Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362860 | AES99848.1 | 60.547 | 256 | 66 | 2 | 9 | 264 | 16 | 236 | 1.02e-94 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362860 | G7KHA5 | 60.547 | 256 | 66 | 2 | 9 | 264 | 16 | 236 | 4.89e-95 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0362850 | Msa0362860 | 0.813862 | 2.064568e-51 | -8.615850e-47 |
| Msa0362860 | Msa0858360 | 0.817470 | 3.243320e-52 | -8.615850e-47 |
| Msa0362860 | Msa0902020 | 0.801533 | 8.609935e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362860 | MtrunA17_Chr5g0439091 | 81.818 | 99 | 18 | 0 | 9 | 107 | 16 | 114 | 5.27e-55 | 174 |
| Msa0362860 | MtrunA17_Chr1g0178241 | 65.854 | 123 | 42 | 0 | 9 | 131 | 151 | 273 | 1.62e-54 | 187 |
| Msa0362860 | MtrunA17_Chr7g0229881 | 46.734 | 199 | 82 | 4 | 13 | 192 | 126 | 319 | 3.75e-53 | 177 |
| Msa0362860 | MtrunA17_Chr7g0271301 | 56.098 | 123 | 54 | 0 | 9 | 131 | 138 | 260 | 2.01e-48 | 164 |
| Msa0362860 | MtrunA17_Chr5g0441151 | 46.400 | 125 | 62 | 2 | 9 | 128 | 88 | 212 | 7.52e-37 | 134 |
| Msa0362860 | MtrunA17_Chr7g0235231 | 48.214 | 112 | 58 | 0 | 17 | 128 | 86 | 197 | 1.93e-35 | 130 |
| Msa0362860 | MtrunA17_Chr1g0171991 | 42.857 | 119 | 68 | 0 | 9 | 127 | 45 | 163 | 8.60e-31 | 119 |
| Msa0362860 | MtrunA17_Chr5g0398411 | 60.606 | 99 | 37 | 1 | 156 | 254 | 1 | 97 | 6.08e-30 | 113 |
| Msa0362860 | MtrunA17_Chr6g0460181 | 37.037 | 81 | 51 | 0 | 66 | 146 | 1 | 81 | 1.60e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362860 | AT2G01050.1 | 33.628 | 113 | 71 | 1 | 15 | 127 | 150 | 258 | 5.06e-16 | 78.6 |
Find 67 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCTTAGTAGGAGATTT+GGG | 0.212872 | 3_1:-54603649 | Msa0362860:CDS |
| TGTGCCAATTGCAAAATTCT+AGG | 0.219952 | 3_1:-54603506 | Msa0362860:CDS |
| CTTGCCATTCAACTCACTTC+TGG | 0.228865 | 3_1:+54603415 | None:intergenic |
| TGCATTTGCCTCAAGAATAT+TGG | 0.252998 | 3_1:-54603733 | Msa0362860:CDS |
| GACTCTATACTGACTCTAAA+AGG | 0.267555 | 3_1:+54602974 | None:intergenic |
| TTTGAGATTGCCTCTAGTTT+AGG | 0.284519 | 3_1:-54603695 | Msa0362860:CDS |
| TTATGCTTAAAACAAGATAT+TGG | 0.303969 | 3_1:-54603817 | Msa0362860:CDS |
| CTCAAACCCATGCTCAAATC+TGG | 0.313183 | 3_1:-54603766 | Msa0362860:CDS |
| AACCCTCCACTACAAGAAAA+TGG | 0.322713 | 3_1:-54603053 | Msa0362860:CDS |
| GCTACTCTTAGTAGGAGATT+TGG | 0.337671 | 3_1:-54603650 | Msa0362860:CDS |
| GCCACAATCTTCAAAATTGC+AGG | 0.353733 | 3_1:-54603484 | Msa0362860:CDS |
| TCCTTCCTTGTACAAATTCT+CGG | 0.356639 | 3_1:+54603124 | None:intergenic |
| ATTCCCTCTCTCTGCCTAAC+AGG | 0.368158 | 3_1:-54603337 | Msa0362860:CDS |
| GCTGGAAAATGGATGCTAAA+AGG | 0.369142 | 3_1:-54603017 | Msa0362860:CDS |
| AGGTAGGCTGCTTCTCATAT+TGG | 0.385159 | 3_1:+54603531 | None:intergenic |
| CAAAATTGCAGGAAATTGAA+TGG | 0.395215 | 3_1:-54603473 | Msa0362860:CDS |
| TTGGGCAAGAAGCGGGTCTC+TGG | 0.431843 | 3_1:-54603371 | Msa0362860:CDS |
| CACGTTGATACTAACATGTT+GGG | 0.434835 | 3_1:-54603389 | Msa0362860:CDS |
| GCGGGTCTCTGGTGCTCAAA+AGG | 0.438044 | 3_1:-54603360 | Msa0362860:CDS |
| TAGATGATGGTCAGGTGAAT+TGG | 0.440030 | 3_1:+54603178 | None:intergenic |
| GGTTCTGCCTTGCTACATAA+AGG | 0.444314 | 3_1:-54603305 | Msa0362860:CDS |
| ATCACTGCTATCATGAAAGA+TGG | 0.446378 | 3_1:-54603083 | Msa0362860:CDS |
| ACCTGACCATCATCTACGTC+CGG | 0.451169 | 3_1:-54603171 | Msa0362860:CDS |
| TTTGTACAAGGAAGGAGATA+AGG | 0.452098 | 3_1:-54603117 | Msa0362860:CDS |
| CCCGGACGTAGATGATGGTC+AGG | 0.482288 | 3_1:+54603170 | None:intergenic |
| CTTCTCATATTGGATATCAA+TGG | 0.488201 | 3_1:+54603541 | None:intergenic |
| ATGGGTTTGAGCTTGAGCAT+GGG | 0.494869 | 3_1:+54603778 | None:intergenic |
| TTGATGATGCTACTCTTAGT+AGG | 0.502407 | 3_1:-54603658 | Msa0362860:CDS |
| TGATAATACACATTGTGAAC+AGG | 0.507429 | 3_1:-54603225 | Msa0362860:CDS |
| GAACCAGCTTCATTCCTGTT+AGG | 0.507953 | 3_1:+54603323 | None:intergenic |
| CATGGGTTTGAGCTTGAGCA+TGG | 0.515830 | 3_1:+54603777 | None:intergenic |
| CTCTAGTTTAGGTACCCCTC+TGG | 0.516880 | 3_1:-54603684 | Msa0362860:CDS |
| TGGGTTTGAGCTTGAGCATG+GGG | 0.522352 | 3_1:+54603779 | None:intergenic |
| TCTGATCCAGATTTGAGCAT+GGG | 0.522539 | 3_1:+54603760 | None:intergenic |
| AGCAGTTCCTTTATGTAGCA+AGG | 0.530667 | 3_1:+54603298 | None:intergenic |
| AGAGCAATTATTTGAGTCAG+TGG | 0.531169 | 3_1:-54603591 | Msa0362860:CDS |
| AAAACAAGATATTGGACAAG+AGG | 0.539508 | 3_1:-54603809 | Msa0362860:CDS |
| ACACGTTGATACTAACATGT+TGG | 0.541039 | 3_1:-54603390 | Msa0362860:CDS |
| AATGGATCTAGCAATAATGA+AGG | 0.541912 | 3_1:-54603455 | Msa0362860:CDS |
| TAACATGTTGGGCAAGAAGC+GGG | 0.543345 | 3_1:-54603378 | Msa0362860:CDS |
| TTGCAATTGGCACAAAAGGT+AGG | 0.548357 | 3_1:+54603515 | None:intergenic |
| ATTTGCCTCAAGAATATTGG+AGG | 0.555414 | 3_1:-54603730 | Msa0362860:CDS |
| AGCTACCCGGACGTAGATGA+TGG | 0.559424 | 3_1:+54603165 | None:intergenic |
| CTACATAAAGGAACTGCTAA+GGG | 0.560467 | 3_1:-54603293 | Msa0362860:CDS |
| GCTACATAAAGGAACTGCTA+AGG | 0.564427 | 3_1:-54603294 | Msa0362860:CDS |
| CTGCCTAACAGGAATGAAGC+TGG | 0.571312 | 3_1:-54603326 | Msa0362860:CDS |
| GTCTGATCCAGATTTGAGCA+TGG | 0.574253 | 3_1:+54603759 | None:intergenic |
| GTCTTCCTCCAATATTCTTG+AGG | 0.577591 | 3_1:+54603725 | None:intergenic |
| TCACTGCTATCATGAAAGAT+GGG | 0.584763 | 3_1:-54603082 | Msa0362860:CDS |
| GTACAAGGAAGGAGATAAGG+AGG | 0.585455 | 3_1:-54603114 | Msa0362860:CDS |
| TACTCTTAGTAGGAGATTTG+GGG | 0.585746 | 3_1:-54603648 | Msa0362860:CDS |
| CATTCCTGTTAGGCAGAGAG+AGG | 0.590838 | 3_1:+54603333 | None:intergenic |
| ACCGAGAATTTGTACAAGGA+AGG | 0.592668 | 3_1:-54603125 | Msa0362860:CDS |
| CAGTGGTTGTTGAAACCGAT+GGG | 0.595320 | 3_1:-54603574 | Msa0362860:CDS |
| AACACCAGAAGTGAGTTGAA+TGG | 0.602594 | 3_1:-54603419 | Msa0362860:CDS |
| GGATGCTAAAAGGCAAATTG+TGG | 0.608316 | 3_1:-54603007 | Msa0362860:CDS |
| CCTGACCATCATCTACGTCC+GGG | 0.612570 | 3_1:-54603170 | Msa0362860:CDS |
| TGTAAGTCATTCAAGCTACC+CGG | 0.624024 | 3_1:+54603152 | None:intergenic |
| TAGCATCATCAATATCCAGA+GGG | 0.624526 | 3_1:+54603669 | None:intergenic |
| ATTCCTGTTAGGCAGAGAGA+GGG | 0.633272 | 3_1:+54603334 | None:intergenic |
| CAGAGGGGTACCTAAACTAG+AGG | 0.639625 | 3_1:+54603685 | None:intergenic |
| TGACACCGAGAATTTGTACA+AGG | 0.642996 | 3_1:-54603129 | Msa0362860:CDS |
| CTAACATGTTGGGCAAGAAG+CGG | 0.645173 | 3_1:-54603379 | Msa0362860:CDS |
| TCAGTGGTTGTTGAAACCGA+TGG | 0.649864 | 3_1:-54603575 | Msa0362860:CDS |
| AATGGACAAAGCGTACCCAT+CGG | 0.667110 | 3_1:+54603559 | None:intergenic |
| GTAGCATCATCAATATCCAG+AGG | 0.700736 | 3_1:+54603668 | None:intergenic |
| AGCATCATCAATATCCAGAG+GGG | 0.732336 | 3_1:+54603670 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGCTTAAAACAAGATAT+TGG | - | chr3_1:54603011-54603030 | Msa0362860:CDS | 20.0% |
| !! | TTATGCTTAAAACAAGATAT+TGG | - | chr3_1:54603011-54603030 | Msa0362860:CDS | 20.0% |
| AAAACAAGATATTGGACAAG+AGG | - | chr3_1:54603019-54603038 | Msa0362860:CDS | 30.0% | |
| CTTCTCATATTGGATATCAA+TGG | + | chr3_1:54603290-54603309 | None:intergenic | 30.0% | |
| ! | AATTTTGCAATTGGCACAAA+AGG | + | chr3_1:54603320-54603339 | None:intergenic | 30.0% |
| CAAAATTGCAGGAAATTGAA+TGG | - | chr3_1:54603355-54603374 | Msa0362860:CDS | 30.0% | |
| AATGGATCTAGCAATAATGA+AGG | - | chr3_1:54603373-54603392 | Msa0362860:CDS | 30.0% | |
| TGATAATACACATTGTGAAC+AGG | - | chr3_1:54603603-54603622 | Msa0362860:CDS | 30.0% | |
| ! | AAAACACCATTTTCTTGTAG+TGG | + | chr3_1:54603784-54603803 | None:intergenic | 30.0% |
| ! | TTTTAGATTCAGCTGGAAAA+TGG | - | chr3_1:54603800-54603819 | Msa0362860:CDS | 30.0% |
| AAAACAAGATATTGGACAAG+AGG | - | chr3_1:54603019-54603038 | Msa0362860:CDS | 30.0% | |
| CTTCTCATATTGGATATCAA+TGG | + | chr3_1:54603290-54603309 | None:intergenic | 30.0% | |
| ! | AATTTTGCAATTGGCACAAA+AGG | + | chr3_1:54603320-54603339 | None:intergenic | 30.0% |
| CAAAATTGCAGGAAATTGAA+TGG | - | chr3_1:54603355-54603374 | Msa0362860:CDS | 30.0% | |
| AATGGATCTAGCAATAATGA+AGG | - | chr3_1:54603373-54603392 | Msa0362860:CDS | 30.0% | |
| TGATAATACACATTGTGAAC+AGG | - | chr3_1:54603603-54603622 | Msa0362860:CDS | 30.0% | |
| ! | AAAACACCATTTTCTTGTAG+TGG | + | chr3_1:54603784-54603803 | None:intergenic | 30.0% |
| ! | TTTTAGATTCAGCTGGAAAA+TGG | - | chr3_1:54603800-54603819 | Msa0362860:CDS | 30.0% |
| TGCATTTGCCTCAAGAATAT+TGG | - | chr3_1:54603095-54603114 | Msa0362860:CDS | 35.0% | |
| ATTTGCCTCAAGAATATTGG+AGG | - | chr3_1:54603098-54603117 | Msa0362860:CDS | 35.0% | |
| ! | TTTGAGATTGCCTCTAGTTT+AGG | - | chr3_1:54603133-54603152 | Msa0362860:CDS | 35.0% |
| TAGCATCATCAATATCCAGA+GGG | + | chr3_1:54603162-54603181 | None:intergenic | 35.0% | |
| !! | TTGATGATGCTACTCTTAGT+AGG | - | chr3_1:54603170-54603189 | Msa0362860:CDS | 35.0% |
| CTACTCTTAGTAGGAGATTT+GGG | - | chr3_1:54603179-54603198 | Msa0362860:CDS | 35.0% | |
| TACTCTTAGTAGGAGATTTG+GGG | - | chr3_1:54603180-54603199 | Msa0362860:CDS | 35.0% | |
| AGAGCAATTATTTGAGTCAG+TGG | - | chr3_1:54603237-54603256 | Msa0362860:CDS | 35.0% | |
| TGTGCCAATTGCAAAATTCT+AGG | - | chr3_1:54603322-54603341 | Msa0362860:CDS | 35.0% | |
| !! | TCCTGCAATTTTGAAGATTG+TGG | + | chr3_1:54603348-54603367 | None:intergenic | 35.0% |
| ACACGTTGATACTAACATGT+TGG | - | chr3_1:54603438-54603457 | Msa0362860:CDS | 35.0% | |
| CACGTTGATACTAACATGTT+GGG | - | chr3_1:54603439-54603458 | Msa0362860:CDS | 35.0% | |
| CTACATAAAGGAACTGCTAA+GGG | - | chr3_1:54603535-54603554 | Msa0362860:CDS | 35.0% | |
| TCCTTCCTTGTACAAATTCT+CGG | + | chr3_1:54603707-54603726 | None:intergenic | 35.0% | |
| TTTGTACAAGGAAGGAGATA+AGG | - | chr3_1:54603711-54603730 | Msa0362860:CDS | 35.0% | |
| ATCACTGCTATCATGAAAGA+TGG | - | chr3_1:54603745-54603764 | Msa0362860:CDS | 35.0% | |
| TCACTGCTATCATGAAAGAT+GGG | - | chr3_1:54603746-54603765 | Msa0362860:CDS | 35.0% | |
| !! | AATGGTGTTTTAGATTCAGC+TGG | - | chr3_1:54603793-54603812 | Msa0362860:CDS | 35.0% |
| TGCATTTGCCTCAAGAATAT+TGG | - | chr3_1:54603095-54603114 | Msa0362860:CDS | 35.0% | |
| ATTTGCCTCAAGAATATTGG+AGG | - | chr3_1:54603098-54603117 | Msa0362860:CDS | 35.0% | |
| ! | TTTGAGATTGCCTCTAGTTT+AGG | - | chr3_1:54603133-54603152 | Msa0362860:CDS | 35.0% |
| TAGCATCATCAATATCCAGA+GGG | + | chr3_1:54603162-54603181 | None:intergenic | 35.0% | |
| !! | TTGATGATGCTACTCTTAGT+AGG | - | chr3_1:54603170-54603189 | Msa0362860:CDS | 35.0% |
| CTACTCTTAGTAGGAGATTT+GGG | - | chr3_1:54603179-54603198 | Msa0362860:CDS | 35.0% | |
| TACTCTTAGTAGGAGATTTG+GGG | - | chr3_1:54603180-54603199 | Msa0362860:CDS | 35.0% | |
| AGAGCAATTATTTGAGTCAG+TGG | - | chr3_1:54603237-54603256 | Msa0362860:CDS | 35.0% | |
| TGTGCCAATTGCAAAATTCT+AGG | - | chr3_1:54603322-54603341 | Msa0362860:CDS | 35.0% | |
| !! | TCCTGCAATTTTGAAGATTG+TGG | + | chr3_1:54603348-54603367 | None:intergenic | 35.0% |
| ACACGTTGATACTAACATGT+TGG | - | chr3_1:54603438-54603457 | Msa0362860:CDS | 35.0% | |
| CACGTTGATACTAACATGTT+GGG | - | chr3_1:54603439-54603458 | Msa0362860:CDS | 35.0% | |
| CTACATAAAGGAACTGCTAA+GGG | - | chr3_1:54603535-54603554 | Msa0362860:CDS | 35.0% | |
| TCCTTCCTTGTACAAATTCT+CGG | + | chr3_1:54603707-54603726 | None:intergenic | 35.0% | |
| TTTGTACAAGGAAGGAGATA+AGG | - | chr3_1:54603711-54603730 | Msa0362860:CDS | 35.0% | |
| ATCACTGCTATCATGAAAGA+TGG | - | chr3_1:54603745-54603764 | Msa0362860:CDS | 35.0% | |
| TCACTGCTATCATGAAAGAT+GGG | - | chr3_1:54603746-54603765 | Msa0362860:CDS | 35.0% | |
| !! | AATGGTGTTTTAGATTCAGC+TGG | - | chr3_1:54603793-54603812 | Msa0362860:CDS | 35.0% |
| TCTGATCCAGATTTGAGCAT+GGG | + | chr3_1:54603071-54603090 | None:intergenic | 40.0% | |
| GTCTTCCTCCAATATTCTTG+AGG | + | chr3_1:54603106-54603125 | None:intergenic | 40.0% | |
| AGCATCATCAATATCCAGAG+GGG | + | chr3_1:54603161-54603180 | None:intergenic | 40.0% | |
| GTAGCATCATCAATATCCAG+AGG | + | chr3_1:54603163-54603182 | None:intergenic | 40.0% | |
| GCTACTCTTAGTAGGAGATT+TGG | - | chr3_1:54603178-54603197 | Msa0362860:CDS | 40.0% | |
| !! | GAGATTTGGGGTTTTTGCTA+GGG | - | chr3_1:54603192-54603211 | Msa0362860:CDS | 40.0% |
| TTGCAATTGGCACAAAAGGT+AGG | + | chr3_1:54603316-54603335 | None:intergenic | 40.0% | |
| ! | GTGGCCTAGAATTTTGCAAT+TGG | + | chr3_1:54603329-54603348 | None:intergenic | 40.0% |
| GCCACAATCTTCAAAATTGC+AGG | - | chr3_1:54603344-54603363 | Msa0362860:CDS | 40.0% | |
| ! | AACACCAGAAGTGAGTTGAA+TGG | - | chr3_1:54603409-54603428 | Msa0362860:CDS | 40.0% |
| AGCAGTTCCTTTATGTAGCA+AGG | + | chr3_1:54603533-54603552 | None:intergenic | 40.0% | |
| GCTACATAAAGGAACTGCTA+AGG | - | chr3_1:54603534-54603553 | Msa0362860:CDS | 40.0% | |
| ! | TAGATGATGGTCAGGTGAAT+TGG | + | chr3_1:54603653-54603672 | None:intergenic | 40.0% |
| TGTAAGTCATTCAAGCTACC+CGG | + | chr3_1:54603679-54603698 | None:intergenic | 40.0% | |
| TGACACCGAGAATTTGTACA+AGG | - | chr3_1:54603699-54603718 | Msa0362860:CDS | 40.0% | |
| ACCGAGAATTTGTACAAGGA+AGG | - | chr3_1:54603703-54603722 | Msa0362860:CDS | 40.0% | |
| AACCCTCCACTACAAGAAAA+TGG | - | chr3_1:54603775-54603794 | Msa0362860:CDS | 40.0% | |
| !! | CACCATTTTCTTGTAGTGGA+GGG | + | chr3_1:54603780-54603799 | None:intergenic | 40.0% |
| ! | ACACCATTTTCTTGTAGTGG+AGG | + | chr3_1:54603781-54603800 | None:intergenic | 40.0% |
| GCTGGAAAATGGATGCTAAA+AGG | - | chr3_1:54603811-54603830 | Msa0362860:CDS | 40.0% | |
| GGATGCTAAAAGGCAAATTG+TGG | - | chr3_1:54603821-54603840 | Msa0362860:CDS | 40.0% | |
| TCTGATCCAGATTTGAGCAT+GGG | + | chr3_1:54603071-54603090 | None:intergenic | 40.0% | |
| GTCTTCCTCCAATATTCTTG+AGG | + | chr3_1:54603106-54603125 | None:intergenic | 40.0% | |
| AGCATCATCAATATCCAGAG+GGG | + | chr3_1:54603161-54603180 | None:intergenic | 40.0% | |
| GTAGCATCATCAATATCCAG+AGG | + | chr3_1:54603163-54603182 | None:intergenic | 40.0% | |
| GCTACTCTTAGTAGGAGATT+TGG | - | chr3_1:54603178-54603197 | Msa0362860:CDS | 40.0% | |
| !! | GAGATTTGGGGTTTTTGCTA+GGG | - | chr3_1:54603192-54603211 | Msa0362860:CDS | 40.0% |
| TTGCAATTGGCACAAAAGGT+AGG | + | chr3_1:54603316-54603335 | None:intergenic | 40.0% | |
| ! | GTGGCCTAGAATTTTGCAAT+TGG | + | chr3_1:54603329-54603348 | None:intergenic | 40.0% |
| GCCACAATCTTCAAAATTGC+AGG | - | chr3_1:54603344-54603363 | Msa0362860:CDS | 40.0% | |
| ! | AACACCAGAAGTGAGTTGAA+TGG | - | chr3_1:54603409-54603428 | Msa0362860:CDS | 40.0% |
| AGCAGTTCCTTTATGTAGCA+AGG | + | chr3_1:54603533-54603552 | None:intergenic | 40.0% | |
| GCTACATAAAGGAACTGCTA+AGG | - | chr3_1:54603534-54603553 | Msa0362860:CDS | 40.0% | |
| ! | TAGATGATGGTCAGGTGAAT+TGG | + | chr3_1:54603653-54603672 | None:intergenic | 40.0% |
| TGTAAGTCATTCAAGCTACC+CGG | + | chr3_1:54603679-54603698 | None:intergenic | 40.0% | |
| TGACACCGAGAATTTGTACA+AGG | - | chr3_1:54603699-54603718 | Msa0362860:CDS | 40.0% | |
| ACCGAGAATTTGTACAAGGA+AGG | - | chr3_1:54603703-54603722 | Msa0362860:CDS | 40.0% | |
| AACCCTCCACTACAAGAAAA+TGG | - | chr3_1:54603775-54603794 | Msa0362860:CDS | 40.0% | |
| !! | CACCATTTTCTTGTAGTGGA+GGG | + | chr3_1:54603780-54603799 | None:intergenic | 40.0% |
| ! | ACACCATTTTCTTGTAGTGG+AGG | + | chr3_1:54603781-54603800 | None:intergenic | 40.0% |
| GCTGGAAAATGGATGCTAAA+AGG | - | chr3_1:54603811-54603830 | Msa0362860:CDS | 40.0% | |
| GGATGCTAAAAGGCAAATTG+TGG | - | chr3_1:54603821-54603840 | Msa0362860:CDS | 40.0% | |
| ATGGGTTTGAGCTTGAGCAT+GGG | + | chr3_1:54603053-54603072 | None:intergenic | 45.0% | |
| CTCAAACCCATGCTCAAATC+TGG | - | chr3_1:54603062-54603081 | Msa0362860:CDS | 45.0% | |
| GTCTGATCCAGATTTGAGCA+TGG | + | chr3_1:54603072-54603091 | None:intergenic | 45.0% | |
| !! | GGAGATTTGGGGTTTTTGCT+AGG | - | chr3_1:54603191-54603210 | Msa0362860:CDS | 45.0% |
| TCAGTGGTTGTTGAAACCGA+TGG | - | chr3_1:54603253-54603272 | Msa0362860:CDS | 45.0% | |
| CAGTGGTTGTTGAAACCGAT+GGG | - | chr3_1:54603254-54603273 | Msa0362860:CDS | 45.0% | |
| AATGGACAAAGCGTACCCAT+CGG | + | chr3_1:54603272-54603291 | None:intergenic | 45.0% | |
| AGGTAGGCTGCTTCTCATAT+TGG | + | chr3_1:54603300-54603319 | None:intergenic | 45.0% | |
| CTTGCCATTCAACTCACTTC+TGG | + | chr3_1:54603416-54603435 | None:intergenic | 45.0% | |
| CTAACATGTTGGGCAAGAAG+CGG | - | chr3_1:54603449-54603468 | Msa0362860:CDS | 45.0% | |
| TAACATGTTGGGCAAGAAGC+GGG | - | chr3_1:54603450-54603469 | Msa0362860:CDS | 45.0% | |
| ATTCCTGTTAGGCAGAGAGA+GGG | + | chr3_1:54603497-54603516 | None:intergenic | 45.0% | |
| GAACCAGCTTCATTCCTGTT+AGG | + | chr3_1:54603508-54603527 | None:intergenic | 45.0% | |
| GGTTCTGCCTTGCTACATAA+AGG | - | chr3_1:54603523-54603542 | Msa0362860:CDS | 45.0% | |
| GTACAAGGAAGGAGATAAGG+AGG | - | chr3_1:54603714-54603733 | Msa0362860:CDS | 45.0% | |
| ATGGGTTTGAGCTTGAGCAT+GGG | + | chr3_1:54603053-54603072 | None:intergenic | 45.0% | |
| CTCAAACCCATGCTCAAATC+TGG | - | chr3_1:54603062-54603081 | Msa0362860:CDS | 45.0% | |
| GTCTGATCCAGATTTGAGCA+TGG | + | chr3_1:54603072-54603091 | None:intergenic | 45.0% | |
| !! | GGAGATTTGGGGTTTTTGCT+AGG | - | chr3_1:54603191-54603210 | Msa0362860:CDS | 45.0% |
| TCAGTGGTTGTTGAAACCGA+TGG | - | chr3_1:54603253-54603272 | Msa0362860:CDS | 45.0% | |
| CAGTGGTTGTTGAAACCGAT+GGG | - | chr3_1:54603254-54603273 | Msa0362860:CDS | 45.0% | |
| AATGGACAAAGCGTACCCAT+CGG | + | chr3_1:54603272-54603291 | None:intergenic | 45.0% | |
| AGGTAGGCTGCTTCTCATAT+TGG | + | chr3_1:54603300-54603319 | None:intergenic | 45.0% | |
| CTTGCCATTCAACTCACTTC+TGG | + | chr3_1:54603416-54603435 | None:intergenic | 45.0% | |
| CTAACATGTTGGGCAAGAAG+CGG | - | chr3_1:54603449-54603468 | Msa0362860:CDS | 45.0% | |
| TAACATGTTGGGCAAGAAGC+GGG | - | chr3_1:54603450-54603469 | Msa0362860:CDS | 45.0% | |
| ATTCCTGTTAGGCAGAGAGA+GGG | + | chr3_1:54603497-54603516 | None:intergenic | 45.0% | |
| GAACCAGCTTCATTCCTGTT+AGG | + | chr3_1:54603508-54603527 | None:intergenic | 45.0% | |
| GGTTCTGCCTTGCTACATAA+AGG | - | chr3_1:54603523-54603542 | Msa0362860:CDS | 45.0% | |
| GTACAAGGAAGGAGATAAGG+AGG | - | chr3_1:54603714-54603733 | Msa0362860:CDS | 45.0% | |
| TGGGTTTGAGCTTGAGCATG+GGG | + | chr3_1:54603052-54603071 | None:intergenic | 50.0% | |
| CATGGGTTTGAGCTTGAGCA+TGG | + | chr3_1:54603054-54603073 | None:intergenic | 50.0% | |
| !! | CAGAGGGGTACCTAAACTAG+AGG | + | chr3_1:54603146-54603165 | None:intergenic | 50.0% |
| ! | CTCTAGTTTAGGTACCCCTC+TGG | - | chr3_1:54603144-54603163 | Msa0362860:CDS | 50.0% |
| ATTCCCTCTCTCTGCCTAAC+AGG | - | chr3_1:54603491-54603510 | Msa0362860:CDS | 50.0% | |
| CATTCCTGTTAGGCAGAGAG+AGG | + | chr3_1:54603498-54603517 | None:intergenic | 50.0% | |
| CTGCCTAACAGGAATGAAGC+TGG | - | chr3_1:54603502-54603521 | Msa0362860:CDS | 50.0% | |
| ACCTGACCATCATCTACGTC+CGG | - | chr3_1:54603657-54603676 | Msa0362860:CDS | 50.0% | |
| TGGGTTTGAGCTTGAGCATG+GGG | + | chr3_1:54603052-54603071 | None:intergenic | 50.0% | |
| CATGGGTTTGAGCTTGAGCA+TGG | + | chr3_1:54603054-54603073 | None:intergenic | 50.0% | |
| !! | CAGAGGGGTACCTAAACTAG+AGG | + | chr3_1:54603146-54603165 | None:intergenic | 50.0% |
| ! | CTCTAGTTTAGGTACCCCTC+TGG | - | chr3_1:54603144-54603163 | Msa0362860:CDS | 50.0% |
| ATTCCCTCTCTCTGCCTAAC+AGG | - | chr3_1:54603491-54603510 | Msa0362860:CDS | 50.0% | |
| CATTCCTGTTAGGCAGAGAG+AGG | + | chr3_1:54603498-54603517 | None:intergenic | 50.0% | |
| CTGCCTAACAGGAATGAAGC+TGG | - | chr3_1:54603502-54603521 | Msa0362860:CDS | 50.0% | |
| ACCTGACCATCATCTACGTC+CGG | - | chr3_1:54603657-54603676 | Msa0362860:CDS | 50.0% | |
| CCTGACCATCATCTACGTCC+GGG | - | chr3_1:54603658-54603677 | Msa0362860:CDS | 55.0% | |
| AGCTACCCGGACGTAGATGA+TGG | + | chr3_1:54603666-54603685 | None:intergenic | 55.0% | |
| CCTGACCATCATCTACGTCC+GGG | - | chr3_1:54603658-54603677 | Msa0362860:CDS | 55.0% | |
| AGCTACCCGGACGTAGATGA+TGG | + | chr3_1:54603666-54603685 | None:intergenic | 55.0% | |
| TTGGGCAAGAAGCGGGTCTC+TGG | - | chr3_1:54603457-54603476 | Msa0362860:CDS | 60.0% | |
| GCGGGTCTCTGGTGCTCAAA+AGG | - | chr3_1:54603468-54603487 | Msa0362860:CDS | 60.0% | |
| ! | CCCGGACGTAGATGATGGTC+AGG | + | chr3_1:54603661-54603680 | None:intergenic | 60.0% |
| TTGGGCAAGAAGCGGGTCTC+TGG | - | chr3_1:54603457-54603476 | Msa0362860:CDS | 60.0% | |
| GCGGGTCTCTGGTGCTCAAA+AGG | - | chr3_1:54603468-54603487 | Msa0362860:CDS | 60.0% | |
| ! | CCCGGACGTAGATGATGGTC+AGG | + | chr3_1:54603661-54603680 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 54602989 | 54603861 | 54602989 | ID=Msa0362860;Name=Msa0362860 |
| chr3_1 | mRNA | 54602989 | 54603861 | 54602989 | ID=Msa0362860-mRNA-1;Parent=Msa0362860;Name=Msa0362860-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|290 |
| chr3_1 | exon | 54602989 | 54603861 | 54602989 | ID=Msa0362860-mRNA-1:exon:9905;Parent=Msa0362860-mRNA-1 |
| chr3_1 | CDS | 54602989 | 54603861 | 54602989 | ID=Msa0362860-mRNA-1:cds;Parent=Msa0362860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
