AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0362000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362000 MtrunA17_Chr3g0101021 94.253 174 10 0 6 179 935 1108 7.43e-109 335
Msa0362000 MtrunA17_Chr5g0445211 74.138 174 45 0 6 179 988 1161 9.63e-74 239
Msa0362000 MtrunA17_Chr3g0122121 35.802 162 97 2 6 160 1056 1217 8.73e-26 103
Msa0362000 MtrunA17_Chr8g0377731 35.802 162 97 3 6 160 969 1130 4.56e-23 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362000 AT4G26660.1 56.522 184 70 4 6 179 622 805 5.62e-55 186
Msa0362000 AT5G55520.1 55.914 186 69 3 6 178 616 801 8.62e-50 171
Msa0362000 AT5G55520.2 55.914 186 69 3 6 178 612 797 1.05e-49 171
Msa0362000 AT3G20150.1 62.069 145 54 1 6 149 963 1107 1.00e-31 120
Msa0362000 AT3G23670.2 41.040 173 98 3 6 176 779 949 4.20e-31 119
Msa0362000 AT3G23670.1 41.040 173 98 3 6 176 1121 1291 6.27e-31 118
Msa0362000 AT4G14150.1 37.989 179 89 3 6 176 1106 1270 1.14e-25 103
Msa0362000 AT3G20150.2 70.213 94 27 1 6 98 963 1056 1.37e-24 100

Find 348 sgRNAs with CRISPR-Local

Find 519 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATAATATTCCTAAGAATT+TGG 0.085165 3_1:-52763401 Msa0362000:five_prime_UTR
GGTTCAACCTTGTCGATTTC+TGG 0.100131 3_1:+52759736 None:intergenic
AGCTTGAAGTTCTCTATATT+TGG 0.125623 3_1:-52762568 Msa0362000:five_prime_UTR
CAACCATTGACGATGCTTTA+TGG 0.155245 3_1:-52763552 Msa0362000:five_prime_UTR
TGGGGTGTGGAAGATGAATT+TGG 0.157886 3_1:-52762548 Msa0362000:five_prime_UTR
TTTCTCAATAAATAAATAAA+AGG 0.162969 3_1:-52762186 Msa0362000:five_prime_UTR
AAGCCATGCTTCTTGTATTT+TGG 0.165819 3_1:-52763883 Msa0362000:five_prime_UTR
TGGATTCAAGTTCAAGTTTA+AGG 0.170688 3_1:+52765078 None:intergenic
TACTCCAGTAATTACTAAAT+TGG 0.174122 3_1:+52757897 None:intergenic
TGGAGCATGCCAATCGATTT+AGG 0.177913 3_1:+52763319 None:intergenic
TCACCGACAGAAATGTATTT+TGG 0.179040 3_1:+52760183 None:intergenic
ACTGTTATTGATTTATTTAA+AGG 0.187038 3_1:-52763200 Msa0362000:five_prime_UTR
AAAGACTGTTCATGAGTTAA+TGG 0.204513 3_1:+52764177 None:intergenic
TTTCTGAGAGTTCAACTTTC+GGG 0.228286 3_1:-52759948 Msa0362000:five_prime_UTR
CTTAGAGATTCCTTTAAAAT+AGG 0.230041 3_1:+52763465 None:intergenic
AAGACAGATTCACATCTAAT+TGG 0.232092 3_1:-52763955 Msa0362000:five_prime_UTR
AGCTGACTTTCAACTGATTA+AGG 0.233603 3_1:+52760331 None:intergenic
ATGAAATTTCCCAAATTCTT+AGG 0.236391 3_1:+52763391 None:intergenic
CAGTTTGCACACTCAGATTT+GGG 0.248996 3_1:-52760609 Msa0362000:five_prime_UTR
GATTTAACTTCATAATCTTC+TGG 0.249956 3_1:+52763853 None:intergenic
CCCACAAACAGATGACTTAA+TGG 0.251283 3_1:+52764821 None:intergenic
CTCTCTGATCTAACTCTTCT+AGG 0.251304 3_1:+52759082 None:intergenic
GCTATACCAATGAGTTCTTT+TGG 0.254419 3_1:+52764105 None:intergenic
GTTGATGTTCATAAGGAAAA+TGG 0.259478 3_1:-52763058 Msa0362000:five_prime_UTR
GGCAGAAATGGCAGTTTCTT+TGG 0.260052 3_1:-52765174 Msa0362000:five_prime_UTR
TTGTTTCCAGGTTGAGAAAT+TGG 0.267148 3_1:-52759365 Msa0362000:intron
AACTTGCTTCACCCATGTTT+TGG 0.271043 3_1:+52764989 None:intergenic
ATCGATCTTGCCGGATTAGA+TGG 0.273690 3_1:-52761829 Msa0362000:five_prime_UTR
AGTAATTGGCTTGTTTCTAA+TGG 0.274397 3_1:+52760573 None:intergenic
AATAATATTCCTAAGAATTT+GGG 0.275256 3_1:-52763400 Msa0362000:five_prime_UTR
ATCTAGATACCTTGGTTCTA+AGG 0.276445 3_1:-52763294 Msa0362000:five_prime_UTR
GCTTGAAGTTCTCTATATTT+GGG 0.278799 3_1:-52762567 Msa0362000:five_prime_UTR
TTTGGCAACTCAAAATAATA+TGG 0.281733 3_1:+52763268 None:intergenic
TGAAGATCTAACATCCATTC+TGG 0.282119 3_1:+52762884 None:intergenic
ATTAACTCATGAACAGTCTT+TGG 0.283154 3_1:-52764175 Msa0362000:five_prime_UTR
GTGTTGCATTTCATTGATTA+AGG 0.285411 3_1:+52763021 None:intergenic
ACTTTCGGGAATGACCTTTC+AGG 0.297001 3_1:-52759934 Msa0362000:five_prime_UTR
TGATGTATTGTTTGATCATA+AGG 0.298243 3_1:+52759715 None:intergenic
TCGTTTATTACATTAGTAAT+TGG 0.298576 3_1:+52760559 None:intergenic
ATGGGAGCAGCCAATGTCTA+TGG 0.300690 3_1:-52761792 Msa0362000:five_prime_UTR
ACAGTTTGCACACTCAGATT+TGG 0.305935 3_1:-52760610 Msa0362000:five_prime_UTR
AAACATGGGTGAAGCAAGTT+AGG 0.306752 3_1:-52764986 Msa0362000:five_prime_UTR
GCTGAAGCTGATAAGGGATT+TGG 0.307501 3_1:-52763086 Msa0362000:five_prime_UTR
TCAAGGAAATTCAGAGTCTT+AGG 0.307611 3_1:-52759023 Msa0362000:five_prime_UTR
TAATCCAATTTAGTAATTAC+TGG 0.309252 3_1:-52757901 Msa0362000:three_prime_UTR
CTGAAGCTGATAAGGGATTT+GGG 0.310992 3_1:-52763085 Msa0362000:five_prime_UTR
ATACTTGAACGAGGCTTCTA+TGG 0.311140 3_1:+52763731 None:intergenic
AACCATTGACGATGCTTTAT+GGG 0.313281 3_1:-52763551 Msa0362000:five_prime_UTR
TCGTTATGTTTCTTTACATA+TGG 0.314596 3_1:-52763143 Msa0362000:five_prime_UTR
CAGATTCTCCACGTGGACTT+TGG 0.322757 3_1:-52762217 Msa0362000:five_prime_UTR
AATCTACGAAGCGTGTCTTT+TGG 0.330138 3_1:+52765326 None:intergenic
TTTGACTCAAATGGCAGAAA+TGG 0.333551 3_1:-52765186 Msa0362000:five_prime_UTR
AGACACAGCTGAAGCTGTTC+AGG 0.334002 3_1:-52758450 Msa0362000:CDS
GGAGCATGCCAATCGATTTA+GGG 0.334021 3_1:+52763320 None:intergenic
ATTCTTGCATGCCCATTAAC+AGG 0.334396 3_1:+52758711 None:intergenic
GCTGAAGCTGTTCAGGCTGC+TGG 0.342168 3_1:-52758443 Msa0362000:CDS
GGAGTCAAAATTATTGAAAA+AGG 0.345094 3_1:-52758501 Msa0362000:CDS
CTAAAGATTTGCAAACAAAA+AGG 0.353274 3_1:-52764447 Msa0362000:five_prime_UTR
AACTCTGGTCCATCAAATAT+TGG 0.354061 3_1:+52760051 None:intergenic
AGATTCTCCACGTGGACTTT+GGG 0.356483 3_1:-52762216 Msa0362000:five_prime_UTR
CTAAGCTTCCTAATCTCCTT+TGG 0.357553 3_1:+52763250 None:intergenic
TTCAGGAAAATCGTTTAAAC+GGG 0.358855 3_1:-52759917 Msa0362000:five_prime_UTR
GTCAGGCAAAGCCGAGTCTT+TGG 0.359123 3_1:-52759869 Msa0362000:five_prime_UTR
TACAAGAATCCACAACTTCC+TGG 0.359912 3_1:+52764235 None:intergenic
GTATCCTCTCTTAGAATTGA+TGG 0.361058 3_1:-52763712 Msa0362000:five_prime_UTR
CTCTGCAAGATGCTGCTTCA+TGG 0.363653 3_1:+52758184 None:intergenic
GAACCAAGGTATCTAGATTC+TGG 0.366762 3_1:+52763299 None:intergenic
TTGATTGATTTGATGGTAAA+GGG 0.367555 3_1:-52764639 Msa0362000:five_prime_UTR
GTCATGTTCATAGCTCAGTT+GGG 0.369449 3_1:-52760395 Msa0362000:five_prime_UTR
ACTCGCTGCTCTCTACATTA+AGG 0.371501 3_1:-52764700 Msa0362000:five_prime_UTR
GACACGCTTCGTAGATTTAG+TGG 0.373087 3_1:-52765320 Msa0362000:five_prime_UTR
ATTAAGGAAGCTGATGTTGT+AGG 0.376333 3_1:-52764684 Msa0362000:five_prime_UTR
CGTCAATGGTTGTTATTGAT+AGG 0.379329 3_1:+52763563 None:intergenic
TTAAAGGAATCTCTAAGTAT+AGG 0.380089 3_1:-52763459 Msa0362000:five_prime_UTR
AAGAAAAGAAGTGAAATATA+TGG 0.380457 3_1:-52764795 Msa0362000:five_prime_UTR
GGGGTGTGGAAGATGAATTT+GGG 0.380555 3_1:-52762547 Msa0362000:five_prime_UTR
TTTCAGGAAAATCGTTTAAA+CGG 0.384256 3_1:-52759918 Msa0362000:five_prime_UTR
TATCTAACTCATCGATTTGC+TGG 0.385197 3_1:+52760223 None:intergenic
ATTTATTTAAAGGATGGTAT+TGG 0.388802 3_1:-52763190 Msa0362000:five_prime_UTR
GTTTCTGAGAGTTCAACTTT+CGG 0.389009 3_1:-52759949 Msa0362000:five_prime_UTR
TATTATTATCTAAGTTAGAT+AGG 0.389476 3_1:+52760292 None:intergenic
TTGTGGTGTTTGATGATGTT+TGG 0.397459 3_1:-52764338 Msa0362000:five_prime_UTR
CTCTTCTATCAGCATCTTTG+AGG 0.397462 3_1:+52765045 None:intergenic
GGGGTTGGTTGATGTTCATA+AGG 0.400412 3_1:-52763065 Msa0362000:five_prime_UTR
ACTGCAATCACCTGTTTGTC+TGG 0.400699 3_1:-52758011 Msa0362000:three_prime_UTR
ATCAGCCTTATCGATCTTGC+CGG 0.402268 3_1:-52761838 Msa0362000:five_prime_UTR
TTGAGTTGCCAAAGGAGATT+AGG 0.403755 3_1:-52763258 Msa0362000:five_prime_UTR
AGAATTCGGAGCGATATATC+AGG 0.408074 3_1:-52758054 Msa0362000:CDS
TAGGAAAGCTGAAGCTGATA+AGG 0.411633 3_1:-52763093 Msa0362000:five_prime_UTR
TTTGATTGATTTGATGGTAA+AGG 0.412167 3_1:-52764640 Msa0362000:five_prime_UTR
TAAACTACTGAAACCCTTTG+TGG 0.414753 3_1:+52761873 None:intergenic
GGGAGGTAGTACTTGTTATG+AGG 0.414868 3_1:+52761027 None:intergenic
TGAACTGAAGTTAGAGAAGA+AGG 0.417903 3_1:-52758766 Msa0362000:five_prime_UTR
TTGTTATTTGCAGCTTCTGA+GGG 0.420953 3_1:-52759166 Msa0362000:intron
AAGAGAGAGATGGACAGAAA+TGG 0.421576 3_1:-52758860 Msa0362000:five_prime_UTR
CATCGAGTTATCTAGGAAGT+AGG 0.421838 3_1:-52759978 Msa0362000:five_prime_UTR
GCATTTAGTGGATGCTCTTA+CGG 0.422703 3_1:-52761166 Msa0362000:five_prime_UTR
TGCAAGCATATCAGTGATGA+TGG 0.423835 3_1:-52763616 Msa0362000:five_prime_UTR
GGAGGAAAAGGGGATGACTT+TGG 0.425314 3_1:-52763788 Msa0362000:five_prime_UTR
GGACAGCAACCTCGCGATCC+TGG 0.430205 3_1:-52764912 Msa0362000:five_prime_UTR
TTTGGAGTTGTTCAATAAGA+AGG 0.430474 3_1:-52764157 Msa0362000:five_prime_UTR
AAGCTCAGCAGAAAGAGATT+TGG 0.432007 3_1:+52758550 None:intergenic
CCATTAAGTCATCTGTTTGT+GGG 0.432060 3_1:-52764821 Msa0362000:five_prime_UTR
TCCTGAGGGTATTTCTCAAA+TGG 0.432236 3_1:-52764415 Msa0362000:five_prime_UTR
ACTGGTGTATCTGTAAATAT+CGG 0.433565 3_1:-52760270 Msa0362000:five_prime_UTR
GTTCTACCGAGGATTGGAAT+TGG 0.438756 3_1:-52762517 Msa0362000:five_prime_UTR
GAGTCGAGGGTCGTGCCATT+TGG 0.439283 3_1:+52764719 None:intergenic
AGAAAATCTCCAATATTTGA+TGG 0.439343 3_1:-52760060 Msa0362000:five_prime_UTR
CTGAGGGGCACTTCCGCAAA+TGG 0.439803 3_1:-52759150 Msa0362000:five_prime_UTR
GTCTGGAAGTAGATCCTACT+TGG 0.441015 3_1:-52757994 Msa0362000:three_prime_UTR
TCATTGATGTAGGCATTTAG+TGG 0.441216 3_1:-52761178 Msa0362000:intron
GTACAAATTTATTCTAATGA+TGG 0.441478 3_1:-52762473 Msa0362000:five_prime_UTR
TCTAACTTAGATAATAATAC+TGG 0.442467 3_1:-52760288 Msa0362000:five_prime_UTR
CATTAGAATAAATTTGTACA+AGG 0.442835 3_1:+52762477 None:intergenic
GGGTTTGTAAAGGAGGAAAA+GGG 0.443417 3_1:-52763799 Msa0362000:five_prime_UTR
GACACTTTGATTGTCGTGTA+TGG 0.445308 3_1:-52764521 Msa0362000:five_prime_UTR
CGCGAGGTTGCTGTCCTACA+TGG 0.448113 3_1:+52764919 None:intergenic
CTGAAGCTGTTCAGGCTGCT+GGG 0.448415 3_1:-52758442 Msa0362000:CDS
AACACTATCCCCATCTAATC+CGG 0.449078 3_1:+52761819 None:intergenic
CGAATTCTGCTCTCCATGCT+TGG 0.449817 3_1:+52758069 None:intergenic
CTGCTGAGCTTGCTGCATTG+AGG 0.450380 3_1:-52758538 Msa0362000:CDS
CAAGCATGGAGAGCAGAATT+CGG 0.451150 3_1:-52758068 Msa0362000:CDS
GGATCTACTTCCAGACAAAC+AGG 0.451399 3_1:+52758001 None:intergenic
CTTCCAAGGACATAACTTGC+GGG 0.452772 3_1:-52760358 Msa0362000:five_prime_UTR
AATTGAGCAACTAAATCAAT+TGG 0.453297 3_1:-52759453 Msa0362000:intron
GGAGCAAACAAGATATTAGA+AGG 0.453823 3_1:+52757828 None:intergenic
TCTTCAAAATCTTACTGTGT+TGG 0.454583 3_1:-52762867 Msa0362000:five_prime_UTR
ATTCTTCAGGGCACCACAAA+GGG 0.455985 3_1:-52761886 Msa0362000:intron
TTGTAGCAATCGAGTCAAAC+AGG 0.457250 3_1:+52761098 None:intergenic
TTGGAAAGTGTGAGGGCAAA+AGG 0.457493 3_1:-52759527 Msa0362000:five_prime_UTR
GAAGAAGGTTACAGAAGAGA+TGG 0.458338 3_1:-52758751 Msa0362000:five_prime_UTR
AGTGGATCTTTATCTGAATA+CGG 0.463844 3_1:+52762833 None:intergenic
GCTTTATGGGAGTGTATTGA+TGG 0.465375 3_1:-52763538 Msa0362000:five_prime_UTR
TCGATCTTGCCGGATTAGAT+GGG 0.468632 3_1:-52761828 Msa0362000:five_prime_UTR
AGACAGATTCACATCTAATT+GGG 0.468794 3_1:-52763954 Msa0362000:five_prime_UTR
AGAAATCGTTATCTCAGCTT+GGG 0.470181 3_1:-52761753 Msa0362000:intron
ATCTTTGAGGAAGGCTCTGA+TGG 0.471032 3_1:+52765058 None:intergenic
GGTCATGTTCATAGCTCAGT+TGG 0.473252 3_1:-52760396 Msa0362000:five_prime_UTR
CAATTATCTGTAATCCCCTC+TGG 0.473650 3_1:+52759836 None:intergenic
CAAGATATTAGAAGGATGAA+TGG 0.473896 3_1:+52757836 None:intergenic
CTCTAAGTATAGGTTATTGA+AGG 0.474273 3_1:-52763449 Msa0362000:five_prime_UTR
TGTAGAGAGCAGCGAGTCGA+GGG 0.476774 3_1:+52764706 None:intergenic
TATGTTTCTTTACATATGGA+TGG 0.476839 3_1:-52763139 Msa0362000:five_prime_UTR
TGTGGTTTCTGTGGTAGGAA+TGG 0.478105 3_1:-52764601 Msa0362000:five_prime_UTR
TTCTAAGCATGATGCTATGA+TGG 0.478264 3_1:-52758636 Msa0362000:CDS
GGAGCTCGAGAGTGTTTGTA+AGG 0.478490 3_1:-52759489 Msa0362000:five_prime_UTR
AAGCATGGCTTGAGATAGTA+AGG 0.479439 3_1:+52763895 None:intergenic
GTGGTTTCTGTGGTAGGAAT+GGG 0.480112 3_1:-52764600 Msa0362000:five_prime_UTR
AGAAAGCTAAGACATCTTAT+CGG 0.481146 3_1:-52763229 Msa0362000:five_prime_UTR
TTCTCAATAAATAAATAAAA+GGG 0.482142 3_1:-52762185 Msa0362000:intron
TGTTAATGGGCATGCAAGAA+TGG 0.486241 3_1:-52758709 Msa0362000:five_prime_UTR
TGAAGTAAAGCTACAAATCC+AGG 0.487001 3_1:+52764894 None:intergenic
TCTAGATACCTTGGTTCTAA+GGG 0.488352 3_1:-52763293 Msa0362000:five_prime_UTR
TTATTGATTTATTTAAAGGA+TGG 0.488503 3_1:-52763196 Msa0362000:five_prime_UTR
GCTGATAAGGGATTTGGGGT+TGG 0.490010 3_1:-52763080 Msa0362000:five_prime_UTR
AGGAAAGCTGAAGCTGATAA+GGG 0.491739 3_1:-52763092 Msa0362000:five_prime_UTR
AGCTGAAGGGTTTGTAAAGG+AGG 0.492942 3_1:-52763806 Msa0362000:five_prime_UTR
GGAGGTAGTACTTGTTATGA+GGG 0.493549 3_1:+52761028 None:intergenic
TGGTAAAATCCAACACTTGA+AGG 0.494950 3_1:-52760521 Msa0362000:intron
GCAGAGGTAATTGAAGCGTT+AGG 0.496196 3_1:-52763112 Msa0362000:five_prime_UTR
AGGGATAGCTGAGGTGAAGA+AGG 0.496982 3_1:-52758612 Msa0362000:CDS
CTTCAAGCTTCTCCAAGTGT+TGG 0.497095 3_1:+52762582 None:intergenic
AGGGTTTGTAAAGGAGGAAA+AGG 0.498156 3_1:-52763800 Msa0362000:five_prime_UTR
GAAATTACTTGCAGAATTCG+AGG 0.499489 3_1:-52764365 Msa0362000:five_prime_UTR
AAGAAATCGTTATCTCAGCT+TGG 0.499497 3_1:-52761754 Msa0362000:five_prime_UTR
AGCGCAGTTCTACCGAGGAT+TGG 0.499953 3_1:-52762523 Msa0362000:five_prime_UTR
GCCATTAAGTCATCTGTTTG+TGG 0.501169 3_1:-52764822 Msa0362000:five_prime_UTR
GATCCTTTAGTGGAATAGTT+CGG 0.502067 3_1:-52763588 Msa0362000:five_prime_UTR
TTATGCTTAAATACTTCAAG+TGG 0.502302 3_1:+52763368 None:intergenic
TTCATGATTGCAACAAAGAC+GGG 0.503030 3_1:+52757807 None:intergenic
CGATAATAGGAATGAGGAGC+TGG 0.505395 3_1:-52758890 Msa0362000:five_prime_UTR
ACCAACTGGCATCCAACACT+TGG 0.507678 3_1:-52762594 Msa0362000:five_prime_UTR
CAATGCTTTCACTTAGGCAA+AGG 0.508741 3_1:+52757771 None:intergenic
GTATATTCTTCAGATTAGAA+AGG 0.509347 3_1:+52762615 None:intergenic
AATCTGAAGAATATACCAAC+TGG 0.509509 3_1:-52762608 Msa0362000:five_prime_UTR
ATATAGTGAATGACCATTTG+CGG 0.509693 3_1:+52759137 None:intergenic
TTTGTTATTTGCAGCTTCTG+AGG 0.510817 3_1:-52759167 Msa0362000:intron
CTAGCAATTGTTGCCGTCGG+TGG 0.511465 3_1:-52764048 Msa0362000:five_prime_UTR
ACAACATCAATTATGAAGAA+AGG 0.511620 3_1:+52765275 None:intergenic
GTACTTGTTATGAGGGGAGA+TGG 0.511802 3_1:+52761035 None:intergenic
AGGAGTTTACCTTCAAGTGT+TGG 0.512722 3_1:+52760512 None:intergenic
GGACAGAAATGGAAAGCGAT+TGG 0.518530 3_1:-52758849 Msa0362000:five_prime_UTR
TGAGCTTGCTGCATTGAGGT+TGG 0.518935 3_1:-52758534 Msa0362000:CDS
TCATGTTCATAGCTCAGTTG+GGG 0.520929 3_1:-52760394 Msa0362000:five_prime_UTR
AACAAGGAACCAGGAAGTTG+TGG 0.521898 3_1:-52764244 Msa0362000:five_prime_UTR
GTATTCAAATTTGATTGTGA+TGG 0.524734 3_1:-52764135 Msa0362000:five_prime_UTR
CTAATCCGGCAAGATCGATA+AGG 0.525068 3_1:+52761833 None:intergenic
CATTGAGGTTGGAGAGGGAA+AGG 0.525492 3_1:-52758523 Msa0362000:CDS
GGGTATTTCTCAAATGGATC+GGG 0.527460 3_1:-52764409 Msa0362000:five_prime_UTR
GATGGACAAAGATCCTTTAG+TGG 0.528867 3_1:-52763598 Msa0362000:five_prime_UTR
TTCTCACGATAATAGGAATG+AGG 0.529552 3_1:-52758896 Msa0362000:five_prime_UTR
CGCACTGTGGTTTCTGTGGT+AGG 0.529815 3_1:-52764606 Msa0362000:five_prime_UTR
CGAGGATTGGAATTGGATCA+TGG 0.530289 3_1:-52762510 Msa0362000:five_prime_UTR
GTGGTAGGAATGGGAGGGCG+AGG 0.530583 3_1:-52764591 Msa0362000:five_prime_UTR
GTGAAAGCCGACATGCCAAA+TGG 0.530715 3_1:-52764734 Msa0362000:five_prime_UTR
TTTCCCGCAAGTTATGTCCT+TGG 0.530837 3_1:+52760355 None:intergenic
GGTCGTGCCATTTGGCATGT+CGG 0.532383 3_1:+52764727 None:intergenic
AGTTCTCTATATTTGGGGTG+TGG 0.533780 3_1:-52762561 Msa0362000:five_prime_UTR
CCGCTAGCAATTGTTGCCGT+CGG 0.535552 3_1:-52764051 Msa0362000:five_prime_UTR
AACATGGGTGAAGCAAGTTA+GGG 0.535925 3_1:-52764985 Msa0362000:five_prime_UTR
TGCTGCATTGAGGTTGGAGA+GGG 0.535969 3_1:-52758528 Msa0362000:CDS
TTTGGAGACTCGGACAACTC+TGG 0.538030 3_1:+52760036 None:intergenic
TATTCAAATTTGATTGTGAT+GGG 0.538330 3_1:-52764134 Msa0362000:five_prime_UTR
TTGATTTGATGGTAAAGGGA+AGG 0.538751 3_1:-52764635 Msa0362000:five_prime_UTR
GGTAAGACTGGATGCTTCCA+AGG 0.538941 3_1:-52760372 Msa0362000:five_prime_UTR
GCGCCGAACTATTCCACTAA+AGG 0.540197 3_1:+52763585 None:intergenic
TTGCAAGTCAAGCATCTCAA+TGG 0.540454 3_1:+52764200 None:intergenic
AGTGGCCTCAATGCAGACTC+TGG 0.540964 3_1:+52758152 None:intergenic
ACCTTGTCGATTTCTGGACA+TGG 0.542707 3_1:+52759742 None:intergenic
TCCAAGTGTTGGATGCCAGT+TGG 0.543129 3_1:+52762593 None:intergenic
CTCCATGAAGGATGAAAACA+AGG 0.544754 3_1:-52759287 Msa0362000:intron
GGGAGAACTTATTAGAGTGA+AGG 0.545000 3_1:-52760421 Msa0362000:five_prime_UTR
GTTTCTGTGGTAGGAATGGG+AGG 0.545229 3_1:-52764597 Msa0362000:five_prime_UTR
CTCCCATAAAGCATCGTCAA+TGG 0.545346 3_1:+52763549 None:intergenic
GAGACTTTCTGCCAAAGACT+CGG 0.546257 3_1:+52759858 None:intergenic
GGGGATGACTTTGGAAGAAG+TGG 0.547515 3_1:-52763779 Msa0362000:five_prime_UTR
AACATAACGAAGAGTCTGTA+GGG 0.548549 3_1:+52763156 None:intergenic
GATAGCTGAAGGGTTTGTAA+AGG 0.548565 3_1:-52763809 Msa0362000:five_prime_UTR
TTCCAGGTTGAGAAATTGGA+AGG 0.548670 3_1:-52759361 Msa0362000:intron
ATTGAGGTTGGAGAGGGAAA+GGG 0.549474 3_1:-52758522 Msa0362000:CDS
GATGGGGATAGTGTTGACAA+TGG 0.551659 3_1:-52761811 Msa0362000:five_prime_UTR
AGGGTATTTCTCAAATGGAT+CGG 0.551687 3_1:-52764410 Msa0362000:five_prime_UTR
AAGCATGATGCTATGATGGA+AGG 0.551697 3_1:-52758632 Msa0362000:CDS
ATGGGGATAGTGTTGACAAT+GGG 0.551843 3_1:-52761810 Msa0362000:five_prime_UTR
TCATTCACTATATATTATAG+AGG 0.552661 3_1:-52759127 Msa0362000:five_prime_UTR
TGATTTGATGGTAAAGGGAA+GGG 0.553452 3_1:-52764634 Msa0362000:five_prime_UTR
CTTGAAGTTCTCTATATTTG+GGG 0.553794 3_1:-52762566 Msa0362000:five_prime_UTR
AAAAGGCCACATGAGGGAGA+AGG 0.554701 3_1:-52759510 Msa0362000:five_prime_UTR
AGGCTCCTTTCGATCCAAGT+AGG 0.555188 3_1:+52757980 None:intergenic
TGTTCAATGCCGAGTTCAGT+TGG 0.556637 3_1:+52759806 None:intergenic
TGTTGTCCAAAAGAACTCAT+TGG 0.557556 3_1:-52764111 Msa0362000:five_prime_UTR
GTTGAAGTCCCTAAATCGAT+TGG 0.558678 3_1:-52763328 Msa0362000:five_prime_UTR
GCTCCAGAATCTAGATACCT+TGG 0.560259 3_1:-52763302 Msa0362000:five_prime_UTR
TTTGACAGCAAGGATATCAT+GGG 0.560480 3_1:-52764543 Msa0362000:five_prime_UTR
AGCATGATGCTATGATGGAA+GGG 0.560768 3_1:-52758631 Msa0362000:CDS
TGAAGCTGTTCAGGCTGCTG+GGG 0.561928 3_1:-52758441 Msa0362000:CDS
ATGCAAACTTCATTACAGTC+AGG 0.562909 3_1:-52759886 Msa0362000:five_prime_UTR
TGGGAGCAGCCAATGTCTAT+GGG 0.563435 3_1:-52761791 Msa0362000:five_prime_UTR
TCTATCAGCATCTTTGAGGA+AGG 0.564288 3_1:+52765049 None:intergenic
GACTTCAACTTCAAGTGCGA+TGG 0.564883 3_1:-52762245 Msa0362000:five_prime_UTR
GTATTGATGGATCTCATGTT+CGG 0.565264 3_1:-52763525 Msa0362000:five_prime_UTR
ATTAGAATAAATTTGTACAA+GGG 0.565308 3_1:+52762478 None:intergenic
AGTTAGATAGTTCATGTGAA+GGG 0.567145 3_1:-52760209 Msa0362000:five_prime_UTR
TGGGAAAGAATCACTACTCA+AGG 0.567723 3_1:-52759040 Msa0362000:five_prime_UTR
GTCTGCTTTCCCATAGACAT+TGG 0.567770 3_1:+52761782 None:intergenic
CTAGTGAAGGAGCCAAAACA+TGG 0.567788 3_1:-52765001 Msa0362000:five_prime_UTR
ATCCTTGTTCTAGAGAACGT+TGG 0.568331 3_1:+52764769 None:intergenic
TTAGAATAAATTTGTACAAG+GGG 0.569144 3_1:+52762479 None:intergenic
CACGCCAGCGGTACAACTCA+AGG 0.571220 3_1:+52758797 None:intergenic
TCTCAATCATATAATGCTGA+AGG 0.571435 3_1:-52764489 Msa0362000:five_prime_UTR
GATGAGTATATGATCCATGT+AGG 0.572925 3_1:-52764933 Msa0362000:five_prime_UTR
CTTCATGATTGCAACAAAGA+CGG 0.574286 3_1:+52757806 None:intergenic
TCAGAATTCAATCTGCTCAA+AGG 0.574779 3_1:-52765122 Msa0362000:five_prime_UTR
GAACTTATTAGAGTGAAGGT+TGG 0.578969 3_1:-52760417 Msa0362000:five_prime_UTR
TGAAGCTGATAAGGGATTTG+GGG 0.580358 3_1:-52763084 Msa0362000:five_prime_UTR
TGATTATCACCAACTGAACT+CGG 0.581113 3_1:-52759815 Msa0362000:five_prime_UTR
ACTCGACAATGGATAGCTGA+AGG 0.581392 3_1:-52763820 Msa0362000:five_prime_UTR
TTGCTACAAGAACCACTTGG+TGG 0.582105 3_1:-52761084 Msa0362000:five_prime_UTR
CATGATCCAATTCCAATCCT+CGG 0.582430 3_1:+52762511 None:intergenic
TAGATCCTACTTGGATCGAA+AGG 0.585182 3_1:-52757985 Msa0362000:three_prime_UTR
ATGTAGAGAGCAGCGAGTCG+AGG 0.585784 3_1:+52764705 None:intergenic
GAAGGAGACAACACTAGTGA+AGG 0.587646 3_1:-52765014 Msa0362000:five_prime_UTR
ATTCCAAAATACATTTCTGT+CGG 0.587934 3_1:-52760186 Msa0362000:five_prime_UTR
AAACATAACGAAGAGTCTGT+AGG 0.588951 3_1:+52763155 None:intergenic
AGTTTAGCATTTCCACCAAG+TGG 0.590811 3_1:+52761072 None:intergenic
AAAAGGAGTGGAACCTCCTG+AGG 0.591954 3_1:-52764430 Msa0362000:five_prime_UTR
TCCATTTGAGAAATACCCTC+AGG 0.591956 3_1:+52764414 None:intergenic
AAAGAAATTATTATCGACAA+AGG 0.594036 3_1:-52762674 Msa0362000:five_prime_UTR
ACTTGTAACAACAAGGAACC+AGG 0.594371 3_1:-52764253 Msa0362000:five_prime_UTR
TTTGCCATCAATTCTAAGAG+AGG 0.594957 3_1:+52763708 None:intergenic
CGAAGAGAGTGACTCGACAA+TGG 0.595521 3_1:-52763831 Msa0362000:five_prime_UTR
TGAGGGCAAAAGGCCACATG+AGG 0.596085 3_1:-52759517 Msa0362000:five_prime_UTR
GGTTAAAGGAGTTTCCAGAA+TGG 0.597073 3_1:-52762898 Msa0362000:five_prime_UTR
GATTCTTCAGGGCACCACAA+AGG 0.600504 3_1:-52761887 Msa0362000:intron
CGAAGCATTTGGAAAGTGTG+AGG 0.601049 3_1:-52759535 Msa0362000:intron
GGTTTGTAAAGGAGGAAAAG+GGG 0.601751 3_1:-52763798 Msa0362000:five_prime_UTR
GAGTTAGATAGTTCATGTGA+AGG 0.602229 3_1:-52760210 Msa0362000:five_prime_UTR
GATAGAAGAGCTAAAGCTGA+AGG 0.604343 3_1:-52765032 Msa0362000:five_prime_UTR
ATGCTTATGATGACCAAGCA+TGG 0.604857 3_1:-52758082 Msa0362000:CDS
GATTCCTTTAAAATAGGACG+AGG 0.604869 3_1:+52763471 None:intergenic
TATGATGCAGACACAACTAC+AGG 0.605267 3_1:-52760126 Msa0362000:five_prime_UTR
ACAGGTGAAGAAAATTCTGT+TGG 0.605981 3_1:-52760108 Msa0362000:five_prime_UTR
GGGTGTGGAAGATGAATTTG+GGG 0.606366 3_1:-52762546 Msa0362000:five_prime_UTR
TTCACTTCTCTGCACGCCAG+CGG 0.607040 3_1:+52758785 None:intergenic
AGAGCGCACTGTGGTTTCTG+TGG 0.607040 3_1:-52764610 Msa0362000:five_prime_UTR
TATGATCCGTGAAAAGAATG+AGG 0.611207 3_1:-52763650 Msa0362000:five_prime_UTR
TGTCAAAGTTAAACAGCCAA+AGG 0.612551 3_1:+52759765 None:intergenic
ATGTTAACAACGGAAGCAGT+TGG 0.613453 3_1:+52765144 None:intergenic
CGAGCTCCTTCTCCCTCATG+TGG 0.613866 3_1:+52759504 None:intergenic
ACATATGGATGGAGCAGCAG+AGG 0.613866 3_1:-52763128 Msa0362000:five_prime_UTR
ACTCCAAAATACAAGAAGCA+TGG 0.615056 3_1:+52763880 None:intergenic
TGGAAAATGAAAGAGAGAGA+TGG 0.616686 3_1:-52758870 Msa0362000:five_prime_UTR
TTGCTGCATTGAGGTTGGAG+AGG 0.616749 3_1:-52758529 Msa0362000:CDS
AGCTGAGGTGAAGAAGGCAG+TGG 0.617853 3_1:-52758606 Msa0362000:CDS
CGATCTTGCCGGATTAGATG+GGG 0.618862 3_1:-52761827 Msa0362000:five_prime_UTR
TCAGAATCCTCTTGATACAG+TGG 0.619034 3_1:+52758134 None:intergenic
CTGACCTTGAGTTGTACCGC+TGG 0.620883 3_1:-52758801 Msa0362000:five_prime_UTR
TGAAGAGTATAGCTCCATGA+AGG 0.620907 3_1:-52759299 Msa0362000:five_prime_UTR
TGTTATTTGCAGCTTCTGAG+GGG 0.621378 3_1:-52759165 Msa0362000:intron
GCTTCCAAGGACATAACTTG+CGG 0.622425 3_1:-52760359 Msa0362000:five_prime_UTR
GCAGAATTCGAGGTACGTTG+TGG 0.625556 3_1:-52764355 Msa0362000:five_prime_UTR
GAAGCATTTGGAAAGTGTGA+GGG 0.627230 3_1:-52759534 Msa0362000:intron
TTGAATTCTGATGTTAACAA+CGG 0.629151 3_1:+52765134 None:intergenic
AGTTTGCACACTCAGATTTG+GGG 0.630702 3_1:-52760608 Msa0362000:five_prime_UTR
CTCGACAATGGATAGCTGAA+GGG 0.634517 3_1:-52763819 Msa0362000:five_prime_UTR
TGGGGAGCGCAGTTCTACCG+AGG 0.635306 3_1:-52762528 Msa0362000:five_prime_UTR
ACTTTGGAAGAAGTGGCAGA+AGG 0.635632 3_1:-52763772 Msa0362000:five_prime_UTR
TTTGGCAGAAAGTCTCCAGA+GGG 0.638970 3_1:-52759851 Msa0362000:five_prime_UTR
TATAGATAAAAGTCCACCGA+CGG 0.639992 3_1:+52764035 None:intergenic
TTCCAACGTTCTCTAGAACA+AGG 0.641124 3_1:-52764771 Msa0362000:five_prime_UTR
TGCTTGGTCATCATAAGCAT+AGG 0.642011 3_1:+52758085 None:intergenic
ATTTGAGAAATACCCTCAGG+AGG 0.647171 3_1:+52764417 None:intergenic
AGTTAGATAGGAGTAGAGAA+CGG 0.647435 3_1:+52760304 None:intergenic
CTAGATACCTTGGTTCTAAG+GGG 0.653546 3_1:-52763292 Msa0362000:five_prime_UTR
ATTGAGGCCACTGTATCAAG+AGG 0.655463 3_1:-52758141 Msa0362000:CDS
CACAAATCCCAAAGTCCACG+TGG 0.656749 3_1:+52762209 None:intergenic
AAAGGAGTGGAACCTCCTGA+GGG 0.658673 3_1:-52764429 Msa0362000:five_prime_UTR
CGATTGCTACAAGAACCACT+TGG 0.663007 3_1:-52761087 Msa0362000:five_prime_UTR
CTGTACGACAAGATGCACAA+AGG 0.663712 3_1:+52759659 None:intergenic
TTACTGTGTTGGAATTGATG+TGG 0.665807 3_1:-52762856 Msa0362000:five_prime_UTR
ACAAGCAGCATATGTTGCAG+AGG 0.667695 3_1:-52758390 Msa0362000:intron
ATATGGACCCCTTAGAACCA+AGG 0.668943 3_1:+52763285 None:intergenic
GCTACAAATCCAGGATCGCG+AGG 0.669814 3_1:+52764903 None:intergenic
CAGCTGCTATTCGACGACGA+GGG 0.675774 3_1:+52764853 None:intergenic
AATTGCCAGAGTCTGCATTG+AGG 0.675854 3_1:-52758157 Msa0362000:CDS
TCTGCTCAAAGGTGTTCACA+AGG 0.676557 3_1:-52765111 Msa0362000:five_prime_UTR
TCAGCTGCTATTCGACGACG+AGG 0.677243 3_1:+52764852 None:intergenic
CTTTGGCAGAAAGTCTCCAG+AGG 0.677324 3_1:-52759852 Msa0362000:five_prime_UTR
AATCAAATTCAACTCAACGA+AGG 0.679294 3_1:+52762961 None:intergenic
AAATAACCAAAGGAAAAGCG+TGG 0.683541 3_1:-52760007 Msa0362000:five_prime_UTR
AACGAGGCTGACGATTTGAG+TGG 0.685226 3_1:-52760541 Msa0362000:five_prime_UTR
GAGGGCAAAAGGCCACATGA+GGG 0.688039 3_1:-52759516 Msa0362000:five_prime_UTR
GAGGTAGTACTTGTTATGAG+GGG 0.691729 3_1:+52761029 None:intergenic
GTCAAACAGGAGTTACTGTG+TGG 0.692743 3_1:+52761111 None:intergenic
TCAGGAAAATCGTTTAAACG+GGG 0.694860 3_1:-52759916 Msa0362000:five_prime_UTR
GGCAATTCAGATTCTCCACG+TGG 0.704009 3_1:-52762224 Msa0362000:five_prime_UTR
TAGTGAAGGAGCCAAAACAT+GGG 0.711939 3_1:-52765000 Msa0362000:five_prime_UTR
TTTCTGTGGTAGGAATGGGA+GGG 0.719161 3_1:-52764596 Msa0362000:five_prime_UTR
GTAGGATACTTGTAACAACA+AGG 0.720515 3_1:-52764260 Msa0362000:five_prime_UTR
AATTACTAATGTAATAAACG+AGG 0.724949 3_1:-52760557 Msa0362000:five_prime_UTR
CATGTTCATAGCTCAGTTGG+GGG 0.725182 3_1:-52760393 Msa0362000:five_prime_UTR
TGTATCTGTAAATATCGGCG+AGG 0.731415 3_1:-52760265 Msa0362000:five_prime_UTR
ACCATGTCCAGAAATCGACA+AGG 0.737578 3_1:-52759743 Msa0362000:five_prime_UTR
TAAGAGAGGATACTTGAACG+AGG 0.745474 3_1:+52763722 None:intergenic
CCGACGGCAACAATTGCTAG+CGG 0.748937 3_1:+52764051 None:intergenic
TTGGCAGAAAGTCTCCAGAG+GGG 0.769590 3_1:-52759850 Msa0362000:five_prime_UTR
TATGATGGAAGGGATAGCTG+AGG 0.777879 3_1:-52758621 Msa0362000:CDS
GGGAAGGGAAGAGCGCACTG+TGG 0.784185 3_1:-52764619 Msa0362000:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATATATTTATA+GGG + chr3_1:52760974-52760993 None:intergenic 0.0%
!! AAATAAAAAAATATATTTAT+AGG + chr3_1:52760975-52760994 None:intergenic 0.0%
!! AAAAATATTATATAAATATA+TGG + chr3_1:52761756-52761775 None:intergenic 0.0%
!! TTTGAAAAATCTTAATTTAA+CGG - chr3_1:52760424-52760443 Msa0362000:intron 10.0%
!! TTTCTCAATAAATAAATAAA+AGG - chr3_1:52760877-52760896 Msa0362000:intron 10.0%
!! TTCTCAATAAATAAATAAAA+GGG - chr3_1:52760878-52760897 Msa0362000:intron 10.0%
!! GTAAATAAAAAAAAAATTAC+AGG + chr3_1:52760951-52760970 None:intergenic 10.0%
!! ATTTCTGTAAAAAAAAAATT+TGG - chr3_1:52761025-52761044 Msa0362000:intron 10.0%
!! ATAAAAACAAAAATTTACAA+AGG - chr3_1:52761075-52761094 Msa0362000:five_prime_UTR 10.0%
!!! ATAAATTATTTCTATAACAA+AGG - chr3_1:52761404-52761423 Msa0362000:intron 10.0%
!!! TTTTTTTTATAAGCTATATT+TGG - chr3_1:52762229-52762248 Msa0362000:five_prime_UTR 10.0%
!! AATAATATTCCTAAGAATTT+GGG - chr3_1:52759663-52759682 Msa0362000:five_prime_UTR 15.0%
!!! ACTGTTATTGATTTATTTAA+AGG - chr3_1:52759863-52759882 Msa0362000:five_prime_UTR 15.0%
!!! TTATTGATTTATTTAAAGGA+TGG - chr3_1:52759867-52759886 Msa0362000:five_prime_UTR 15.0%
!!! AAATTAAGATTTTTCAAAGA+AGG + chr3_1:52760422-52760441 None:intergenic 15.0%
!! ATTAGAATAAATTTGTACAA+GGG + chr3_1:52760588-52760607 None:intergenic 15.0%
!! ATTAAAAATTCTCATACATA+TGG + chr3_1:52760690-52760709 None:intergenic 15.0%
!! AAATAAATAAAAGGGTTAAT+AGG - chr3_1:52760886-52760905 Msa0362000:intron 15.0%
!! AATAAATAAAAGGGTTAATA+GGG - chr3_1:52760887-52760906 Msa0362000:intron 15.0%
!! AGATAGTTATAAAAAAAGAA+GGG + chr3_1:52762059-52762078 None:intergenic 15.0%
!! AAGATAGTTATAAAAAAAGA+AGG + chr3_1:52762060-52762079 None:intergenic 15.0%
!!! ATGTATCTATTAATTTGAAA+AGG - chr3_1:52762265-52762284 Msa0362000:intron 15.0%
!! TATTATTATCTAAGTTAGAT+AGG + chr3_1:52762774-52762793 None:intergenic 15.0%
!! AATTATGAAGAAAGGAAAAA+AGG + chr3_1:52757783-52757802 None:intergenic 20.0%
!! AAGAAAAGAAGTGAAATATA+TGG - chr3_1:52758268-52758287 Msa0362000:CDS 20.0%
!!! AAATCAATCAAACTTTTTCT+TGG + chr3_1:52758415-52758434 None:intergenic 20.0%
!!! AAAAAGTTTGATTGATTTGA+TGG - chr3_1:52758417-52758436 Msa0362000:CDS 20.0%
!!! ATGTTTGGAATAAACATTTT+TGG - chr3_1:52758740-52758759 Msa0362000:five_prime_UTR 20.0%
!!! TGTTTGGAATAAACATTTTT+GGG - chr3_1:52758741-52758760 Msa0362000:five_prime_UTR 20.0%
!! TATTCAAATTTGATTGTGAT+GGG - chr3_1:52758929-52758948 Msa0362000:five_prime_UTR 20.0%
!! TGAAATTGTTAAAAAATGCA+AGG - chr3_1:52758984-52759003 Msa0362000:five_prime_UTR 20.0%
!! GAAATTGTTAAAAAATGCAA+GGG - chr3_1:52758985-52759004 Msa0362000:five_prime_UTR 20.0%
!! GAATAATATTCCTAAGAATT+TGG - chr3_1:52759662-52759681 Msa0362000:five_prime_UTR 20.0%
!! ATTTATTTAAAGGATGGTAT+TGG - chr3_1:52759873-52759892 Msa0362000:five_prime_UTR 20.0%
!! AAAGAAATTATTATCGACAA+AGG - chr3_1:52760389-52760408 Msa0362000:five_prime_UTR 20.0%
!! TTAGAATAAATTTGTACAAG+GGG + chr3_1:52760587-52760606 None:intergenic 20.0%
!! CATTAGAATAAATTTGTACA+AGG + chr3_1:52760589-52760608 None:intergenic 20.0%
!! GTACAAATTTATTCTAATGA+TGG - chr3_1:52760590-52760609 Msa0362000:five_prime_UTR 20.0%
!! GTTCGAAAAAAATAAGTTAT+AGG + chr3_1:52760651-52760670 None:intergenic 20.0%
!!! TTTTTTTATGACCTATAAAG+GGG + chr3_1:52761048-52761067 None:intergenic 20.0%
!!! GTTTTTTTATGACCTATAAA+GGG + chr3_1:52761047-52761066 None:intergenic 20.0%
!!! GTTTTTTTATGACCTATAAA+GGG - chr3_1:52761047-52761066 Msa0362000:five_prime_UTR 20.0%
!!! TTTTTTTATGACCTATAAAG+GGG - chr3_1:52761048-52761067 Msa0362000:five_prime_UTR 20.0%
!! AAATTTATAGAGTGTAAAAC+CGG - chr3_1:52761108-52761127 Msa0362000:five_prime_UTR 20.0%
!! TTAATAATATAGGTCATTTC+CGG + chr3_1:52761130-52761149 None:intergenic 20.0%
!! TTACAAAAAGAAAACAATCA+AGG + chr3_1:52761855-52761874 None:intergenic 20.0%
!!! ACAAATTGGTAGTAATTATA+AGG - chr3_1:52762196-52762215 Msa0362000:five_prime_UTR 20.0%
!!! CAAATTGGTAGTAATTATAA+GGG - chr3_1:52762197-52762216 Msa0362000:five_prime_UTR 20.0%
!! TCGTTTATTACATTAGTAAT+TGG + chr3_1:52762507-52762526 None:intergenic 20.0%
!! AATTACTAATGTAATAAACG+AGG - chr3_1:52762506-52762525 Msa0362000:five_prime_UTR 20.0%
!!! TTAATTGAAACAGTTTTAGA+AGG - chr3_1:52762581-52762600 Msa0362000:five_prime_UTR 20.0%
!! TCTAACTTAGATAATAATAC+TGG - chr3_1:52762775-52762794 Msa0362000:five_prime_UTR 20.0%
!!! CTTTGGTTATTTTTGAATTT+TGG + chr3_1:52763048-52763067 None:intergenic 20.0%
!! CAAAATTCAAAAATAACCAA+AGG - chr3_1:52763046-52763065 Msa0362000:five_prime_UTR 20.0%
!!! ATTAAGTTGAAACATACTTT+TGG + chr3_1:52763447-52763466 None:intergenic 20.0%
!! TCATTCACTATATATTATAG+AGG - chr3_1:52763936-52763955 Msa0362000:five_prime_UTR 20.0%
!!! ATCATATTTTTCTTGAAGAT+CGG + chr3_1:52764392-52764411 None:intergenic 20.0%
!!! TTACATTTCTTTTGTTATAC+AGG - chr3_1:52764769-52764788 Msa0362000:five_prime_UTR 20.0%
!!! TATCTAAAAATTGCTTTTAC+AGG + chr3_1:52765106-52765125 None:intergenic 20.0%
!! TAATCCAATTTAGTAATTAC+TGG - chr3_1:52765162-52765181 Msa0362000:five_prime_UTR 20.0%
! ACAACATCAATTATGAAGAA+AGG + chr3_1:52757791-52757810 None:intergenic 25.0%
!!! AATCACAATTTTGACTCAAA+TGG - chr3_1:52757868-52757887 Msa0362000:three_prime_UTR 25.0%
! TTGAATTCTGATGTTAACAA+CGG + chr3_1:52757932-52757951 None:intergenic 25.0%
!!! TTTGATTGATTTGATGGTAA+AGG - chr3_1:52758423-52758442 Msa0362000:CDS 25.0%
!!! TTGATTGATTTGATGGTAAA+GGG - chr3_1:52758424-52758443 Msa0362000:CDS 25.0%
! CTAAAGATTTGCAAACAAAA+AGG - chr3_1:52758616-52758635 Msa0362000:CDS 25.0%
!! TTGATAGTAAAAATGGAAGT+AGG - chr3_1:52758785-52758804 Msa0362000:five_prime_UTR 25.0%
! GTATTCAAATTTGATTGTGA+TGG - chr3_1:52758928-52758947 Msa0362000:five_prime_UTR 25.0%
!! GATTTAACTTCATAATCTTC+TGG + chr3_1:52759213-52759232 None:intergenic 25.0%
!!! CTTAGAGATTCCTTTAAAAT+AGG + chr3_1:52759601-52759620 None:intergenic 25.0%
! TTAAAGGAATCTCTAAGTAT+AGG - chr3_1:52759604-52759623 Msa0362000:intron 25.0%
! ATGAAATTTCCCAAATTCTT+AGG + chr3_1:52759675-52759694 None:intergenic 25.0%
! TTATGCTTAAATACTTCAAG+TGG + chr3_1:52759698-52759717 None:intergenic 25.0%
! TTTGGCAACTCAAAATAATA+TGG + chr3_1:52759798-52759817 None:intergenic 25.0%
!!! ATATTATTTTGAGTTGCCAA+AGG - chr3_1:52759797-52759816 Msa0362000:five_prime_UTR 25.0%
! TCGTTATGTTTCTTTACATA+TGG - chr3_1:52759920-52759939 Msa0362000:five_prime_UTR 25.0%
! TATGTTTCTTTACATATGGA+TGG - chr3_1:52759924-52759943 Msa0362000:five_prime_UTR 25.0%
! TTCAAAAACTTTCGCTAAAA+CGG - chr3_1:52760141-52760160 Msa0362000:five_prime_UTR 25.0%
! GTATATTCTTCAGATTAGAA+AGG + chr3_1:52760451-52760470 None:intergenic 25.0%
! GCAGAGAAATTAAAAAGTTA+AGG - chr3_1:52760612-52760631 Msa0362000:five_prime_UTR 25.0%
!!! TTTTTATTTACCCCCTTTAT+AGG - chr3_1:52760986-52761005 Msa0362000:intron 25.0%
!!! TTTTTTATGACCTATAAAGG+GGG + chr3_1:52761049-52761068 None:intergenic 25.0%
!!! CGTTTTTTTATGACCTATAA+AGG + chr3_1:52761002-52761021 None:intergenic 25.0%
!!! GGTTTTTTTATGACCTATAA+AGG - chr3_1:52761046-52761065 Msa0362000:five_prime_UTR 25.0%
!!! TTTTTTATGACCTATAAAGG+GGG - chr3_1:52761049-52761068 Msa0362000:five_prime_UTR 25.0%
!!! TTTTTATTTACCCCCTTTAT+AGG + chr3_1:52760986-52761005 None:intergenic 25.0%
!! TTTCATTAACTGATTCTTCA+GGG - chr3_1:52761165-52761184 Msa0362000:five_prime_UTR 25.0%
! TTACATTCTTTATCCAAACA+GGG + chr3_1:52761355-52761374 None:intergenic 25.0%
! AGCTTATGAAAACAACTTAT+AGG + chr3_1:52761460-52761479 None:intergenic 25.0%
! TCAAATAAGCCAATACAAAT+AGG - chr3_1:52761590-52761609 Msa0362000:intron 25.0%
! TTGGAGTAGAAGATATAAAT+AGG + chr3_1:52761636-52761655 None:intergenic 25.0%
!! CTTTTGTATTTCATTGATGT+AGG - chr3_1:52761875-52761894 Msa0362000:five_prime_UTR 25.0%
! TAGTTATAAAAAAAGAAGGG+AGG + chr3_1:52762056-52762075 None:intergenic 25.0%
! TAATTACTACCAATTTGTCA+TGG + chr3_1:52762194-52762213 None:intergenic 25.0%
!!! TTGAAAAGGTGCTTATTTTT+AGG - chr3_1:52762279-52762298 Msa0362000:intron 25.0%
!!! TGAAAAGGTGCTTATTTTTA+GGG - chr3_1:52762280-52762299 Msa0362000:intron 25.0%
!!! TTAGGGACAATATTTTTAAG+AGG - chr3_1:52762297-52762316 Msa0362000:intron 25.0%
!!! AGATTCAACTTTTTGATTGT+AGG - chr3_1:52762418-52762437 Msa0362000:intron 25.0%
! ATTCCAAAATACATTTCTGT+CGG - chr3_1:52762877-52762896 Msa0362000:five_prime_UTR 25.0%
!!! TGTTCAGTTTTATTCTTTTG+AGG - chr3_1:52762909-52762928 Msa0362000:five_prime_UTR 25.0%
! AGAAAATCTCCAATATTTGA+TGG - chr3_1:52763003-52763022 Msa0362000:five_prime_UTR 25.0%
!!! ATTTTTGAATTTTGGAGACT+CGG + chr3_1:52763040-52763059 None:intergenic 25.0%
! TTTCAGGAAAATCGTTTAAA+CGG - chr3_1:52763145-52763164 Msa0362000:five_prime_UTR 25.0%
! TGATGTATTGTTTGATCATA+AGG + chr3_1:52763351-52763370 None:intergenic 25.0%
! AATTGAGCAACTAAATCAAT+TGG - chr3_1:52763610-52763629 Msa0362000:five_prime_UTR 25.0%
!!! TTGTCTATAGAAATTTTGAC+TGG + chr3_1:52764093-52764112 None:intergenic 25.0%
! TCAAGAAAAATATGATGACT+TGG - chr3_1:52764396-52764415 Msa0362000:five_prime_UTR 25.0%
! GGAGTCAAAATTATTGAAAA+AGG - chr3_1:52764562-52764581 Msa0362000:five_prime_UTR 25.0%
! TACTCCAGTAATTACTAAAT+TGG + chr3_1:52765169-52765188 None:intergenic 25.0%
!! ATTTTACAATGCTTTCACTT+AGG + chr3_1:52765301-52765320 None:intergenic 25.0%
TATGAAGAAAGGAAAAAAGG+AGG + chr3_1:52757780-52757799 None:intergenic 30.0%
! TGGATTCAAGTTCAAGTTTA+AGG + chr3_1:52757988-52758007 None:intergenic 30.0%
TCTCAATCATATAATGCTGA+AGG - chr3_1:52758574-52758593 Msa0362000:CDS 30.0%
! GCTGCAATTGATAGTAAAAA+TGG - chr3_1:52758778-52758797 Msa0362000:five_prime_UTR 30.0%
AAAGACTGTTCATGAGTTAA+TGG + chr3_1:52758889-52758908 None:intergenic 30.0%
ATTAACTCATGAACAGTCTT+TGG - chr3_1:52758888-52758907 Msa0362000:five_prime_UTR 30.0%
! TTTGGAGTTGTTCAATAAGA+AGG - chr3_1:52758906-52758925 Msa0362000:five_prime_UTR 30.0%
TAGAGAAAAATGTGTTTGAG+TGG - chr3_1:52759052-52759071 Msa0362000:five_prime_UTR 30.0%
AAGACAGATTCACATCTAAT+TGG - chr3_1:52759108-52759127 Msa0362000:five_prime_UTR 30.0%
AGACAGATTCACATCTAATT+GGG - chr3_1:52759109-52759128 Msa0362000:five_prime_UTR 30.0%
! TCAAATCCTCATTCTTTTCA+CGG + chr3_1:52759422-52759441 None:intergenic 30.0%
!! AAATCCTCGTCCTATTTTAA+AGG - chr3_1:52759588-52759607 Msa0362000:intron 30.0%
CTCTAAGTATAGGTTATTGA+AGG - chr3_1:52759614-52759633 Msa0362000:intron 30.0%
! TTGAAGGTTCTTGATTTTGA+AGG - chr3_1:52759630-52759649 Msa0362000:intron 30.0%
AGAAAGCTAAGACATCTTAT+CGG - chr3_1:52759834-52759853 Msa0362000:five_prime_UTR 30.0%
GTTGATGTTCATAAGGAAAA+TGG - chr3_1:52760005-52760024 Msa0362000:five_prime_UTR 30.0%
! GTGTTGCATTTCATTGATTA+AGG + chr3_1:52760045-52760064 None:intergenic 30.0%
AATCAAATTCAACTCAACGA+AGG + chr3_1:52760105-52760124 None:intergenic 30.0%
!!! GAAAGTTTTTGAAGCATAGT+TGG + chr3_1:52760134-52760153 None:intergenic 30.0%
TCAAAAACTTTCGCTAAAAC+GGG - chr3_1:52760142-52760161 Msa0362000:five_prime_UTR 30.0%
TCTTCAAAATCTTACTGTGT+TGG - chr3_1:52760196-52760215 Msa0362000:five_prime_UTR 30.0%
AGTGGATCTTTATCTGAATA+CGG + chr3_1:52760233-52760252 None:intergenic 30.0%
!! AAACTTTTTAGTGATTGCAG+TGG + chr3_1:52760251-52760270 None:intergenic 30.0%
!! TCACATTTGCATTTTCAAGA+TGG - chr3_1:52760317-52760336 Msa0362000:five_prime_UTR 30.0%
AATCTGAAGAATATACCAAC+TGG - chr3_1:52760455-52760474 Msa0362000:intron 30.0%
AGCTTGAAGTTCTCTATATT+TGG - chr3_1:52760495-52760514 Msa0362000:intron 30.0%
GCTTGAAGTTCTCTATATTT+GGG - chr3_1:52760496-52760515 Msa0362000:intron 30.0%
CTTGAAGTTCTCTATATTTG+GGG - chr3_1:52760497-52760516 Msa0362000:intron 30.0%
! TATAACCCTTTGTTGTGATT+TGG - chr3_1:52760786-52760805 Msa0362000:intron 30.0%
AGAAATGGTCTATATTACAG+GGG + chr3_1:52760918-52760937 None:intergenic 30.0%
CAGAAATGGTCTATATTACA+GGG + chr3_1:52760919-52760938 None:intergenic 30.0%
! GTTTCATTAACTGATTCTTC+AGG - chr3_1:52761164-52761183 Msa0362000:five_prime_UTR 30.0%
GTTACATTCTTTATCCAAAC+AGG + chr3_1:52761356-52761375 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr3_1:52761499-52761518 Msa0362000:intron 30.0%
! CATTTAAGGCCTATTTGTAT+TGG + chr3_1:52761602-52761621 None:intergenic 30.0%
AGGAAATGAGAAGTCATTTA+AGG + chr3_1:52761616-52761635 None:intergenic 30.0%
AAAGAAAACAATCAAGGTGA+TGG + chr3_1:52761849-52761868 None:intergenic 30.0%
TCTAACTTTCCATGACAAAT+TGG - chr3_1:52762182-52762201 Msa0362000:intron 30.0%
TTAAGAGGAGGTTTATCATT+AGG - chr3_1:52762312-52762331 Msa0362000:intron 30.0%
TAAGAGGAGGTTTATCATTA+GGG - chr3_1:52762313-52762332 Msa0362000:intron 30.0%
TTGTCTGTCTATAGAGTAAT+AGG - chr3_1:52762372-52762391 Msa0362000:intron 30.0%
!! AGTAATTGGCTTGTTTCTAA+TGG + chr3_1:52762493-52762512 None:intergenic 30.0%
CTGTTTCAATTAAAAAGTCC+AGG + chr3_1:52762574-52762593 None:intergenic 30.0%
!! TTTGTGTTTTCTTTGGTTCA+GGG - chr3_1:52762622-52762641 Msa0362000:five_prime_UTR 30.0%
ACTGGTGTATCTGTAAATAT+CGG - chr3_1:52762793-52762812 Msa0362000:five_prime_UTR 30.0%
AGTTAGATAGTTCATGTGAA+GGG - chr3_1:52762854-52762873 Msa0362000:five_prime_UTR 30.0%
! GTTTAAACGATTTTCCTGAA+AGG + chr3_1:52763146-52763165 None:intergenic 30.0%
TTCAGGAAAATCGTTTAAAC+GGG - chr3_1:52763146-52763165 Msa0362000:five_prime_UTR 30.0%
ATATAGTGAATGACCATTTG+CGG + chr3_1:52763929-52763948 None:intergenic 30.0%
!! ACATCTCTTTTGATTCAACT+GGG - chr3_1:52764004-52764023 Msa0362000:five_prime_UTR 30.0%
! GTGTATTTTCTCACGATAAT+AGG - chr3_1:52764160-52764179 Msa0362000:five_prime_UTR 30.0%
CACTAAAAAGACCTGTTAAT+GGG - chr3_1:52764341-52764360 Msa0362000:five_prime_UTR 30.0%
! GAAGTTGTATTTTCAAACAC+TGG + chr3_1:52764592-52764611 None:intergenic 30.0%
! TCTGTATTGTGTTTTCTACT+CGG + chr3_1:52764851-52764870 None:intergenic 30.0%
CAAGATATTAGAAGGATGAA+TGG + chr3_1:52765230-52765249 None:intergenic 30.0%
TTTGACTCAAATGGCAGAAA+TGG - chr3_1:52757877-52757896 Msa0362000:three_prime_UTR 35.0%
TCAGAATTCAATCTGCTCAA+AGG - chr3_1:52757941-52757960 Msa0362000:three_prime_UTR 35.0%
GATGAGTATATGATCCATGT+AGG - chr3_1:52758130-52758149 Msa0362000:CDS 35.0%
TGAAGTAAAGCTACAAATCC+AGG + chr3_1:52758172-52758191 None:intergenic 35.0%
CCATTAAGTCATCTGTTTGT+GGG - chr3_1:52758242-52758261 Msa0362000:CDS 35.0%
ATTAAGGAAGCTGATGTTGT+AGG - chr3_1:52758379-52758398 Msa0362000:intron 35.0%
! TTGATTTGATGGTAAAGGGA+AGG - chr3_1:52758428-52758447 Msa0362000:CDS 35.0%
! TGATTTGATGGTAAAGGGAA+GGG - chr3_1:52758429-52758448 Msa0362000:CDS 35.0%
AAAAACATTCTTGGCTAGAG+TGG + chr3_1:52758503-52758522 None:intergenic 35.0%
! CTTGCTGTCAAAAACATTCT+TGG + chr3_1:52758512-52758531 None:intergenic 35.0%
!! CAAGAATGTTTTTGACAGCA+AGG - chr3_1:52758510-52758529 Msa0362000:CDS 35.0%
! TTTTGACAGCAAGGATATCA+TGG - chr3_1:52758519-52758538 Msa0362000:CDS 35.0%
TTTGACAGCAAGGATATCAT+GGG - chr3_1:52758520-52758539 Msa0362000:CDS 35.0%
GATTTGCAAACAAAAAGGAG+TGG - chr3_1:52758621-52758640 Msa0362000:CDS 35.0%
! AGGGTATTTCTCAAATGGAT+CGG - chr3_1:52758653-52758672 Msa0362000:CDS 35.0%
GAAATTACTTGCAGAATTCG+AGG - chr3_1:52758698-52758717 Msa0362000:five_prime_UTR 35.0%
!! TTGTGGTGTTTGATGATGTT+TGG - chr3_1:52758725-52758744 Msa0362000:five_prime_UTR 35.0%
GTAGGATACTTGTAACAACA+AGG - chr3_1:52758803-52758822 Msa0362000:five_prime_UTR 35.0%
TGTTGTCCAAAAGAACTCAT+TGG - chr3_1:52758952-52758971 Msa0362000:five_prime_UTR 35.0%
! GCTATACCAATGAGTTCTTT+TGG + chr3_1:52758961-52758980 None:intergenic 35.0%
TATAGATAAAAGTCCACCGA+CGG + chr3_1:52759031-52759050 None:intergenic 35.0%
! AAGCCATGCTTCTTGTATTT+TGG - chr3_1:52759180-52759199 Msa0362000:intron 35.0%
ACTCCAAAATACAAGAAGCA+TGG + chr3_1:52759186-52759205 None:intergenic 35.0%
GTATCCTCTCTTAGAATTGA+TGG - chr3_1:52759351-52759370 Msa0362000:five_prime_UTR 35.0%
! TTTGCCATCAATTCTAAGAG+AGG + chr3_1:52759358-52759377 None:intergenic 35.0%
TATGATCCGTGAAAAGAATG+AGG - chr3_1:52759413-52759432 Msa0362000:intron 35.0%
GATCCTTTAGTGGAATAGTT+CGG - chr3_1:52759475-52759494 Msa0362000:five_prime_UTR 35.0%
! CGTCAATGGTTGTTATTGAT+AGG + chr3_1:52759503-52759522 None:intergenic 35.0%
AACCATTGACGATGCTTTAT+GGG - chr3_1:52759512-52759531 Msa0362000:five_prime_UTR 35.0%
! GTATTGATGGATCTCATGTT+CGG - chr3_1:52759538-52759557 Msa0362000:intron 35.0%
!! GTTCGGTCACTATTTTGTTT+TGG - chr3_1:52759555-52759574 Msa0362000:intron 35.0%
!! GATTCCTTTAAAATAGGACG+AGG + chr3_1:52759595-52759614 None:intergenic 35.0%
!! ATCTAGATACCTTGGTTCTA+AGG - chr3_1:52759769-52759788 Msa0362000:five_prime_UTR 35.0%
!! TCTAGATACCTTGGTTCTAA+GGG - chr3_1:52759770-52759789 Msa0362000:five_prime_UTR 35.0%
AACATAACGAAGAGTCTGTA+GGG + chr3_1:52759910-52759929 None:intergenic 35.0%
AAACATAACGAAGAGTCTGT+AGG + chr3_1:52759911-52759930 None:intergenic 35.0%
!!! AGTTTTTGAAGCATAGTTGG+TGG + chr3_1:52760131-52760150 None:intergenic 35.0%
CAAAAACTTTCGCTAAAACG+GGG - chr3_1:52760143-52760162 Msa0362000:five_prime_UTR 35.0%
AAAAACTTTCGCTAAAACGG+GGG - chr3_1:52760144-52760163 Msa0362000:five_prime_UTR 35.0%
TGAAGATCTAACATCCATTC+TGG + chr3_1:52760182-52760201 None:intergenic 35.0%
TTACTGTGTTGGAATTGATG+TGG - chr3_1:52760207-52760226 Msa0362000:five_prime_UTR 35.0%
TATAGAAAACTAGCCCTTTG+TGG + chr3_1:52760770-52760789 None:intergenic 35.0%
ACCTACCAAATCACAACAAA+GGG + chr3_1:52760794-52760813 None:intergenic 35.0%
CCAGAAATGGTCTATATTAC+AGG + chr3_1:52760920-52760939 None:intergenic 35.0%
CCTGTAATATAGACCATTTC+TGG - chr3_1:52760917-52760936 Msa0362000:intron 35.0%
TAAACTACTGAAACCCTTTG+TGG + chr3_1:52761193-52761212 None:intergenic 35.0%
AAGAAATCGTTATCTCAGCT+TGG - chr3_1:52761309-52761328 Msa0362000:intron 35.0%
AGAAATCGTTATCTCAGCTT+GGG - chr3_1:52761310-52761329 Msa0362000:intron 35.0%
TTTCATAAGCTATCCTAGAG+AGG - chr3_1:52761469-52761488 Msa0362000:intron 35.0%
CTTATTTCCATAACCTCTCT+AGG + chr3_1:52761485-52761504 None:intergenic 35.0%
GAGCTTACGGAAAAAACATT+TGG + chr3_1:52761530-52761549 None:intergenic 35.0%
AGACTGTTTAGTAGAGCTTA+CGG + chr3_1:52761543-52761562 None:intergenic 35.0%
ATCTTCTACTCCAACATGTT+TGG - chr3_1:52761642-52761661 Msa0362000:intron 35.0%
AAAAACCCATCCAAACATGT+TGG + chr3_1:52761655-52761674 None:intergenic 35.0%
TCATTGATGTAGGCATTTAG+TGG - chr3_1:52761885-52761904 Msa0362000:intron 35.0%
!! GGGACAATATTTTTAAGAGG+AGG - chr3_1:52762300-52762319 Msa0362000:intron 35.0%
AGGTTTATCATTAGGGACAA+AGG - chr3_1:52762320-52762339 Msa0362000:intron 35.0%
TGGTAAAATCCAACACTTGA+AGG - chr3_1:52762542-52762561 Msa0362000:five_prime_UTR 35.0%
! GCAAGTCTTTGTGTTTTCTT+TGG - chr3_1:52762615-52762634 Msa0362000:five_prime_UTR 35.0%
!! CTTTGTGTTTTCTTTGGTTC+AGG - chr3_1:52762621-52762640 Msa0362000:five_prime_UTR 35.0%
GAACTTATTAGAGTGAAGGT+TGG - chr3_1:52762646-52762665 Msa0362000:five_prime_UTR 35.0%
AGTTAGATAGGAGTAGAGAA+CGG + chr3_1:52762762-52762781 None:intergenic 35.0%
!! TATCTAACTCATCGATTTGC+TGG + chr3_1:52762843-52762862 None:intergenic 35.0%
GAGTTAGATAGTTCATGTGA+AGG - chr3_1:52762853-52762872 Msa0362000:five_prime_UTR 35.0%
! TCACCGACAGAAATGTATTT+TGG + chr3_1:52762883-52762902 None:intergenic 35.0%
ACAGGTGAAGAAAATTCTGT+TGG - chr3_1:52762955-52762974 Msa0362000:five_prime_UTR 35.0%
AACTCTGGTCCATCAAATAT+TGG + chr3_1:52763015-52763034 None:intergenic 35.0%
AAATAACCAAAGGAAAAGCG+TGG - chr3_1:52763056-52763075 Msa0362000:five_prime_UTR 35.0%
!!! GCTTTTTCATCGAGTTATCT+AGG - chr3_1:52763078-52763097 Msa0362000:five_prime_UTR 35.0%
! GTTTCTGAGAGTTCAACTTT+CGG - chr3_1:52763114-52763133 Msa0362000:five_prime_UTR 35.0%
! TTTCTGAGAGTTCAACTTTC+GGG - chr3_1:52763115-52763134 Msa0362000:five_prime_UTR 35.0%
TCAGGAAAATCGTTTAAACG+GGG - chr3_1:52763147-52763166 Msa0362000:five_prime_UTR 35.0%
ATGCAAACTTCATTACAGTC+AGG - chr3_1:52763177-52763196 Msa0362000:five_prime_UTR 35.0%
TGATTATCACCAACTGAACT+CGG - chr3_1:52763248-52763267 Msa0362000:five_prime_UTR 35.0%
TGTCAAAGTTAAACAGCCAA+AGG + chr3_1:52763301-52763320 None:intergenic 35.0%
GATAATGTGCATTTGTTTCC+AGG - chr3_1:52763686-52763705 Msa0362000:five_prime_UTR 35.0%
! TTGTTTCCAGGTTGAGAAAT+TGG - chr3_1:52763698-52763717 Msa0362000:five_prime_UTR 35.0%
TATAAAGGCTATCCAGATGA+CGG - chr3_1:52763840-52763859 Msa0362000:five_prime_UTR 35.0%
!! TTTGTTATTTGCAGCTTCTG+AGG - chr3_1:52763896-52763915 Msa0362000:five_prime_UTR 35.0%
!! TTGTTATTTGCAGCTTCTGA+GGG - chr3_1:52763897-52763916 Msa0362000:five_prime_UTR 35.0%
!! GACATCTCTTTTGATTCAAC+TGG - chr3_1:52764003-52764022 Msa0362000:five_prime_UTR 35.0%
TCAAGGAAATTCAGAGTCTT+AGG - chr3_1:52764040-52764059 Msa0362000:five_prime_UTR 35.0%
TCCATACAACTGCAAAAAAG+TGG - chr3_1:52764138-52764157 Msa0362000:five_prime_UTR 35.0%
!!! ACCACTTTTTTGCAGTTGTA+TGG + chr3_1:52764142-52764161 None:intergenic 35.0%
TTCTCACGATAATAGGAATG+AGG - chr3_1:52764167-52764186 Msa0362000:five_prime_UTR 35.0%
TGGAAAATGAAAGAGAGAGA+TGG - chr3_1:52764193-52764212 Msa0362000:five_prime_UTR 35.0%
TGAACTGAAGTTAGAGAAGA+AGG - chr3_1:52764297-52764316 Msa0362000:five_prime_UTR 35.0%
GCACTAAAAAGACCTGTTAA+TGG - chr3_1:52764340-52764359 Msa0362000:five_prime_UTR 35.0%
TTCTAAGCATGATGCTATGA+TGG - chr3_1:52764427-52764446 Msa0362000:five_prime_UTR 35.0%
GGAGCAAACAAGATATTAGA+AGG + chr3_1:52765238-52765257 None:intergenic 35.0%
TTCATGATTGCAACAAAGAC+GGG + chr3_1:52765259-52765278 None:intergenic 35.0%
CTTCATGATTGCAACAAAGA+CGG + chr3_1:52765260-52765279 None:intergenic 35.0%
ATGTTAACAACGGAAGCAGT+TGG + chr3_1:52757922-52757941 None:intergenic 40.0%
! TCTATCAGCATCTTTGAGGA+AGG + chr3_1:52758017-52758036 None:intergenic 40.0%
CTCTTCTATCAGCATCTTTG+AGG + chr3_1:52758021-52758040 None:intergenic 40.0%
GATAGAAGAGCTAAAGCTGA+AGG - chr3_1:52758031-52758050 Msa0362000:exon 40.0%
TAGTGAAGGAGCCAAAACAT+GGG - chr3_1:52758063-52758082 Msa0362000:CDS 40.0%
!! AACTTGCTTCACCCATGTTT+TGG + chr3_1:52758077-52758096 None:intergenic 40.0%
AAACATGGGTGAAGCAAGTT+AGG - chr3_1:52758077-52758096 Msa0362000:CDS 40.0%
AACATGGGTGAAGCAAGTTA+GGG - chr3_1:52758078-52758097 Msa0362000:CDS 40.0%
GCCATTAAGTCATCTGTTTG+TGG - chr3_1:52758241-52758260 Msa0362000:CDS 40.0%
CCCACAAACAGATGACTTAA+TGG + chr3_1:52758245-52758264 None:intergenic 40.0%
!! TTCCAACGTTCTCTAGAACA+AGG - chr3_1:52758292-52758311 Msa0362000:intron 40.0%
!! ATCCTTGTTCTAGAGAACGT+TGG + chr3_1:52758297-52758316 None:intergenic 40.0%
GACACTTTGATTGTCGTGTA+TGG - chr3_1:52758542-52758561 Msa0362000:CDS 40.0%
ATTTGAGAAATACCCTCAGG+AGG + chr3_1:52758649-52758668 None:intergenic 40.0%
!! TCCTGAGGGTATTTCTCAAA+TGG - chr3_1:52758648-52758667 Msa0362000:CDS 40.0%
TCCATTTGAGAAATACCCTC+AGG + chr3_1:52758652-52758671 None:intergenic 40.0%
GGGTATTTCTCAAATGGATC+GGG - chr3_1:52758654-52758673 Msa0362000:CDS 40.0%
ACTTGTAACAACAAGGAACC+AGG - chr3_1:52758810-52758829 Msa0362000:five_prime_UTR 40.0%
TACAAGAATCCACAACTTCC+TGG + chr3_1:52758831-52758850 None:intergenic 40.0%
TTGCAAGTCAAGCATCTCAA+TGG + chr3_1:52758866-52758885 None:intergenic 40.0%
AAGCATGGCTTGAGATAGTA+AGG + chr3_1:52759171-52759190 None:intergenic 40.0%
GATAGCTGAAGGGTTTGTAA+AGG - chr3_1:52759254-52759273 Msa0362000:intron 40.0%
AGGGTTTGTAAAGGAGGAAA+AGG - chr3_1:52759263-52759282 Msa0362000:intron 40.0%
GGGTTTGTAAAGGAGGAAAA+GGG - chr3_1:52759264-52759283 Msa0362000:intron 40.0%
GGTTTGTAAAGGAGGAAAAG+GGG - chr3_1:52759265-52759284 Msa0362000:intron 40.0%
ATACTTGAACGAGGCTTCTA+TGG + chr3_1:52759335-52759354 None:intergenic 40.0%
TAAGAGAGGATACTTGAACG+AGG + chr3_1:52759344-52759363 None:intergenic 40.0%
TGCAAGCATATCAGTGATGA+TGG - chr3_1:52759447-52759466 Msa0362000:intron 40.0%
GATGGACAAAGATCCTTTAG+TGG - chr3_1:52759465-52759484 Msa0362000:five_prime_UTR 40.0%
CAACCATTGACGATGCTTTA+TGG - chr3_1:52759511-52759530 Msa0362000:five_prime_UTR 40.0%
! GCTTTATGGGAGTGTATTGA+TGG - chr3_1:52759525-52759544 Msa0362000:five_prime_UTR 40.0%
GTTGAAGTCCCTAAATCGAT+TGG - chr3_1:52759735-52759754 Msa0362000:five_prime_UTR 40.0%
! GAACCAAGGTATCTAGATTC+TGG + chr3_1:52759767-52759786 None:intergenic 40.0%
!! CTAGATACCTTGGTTCTAAG+GGG - chr3_1:52759771-52759790 Msa0362000:five_prime_UTR 40.0%
! TTGAGTTGCCAAAGGAGATT+AGG - chr3_1:52759805-52759824 Msa0362000:five_prime_UTR 40.0%
CTAAGCTTCCTAATCTCCTT+TGG + chr3_1:52759816-52759835 None:intergenic 40.0%
TAGGAAAGCTGAAGCTGATA+AGG - chr3_1:52759970-52759989 Msa0362000:five_prime_UTR 40.0%
AGGAAAGCTGAAGCTGATAA+GGG - chr3_1:52759971-52759990 Msa0362000:five_prime_UTR 40.0%
CTGAAGCTGATAAGGGATTT+GGG - chr3_1:52759978-52759997 Msa0362000:five_prime_UTR 40.0%
TGAAGCTGATAAGGGATTTG+GGG - chr3_1:52759979-52759998 Msa0362000:five_prime_UTR 40.0%
GGTTAAAGGAGTTTCCAGAA+TGG - chr3_1:52760165-52760184 Msa0362000:five_prime_UTR 40.0%
! AGTTCTCTATATTTGGGGTG+TGG - chr3_1:52760502-52760521 Msa0362000:intron 40.0%
CATGATCCAATTCCAATCCT+CGG + chr3_1:52760555-52760574 None:intergenic 40.0%
TAACTCAGCATCGCCAATTA+TGG - chr3_1:52760742-52760761 Msa0362000:intron 40.0%
GCCAATTATGGATCCACAAA+GGG - chr3_1:52760754-52760773 Msa0362000:intron 40.0%
!! ACCCTTTGTTGTGATTTGGT+AGG - chr3_1:52760790-52760809 Msa0362000:intron 40.0%
CACCTACCAAATCACAACAA+AGG + chr3_1:52760795-52760814 None:intergenic 40.0%
!! TGTTGTGATTTGGTAGGTGA+TGG - chr3_1:52760796-52760815 Msa0362000:intron 40.0%
ACAGGGTGTAAAACCAGAAA+TGG + chr3_1:52760933-52760952 None:intergenic 40.0%
AACACTATCCCCATCTAATC+CGG + chr3_1:52761247-52761266 None:intergenic 40.0%
!! ATGGGGATAGTGTTGACAAT+GGG - chr3_1:52761253-52761272 Msa0362000:intron 40.0%
AAGCTATCCTAGAGAGGTTA+TGG - chr3_1:52761475-52761494 Msa0362000:intron 40.0%
TCTACTCCAACATGTTTGGA+TGG - chr3_1:52761646-52761665 Msa0362000:intron 40.0%
CTACTCCAACATGTTTGGAT+GGG - chr3_1:52761647-52761666 Msa0362000:intron 40.0%
!! CTTCTTTGAAGAGCATTGTC+CGG - chr3_1:52761779-52761798 Msa0362000:five_prime_UTR 40.0%
!! AACAATCAAGGTGATGGACT+TGG + chr3_1:52761843-52761862 None:intergenic 40.0%
! GCATTTAGTGGATGCTCTTA+CGG - chr3_1:52761897-52761916 Msa0362000:intron 40.0%
TTGTAGCAATCGAGTCAAAC+AGG + chr3_1:52761968-52761987 None:intergenic 40.0%
AGTTTAGCATTTCCACCAAG+TGG + chr3_1:52761994-52762013 None:intergenic 40.0%
!! GAGGTAGTACTTGTTATGAG+GGG + chr3_1:52762037-52762056 None:intergenic 40.0%
!! GGAGGTAGTACTTGTTATGA+GGG + chr3_1:52762038-52762057 None:intergenic 40.0%
GGACAAAGGTAGTATTTACC+TGG - chr3_1:52762334-52762353 Msa0362000:intron 40.0%
CAAACTATGCTCTTTGATCC+AGG + chr3_1:52762355-52762374 None:intergenic 40.0%
ACAGTTTGCACACTCAGATT+TGG - chr3_1:52762453-52762472 Msa0362000:five_prime_UTR 40.0%
CAGTTTGCACACTCAGATTT+GGG - chr3_1:52762454-52762473 Msa0362000:five_prime_UTR 40.0%
AGTTTGCACACTCAGATTTG+GGG - chr3_1:52762455-52762474 Msa0362000:five_prime_UTR 40.0%
AGGAGTTTACCTTCAAGTGT+TGG + chr3_1:52762554-52762573 None:intergenic 40.0%
AACACTTGAAGGTAAACTCC+TGG - chr3_1:52762553-52762572 Msa0362000:five_prime_UTR 40.0%
GGGAGAACTTATTAGAGTGA+AGG - chr3_1:52762642-52762661 Msa0362000:five_prime_UTR 40.0%
GTCATGTTCATAGCTCAGTT+GGG - chr3_1:52762668-52762687 Msa0362000:five_prime_UTR 40.0%
TCATGTTCATAGCTCAGTTG+GGG - chr3_1:52762669-52762688 Msa0362000:five_prime_UTR 40.0%
TGTATCTGTAAATATCGGCG+AGG - chr3_1:52762798-52762817 Msa0362000:five_prime_UTR 40.0%
TATGATGCAGACACAACTAC+AGG - chr3_1:52762937-52762956 Msa0362000:five_prime_UTR 40.0%
! AAAAAGCCACGCTTTTCCTT+TGG + chr3_1:52763065-52763084 None:intergenic 40.0%
CATCGAGTTATCTAGGAAGT+AGG - chr3_1:52763085-52763104 Msa0362000:five_prime_UTR 40.0%
CAATTATCTGTAATCCCCTC+TGG + chr3_1:52763230-52763249 None:intergenic 40.0%
! TCTTCAAGCTCGTTTTCCTT+TGG - chr3_1:52763282-52763301 Msa0362000:five_prime_UTR 40.0%
AAATGCTTCGAGAGCGAAAA+AGG + chr3_1:52763518-52763537 None:intergenic 40.0%
!! TTTTTCGCTCTCGAAGCATT+TGG - chr3_1:52763517-52763536 Msa0362000:five_prime_UTR 40.0%
! GAAGCATTTGGAAAGTGTGA+GGG - chr3_1:52763529-52763548 Msa0362000:five_prime_UTR 40.0%
TCCTTCCTGAATTACGTTTG+TGG - chr3_1:52763645-52763664 Msa0362000:five_prime_UTR 40.0%
! TTCCAGGTTGAGAAATTGGA+AGG - chr3_1:52763702-52763721 Msa0362000:five_prime_UTR 40.0%
! TGAAGAGTATAGCTCCATGA+AGG - chr3_1:52763764-52763783 Msa0362000:five_prime_UTR 40.0%
CTCCATGAAGGATGAAAACA+AGG - chr3_1:52763776-52763795 Msa0362000:five_prime_UTR 40.0%
!!! GACCTTGTTTTCATCCTTCA+TGG + chr3_1:52763781-52763800 None:intergenic 40.0%
AATCAGAACAAACCGTCATC+TGG + chr3_1:52763855-52763874 None:intergenic 40.0%
! TGTTATTTGCAGCTTCTGAG+GGG - chr3_1:52763898-52763917 Msa0362000:five_prime_UTR 40.0%
CTCTCTGATCTAACTCTTCT+AGG + chr3_1:52763984-52764003 None:intergenic 40.0%
TGGGAAAGAATCACTACTCA+AGG - chr3_1:52764023-52764042 Msa0362000:five_prime_UTR 40.0%
AAGAGAGAGATGGACAGAAA+TGG - chr3_1:52764203-52764222 Msa0362000:five_prime_UTR 40.0%
GAAGAAGGTTACAGAAGAGA+TGG - chr3_1:52764312-52764331 Msa0362000:five_prime_UTR 40.0%
ATTCTTGCATGCCCATTAAC+AGG + chr3_1:52764355-52764374 None:intergenic 40.0%
! TGTTAATGGGCATGCAAGAA+TGG - chr3_1:52764354-52764373 Msa0362000:five_prime_UTR 40.0%
! AAGCATGATGCTATGATGGA+AGG - chr3_1:52764431-52764450 Msa0362000:five_prime_UTR 40.0%
! AGCATGATGCTATGATGGAA+GGG - chr3_1:52764432-52764451 Msa0362000:five_prime_UTR 40.0%
GTGGCAAAAGCCTCAAAAAA+AGG - chr3_1:52764476-52764495 Msa0362000:five_prime_UTR 40.0%
!!! GCGTGCTTTACCTTTTTTTG+AGG + chr3_1:52764489-52764508 None:intergenic 40.0%
AAGCTCAGCAGAAAGAGATT+TGG + chr3_1:52764516-52764535 None:intergenic 40.0%
TCAGAATCCTCTTGATACAG+TGG + chr3_1:52764932-52764951 None:intergenic 40.0%
TGCTTGGTCATCATAAGCAT+AGG + chr3_1:52764981-52765000 None:intergenic 40.0%
ATGCTTATGATGACCAAGCA+TGG - chr3_1:52764981-52765000 Msa0362000:five_prime_UTR 40.0%
AGAATTCGGAGCGATATATC+AGG - chr3_1:52765009-52765028 Msa0362000:five_prime_UTR 40.0%
TAGATCCTACTTGGATCGAA+AGG - chr3_1:52765078-52765097 Msa0362000:five_prime_UTR 40.0%
CAATGCTTTCACTTAGGCAA+AGG + chr3_1:52765295-52765314 None:intergenic 40.0%
GACACGCTTCGTAGATTTAG+TGG - chr3_1:52757743-52757762 Msa0362000:three_prime_UTR 45.0%
GGCAGAAATGGCAGTTTCTT+TGG - chr3_1:52757889-52757908 Msa0362000:three_prime_UTR 45.0%
!! TCTGCTCAAAGGTGTTCACA+AGG - chr3_1:52757952-52757971 Msa0362000:three_prime_UTR 45.0%
! ATCTTTGAGGAAGGCTCTGA+TGG + chr3_1:52758008-52758027 None:intergenic 45.0%
GAAGGAGACAACACTAGTGA+AGG - chr3_1:52758049-52758068 Msa0362000:CDS 45.0%
CTAGTGAAGGAGCCAAAACA+TGG - chr3_1:52758062-52758081 Msa0362000:CDS 45.0%
ACTCGCTGCTCTCTACATTA+AGG - chr3_1:52758363-52758382 Msa0362000:intron 45.0%
TGTGGTTTCTGTGGTAGGAA+TGG - chr3_1:52758462-52758481 Msa0362000:CDS 45.0%
GTGGTTTCTGTGGTAGGAAT+GGG - chr3_1:52758463-52758482 Msa0362000:CDS 45.0%
TTTCTGTGGTAGGAATGGGA+GGG - chr3_1:52758467-52758486 Msa0362000:CDS 45.0%
AACAAGGAACCAGGAAGTTG+TGG - chr3_1:52758819-52758838 Msa0362000:five_prime_UTR 45.0%
ACTCGACAATGGATAGCTGA+AGG - chr3_1:52759243-52759262 Msa0362000:intron 45.0%
CTCGACAATGGATAGCTGAA+GGG - chr3_1:52759244-52759263 Msa0362000:intron 45.0%
AGCTGAAGGGTTTGTAAAGG+AGG - chr3_1:52759257-52759276 Msa0362000:intron 45.0%
! ACTTTGGAAGAAGTGGCAGA+AGG - chr3_1:52759291-52759310 Msa0362000:five_prime_UTR 45.0%
!! CTCCCATAAAGCATCGTCAA+TGG + chr3_1:52759517-52759536 None:intergenic 45.0%
! GGAGCATGCCAATCGATTTA+GGG + chr3_1:52759746-52759765 None:intergenic 45.0%
! TGGAGCATGCCAATCGATTT+AGG + chr3_1:52759747-52759766 None:intergenic 45.0%
GCTCCAGAATCTAGATACCT+TGG - chr3_1:52759761-52759780 Msa0362000:five_prime_UTR 45.0%
ATATGGACCCCTTAGAACCA+AGG + chr3_1:52759781-52759800 None:intergenic 45.0%
! GCAGAGGTAATTGAAGCGTT+AGG - chr3_1:52759951-52759970 Msa0362000:five_prime_UTR 45.0%
GCTGAAGCTGATAAGGGATT+TGG - chr3_1:52759977-52759996 Msa0362000:five_prime_UTR 45.0%
!! GGGGTTGGTTGATGTTCATA+AGG - chr3_1:52759998-52760017 Msa0362000:five_prime_UTR 45.0%
TTCGCTAAAACGGGGGTTAA+AGG - chr3_1:52760151-52760170 Msa0362000:five_prime_UTR 45.0%
CTTCAAGCTTCTCCAAGTGT+TGG + chr3_1:52760484-52760503 None:intergenic 45.0%
TGGGGTGTGGAAGATGAATT+TGG - chr3_1:52760515-52760534 Msa0362000:intron 45.0%
GGGGTGTGGAAGATGAATTT+GGG - chr3_1:52760516-52760535 Msa0362000:intron 45.0%
GGGTGTGGAAGATGAATTTG+GGG - chr3_1:52760517-52760536 Msa0362000:intron 45.0%
GTTCTACCGAGGATTGGAAT+TGG - chr3_1:52760546-52760565 Msa0362000:five_prime_UTR 45.0%
CGAGGATTGGAATTGGATCA+TGG - chr3_1:52760553-52760572 Msa0362000:five_prime_UTR 45.0%
CGCCAATTATGGATCCACAA+AGG - chr3_1:52760753-52760772 Msa0362000:intron 45.0%
GCCCTTTGTGGATCCATAAT+TGG + chr3_1:52760758-52760777 None:intergenic 45.0%
GACTTCAACTTCAAGTGCGA+TGG - chr3_1:52760818-52760837 Msa0362000:intron 45.0%
AGATTCTCCACGTGGACTTT+GGG - chr3_1:52760847-52760866 Msa0362000:intron 45.0%
! ATTCTTCAGGGCACCACAAA+GGG - chr3_1:52761177-52761196 Msa0362000:intron 45.0%
! ATCAGCCTTATCGATCTTGC+CGG - chr3_1:52761225-52761244 Msa0362000:intron 45.0%
CTAATCCGGCAAGATCGATA+AGG + chr3_1:52761233-52761252 None:intergenic 45.0%
! ATCGATCTTGCCGGATTAGA+TGG - chr3_1:52761234-52761253 Msa0362000:intron 45.0%
! TCGATCTTGCCGGATTAGAT+GGG - chr3_1:52761235-52761254 Msa0362000:intron 45.0%
!! GATGGGGATAGTGTTGACAA+TGG - chr3_1:52761252-52761271 Msa0362000:intron 45.0%
GTCTGCTTTCCCATAGACAT+TGG + chr3_1:52761284-52761303 None:intergenic 45.0%
TGGGTAAGATCCCATGACTT+AGG - chr3_1:52761329-52761348 Msa0362000:intron 45.0%
GCAACTTATCCACAAGTAGC+CGG + chr3_1:52761801-52761820 None:intergenic 45.0%
GTCAAACAGGAGTTACTGTG+TGG + chr3_1:52761955-52761974 None:intergenic 45.0%
CGATTGCTACAAGAACCACT+TGG - chr3_1:52761976-52761995 Msa0362000:intron 45.0%
TTGCTACAAGAACCACTTGG+TGG - chr3_1:52761979-52761998 Msa0362000:intron 45.0%
!! GTACTTGTTATGAGGGGAGA+TGG + chr3_1:52762031-52762050 None:intergenic 45.0%
!! GGGAGGTAGTACTTGTTATG+AGG + chr3_1:52762039-52762058 None:intergenic 45.0%
GGTCATGTTCATAGCTCAGT+TGG - chr3_1:52762667-52762686 Msa0362000:five_prime_UTR 45.0%
CATGTTCATAGCTCAGTTGG+GGG - chr3_1:52762670-52762689 Msa0362000:five_prime_UTR 45.0%
GCTTCCAAGGACATAACTTG+CGG - chr3_1:52762704-52762723 Msa0362000:five_prime_UTR 45.0%
! CTTCCAAGGACATAACTTGC+GGG - chr3_1:52762705-52762724 Msa0362000:five_prime_UTR 45.0%
TTTCCCGCAAGTTATGTCCT+TGG + chr3_1:52762711-52762730 None:intergenic 45.0%
ACTTTCGGGAATGACCTTTC+AGG - chr3_1:52763129-52763148 Msa0362000:five_prime_UTR 45.0%
GAGACTTTCTGCCAAAGACT+CGG + chr3_1:52763208-52763227 None:intergenic 45.0%
TTTGGCAGAAAGTCTCCAGA+GGG - chr3_1:52763212-52763231 Msa0362000:five_prime_UTR 45.0%
TGTTCAATGCCGAGTTCAGT+TGG + chr3_1:52763260-52763279 None:intergenic 45.0%
ACCATGTCCAGAAATCGACA+AGG - chr3_1:52763320-52763339 Msa0362000:five_prime_UTR 45.0%
!! ACCTTGTCGATTTCTGGACA+TGG + chr3_1:52763324-52763343 None:intergenic 45.0%
!! GGTTCAACCTTGTCGATTTC+TGG + chr3_1:52763330-52763349 None:intergenic 45.0%
CTGTACGACAAGATGCACAA+AGG + chr3_1:52763407-52763426 None:intergenic 45.0%
! CGAAGCATTTGGAAAGTGTG+AGG - chr3_1:52763528-52763547 Msa0362000:five_prime_UTR 45.0%
! TTGGAAAGTGTGAGGGCAAA+AGG - chr3_1:52763536-52763555 Msa0362000:five_prime_UTR 45.0%
GCCACAAACGTAATTCAGGA+AGG + chr3_1:52763649-52763668 None:intergenic 45.0%
TCCTGAATTACGTTTGTGGC+TGG - chr3_1:52763649-52763668 Msa0362000:five_prime_UTR 45.0%
CCTGAATTACGTTTGTGGCT+GGG - chr3_1:52763650-52763669 Msa0362000:five_prime_UTR 45.0%
CTCCTTCCAATTTCTCAACC+TGG + chr3_1:52763707-52763726 None:intergenic 45.0%
CGATAATAGGAATGAGGAGC+TGG - chr3_1:52764173-52764192 Msa0362000:five_prime_UTR 45.0%
GGACAGAAATGGAAAGCGAT+TGG - chr3_1:52764214-52764233 Msa0362000:five_prime_UTR 45.0%
! TATGATGGAAGGGATAGCTG+AGG - chr3_1:52764442-52764461 Msa0362000:five_prime_UTR 45.0%
ATTGAGGTTGGAGAGGGAAA+GGG - chr3_1:52764541-52764560 Msa0362000:five_prime_UTR 45.0%
ACAAGCAGCATATGTTGCAG+AGG - chr3_1:52764673-52764692 Msa0362000:five_prime_UTR 45.0%
AATTGCCAGAGTCTGCATTG+AGG - chr3_1:52764906-52764925 Msa0362000:five_prime_UTR 45.0%
ATTGAGGCCACTGTATCAAG+AGG - chr3_1:52764922-52764941 Msa0362000:five_prime_UTR 45.0%
CAAGCATGGAGAGCAGAATT+CGG - chr3_1:52764995-52765014 Msa0362000:five_prime_UTR 45.0%
ACTGCAATCACCTGTTTGTC+TGG - chr3_1:52765052-52765071 Msa0362000:five_prime_UTR 45.0%
GGATCTACTTCCAGACAAAC+AGG + chr3_1:52765065-52765084 None:intergenic 45.0%
GTCTGGAAGTAGATCCTACT+TGG - chr3_1:52765069-52765088 Msa0362000:five_prime_UTR 45.0%
!! TAAATAAAAAAAAAATTACA+GGG + chr3_1:52760950-52760969 None:intergenic 5.0%
!! ATAAAAAAATATATTTATAG+GGG + chr3_1:52760973-52760992 None:intergenic 5.0%
!! ATTTAGATATTTAATAATAT+AGG + chr3_1:52761140-52761159 None:intergenic 5.0%
!! TATTATTAAATATCTAAATA+TGG - chr3_1:52761141-52761160 Msa0362000:five_prime_UTR 5.0%
!! ATTATTAAATATCTAAATAT+GGG - chr3_1:52761142-52761161 Msa0362000:five_prime_UTR 5.0%
!!! ATTTTATTTTATACATATAA+AGG - chr3_1:52763825-52763844 Msa0362000:five_prime_UTR 5.0%
GTGAAAGCCGACATGCCAAA+TGG - chr3_1:52758329-52758348 Msa0362000:intron 50.0%
GTTTCTGTGGTAGGAATGGG+AGG - chr3_1:52758466-52758485 Msa0362000:CDS 50.0%
AAAAGGAGTGGAACCTCCTG+AGG - chr3_1:52758633-52758652 Msa0362000:CDS 50.0%
AAAGGAGTGGAACCTCCTGA+GGG - chr3_1:52758634-52758653 Msa0362000:CDS 50.0%
GCAGAATTCGAGGTACGTTG+TGG - chr3_1:52758708-52758727 Msa0362000:five_prime_UTR 50.0%
CGAAGAGAGTGACTCGACAA+TGG - chr3_1:52759232-52759251 Msa0362000:intron 50.0%
GGAGGAAAAGGGGATGACTT+TGG - chr3_1:52759275-52759294 Msa0362000:intron 50.0%
! GGGGATGACTTTGGAAGAAG+TGG - chr3_1:52759284-52759303 Msa0362000:intron 50.0%
GCGCCGAACTATTCCACTAA+AGG + chr3_1:52759481-52759500 None:intergenic 50.0%
ACATATGGATGGAGCAGCAG+AGG - chr3_1:52759935-52759954 Msa0362000:five_prime_UTR 50.0%
! GCTGATAAGGGATTTGGGGT+TGG - chr3_1:52759983-52760002 Msa0362000:five_prime_UTR 50.0%
ACCAACTGGCATCCAACACT+TGG - chr3_1:52760469-52760488 Msa0362000:intron 50.0%
!! TCCAAGTGTTGGATGCCAGT+TGG + chr3_1:52760473-52760492 None:intergenic 50.0%
GGCAATTCAGATTCTCCACG+TGG - chr3_1:52760839-52760858 Msa0362000:intron 50.0%
CAGATTCTCCACGTGGACTT+TGG - chr3_1:52760846-52760865 Msa0362000:intron 50.0%
CACAAATCCCAAAGTCCACG+TGG + chr3_1:52760857-52760876 None:intergenic 50.0%
! GATTCTTCAGGGCACCACAA+AGG - chr3_1:52761176-52761195 Msa0362000:intron 50.0%
! CGATCTTGCCGGATTAGATG+GGG - chr3_1:52761236-52761255 Msa0362000:intron 50.0%
ATGGGAGCAGCCAATGTCTA+TGG - chr3_1:52761271-52761290 Msa0362000:intron 50.0%
TGGGAGCAGCCAATGTCTAT+GGG - chr3_1:52761272-52761291 Msa0362000:intron 50.0%
CCAAACAGGGCCTAAGTCAT+GGG + chr3_1:52761342-52761361 None:intergenic 50.0%
TCCAAACAGGGCCTAAGTCA+TGG + chr3_1:52761343-52761362 None:intergenic 50.0%
AACGAGGCTGACGATTTGAG+TGG - chr3_1:52762522-52762541 Msa0362000:five_prime_UTR 50.0%
GGTAAGACTGGATGCTTCCA+AGG - chr3_1:52762691-52762710 Msa0362000:five_prime_UTR 50.0%
TTTGGAGACTCGGACAACTC+TGG + chr3_1:52763030-52763049 None:intergenic 50.0%
CTTTGGCAGAAAGTCTCCAG+AGG - chr3_1:52763211-52763230 Msa0362000:five_prime_UTR 50.0%
TTGGCAGAAAGTCTCCAGAG+GGG - chr3_1:52763213-52763232 Msa0362000:five_prime_UTR 50.0%
AAAAGGCCACATGAGGGAGA+AGG - chr3_1:52763553-52763572 Msa0362000:five_prime_UTR 50.0%
!! GGAGCTCGAGAGTGTTTGTA+AGG - chr3_1:52763574-52763593 Msa0362000:five_prime_UTR 50.0%
CCCAGCCACAAACGTAATTC+AGG + chr3_1:52763653-52763672 None:intergenic 50.0%
AGGGATAGCTGAGGTGAAGA+AGG - chr3_1:52764451-52764470 Msa0362000:five_prime_UTR 50.0%
!! TGAGCTTGCTGCATTGAGGT+TGG - chr3_1:52764529-52764548 Msa0362000:five_prime_UTR 50.0%
TTGCTGCATTGAGGTTGGAG+AGG - chr3_1:52764534-52764553 Msa0362000:five_prime_UTR 50.0%
TGCTGCATTGAGGTTGGAGA+GGG - chr3_1:52764535-52764554 Msa0362000:five_prime_UTR 50.0%
CATTGAGGTTGGAGAGGGAA+AGG - chr3_1:52764540-52764559 Msa0362000:five_prime_UTR 50.0%
AGACACAGCTGAAGCTGTTC+AGG - chr3_1:52764613-52764632 Msa0362000:five_prime_UTR 50.0%
! CTCTGCAAGATGCTGCTTCA+TGG + chr3_1:52764882-52764901 None:intergenic 50.0%
CGAATTCTGCTCTCCATGCT+TGG + chr3_1:52764997-52765016 None:intergenic 50.0%
AGGCTCCTTTCGATCCAAGT+AGG + chr3_1:52765086-52765105 None:intergenic 50.0%
GCTACAAATCCAGGATCGCG+AGG + chr3_1:52758163-52758182 None:intergenic 55.0%
CAGCTGCTATTCGACGACGA+GGG + chr3_1:52758213-52758232 None:intergenic 55.0%
TCAGCTGCTATTCGACGACG+AGG + chr3_1:52758214-52758233 None:intergenic 55.0%
!! GGTCGTGCCATTTGGCATGT+CGG + chr3_1:52758339-52758358 None:intergenic 55.0%
TGTAGAGAGCAGCGAGTCGA+GGG + chr3_1:52758360-52758379 None:intergenic 55.0%
ATGTAGAGAGCAGCGAGTCG+AGG + chr3_1:52758361-52758380 None:intergenic 55.0%
AGAGCGCACTGTGGTTTCTG+TGG - chr3_1:52758453-52758472 Msa0362000:CDS 55.0%
CGCACTGTGGTTTCTGTGGT+AGG - chr3_1:52758457-52758476 Msa0362000:CDS 55.0%
CCGACGGCAACAATTGCTAG+CGG + chr3_1:52759015-52759034 None:intergenic 55.0%
CCGCTAGCAATTGTTGCCGT+CGG - chr3_1:52759012-52759031 Msa0362000:five_prime_UTR 55.0%
CTAGCAATTGTTGCCGTCGG+TGG - chr3_1:52759015-52759034 Msa0362000:five_prime_UTR 55.0%
AGCGCAGTTCTACCGAGGAT+TGG - chr3_1:52760540-52760559 Msa0362000:five_prime_UTR 55.0%
CCCATGACTTAGGCCCTGTT+TGG - chr3_1:52761339-52761358 Msa0362000:intron 55.0%
! GAGCATTGTCCGGCTACTTG+TGG - chr3_1:52761789-52761808 Msa0362000:five_prime_UTR 55.0%
AGCTCAGTTGGGGGTAAGAC+TGG - chr3_1:52762679-52762698 Msa0362000:five_prime_UTR 55.0%
GTCAGGCAAAGCCGAGTCTT+TGG - chr3_1:52763194-52763213 Msa0362000:five_prime_UTR 55.0%
TGAGGGCAAAAGGCCACATG+AGG - chr3_1:52763546-52763565 Msa0362000:five_prime_UTR 55.0%
GAGGGCAAAAGGCCACATGA+GGG - chr3_1:52763547-52763566 Msa0362000:five_prime_UTR 55.0%
! CTGACCTTGAGTTGTACCGC+TGG - chr3_1:52764262-52764281 Msa0362000:five_prime_UTR 55.0%
TTCACTTCTCTGCACGCCAG+CGG + chr3_1:52764281-52764300 None:intergenic 55.0%
AGCTGAGGTGAAGAAGGCAG+TGG - chr3_1:52764457-52764476 Msa0362000:five_prime_UTR 55.0%
!! CTGCTGAGCTTGCTGCATTG+AGG - chr3_1:52764525-52764544 Msa0362000:five_prime_UTR 55.0%
CTGAAGCTGTTCAGGCTGCT+GGG - chr3_1:52764621-52764640 Msa0362000:five_prime_UTR 55.0%
TGAAGCTGTTCAGGCTGCTG+GGG - chr3_1:52764622-52764641 Msa0362000:five_prime_UTR 55.0%
AGTGGCCTCAATGCAGACTC+TGG + chr3_1:52764914-52764933 None:intergenic 55.0%
CGCGAGGTTGCTGTCCTACA+TGG + chr3_1:52758147-52758166 None:intergenic 60.0%
! GAGTCGAGGGTCGTGCCATT+TGG + chr3_1:52758347-52758366 None:intergenic 60.0%
CGAGCTCCTTCTCCCTCATG+TGG + chr3_1:52763562-52763581 None:intergenic 60.0%
!! CTGAGGGGCACTTCCGCAAA+TGG - chr3_1:52763913-52763932 Msa0362000:five_prime_UTR 60.0%
CACGCCAGCGGTACAACTCA+AGG + chr3_1:52764269-52764288 None:intergenic 60.0%
GCTGAAGCTGTTCAGGCTGC+TGG - chr3_1:52764620-52764639 Msa0362000:five_prime_UTR 60.0%
GGACAGCAACCTCGCGATCC+TGG - chr3_1:52758151-52758170 Msa0362000:CDS 65.0%
! GGGAAGGGAAGAGCGCACTG+TGG - chr3_1:52758444-52758463 Msa0362000:CDS 65.0%
GTGGTAGGAATGGGAGGGCG+AGG - chr3_1:52758472-52758491 Msa0362000:CDS 65.0%
! TGGGGAGCGCAGTTCTACCG+AGG - chr3_1:52760535-52760554 Msa0362000:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 52757740 52765345 52757740 ID=Msa0362000;Name=Msa0362000
chr3_1 mRNA 52757740 52765345 52757740 ID=Msa0362000-mRNA-1;Parent=Msa0362000;Name=Msa0362000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=4895|1|1|1|0.77|0.8|10|303|179
chr3_1 exon 52757740 52758294 52757740 ID=Msa0362000-mRNA-1:exon:9548;Parent=Msa0362000-mRNA-1
chr3_1 exon 52758391 52759175 52758391 ID=Msa0362000-mRNA-1:exon:9547;Parent=Msa0362000-mRNA-1
chr3_1 exon 52759288 52759377 52759288 ID=Msa0362000-mRNA-1:exon:9546;Parent=Msa0362000-mRNA-1
chr3_1 exon 52759454 52759552 52759454 ID=Msa0362000-mRNA-1:exon:9545;Parent=Msa0362000-mRNA-1
chr3_1 exon 52759636 52760442 52759636 ID=Msa0362000-mRNA-1:exon:9544;Parent=Msa0362000-mRNA-1
chr3_1 exon 52760522 52760645 52760522 ID=Msa0362000-mRNA-1:exon:9543;Parent=Msa0362000-mRNA-1
chr3_1 exon 52761039 52761188 52761039 ID=Msa0362000-mRNA-1:exon:9542;Parent=Msa0362000-mRNA-1
chr3_1 exon 52761754 52761899 52761754 ID=Msa0362000-mRNA-1:exon:9541;Parent=Msa0362000-mRNA-1
chr3_1 exon 52762186 52762273 52762186 ID=Msa0362000-mRNA-1:exon:9540;Parent=Msa0362000-mRNA-1
chr3_1 exon 52762452 52765345 52762452 ID=Msa0362000-mRNA-1:exon:9539;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52762452 52765345 52762452 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52762186 52762273 52762186 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52761754 52761899 52761754 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52761039 52761188 52761039 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52760522 52760645 52760522 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52759636 52760442 52759636 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52759454 52759552 52759454 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52759288 52759377 52759288 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 five_prime_UTR 52758679 52759175 52758679 ID=Msa0362000-mRNA-1:five_prime_utr;Parent=Msa0362000-mRNA-1
chr3_1 CDS 52758391 52758678 52758391 ID=Msa0362000-mRNA-1:cds;Parent=Msa0362000-mRNA-1
chr3_1 CDS 52758043 52758294 52758043 ID=Msa0362000-mRNA-1:cds;Parent=Msa0362000-mRNA-1
chr3_1 three_prime_UTR 52757740 52758042 52757740 ID=Msa0362000-mRNA-1:three_prime_utr;Parent=Msa0362000-mRNA-1
Gene Sequence

>Msa0362000

ATGATGACTTGGTTTCTAACTTCTAAGCATGATGCTATGATGGAAGGGATAGCTGAGGTGAAGAAGGCAGTGGCAAAAGCCTCAAAAAAAGGTAAAGCACGCTTTGCCAAATCTCTTTCTGCTGAGCTTGCTGCATTGAGGTTGGAGAGGGAAAGGGAGTCAAAATTATTGAAAAAGGAGAACCAGTGTTTGAAAATACAACTTCGAGACACAGCTGAAGCTGTTCAGGCTGCTGGGGAACTACTTGTTAGACTAAGAGAAGCTGAACAAGCAGCATATGTTGCAGAGGAAAACTTTGCAAATGTGCGACGAGATAACGAAGAGTTAAAAATGCAAGTAGAGAAGCCGAGTAGAAAACACAATACAGAGCTTAATACCATGAAGCAGCATCTTGCAGAGAGCAAATTGCCAGAGTCTGCATTGAGGCCACTGTATCAAGAGGATTCTGATATGAAACACAATAATACAACTTCTTCCTATGCTTATGATGACCAAGCATGGAGAGCAGAATTCGGAGCGATATATCAGGAGCATTACTAA
Protein sequence

>Msa0362000

MMTWFLTSKHDAMMEGIAEVKKAVAKASKKGKARFAKSLSAELAALRLERERESKLLKKENQCLKIQLRDTAEAVQAAGELLVRLREAEQAAYVAEENFANVRRDNEELKMQVEKPSRKHNTELNTMKQHLAESKLPESALRPLYQEDSDMKHNNTTSSYAYDDQAWRAEFGAIYQEHY*