT+CGG | - | chr3_1:37397969-37397988 | Msa0357010:intron | 45.0% | |
| ! | ACGCTTTCCATCAGAAGTGT+CGG | - | chr3_1:37398001-37398020 | Msa0357010:intron | 45.0% |
| GTGGCAGTTCCAATAAGCAT+AGG | - | chr3_1:37398720-37398739 | Msa0357010:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | + | chr3_1:37398806-37398825 | None:intergenic | 45.0% | |
| CTTAGGTGTGCAGTTAACTG+AGG | + | chr3_1:37398813-37398832 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTA+AGG | - | chr3_1:37398811-37398830 | Msa0357010:CDS | 45.0% | |
| GTTAACTGCACACCTAAGGT+TGG | - | chr3_1:37398815-37398834 | Msa0357010:CDS | 45.0% | |
| !! | GATCTCTGAAACACCGACAC+AGG | - | chr3_1:37397909-37397928 | Msa0357010:intron | 50.0% |
| ! | CTTCTGATGGAAAGCGTGTC+TGG | + | chr3_1:37397998-37398017 | None:intergenic | 50.0% |
| !! | TGTAGCACCGACACTTCTGA+TGG | + | chr3_1:37398011-37398030 | None:intergenic | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | - | chr3_1:37398536-37398555 | Msa0357010:CDS | 50.0% | |
| ! | TGCACACCTAAGGTTGGTTG+AGG | - | chr3_1:37398821-37398840 | Msa0357010:CDS | 50.0% |
| TCAGCACCTCAACCAACCTT+AGG | + | chr3_1:37398830-37398849 | None:intergenic | 50.0% | |
| !! | AAGGTTGGTTGAGGTGCTGA+AGG | - | chr3_1:37398830-37398849 | Msa0357010:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | - | chr3_1:37398831-37398850 | Msa0357010:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | - | chr3_1:37398839-37398858 | Msa0357010:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | - | chr3_1:37398840-37398859 | Msa0357010:CDS | 50.0% |
| !! | GATCTCTGAAACACCGACAC+AGG | - | chr3_1:37397909-37397928 | Msa0357010:intron | 50.0% |
| ! | CTTCTGATGGAAAGCGTGTC+TGG | + | chr3_1:37397998-37398017 | None:intergenic | 50.0% |
| !! | TGTAGCACCGACACTTCTGA+TGG | + | chr3_1:37398011-37398030 | None:intergenic | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | - | chr3_1:37398536-37398555 | Msa0357010:CDS | 50.0% | |
| ! | TGCACACCTAAGGTTGGTTG+AGG | - | chr3_1:37398821-37398840 | Msa0357010:CDS | 50.0% |
| TCAGCACCTCAACCAACCTT+AGG | + | chr3_1:37398830-37398849 | None:intergenic | 50.0% | |
| !! | AAGGTTGGTTGAGGTGCTGA+AGG | - | chr3_1:37398830-37398849 | Msa0357010:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | - | chr3_1:37398831-37398850 | Msa0357010:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | - | chr3_1:37398839-37398858 | Msa0357010:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | - | chr3_1:37398840-37398859 | Msa0357010:CDS | 50.0% |
| ! | TGTTTCGGGTCCTGTGCCTA+TGG | + | chr3_1:37397433-37397452 | None:intergenic | 55.0% |
| ! | TGTTTCGGGTCCTGTGCCTA+TGG | + | chr3_1:37397433-37397452 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 37397384 | 37398866 | 37397384 | ID=Msa0357010;Name=Msa0357010 |
| chr3_1 | mRNA | 37397384 | 37398866 | 37397384 | ID=Msa0357010-mRNA-1;Parent=Msa0357010;Name=Msa0357010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|269 |
| chr3_1 | exon | 37398484 | 37398866 | 37398484 | ID=Msa0357010-mRNA-1:exon:6839;Parent=Msa0357010-mRNA-1 |
| chr3_1 | exon | 37397384 | 37397810 | 37397384 | ID=Msa0357010-mRNA-1:exon:6838;Parent=Msa0357010-mRNA-1 |
| chr3_1 | CDS | 37398484 | 37398866 | 37398484 | ID=Msa0357010-mRNA-1:cds;Parent=Msa0357010-mRNA-1 |
| chr3_1 | CDS | 37397384 | 37397810 | 37397384 | ID=Msa0357010-mRNA-1:cds;Parent=Msa0357010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
