AlfalfaGEDB | Msa0967180

M. sativa cultivar zhongmu-4 / Msa0967180

KEGG: K16732
GO: GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009574 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0032502 GO:0032506 GO:0034622 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044002 GO:0044085 GO:0044111 GO:0044115 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0048646 GO:0048856 GO:0050896 GO:0051258 GO:0051301 GO:0051701 GO:0051704 GO:0051707 GO:0051816 GO:0052093 GO:0052095 GO:0052096 GO:0055028 GO:0061640 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047
PFAM: PF03999.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967180	XP_003619685.2	94.774	708	36	1	1	707	1	708	0.0	1355

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967180	sp\|Q9FHM4\|MA653_ARATH	55.956	722	265	11	9	707	8	699	0.0	707

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050380	Msa0967180	0.831720	1.422672e-55	-8.615850e-47
Msa0180500	Msa0967180	0.806879	6.638779e-50	-8.615850e-47
Msa0198910	Msa0967180	0.806218	9.154712e-50	-8.615850e-47
Msa0202720	Msa0967180	0.818194	2.225653e-52	-8.615850e-47
Msa0223010	Msa0967180	0.809751	1.620367e-50	-8.615850e-47
Msa0278190	Msa0967180	0.839607	1.431961e-57	-8.615850e-47
Msa0362000	Msa0967180	0.810779	9.729214e-51	-8.615850e-47
Msa0444190	Msa0967180	0.805078	1.587890e-49	-8.615850e-47
Msa0444750	Msa0967180	-0.814748	1.315597e-51	-8.615850e-47
Msa0479340	Msa0967180	0.809525	1.812435e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967180	MtrunA17_Chr6g0476051	94.774	708	36	1	1	707	1	708	0.0	1355
Msa0967180	MtrunA17_Chr1g0188201	66.257	732	216	11	1	707	1	726	0.0	907
Msa0967180	MtrunA17_Chr7g0245851	47.887	710	315	14	10	706	362	1029	0.0	551
Msa0967180	MtrunA17_Chr5g0444881	50.573	524	240	8	13	521	12	531	6.36e-161	476
Msa0967180	MtrunA17_Chr1g0164981	50.000	522	237	8	15	519	15	529	5.38e-155	462
Msa0967180	MtrunA17_Chr8g0354131	41.681	571	295	10	13	561	11	565	5.20e-135	409
Msa0967180	MtrunA17_Chr3g0122591	43.077	520	275	9	14	516	17	532	9.81e-130	397
Msa0967180	MtrunA17_Chr8g0345241	35.260	519	289	12	8	505	5	497	2.81e-80	265
Msa0967180	MtrunA17_Chr4g0039561	88.889	54	6	0	25	78	144	197	1.07e-25	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967180	AT5G51600.1	55.956	722	265	11	9	707	8	699	0.0	707
Msa0967180	AT3G60840.1	46.252	707	323	17	14	706	13	676	0.0	553
Msa0967180	AT5G62250.2	55.393	547	219	8	12	541	5	543	3.37e-180	525
Msa0967180	AT5G62250.1	55.393	547	219	8	12	541	5	543	3.37e-180	525
Msa0967180	AT4G26760.1	47.183	568	278	7	13	566	12	571	5.81e-166	489
Msa0967180	AT5G55230.3	50.473	529	244	7	13	527	12	536	2.83e-164	486
Msa0967180	AT5G55230.1	50.473	529	244	7	13	527	12	536	2.83e-164	486
Msa0967180	AT1G14690.1	45.611	581	283	9	15	566	16	592	1.22e-160	477
Msa0967180	AT1G14690.2	45.611	581	283	9	15	566	16	592	1.22e-160	477
Msa0967180	AT5G55230.2	48.029	558	243	8	13	527	12	565	1.73e-158	472

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Find 140 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCCTCTTTGACTT+GGG	0.461391	6_3:+96445379	None:intergenic
AAACATTGAGATCAATCACC+AGG	0.616321	6_3:-96447706	Msa0967180:five_prime_UTR
AAAGCGCCTAGGACACCCAA+TGG	0.614735	6_3:-96444177	Msa0967180:CDS
AACACCTGTTGCTCTTCAAT+CGG	0.494691	6_3:+96445858	None:intergenic
AACATGAAATGGTATCGTCT+AGG	0.577424	6_3:+96444034	None:intergenic
AACCGATACAATGCTGGTAG+AGG	0.566080	6_3:-96445042	Msa0967180:CDS
AACTAAAGCCAATTGGCTTA+TGG	0.394727	6_3:+96446060	None:intergenic
AAGAGGTACCTTTGGAGGAT+CGG	0.527379	6_3:-96444139	Msa0967180:CDS
AAGTCACCTCCTAAATGAGC+CGG	0.556602	6_3:+96442983	None:intergenic
AAGTCTTCAGACAAGGTGTT+TGG	0.442884	6_3:+96445786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCACAAGAAATCATAGTAAA+AGG	+	chr6_3:96443063-96443082	None:intergenic	30.0%
AATGGTAGTAACAAAAAGCA+TGG	+	chr6_3:96443171-96443190	None:intergenic	30.0%
AATCAAATCTACTTCCAATG+TGG	+	chr6_3:96443210-96443229	None:intergenic	30.0%
TAGATAATATGGCATGAAGT+TGG	-	chr6_3:96443544-96443563	Msa0967180:intron	30.0%
AGATAATATGGCATGAAGTT+GGG	-	chr6_3:96443545-96443564	Msa0967180:intron	30.0%
TAGATAAAGCTAATTGCTCT+AGG	-	chr6_3:96443641-96443660	Msa0967180:intron	30.0%
AGATAAAGCTAATTGCTCTA+GGG	-	chr6_3:96443642-96443661	Msa0967180:intron	30.0%
TCTAACCTGTCTATTATGTA+CGG	+	chr6_3:96443740-96443759	None:intergenic	30.0%
TGTATCTATATACTGCTTGA+TGG	-	chr6_3:96443817-96443836	Msa0967180:intron	30.0%
ACAACTTCATACACTTCAAA+AGG	-	chr6_3:96444213-96444232	Msa0967180:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	96442826	96447777	96442826	ID=Msa0967180;Name=Msa0967180
chr6_3	mRNA	96442826	96447777	96442826	ID=Msa0967180-mRNA-1;Parent=Msa0967180;Name=Msa0967180-mRNA-1;_AED=0.14;_eAED=0.14;_QI=318\|1\|1\|1\|0.84\|0.78\|14\|96\|710
chr6_3	exon	96442826	96443358	96442826	ID=Msa0967180-mRNA-1:exon:17864;Parent=Msa0967180-mRNA-1
chr6_3	exon	96444025	96444286	96444025	ID=Msa0967180-mRNA-1:exon:17863;Parent=Msa0967180-mRNA-1
chr6_3	exon	96444593	96444667	96444593	ID=Msa0967180-mRNA-1:exon:17862;Parent=Msa0967180-mRNA-1
chr6_3	exon	96444766	96444839	96444766	ID=Msa0967180-mRNA-1:exon:17861;Parent=Msa0967180-mRNA-1
chr6_3	exon	96444983	96445070	96444983	ID=Msa0967180-mRNA-1:exon:17860;Parent=Msa0967180-mRNA-1
chr6_3	exon	96445298	96445449	96445298	ID=Msa0967180-mRNA-1:exon:17859;Parent=Msa0967180-mRNA-1
chr6_3	exon	96445538	96445688	96445538	ID=Msa0967180-mRNA-1:exon:17858;Parent=Msa0967180-mRNA-1
chr6_3	exon	96445776	96445931	96445776	ID=Msa0967180-mRNA-1:exon:17857;Parent=Msa0967180-mRNA-1
chr6_3	exon	96446018	96446227	96446018	ID=Msa0967180-mRNA-1:exon:17856;Parent=Msa0967180-mRNA-1
chr6_3	exon	96446363	96446608	96446363	ID=Msa0967180-mRNA-1:exon:17855;Parent=Msa0967180-mRNA-1
chr6_3	exon	96446850	96447056	96446850	ID=Msa0967180-mRNA-1:exon:17854;Parent=Msa0967180-mRNA-1
chr6_3	exon	96447149	96447348	96447149	ID=Msa0967180-mRNA-1:exon:17853;Parent=Msa0967180-mRNA-1
chr6_3	exon	96447541	96447579	96447541	ID=Msa0967180-mRNA-1:exon:17852;Parent=Msa0967180-mRNA-1
chr6_3	exon	96447624	96447777	96447624	ID=Msa0967180-mRNA-1:exon:17851;Parent=Msa0967180-mRNA-1
chr6_3	five_prime_UTR	96447624	96447777	96447624	ID=Msa0967180-mRNA-1:five_prime_utr;Parent=Msa0967180-mRNA-1
chr6_3	five_prime_UTR	96447541	96447579	96447541	ID=Msa0967180-mRNA-1:five_prime_utr;Parent=Msa0967180-mRNA-1
chr6_3	five_prime_UTR	96447224	96447348	96447224	ID=Msa0967180-mRNA-1:five_prime_utr;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96447149	96447223	96447149	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96446850	96447056	96446850	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96446363	96446608	96446363	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96446018	96446227	96446018	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96445776	96445931	96445776	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96445538	96445688	96445538	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96445298	96445449	96445298	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96444983	96445070	96444983	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96444766	96444839	96444766	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96444593	96444667	96444593	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96444025	96444286	96444025	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	CDS	96442922	96443358	96442922	ID=Msa0967180-mRNA-1:cds;Parent=Msa0967180-mRNA-1
chr6_3	three_prime_UTR	96442826	96442921	96442826	ID=Msa0967180-mRNA-1:three_prime_utr;Parent=Msa0967180-mRNA-1

Gene Sequence

>Msa0967180

ATGCATAAACCTCATAACGATCATCCTCTTCCGCAAGCTGAAACCACATGTGGATCACTTCTTCAAGAACTTCAGATAATATGGCATGAAGTTGGGGAGTCTGAGTCTGAAAAAGATAGGATGTTGTATGAGCTTGAACAAAAGTGTCTAGAAGTATACAGAAGAAAGGTAGATAAAGCTAATTGCTCTAGGGCTCAAGTTAGGCAAGAAATTGCTGATTCCGAGGCAGAACTTACAGCTATCTGTTCCGAAATGGGAGAGCGACCCGTACATAATAGACAGTCCGGTCAAAAGGCTAGAAGCTTGAAGGAAGAGCTAGCAATGATTCTCCTGGAGCTGGAGGAAATGCAAAAGCGAAAGCATGAGCGGAGAAATCAATTCAAAGAAGTTCAAGAGCAGATTCATGGTATATCAAACGAGATTTCTGGTCCCAGAGAAAATGTCTCATTCGTTGTAGATGAAACCGATTTGTCATTGCGGAAACTTGAAGAATTGCACAGACAACTTCATACACTTCAAAAGGAGAAGAGTGATCGTATGAAGAAGGTCCAAGAAAACCTGCACACTTTAAGTTCTCTCTGTTCGGTACTTGGTTTAGACTTTAAGCAGACAGTCAGCGAAGTTCATCCCAGTTTAGGAAATTCGGAAGGATCCAGGAGTGTAAATAATGATACCATAAGCCAATTGGCTTTAGTTCTACAAGAACTGCGAGGAGTGAAATTGCAGAGAATGCAAAAGCTTCAAGATCTAGCAACATCATTATTGGAACTCTGGAATTTGATGGATACACCGATTGAAGAGCAACAGGTGTTTCAGAATGTTACATGTAACATCGCAGCTTCTGAACATGAAGTAACCGAGCCAAACACCTTGTCTGAAGACTTCATTAATCATGTGGAAGCAGAAGTATCTAGATTAGAGGACTTAAAATCAAGCAAAATGAAAGAGCTTGTTTGGAAAAAAAGAGCAGAGTTAGAGGAGATTTGTAGAAAGACTCATTTGGTTCAAGAATTTGATGTTGCGATCGAAAATGCTATTGAGTCTGGATCTGTAGACCCTGCTTATGTGCTTGAACAAATTGAGCATCAGATTTCCCAAGTCAAAGAGGAAGCTTTTAGCAGAATAGAAATACTTGAAAATGTTGAGAAGTGGTTATCAGCATGTGACGAAGAGTCTTGGCTGGAGGAGTATAGCAGAGATGAAAACCGATACAATGCTGGTAGAGGTACTCATCTAAATCTTAAGCGAGCTGAGAAAGCTCGTATCTTGGTGAACAAAATTCCAGCAATGACAGACAAATTGACTTCAAAAACAGTAGCATGGGAAAAGGATAAAAGCACCGAGTTTGTATATGATGGTGTCCGTTTAGTTTCTATGCTTGAAGACTACATCTCATTACGGCAAGAGAAGGAGCAAGAACGCCGTAGACAGCGGGACTTGAAGAAACTTCAGGTACAAATGATAGCAGAACAGGAAGTACTGTACGGGTCAAAGAGCCCTTCAAAGGCCCAGAGTGCAAGAAAAGCGCCTAGGACACCCAATGGAAGTGCAGCTAATAGAAGAGGTACCTTTGGAGGATCGGTTCTAAAACCTGATTCAAAAGCTACTCAATCAAGCTCCACAAGAAAGACTGGCAAAGTAAACCAAATTGAGCAAACAAATAACCTAGACGATACCATTTCATGTTTCTCATCAGCTAGAAGAGGATTCGATATTACTGATTTTCCTACGAGAAAATACTCATTTGGTGCTGGAATTGTTCGGGATATCGAATCTCCTTTGACTCGACAACCTTTTACTACCATCTCTTCAACAATATCATCACAAGAGAATGTAGAAAATGCTGCAGATGAATTAAGTATGCAGAAGCAGAATTTGCAGAAAACATTAGCAGCTAAAAATTTGCCACTCACTACTACTACTATCCCGAAAACAGACACGTTGGTCGATGAAGAAAATCGAACTCCAAAGGAAAAGTCTATTCCTGTCTCCACTACTACCACTACTACACCAAAGACAGTGTCAGTTCCTATGAATACGGCCACGACTCCGGCTCATTTAGGAGGTGACTTGATTCAATATATTGAATATTCCTTTGAGGAAATAAGGCTTGGTTTTTTTTCTTTTTTTTGA

Protein sequence

>Msa0967180

MHKPHNDHPLPQAETTCGSLLQELQIIWHEVGESESEKDRMLYELEQKCLEVYRRKVDKANCSRAQVRQEIADSEAELTAICSEMGERPVHNRQSGQKARSLKEELAMILLELEEMQKRKHERRNQFKEVQEQIHGISNEISGPRENVSFVVDETDLSLRKLEELHRQLHTLQKEKSDRMKKVQENLHTLSSLCSVLGLDFKQTVSEVHPSLGNSEGSRSVNNDTISQLALVLQELRGVKLQRMQKLQDLATSLLELWNLMDTPIEEQQVFQNVTCNIAASEHEVTEPNTLSEDFINHVEAEVSRLEDLKSSKMKELVWKKRAELEEICRKTHLVQEFDVAIENAIESGSVDPAYVLEQIEHQISQVKEEAFSRIEILENVEKWLSACDEESWLEEYSRDENRYNAGRGTHLNLKRAEKARILVNKIPAMTDKLTSKTVAWEKDKSTEFVYDGVRLVSMLEDYISLRQEKEQERRRQRDLKKLQVQMIAEQEVLYGSKSPSKAQSARKAPRTPNGSAANRRGTFGGSVLKPDSKATQSSSTRKTGKVNQIEQTNNLDDTISCFSSARRGFDITDFPTRKYSFGAGIVRDIESPLTRQPFTTISSTISSQENVENAADELSMQKQNLQKTLAAKNLPLTTTTIPKTDTLVDEENRTPKEKSIPVSTTTTTTPKTVSVPMNTATTPAHLGGDLIQYIEYSFEEIRLGFFSFF*