Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362850 | KEH23480.1 | 88.182 | 110 | 10 | 1 | 91 | 200 | 1 | 107 | 3.56e-49 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362850 | A0A072UCA0 | 88.182 | 110 | 10 | 1 | 91 | 200 | 1 | 107 | 1.70e-49 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0362850 | Msa0362860 | 0.813862 | 2.064568e-51 | -8.615850e-47 |
| Msa0362850 | Msa0884980 | 0.804430 | 2.168890e-49 | -8.615850e-47 |
| Msa0362850 | Msa1351080 | 0.801497 | 8.755537e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362850 | MtrunA17_Chr1g0170041 | 50.420 | 119 | 37 | 3 | 96 | 192 | 71 | 189 | 8.86e-22 | 87.8 |
| Msa0362850 | MtrunA17_Chr5g0398411 | 38.994 | 159 | 59 | 6 | 8 | 143 | 100 | 243 | 5.16e-21 | 87.4 |
| Msa0362850 | MtrunA17_Chr4g0053771 | 44.203 | 138 | 50 | 6 | 79 | 198 | 202 | 330 | 7.80e-21 | 88.2 |
| Msa0362850 | MtrunA17_Chr8g0364121 | 42.105 | 133 | 60 | 3 | 83 | 198 | 187 | 319 | 4.29e-20 | 85.9 |
| Msa0362850 | MtrunA17_Chr7g0243381 | 65.000 | 60 | 20 | 1 | 95 | 153 | 224 | 283 | 4.25e-16 | 74.7 |
| Msa0362850 | MtrunA17_Chr4g0045501 | 37.342 | 158 | 63 | 5 | 72 | 198 | 44 | 196 | 7.20e-15 | 69.7 |
| Msa0362850 | MtrunA17_Chr3g0108131 | 44.595 | 74 | 36 | 1 | 80 | 153 | 119 | 187 | 4.26e-14 | 68.6 |
| Msa0362850 | MtrunA17_Chr4g0055681 | 44.444 | 81 | 39 | 2 | 69 | 149 | 164 | 238 | 3.24e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAAGTTTGCTAAGAATT+TGG | 0.129763 | 3_1:+54598794 | None:intergenic |
| CACATATTAAGAAGCATATT+TGG | 0.132298 | 3_1:+54598582 | None:intergenic |
| TTTCTTGTAGTGCTCTATTT+GGG | 0.230651 | 3_1:-54599161 | Msa0362850:intron |
| CATCCAAACTCGTTCCAAAA+AGG | 0.284341 | 3_1:-54598623 | Msa0362850:CDS |
| CCAAATTCTTAGCAAACTTT+GGG | 0.310135 | 3_1:-54598794 | Msa0362850:CDS |
| CCAAAGTTCAGCAGAAAGTT+AGG | 0.316087 | 3_1:-54598703 | Msa0362850:CDS |
| TCCAAATTCTTAGCAAACTT+TGG | 0.328712 | 3_1:-54598795 | Msa0362850:CDS |
| CCAAGGCTGCTATTCCTGTT+GGG | 0.358053 | 3_1:-54598957 | Msa0362850:CDS |
| ATAGCAGCCTTGGGAGGAAC+CGG | 0.372152 | 3_1:+54598967 | None:intergenic |
| ACATATTAAGAAGCATATTT+GGG | 0.385799 | 3_1:+54598583 | None:intergenic |
| GCATGAACCCTGCCTTTGTC+GGG | 0.410731 | 3_1:+54598862 | None:intergenic |
| CCCAAGGCTGCTATTCCTGT+TGG | 0.411030 | 3_1:-54598958 | Msa0362850:CDS |
| AGCATGAACCCTGCCTTTGT+CGG | 0.423352 | 3_1:+54598861 | None:intergenic |
| CCTAACTTTCTGCTGAACTT+TGG | 0.428410 | 3_1:+54598703 | None:intergenic |
| CCACACAACAGATGGCACTA+TGG | 0.434409 | 3_1:-54598752 | Msa0362850:CDS |
| CCCAACAGGAATAGCAGCCT+TGG | 0.445282 | 3_1:+54598957 | None:intergenic |
| AAAGGCAGGGTTCATGCTAT+TGG | 0.452767 | 3_1:-54598856 | Msa0362850:CDS |
| TTTGACAAGTTGCAGGAAGA+TGG | 0.458126 | 3_1:-54599096 | Msa0362850:CDS |
| GGAGAATCCCCTTATGGATC+AGG | 0.459431 | 3_1:-54599058 | Msa0362850:CDS |
| AGTTAGGCCCCGACAAAGGC+AGG | 0.461074 | 3_1:-54598870 | Msa0362850:CDS |
| TCTTCCTGCAACTTGTCAAA+AGG | 0.467018 | 3_1:+54599099 | None:intergenic |
| AGCAGCTCTACAAGAGGCAA+AGG | 0.473342 | 3_1:-54598673 | Msa0362850:CDS |
| TTCTGATGGAGAATGACAAC+AGG | 0.473736 | 3_1:+54599000 | None:intergenic |
| CTCTACAAGAGGCAAAGGCT+TGG | 0.481246 | 3_1:-54598668 | Msa0362850:CDS |
| TTGTGGTGAGACTCCCCAAC+AGG | 0.483854 | 3_1:+54598943 | None:intergenic |
| TTGTAGTGCTCTATTTGGGG+TGG | 0.497370 | 3_1:-54599157 | Msa0362850:intron |
| CCATCAGAAGAATGTTGGCC+CGG | 0.497726 | 3_1:-54598986 | Msa0362850:CDS |
| GATGTTGAACCTGATCCATA+AGG | 0.502039 | 3_1:+54599049 | None:intergenic |
| ATGTTGAACCTGATCCATAA+GGG | 0.503049 | 3_1:+54599050 | None:intergenic |
| TGTTGGCCCGGTTCCTCCCA+AGG | 0.517321 | 3_1:-54598974 | Msa0362850:CDS |
| TTCTTGTAGTGCTCTATTTG+GGG | 0.524535 | 3_1:-54599160 | Msa0362850:intron |
| ACAAGAGGCAAAGGCTTGGA+TGG | 0.527393 | 3_1:-54598664 | Msa0362850:CDS |
| AACTCTTCATAAGTTGTGAC+CGG | 0.527612 | 3_1:+54598889 | None:intergenic |
| CCAACAGGAATAGCAGCCTT+GGG | 0.530565 | 3_1:+54598958 | None:intergenic |
| CAAGGCTGCTATTCCTGTTG+GGG | 0.534161 | 3_1:-54598956 | Msa0362850:CDS |
| CCGGGCCAACATTCTTCTGA+TGG | 0.536996 | 3_1:+54598986 | None:intergenic |
| GGCAGGGTTCATGCTATTGG+TGG | 0.545626 | 3_1:-54598853 | Msa0362850:CDS |
| GACTCTGACCACACAACAGA+TGG | 0.552979 | 3_1:-54598760 | Msa0362850:CDS |
| TAGCAGCCTTGGGAGGAACC+GGG | 0.553893 | 3_1:+54598968 | None:intergenic |
| CTATTTCAGTGTCTGTGTCA+AGG | 0.556783 | 3_1:+54598728 | None:intergenic |
| TCTAAAATAGTATGCTCAGA+AGG | 0.557363 | 3_1:+54599024 | None:intergenic |
| GTCACAACTTATGAAGAGTT+AGG | 0.570550 | 3_1:-54598886 | Msa0362850:CDS |
| CAAATTCTTAGCAAACTTTG+GGG | 0.570658 | 3_1:-54598793 | Msa0362850:CDS |
| AATTCTTAGCAAACTTTGGG+GGG | 0.572825 | 3_1:-54598791 | Msa0362850:CDS |
| ATTCTCCATCAGAAGAATGT+TGG | 0.580433 | 3_1:-54598991 | Msa0362850:CDS |
| TGTTGGGGAGTCTCACCACA+AGG | 0.588842 | 3_1:-54598941 | Msa0362850:CDS |
| ACTTGTCAAAAGGATTGTGA+AGG | 0.595257 | 3_1:+54599109 | None:intergenic |
| AAATTCTTAGCAAACTTTGG+GGG | 0.611619 | 3_1:-54598792 | Msa0362850:CDS |
| TTGTGAAGGGCTAAAGCAGA+GGG | 0.625364 | 3_1:+54599123 | None:intergenic |
| CATGAACCCTGCCTTTGTCG+GGG | 0.627929 | 3_1:+54598863 | None:intergenic |
| TGTTGAACCTGATCCATAAG+GGG | 0.628290 | 3_1:+54599051 | None:intergenic |
| AAGAGTAGCAGCTCTACAAG+AGG | 0.633509 | 3_1:-54598679 | Msa0362850:CDS |
| GAAGAGTTAGGCCCCGACAA+AGG | 0.634729 | 3_1:-54598874 | Msa0362850:CDS |
| ATTGTGAAGGGCTAAAGCAG+AGG | 0.639362 | 3_1:+54599122 | None:intergenic |
| CTTGTCAAAAGGATTGTGAA+GGG | 0.642960 | 3_1:+54599110 | None:intergenic |
| TAGGAGAGAGCACAACCTTG+TGG | 0.651045 | 3_1:+54598926 | None:intergenic |
| ACAGGAATAGCAGCCTTGGG+AGG | 0.658235 | 3_1:+54598961 | None:intergenic |
| CCATAGTGCCATCTGTTGTG+TGG | 0.664348 | 3_1:+54598752 | None:intergenic |
| GTTAGGCCCCGACAAAGGCA+GGG | 0.666970 | 3_1:-54598869 | Msa0362850:CDS |
| TTCATAAGTTGTGACCGGAG+TGG | 0.702360 | 3_1:+54598894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTTTTGAAGCTAAA+TGG | - | chr3_1:54599008-54599027 | Msa0362850:CDS | 20.0% |
| !!! | CTAAAATTTTTGAAGCTAAA+TGG | - | chr3_1:54599008-54599027 | Msa0362850:CDS | 20.0% |
| ! | ATTATCATATGTTGAAGTTG+TGG | + | chr3_1:54598721-54598740 | None:intergenic | 25.0% |
| !! | AAAATTTAGCTTCAGTCATA+GGG | + | chr3_1:54598901-54598920 | None:intergenic | 25.0% |
| !! | TAAAATTTAGCTTCAGTCAT+AGG | + | chr3_1:54598902-54598921 | None:intergenic | 25.0% |
| ! | TGTAATTGCTTCAAAATTTG+TGG | - | chr3_1:54598945-54598964 | Msa0362850:CDS | 25.0% |
| ! | ATTATCATATGTTGAAGTTG+TGG | + | chr3_1:54598721-54598740 | None:intergenic | 25.0% |
| !! | AAAATTTAGCTTCAGTCATA+GGG | + | chr3_1:54598901-54598920 | None:intergenic | 25.0% |
| !! | TAAAATTTAGCTTCAGTCAT+AGG | + | chr3_1:54598902-54598921 | None:intergenic | 25.0% |
| ! | TGTAATTGCTTCAAAATTTG+TGG | - | chr3_1:54598945-54598964 | Msa0362850:CDS | 25.0% |
| !!! | GAGAATTTTTTTGGGTGAAT+GGG | - | chr3_1:54598591-54598610 | Msa0362850:CDS | 30.0% |
| !!! | AGAATTTTTTTGGGTGAATG+GGG | - | chr3_1:54598592-54598611 | Msa0362850:CDS | 30.0% |
| ! | AAGTTTTGCATCAGAAATTG+TGG | - | chr3_1:54598815-54598834 | Msa0362850:CDS | 30.0% |
| ! | AATAGAGCACTACAAGAAAA+TGG | + | chr3_1:54599034-54599053 | None:intergenic | 30.0% |
| ! | TTTTCTTGTAGTGCTCTATT+TGG | - | chr3_1:54599034-54599053 | Msa0362850:CDS | 30.0% |
| TTTCTTGTAGTGCTCTATTT+GGG | - | chr3_1:54599035-54599054 | Msa0362850:CDS | 30.0% | |
| ! | AGATGGTGATATTCATTTTG+AGG | - | chr3_1:54599117-54599136 | Msa0362850:CDS | 30.0% |
| ! | TCTAAAATAGTATGCTCAGA+AGG | + | chr3_1:54599175-54599194 | None:intergenic | 30.0% |
| ! | AAGAATTTGGACACTTTTCT+TGG | + | chr3_1:54599392-54599411 | None:intergenic | 30.0% |
| TCCAAATTCTTAGCAAACTT+TGG | - | chr3_1:54599401-54599420 | Msa0362850:intron | 30.0% | |
| CCAAATTCTTAGCAAACTTT+GGG | - | chr3_1:54599402-54599421 | Msa0362850:intron | 30.0% | |
| CAAATTCTTAGCAAACTTTG+GGG | - | chr3_1:54599403-54599422 | Msa0362850:intron | 30.0% | |
| AAATTCTTAGCAAACTTTGG+GGG | - | chr3_1:54599404-54599423 | Msa0362850:intron | 30.0% | |
| ! | GTGTTTTATAACACCCTTTT+TGG | + | chr3_1:54599590-54599609 | None:intergenic | 30.0% |
| !!! | GAGAATTTTTTTGGGTGAAT+GGG | - | chr3_1:54598591-54598610 | Msa0362850:CDS | 30.0% |
| !!! | AGAATTTTTTTGGGTGAATG+GGG | - | chr3_1:54598592-54598611 | Msa0362850:CDS | 30.0% |
| ! | AAGTTTTGCATCAGAAATTG+TGG | - | chr3_1:54598815-54598834 | Msa0362850:CDS | 30.0% |
| ! | AATAGAGCACTACAAGAAAA+TGG | + | chr3_1:54599034-54599053 | None:intergenic | 30.0% |
| ! | TTTTCTTGTAGTGCTCTATT+TGG | - | chr3_1:54599034-54599053 | Msa0362850:CDS | 30.0% |
| TTTCTTGTAGTGCTCTATTT+GGG | - | chr3_1:54599035-54599054 | Msa0362850:CDS | 30.0% | |
| ! | AGATGGTGATATTCATTTTG+AGG | - | chr3_1:54599117-54599136 | Msa0362850:CDS | 30.0% |
| ! | TCTAAAATAGTATGCTCAGA+AGG | + | chr3_1:54599175-54599194 | None:intergenic | 30.0% |
| ! | AAGAATTTGGACACTTTTCT+TGG | + | chr3_1:54599392-54599411 | None:intergenic | 30.0% |
| TCCAAATTCTTAGCAAACTT+TGG | - | chr3_1:54599401-54599420 | Msa0362850:intron | 30.0% | |
| CCAAATTCTTAGCAAACTTT+GGG | - | chr3_1:54599402-54599421 | Msa0362850:intron | 30.0% | |
| CAAATTCTTAGCAAACTTTG+GGG | - | chr3_1:54599403-54599422 | Msa0362850:intron | 30.0% | |
| AAATTCTTAGCAAACTTTGG+GGG | - | chr3_1:54599404-54599423 | Msa0362850:intron | 30.0% | |
| ! | GTGTTTTATAACACCCTTTT+TGG | + | chr3_1:54599590-54599609 | None:intergenic | 30.0% |
| !!! | GGAGAATTTTTTTGGGTGAA+TGG | - | chr3_1:54598590-54598609 | Msa0362850:CDS | 35.0% |
| ! | TACTTTTCTCTTCTCTCTCA+CGG | + | chr3_1:54598632-54598651 | None:intergenic | 35.0% |
| ATGTTGAAGTTGTGGCAAAA+GGG | + | chr3_1:54598713-54598732 | None:intergenic | 35.0% | |
| TATGTTGAAGTTGTGGCAAA+AGG | + | chr3_1:54598714-54598733 | None:intergenic | 35.0% | |
| CTTCACTATTAGTGGCAATA+TGG | + | chr3_1:54598746-54598765 | None:intergenic | 35.0% | |
| AGCTAGAACTTCACTATTAG+TGG | + | chr3_1:54598754-54598773 | None:intergenic | 35.0% | |
| TTCTTGTAGTGCTCTATTTG+GGG | - | chr3_1:54599036-54599055 | Msa0362850:CDS | 35.0% | |
| CTTGTCAAAAGGATTGTGAA+GGG | + | chr3_1:54599089-54599108 | None:intergenic | 35.0% | |
| ACTTGTCAAAAGGATTGTGA+AGG | + | chr3_1:54599090-54599109 | None:intergenic | 35.0% | |
| ATGTTGAACCTGATCCATAA+GGG | + | chr3_1:54599149-54599168 | None:intergenic | 35.0% | |
| ATTCTCCATCAGAAGAATGT+TGG | - | chr3_1:54599205-54599224 | Msa0362850:intron | 35.0% | |
| TGTGCTCTCTCCTATAAAAA+TGG | - | chr3_1:54599279-54599298 | Msa0362850:intron | 35.0% | |
| AACTCTTCATAAGTTGTGAC+CGG | + | chr3_1:54599310-54599329 | None:intergenic | 35.0% | |
| GTCACAACTTATGAAGAGTT+AGG | - | chr3_1:54599310-54599329 | Msa0362850:intron | 35.0% | |
| !! | CCCAAAGTTTGCTAAGAATT+TGG | + | chr3_1:54599405-54599424 | None:intergenic | 35.0% |
| AATTCTTAGCAAACTTTGGG+GGG | - | chr3_1:54599405-54599424 | Msa0362850:intron | 35.0% | |
| ATCCAAACTCGTTCCAAAAA+GGG | - | chr3_1:54599574-54599593 | Msa0362850:intron | 35.0% | |
| !!! | GGAGAATTTTTTTGGGTGAA+TGG | - | chr3_1:54598590-54598609 | Msa0362850:CDS | 35.0% |
| ! | TACTTTTCTCTTCTCTCTCA+CGG | + | chr3_1:54598632-54598651 | None:intergenic | 35.0% |
| ATGTTGAAGTTGTGGCAAAA+GGG | + | chr3_1:54598713-54598732 | None:intergenic | 35.0% | |
| TATGTTGAAGTTGTGGCAAA+AGG | + | chr3_1:54598714-54598733 | None:intergenic | 35.0% | |
| CTTCACTATTAGTGGCAATA+TGG | + | chr3_1:54598746-54598765 | None:intergenic | 35.0% | |
| AGCTAGAACTTCACTATTAG+TGG | + | chr3_1:54598754-54598773 | None:intergenic | 35.0% | |
| TTCTTGTAGTGCTCTATTTG+GGG | - | chr3_1:54599036-54599055 | Msa0362850:CDS | 35.0% | |
| CTTGTCAAAAGGATTGTGAA+GGG | + | chr3_1:54599089-54599108 | None:intergenic | 35.0% | |
| ACTTGTCAAAAGGATTGTGA+AGG | + | chr3_1:54599090-54599109 | None:intergenic | 35.0% | |
| ATGTTGAACCTGATCCATAA+GGG | + | chr3_1:54599149-54599168 | None:intergenic | 35.0% | |
| ATTCTCCATCAGAAGAATGT+TGG | - | chr3_1:54599205-54599224 | Msa0362850:intron | 35.0% | |
| TGTGCTCTCTCCTATAAAAA+TGG | - | chr3_1:54599279-54599298 | Msa0362850:intron | 35.0% | |
| AACTCTTCATAAGTTGTGAC+CGG | + | chr3_1:54599310-54599329 | None:intergenic | 35.0% | |
| GTCACAACTTATGAAGAGTT+AGG | - | chr3_1:54599310-54599329 | Msa0362850:intron | 35.0% | |
| !! | CCCAAAGTTTGCTAAGAATT+TGG | + | chr3_1:54599405-54599424 | None:intergenic | 35.0% |
| AATTCTTAGCAAACTTTGGG+GGG | - | chr3_1:54599405-54599424 | Msa0362850:intron | 35.0% | |
| ATCCAAACTCGTTCCAAAAA+GGG | - | chr3_1:54599574-54599593 | Msa0362850:intron | 35.0% | |
| !! | TTTTGGGTGAATGGGGATTT+TGG | - | chr3_1:54598599-54598618 | Msa0362850:CDS | 40.0% |
| ! | TTTGGGTGAATGGGGATTTT+GGG | - | chr3_1:54598600-54598619 | Msa0362850:CDS | 40.0% |
| TTGTGGCAAAAGGGGAAAAA+AGG | + | chr3_1:54598704-54598723 | None:intergenic | 40.0% | |
| TGTTGAAGTTGTGGCAAAAG+GGG | + | chr3_1:54598712-54598731 | None:intergenic | 40.0% | |
| !! | AGTTCTAGCTTCATTCATCG+TGG | - | chr3_1:54598764-54598783 | Msa0362850:CDS | 40.0% |
| GATGCTACTAGCATCAGAAA+TGG | - | chr3_1:54598978-54598997 | Msa0362850:CDS | 40.0% | |
| ! | CAATCCTTTTGACAAGTTGC+AGG | - | chr3_1:54599093-54599112 | Msa0362850:CDS | 40.0% |
| TCTTCCTGCAACTTGTCAAA+AGG | + | chr3_1:54599100-54599119 | None:intergenic | 40.0% | |
| TTTGACAAGTTGCAGGAAGA+TGG | - | chr3_1:54599100-54599119 | Msa0362850:CDS | 40.0% | |
| !! | TTTTGAGGAGAATCCCCTTA+TGG | - | chr3_1:54599132-54599151 | Msa0362850:CDS | 40.0% |
| TGTTGAACCTGATCCATAAG+GGG | + | chr3_1:54599148-54599167 | None:intergenic | 40.0% | |
| GATGTTGAACCTGATCCATA+AGG | + | chr3_1:54599150-54599169 | None:intergenic | 40.0% | |
| TTCTGATGGAGAATGACAAC+AGG | + | chr3_1:54599199-54599218 | None:intergenic | 40.0% | |
| TCCTATAAAAATGGCCACTC+CGG | - | chr3_1:54599288-54599307 | Msa0362850:intron | 40.0% | |
| CTATTTCAGTGTCTGTGTCA+AGG | + | chr3_1:54599471-54599490 | None:intergenic | 40.0% | |
| CCTAACTTTCTGCTGAACTT+TGG | + | chr3_1:54599496-54599515 | None:intergenic | 40.0% | |
| CCAAAGTTCAGCAGAAAGTT+AGG | - | chr3_1:54599493-54599512 | Msa0362850:intron | 40.0% | |
| CATCCAAACTCGTTCCAAAA+AGG | - | chr3_1:54599573-54599592 | Msa0362850:intron | 40.0% | |
| !! | TTTTGGGTGAATGGGGATTT+TGG | - | chr3_1:54598599-54598618 | Msa0362850:CDS | 40.0% |
| ! | TTTGGGTGAATGGGGATTTT+GGG | - | chr3_1:54598600-54598619 | Msa0362850:CDS | 40.0% |
| TTGTGGCAAAAGGGGAAAAA+AGG | + | chr3_1:54598704-54598723 | None:intergenic | 40.0% | |
| TGTTGAAGTTGTGGCAAAAG+GGG | + | chr3_1:54598712-54598731 | None:intergenic | 40.0% | |
| !! | AGTTCTAGCTTCATTCATCG+TGG | - | chr3_1:54598764-54598783 | Msa0362850:CDS | 40.0% |
| GATGCTACTAGCATCAGAAA+TGG | - | chr3_1:54598978-54598997 | Msa0362850:CDS | 40.0% | |
| ! | CAATCCTTTTGACAAGTTGC+AGG | - | chr3_1:54599093-54599112 | Msa0362850:CDS | 40.0% |
| TCTTCCTGCAACTTGTCAAA+AGG | + | chr3_1:54599100-54599119 | None:intergenic | 40.0% | |
| TTTGACAAGTTGCAGGAAGA+TGG | - | chr3_1:54599100-54599119 | Msa0362850:CDS | 40.0% | |
| !! | TTTTGAGGAGAATCCCCTTA+TGG | - | chr3_1:54599132-54599151 | Msa0362850:CDS | 40.0% |
| TGTTGAACCTGATCCATAAG+GGG | + | chr3_1:54599148-54599167 | None:intergenic | 40.0% | |
| GATGTTGAACCTGATCCATA+AGG | + | chr3_1:54599150-54599169 | None:intergenic | 40.0% | |
| TTCTGATGGAGAATGACAAC+AGG | + | chr3_1:54599199-54599218 | None:intergenic | 40.0% | |
| TCCTATAAAAATGGCCACTC+CGG | - | chr3_1:54599288-54599307 | Msa0362850:intron | 40.0% | |
| CTATTTCAGTGTCTGTGTCA+AGG | + | chr3_1:54599471-54599490 | None:intergenic | 40.0% | |
| CCTAACTTTCTGCTGAACTT+TGG | + | chr3_1:54599496-54599515 | None:intergenic | 40.0% | |
| CCAAAGTTCAGCAGAAAGTT+AGG | - | chr3_1:54599493-54599512 | Msa0362850:intron | 40.0% | |
| CATCCAAACTCGTTCCAAAA+AGG | - | chr3_1:54599573-54599592 | Msa0362850:intron | 40.0% | |
| GAGAGAGAGAGTGGAAGATA+GGG | - | chr3_1:54598662-54598681 | Msa0362850:CDS | 45.0% | |
| TTGTAGTGCTCTATTTGGGG+TGG | - | chr3_1:54599039-54599058 | Msa0362850:CDS | 45.0% | |
| TTGTGAAGGGCTAAAGCAGA+GGG | + | chr3_1:54599076-54599095 | None:intergenic | 45.0% | |
| ATTGTGAAGGGCTAAAGCAG+AGG | + | chr3_1:54599077-54599096 | None:intergenic | 45.0% | |
| !!! | ACCGGAGTGGCCATTTTTAT+AGG | + | chr3_1:54599292-54599311 | None:intergenic | 45.0% |
| TTCATAAGTTGTGACCGGAG+TGG | + | chr3_1:54599305-54599324 | None:intergenic | 45.0% | |
| AAAGGCAGGGTTCATGCTAT+TGG | - | chr3_1:54599340-54599359 | Msa0362850:intron | 45.0% | |
| AAGAGTAGCAGCTCTACAAG+AGG | - | chr3_1:54599517-54599536 | Msa0362850:intron | 45.0% | |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | + | chr3_1:54599579-54599598 | None:intergenic | 45.0% |
| GAGAGAGAGAGTGGAAGATA+GGG | - | chr3_1:54598662-54598681 | Msa0362850:CDS | 45.0% | |
| TTGTAGTGCTCTATTTGGGG+TGG | - | chr3_1:54599039-54599058 | Msa0362850:CDS | 45.0% | |
| TTGTGAAGGGCTAAAGCAGA+GGG | + | chr3_1:54599076-54599095 | None:intergenic | 45.0% | |
| ATTGTGAAGGGCTAAAGCAG+AGG | + | chr3_1:54599077-54599096 | None:intergenic | 45.0% | |
| !!! | ACCGGAGTGGCCATTTTTAT+AGG | + | chr3_1:54599292-54599311 | None:intergenic | 45.0% |
| TTCATAAGTTGTGACCGGAG+TGG | + | chr3_1:54599305-54599324 | None:intergenic | 45.0% | |
| AAAGGCAGGGTTCATGCTAT+TGG | - | chr3_1:54599340-54599359 | Msa0362850:intron | 45.0% | |
| AAGAGTAGCAGCTCTACAAG+AGG | - | chr3_1:54599517-54599536 | Msa0362850:intron | 45.0% | |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | + | chr3_1:54599579-54599598 | None:intergenic | 45.0% |
| !!! | ATTTTATAAGAAATATAAAT+TGG | - | chr3_1:54598916-54598935 | Msa0362850:CDS | 5.0% |
| !!! | ATTTTATAAGAAATATAAAT+TGG | - | chr3_1:54598916-54598935 | Msa0362850:CDS | 5.0% |
| CGAGAGAGAGAGTGGAAGAT+AGG | - | chr3_1:54598661-54598680 | Msa0362850:CDS | 50.0% | |
| GGAGAATCCCCTTATGGATC+AGG | - | chr3_1:54599138-54599157 | Msa0362850:CDS | 50.0% | |
| CCATCAGAAGAATGTTGGCC+CGG | - | chr3_1:54599210-54599229 | Msa0362850:intron | 50.0% | |
| CCAACAGGAATAGCAGCCTT+GGG | + | chr3_1:54599241-54599260 | None:intergenic | 50.0% | |
| CCAAGGCTGCTATTCCTGTT+GGG | - | chr3_1:54599239-54599258 | Msa0362850:intron | 50.0% | |
| CAAGGCTGCTATTCCTGTTG+GGG | - | chr3_1:54599240-54599259 | Msa0362850:intron | 50.0% | |
| ! | TAGGAGAGAGCACAACCTTG+TGG | + | chr3_1:54599273-54599292 | None:intergenic | 50.0% |
| AGCATGAACCCTGCCTTTGT+CGG | + | chr3_1:54599338-54599357 | None:intergenic | 50.0% | |
| ! | TAGCAAACTTTGGGGGGATG+TGG | - | chr3_1:54599411-54599430 | Msa0362850:intron | 50.0% |
| GACTCTGACCACACAACAGA+TGG | - | chr3_1:54599436-54599455 | Msa0362850:intron | 50.0% | |
| CCATAGTGCCATCTGTTGTG+TGG | + | chr3_1:54599447-54599466 | None:intergenic | 50.0% | |
| CCACACAACAGATGGCACTA+TGG | - | chr3_1:54599444-54599463 | Msa0362850:intron | 50.0% | |
| AGCAGCTCTACAAGAGGCAA+AGG | - | chr3_1:54599523-54599542 | Msa0362850:intron | 50.0% | |
| CTCTACAAGAGGCAAAGGCT+TGG | - | chr3_1:54599528-54599547 | Msa0362850:intron | 50.0% | |
| ACAAGAGGCAAAGGCTTGGA+TGG | - | chr3_1:54599532-54599551 | Msa0362850:intron | 50.0% | |
| CGAGAGAGAGAGTGGAAGAT+AGG | - | chr3_1:54598661-54598680 | Msa0362850:CDS | 50.0% | |
| GGAGAATCCCCTTATGGATC+AGG | - | chr3_1:54599138-54599157 | Msa0362850:CDS | 50.0% | |
| CCATCAGAAGAATGTTGGCC+CGG | - | chr3_1:54599210-54599229 | Msa0362850:intron | 50.0% | |
| CCAACAGGAATAGCAGCCTT+GGG | + | chr3_1:54599241-54599260 | None:intergenic | 50.0% | |
| CCAAGGCTGCTATTCCTGTT+GGG | - | chr3_1:54599239-54599258 | Msa0362850:intron | 50.0% | |
| CAAGGCTGCTATTCCTGTTG+GGG | - | chr3_1:54599240-54599259 | Msa0362850:intron | 50.0% | |
| ! | TAGGAGAGAGCACAACCTTG+TGG | + | chr3_1:54599273-54599292 | None:intergenic | 50.0% |
| AGCATGAACCCTGCCTTTGT+CGG | + | chr3_1:54599338-54599357 | None:intergenic | 50.0% | |
| ! | TAGCAAACTTTGGGGGGATG+TGG | - | chr3_1:54599411-54599430 | Msa0362850:intron | 50.0% |
| GACTCTGACCACACAACAGA+TGG | - | chr3_1:54599436-54599455 | Msa0362850:intron | 50.0% | |
| CCATAGTGCCATCTGTTGTG+TGG | + | chr3_1:54599447-54599466 | None:intergenic | 50.0% | |
| CCACACAACAGATGGCACTA+TGG | - | chr3_1:54599444-54599463 | Msa0362850:intron | 50.0% | |
| AGCAGCTCTACAAGAGGCAA+AGG | - | chr3_1:54599523-54599542 | Msa0362850:intron | 50.0% | |
| CTCTACAAGAGGCAAAGGCT+TGG | - | chr3_1:54599528-54599547 | Msa0362850:intron | 50.0% | |
| ACAAGAGGCAAAGGCTTGGA+TGG | - | chr3_1:54599532-54599551 | Msa0362850:intron | 50.0% | |
| CAGCAGATCGAGAGAGAGAG+TGG | - | chr3_1:54598653-54598672 | Msa0362850:CDS | 55.0% | |
| CCGGGCCAACATTCTTCTGA+TGG | + | chr3_1:54599213-54599232 | None:intergenic | 55.0% | |
| ATAGCAGCCTTGGGAGGAAC+CGG | + | chr3_1:54599232-54599251 | None:intergenic | 55.0% | |
| ACAGGAATAGCAGCCTTGGG+AGG | + | chr3_1:54599238-54599257 | None:intergenic | 55.0% | |
| CCCAAGGCTGCTATTCCTGT+TGG | - | chr3_1:54599238-54599257 | Msa0362850:intron | 55.0% | |
| CCCAACAGGAATAGCAGCCT+TGG | + | chr3_1:54599242-54599261 | None:intergenic | 55.0% | |
| TTGTGGTGAGACTCCCCAAC+AGG | + | chr3_1:54599256-54599275 | None:intergenic | 55.0% | |
| TGTTGGGGAGTCTCACCACA+AGG | - | chr3_1:54599255-54599274 | Msa0362850:intron | 55.0% | |
| GAAGAGTTAGGCCCCGACAA+AGG | - | chr3_1:54599322-54599341 | Msa0362850:intron | 55.0% | |
| CATGAACCCTGCCTTTGTCG+GGG | + | chr3_1:54599336-54599355 | None:intergenic | 55.0% | |
| GCATGAACCCTGCCTTTGTC+GGG | + | chr3_1:54599337-54599356 | None:intergenic | 55.0% | |
| GGCAGGGTTCATGCTATTGG+TGG | - | chr3_1:54599343-54599362 | Msa0362850:intron | 55.0% | |
| ! | CAAACTTTGGGGGGATGTGG+TGG | - | chr3_1:54599414-54599433 | Msa0362850:intron | 55.0% |
| CAGCAGATCGAGAGAGAGAG+TGG | - | chr3_1:54598653-54598672 | Msa0362850:CDS | 55.0% | |
| CCGGGCCAACATTCTTCTGA+TGG | + | chr3_1:54599213-54599232 | None:intergenic | 55.0% | |
| ATAGCAGCCTTGGGAGGAAC+CGG | + | chr3_1:54599232-54599251 | None:intergenic | 55.0% | |
| ACAGGAATAGCAGCCTTGGG+AGG | + | chr3_1:54599238-54599257 | None:intergenic | 55.0% | |
| CCCAAGGCTGCTATTCCTGT+TGG | - | chr3_1:54599238-54599257 | Msa0362850:intron | 55.0% | |
| CCCAACAGGAATAGCAGCCT+TGG | + | chr3_1:54599242-54599261 | None:intergenic | 55.0% | |
| TTGTGGTGAGACTCCCCAAC+AGG | + | chr3_1:54599256-54599275 | None:intergenic | 55.0% | |
| TGTTGGGGAGTCTCACCACA+AGG | - | chr3_1:54599255-54599274 | Msa0362850:intron | 55.0% | |
| GAAGAGTTAGGCCCCGACAA+AGG | - | chr3_1:54599322-54599341 | Msa0362850:intron | 55.0% | |
| CATGAACCCTGCCTTTGTCG+GGG | + | chr3_1:54599336-54599355 | None:intergenic | 55.0% | |
| GCATGAACCCTGCCTTTGTC+GGG | + | chr3_1:54599337-54599356 | None:intergenic | 55.0% | |
| GGCAGGGTTCATGCTATTGG+TGG | - | chr3_1:54599343-54599362 | Msa0362850:intron | 55.0% | |
| ! | CAAACTTTGGGGGGATGTGG+TGG | - | chr3_1:54599414-54599433 | Msa0362850:intron | 55.0% |
| TAGCAGCCTTGGGAGGAACC+GGG | + | chr3_1:54599231-54599250 | None:intergenic | 60.0% | |
| AGTTAGGCCCCGACAAAGGC+AGG | - | chr3_1:54599326-54599345 | Msa0362850:intron | 60.0% | |
| GTTAGGCCCCGACAAAGGCA+GGG | - | chr3_1:54599327-54599346 | Msa0362850:intron | 60.0% | |
| TAGCAGCCTTGGGAGGAACC+GGG | + | chr3_1:54599231-54599250 | None:intergenic | 60.0% | |
| AGTTAGGCCCCGACAAAGGC+AGG | - | chr3_1:54599326-54599345 | Msa0362850:intron | 60.0% | |
| GTTAGGCCCCGACAAAGGCA+GGG | - | chr3_1:54599327-54599346 | Msa0362850:intron | 60.0% | |
| TGTTGGCCCGGTTCCTCCCA+AGG | - | chr3_1:54599222-54599241 | Msa0362850:intron | 65.0% | |
| TGTTGGCCCGGTTCCTCCCA+AGG | - | chr3_1:54599222-54599241 | Msa0362850:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 54598588 | 54599630 | 54598588 | ID=Msa0362850;Name=Msa0362850 |
| chr3_1 | mRNA | 54598588 | 54599630 | 54598588 | ID=Msa0362850-mRNA-1;Parent=Msa0362850;Name=Msa0362850-mRNA-1;_AED=0.70;_eAED=0.70;_QI=0|0|0|0.5|1|1|2|0|200 |
| chr3_1 | exon | 54599614 | 54599630 | 54599614 | ID=Msa0362850-mRNA-1:exon:9907;Parent=Msa0362850-mRNA-1 |
| chr3_1 | exon | 54598588 | 54599173 | 54598588 | ID=Msa0362850-mRNA-1:exon:9906;Parent=Msa0362850-mRNA-1 |
| chr3_1 | CDS | 54599614 | 54599630 | 54599614 | ID=Msa0362850-mRNA-1:cds;Parent=Msa0362850-mRNA-1 |
| chr3_1 | CDS | 54598588 | 54599173 | 54598588 | ID=Msa0362850-mRNA-1:cds;Parent=Msa0362850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
