AlfalfaGEDB | Msa0361130

M. sativa cultivar zhongmu-4 / Msa0361130

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361130	AET04676.2	56.338	142	21	4	1	111	41	172	1.21e-34	128

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361130	G7LD37	56.338	142	21	4	1	111	41	172	5.77e-35	128

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0361130	Msa0361140	0.807543	4.800838e-50	-8.615850e-47
Msa0361130	Msa0559500	0.804362	2.240509e-49	-8.615850e-47
Msa0361130	Msa1022820	0.807887	4.057768e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 95 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGCTAGGTACTTTG+TGG	0.408513	3_1:-51341138	None:intergenic
AAACCTCACTGATATCATTT+TGG	0.206558	3_1:+51341770	Msa0361130:five_prime_UTR
AAAGGGTGATGGGATTATTG+TGG	0.583866	3_1:+51344116	Msa0361130:three_prime_UTR
AAATTGAAACCTGCTCAGCT+CGG	0.599524	3_1:-51341630	None:intergenic
AAGGACAATAAGTGTGCTGT+TGG	0.535488	3_1:-51344380	None:intergenic
AAGTGATTGTGTACATCTAA+AGG	0.527661	3_1:+51344098	Msa0361130:three_prime_UTR
AATACAGTATTGTATACTAA+TGG	0.410307	3_1:+51342102	Msa0361130:CDS
AATAGCTGCTGCCACACAGA+TGG	0.575125	3_1:+51341038	Msa0361130:five_prime_UTR
AATTGCAGGGTAATTTGGAA+TGG	0.457236	3_1:+51344074	Msa0361130:exon
ACCAAGTTTGGGAACAGTCC+TGG	0.463033	3_1:-51343896	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAACCATCAGAAAATTCTAA+AGG	+	chr3_1:51341187-51341206	Msa0361130:five_prime_UTR	30.0%
TATATAGTCCTCAAAACAGA+GGG	-	chr3_1:51341594-51341613	None:intergenic	30.0%
TTATATAGTCCTCAAAACAG+AGG	-	chr3_1:51341595-51341614	None:intergenic	30.0%
CACAAGTACATAATTCAAAG+AGG	-	chr3_1:51341989-51342008	None:intergenic	30.0%
TACCCTCTGTTATTGTTATA+GGG	+	chr3_1:51342014-51342033	Msa0361130:intron	30.0%
CATGTTTGTGAAATTGCATA+AGG	+	chr3_1:51342230-51342249	Msa0361130:intron	30.0%
ATAACACAAGATAGAAATCG+AGG	+	chr3_1:51343178-51343197	Msa0361130:intron	30.0%
AAACACCAATTTAGTGAGTT+TGG	+	chr3_1:51343409-51343428	Msa0361130:intron	30.0%
GAAAACCAAACTCACTAAAT+TGG	-	chr3_1:51343417-51343436	None:intergenic	30.0%
TATTGTATGAGTTGCAGATA+AGG	+	chr3_1:51343553-51343572	Msa0361130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	51340903	51344440	51340903	ID=Msa0361130;Name=Msa0361130
chr3_1	mRNA	51340903	51344440	51340903	ID=Msa0361130-mRNA-1;Parent=Msa0361130;Name=Msa0361130-mRNA-1;_AED=0.34;_eAED=0.34;_QI=926\|0.8\|1\|1\|0.6\|0.66\|6\|366\|129
chr3_1	exon	51340903	51341335	51340903	ID=Msa0361130-mRNA-1:exon:9132;Parent=Msa0361130-mRNA-1
chr3_1	exon	51341503	51341943	51341503	ID=Msa0361130-mRNA-1:exon:9133;Parent=Msa0361130-mRNA-1
chr3_1	exon	51342035	51342140	51342035	ID=Msa0361130-mRNA-1:exon:9134;Parent=Msa0361130-mRNA-1
chr3_1	exon	51342421	51342466	51342421	ID=Msa0361130-mRNA-1:exon:9135;Parent=Msa0361130-mRNA-1
chr3_1	exon	51343691	51343775	51343691	ID=Msa0361130-mRNA-1:exon:9136;Parent=Msa0361130-mRNA-1
chr3_1	exon	51343870	51344440	51343870	ID=Msa0361130-mRNA-1:exon:9137;Parent=Msa0361130-mRNA-1
chr3_1	five_prime_UTR	51340903	51341335	51340903	ID=Msa0361130-mRNA-1:five_prime_utr;Parent=Msa0361130-mRNA-1
chr3_1	five_prime_UTR	51341503	51341943	51341503	ID=Msa0361130-mRNA-1:five_prime_utr;Parent=Msa0361130-mRNA-1
chr3_1	five_prime_UTR	51342035	51342086	51342035	ID=Msa0361130-mRNA-1:five_prime_utr;Parent=Msa0361130-mRNA-1
chr3_1	CDS	51342087	51342140	51342087	ID=Msa0361130-mRNA-1:cds;Parent=Msa0361130-mRNA-1
chr3_1	CDS	51342421	51342466	51342421	ID=Msa0361130-mRNA-1:cds;Parent=Msa0361130-mRNA-1
chr3_1	CDS	51343691	51343775	51343691	ID=Msa0361130-mRNA-1:cds;Parent=Msa0361130-mRNA-1
chr3_1	CDS	51343870	51344074	51343870	ID=Msa0361130-mRNA-1:cds;Parent=Msa0361130-mRNA-1
chr3_1	three_prime_UTR	51344075	51344440	51344075	ID=Msa0361130-mRNA-1:three_prime_utr;Parent=Msa0361130-mRNA-1

Gene Sequence

>Msa0361130

ATGGAAAGTAATCTAAATACAGTATTGTATACTAATGGAGCTACTGTATTGCAGGTGGAGCAGTTCCTAAAAGCATTCAAGTTGAAGAATTTTTATTTAGATAAGGCATTTGTGCAGAATGCGATGAATATAACTAGGCTCTTGATCAATCCTGACATTCTACAGGCTCTTCAACTGAAGAATGGGGTGGGCTTTGATGGAGTTGAGACATCCAGGACTGTTCCCAAACTTGGTCCCCGTGTAAGGTTGTCTTTTGATGAAGTGTTTTTGCGATTGTATGCAAAGAAAACCATTGCTCAGCTGACTGATATAGCTGACGATGGAACTTTTATTGTAAGTGCAACTGATAATGAGAGTTATGAATATGACTGTGGTTGGGTGGTTGATTGA

Protein sequence

>Msa0361130

MESNLNTVLYTNGATVLQVEQFLKAFKLKNFYLDKAFVQNAMNITRLLINPDILQALQLKNGVGFDGVETSRTVPKLGPRVRLSFDEVFLRLYAKKTIAQLTDIADDGTFIVSATDNESYEYDCGWVVD*