AlfalfaGEDB | Msa1351080

M. sativa cultivar zhongmu-4 / Msa1351080

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Trembl:

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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0362850	Msa1351080	0.801497	8.755537e-49	-8.615850e-47
Msa0443750	Msa1351080	0.827329	1.661748e-54	-8.615850e-47
Msa0533290	Msa1351080	0.836181	1.087784e-56	-8.615850e-47
Msa0533430	Msa1351080	0.814773	1.298482e-51	-8.615850e-47
Msa0629850	Msa1351080	0.814472	1.514132e-51	-8.615850e-47
Msa0629930	Msa1351080	0.817623	2.995699e-52	-8.615850e-47
Msa0629940	Msa1351080	0.810724	9.996187e-51	-8.615850e-47
Msa0782080	Msa1351080	0.806364	8.527379e-50	-8.615850e-47
Msa0818030	Msa1351080	0.801906	7.219515e-49	-8.615850e-47
Msa0858360	Msa1351080	0.825247	5.202359e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 18 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCCGGAAGGTTTGTATG+TGG	0.633121	tig0012121:+3885	Msa1351080:CDS
AATTGTACCACGCATTGCTA+AGG	0.531736	tig0012121:-3591	None:intergenic
ACTTGTTCAGAAACTCCGGA+AGG	0.630459	tig0012121:+3874	Msa1351080:CDS
ATAAACTTGTTCAGAAACTC+CGG	0.563498	tig0012121:+3870	Msa1351080:CDS
CTGACGATGGCAGGGGACGA+GGG	0.613499	tig0012121:+3791	Msa1351080:CDS
GATGTTTCCAAATCTGACGA+TGG	0.663090	tig0012121:+3778	Msa1351080:CDS
GCTAAGGTTTCCACGTGAAT+AGG	0.359375	tig0012121:-3575	None:intergenic
GTGGAAACCTTAGCAATGCG+TGG	0.686228	tig0012121:+3584	Msa1351080:CDS
TACAAGTGATGCTTGTTATT+TGG	0.173222	tig0012121:+3636	Msa1351080:CDS
TCCAAATCTGACGATGGCAG+GGG	0.572024	tig0012121:+3784	Msa1351080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTGAAAACAATTATCTAC+TGG	+	tig0012121:3834-3853	Msa1351080:CDS	30.0%
AATTGTACCACGCATTGCTA+AGG	-	tig0012121:3594-3613	None:intergenic	40.0%
GATGTTTCCAAATCTGACGA+TGG	+	tig0012121:3778-3797	Msa1351080:CDS	40.0%
TTCCCTGAAAAGCTAGAATC+CGG	-	tig0012121:3919-3938	None:intergenic	40.0%
GCTAAGGTTTCCACGTGAAT+AGG	-	tig0012121:3578-3597	None:intergenic	45.0%
TTTCCAAATCTGACGATGGC+AGG	+	tig0012121:3782-3801	Msa1351080:CDS	45.0%
TTCCAAATCTGACGATGGCA+GGG	+	tig0012121:3783-3802	Msa1351080:CDS	45.0%
ACTTGTTCAGAAACTCCGGA+AGG	+	tig0012121:3874-3893	Msa1351080:CDS	45.0%
AACTCCGGAAGGTTTGTATG+TGG	+	tig0012121:3885-3904	Msa1351080:CDS	45.0%
TGTGCCACATACAAACCTTC+CGG	-	tig0012121:3892-3911	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0012121	gene	3560	3988	3560	ID=Msa1351080;Name=Msa1351080
tig0012121	mRNA	3560	3988	3560	ID=Msa1351080-mRNA-1;Parent=Msa1351080;Name=Msa1351080-mRNA-1;_AED=0.44;_eAED=0.59;_QI=0\|0\|0\|1\|1\|1\|2\|0\|113
tig0012121	exon	3560	3657	3560	ID=Msa1351080-mRNA-1:exon:7654;Parent=Msa1351080-mRNA-1
tig0012121	exon	3745	3988	3745	ID=Msa1351080-mRNA-1:exon:7655;Parent=Msa1351080-mRNA-1
tig0012121	CDS	3560	3657	3560	ID=Msa1351080-mRNA-1:cds;Parent=Msa1351080-mRNA-1
tig0012121	CDS	3745	3988	3745	ID=Msa1351080-mRNA-1:cds;Parent=Msa1351080-mRNA-1

Gene Sequence	>Msa1351080 ATGGGTGCTTCTCGTCCTATTCACGTGGAAACCTTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAAATTTTTTACAAGTGATGCTTGTTATTTGGATGCTGACAAACGTAGAAGATTTCACAATAAAGATGTTTCCAAATCTGACGATGGCAGGGGACGAGGGTGTCGATCAGTGCATGACTTTGCTGAAAACAATTATCTACTGGAACTTAAATTTGTATAAACTTGTTCAGAAACTCCGGAAGGTTTGTATGTGGCACATTTTCCGGATTCTAGCTTTTCAGGGAAACACAATTTTGTATGTAGGTAGAAGTGTTTCCCTATTTTATTTTTGCTAG
Protein sequence	>Msa1351080 MGASRPIHVETLAMRGTIEEQMLNFLQVMLVIWMLTNVEDFTIKMFPNLTMAGDEGVDQCMTLLKTIIYWNLNLYKLVQKLRKVCMWHIFRILAFQGNTILYVGRSVSLFYFC*