AlfalfaGEDB | Msa0858360

M. sativa cultivar zhongmu-4 / Msa0858360

KEGG: K04730
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858360	RHN57117.1	89.623	106	11	0	46	151	5	110	6.39e-63	202

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858360	sp\|C0LGP4\|Y3475_ARATH	42.105	114	61	1	45	158	900	1008	2.20e-20	92.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858360	A0A396I2P3	89.623	106	11	0	46	151	5	110	3.05e-63	202

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021460	Msa0858360	0.803277	3.764241e-49	-8.615850e-47
Msa0023610	Msa0858360	0.820366	7.123637e-53	-8.615850e-47
Msa0033340	Msa0858360	0.806493	8.007206e-50	-8.615850e-47
Msa0068630	Msa0858360	0.802845	4.624426e-49	-8.615850e-47
Msa0071340	Msa0858360	0.825990	3.466784e-54	-8.615850e-47
Msa0109970	Msa0858360	0.804823	1.794913e-49	-8.615850e-47
Msa0109990	Msa0858360	0.816056	6.730541e-52	-8.615850e-47
Msa0137330	Msa0858360	0.826763	2.269864e-54	-8.615850e-47
Msa0142230	Msa0858360	0.823556	1.299723e-53	-8.615850e-47
Msa0153200	Msa0858360	0.833097	6.484084e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858360	MtrunA17_Chr5g0436931	89.623	106	11	0	46	151	5	110	5.88e-67	202
Msa0858360	MtrunA17_Chr5g0436861	88.785	107	12	0	46	152	902	1008	1.26e-62	210
Msa0858360	MtrunA17_Chr5g0437331	85.849	106	15	0	46	151	899	1004	6.86e-57	194
Msa0858360	MtrunA17_Chr7g0248261	78.505	107	23	0	46	152	853	959	2.08e-53	184
Msa0858360	MtrunA17_Chr5g0436911	74.766	107	27	0	46	152	184	290	1.21e-52	171
Msa0858360	MtrunA17_Chr5g0436851	74.528	106	27	0	47	152	50	155	1.71e-51	164
Msa0858360	MtrunA17_Chr1g0159871	75.701	107	26	0	46	152	829	935	2.42e-49	172
Msa0858360	MtrunA17_Chr5g0436871	71.963	107	30	0	46	152	104	210	1.25e-48	159
Msa0858360	MtrunA17_Chr5g0436841	76.415	106	20	1	46	151	948	1048	1.19e-47	168
Msa0858360	MtrunA17_Chr1g0159881	77.000	100	23	0	46	145	370	469	8.21e-47	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858360	AT3G47580.1	40.187	107	59	1	45	151	901	1002	1.61e-22	96.3
Msa0858360	AT3G47570.1	42.105	114	61	1	45	158	900	1008	2.24e-21	92.8
Msa0858360	AT3G47110.1	39.450	109	58	3	45	151	917	1019	1.13e-18	85.1
Msa0858360	AT3G47090.1	37.383	107	62	1	45	151	899	1000	3.50e-18	83.6
Msa0858360	AT5G20480.1	35.514	107	53	2	45	151	910	1000	3.76e-16	77.8
Msa0858360	AT5G20480.2	35.514	107	53	2	45	151	910	1000	3.76e-16	77.8
Msa0858360	AT5G39390.1	36.449	107	52	2	45	151	407	497	2.13e-15	75.1
Msa0858360	AT2G24130.1	31.481	108	74	0	47	154	856	963	9.60e-13	67.4
Msa0858360	AT2G24130.2	31.481	108	74	0	47	154	871	978	9.63e-13	67.4

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Find 46 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCACAAACCAAGTTGCTT+GGG	0.464654	5_4:-55723986	None:intergenic
AAGTATTTGGAGTCACCATG+TGG	0.691429	5_4:+55726774	Msa0858360:CDS
AATCGAACCCGGTATTCCCC+GGG	0.599401	5_4:+55723930	Msa0858360:CDS
ACTATATCAAGAATTCCTTC+TGG	0.459349	5_4:-55724231	None:intergenic
AGAAGGAATTCTTGATATAG+TGG	0.358148	5_4:+55724233	Msa0858360:CDS
AGCATAGAAACAACAAGTTT+TGG	0.277671	5_4:+55726807	Msa0858360:CDS
AGCCCAAGCAACTTGGTTTG+TGG	0.455575	5_4:+55723984	Msa0858360:CDS
AGGACGTACCCGGGGAATAC+CGG	0.450246	5_4:-55723938	None:intergenic
ATGCGTAGAGGCATGCACAC+TGG	0.569466	5_4:+55723886	Msa0858360:CDS
ATGCTTCCATAGTCTCCACA+TGG	0.694977	5_4:-55726789	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAAGATGAAAATTCCAGA+AGG	+	chr5_4:55724216-55724235	Msa0858360:CDS	30.0%
ACTATATCAAGAATTCCTTC+TGG	-	chr5_4:55724234-55724253	None:intergenic	30.0%
AGAAGGAATTCTTGATATAG+TGG	+	chr5_4:55724233-55724252	Msa0858360:CDS	30.0%
CAAAACTAAAAACACACGTA+AGG	-	chr5_4:55724508-55724527	None:intergenic	30.0%
AAATGCCGTTAATTATGCAA+GGG	+	chr5_4:55724599-55724618	Msa0858360:intron	30.0%
ACAATCCCTTGCATAATTAA+CGG	-	chr5_4:55724607-55724626	None:intergenic	30.0%
TAATTATGCAAGGGATTGTA+TGG	+	chr5_4:55724608-55724627	Msa0858360:intron	30.0%
GTTCATTTAAATGTTCCTTG+AGG	-	chr5_4:55724782-55724801	None:intergenic	30.0%
CTGTTAGCACAAAGAATATT+CGG	+	chr5_4:55725243-55725262	Msa0858360:intron	30.0%
ATCCTTTATTCCAGAAAATC+CGG	+	chr5_4:55725739-55725758	Msa0858360:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	55723886	55727915	55723886	ID=Msa0858360;Name=Msa0858360
chr5_4	mRNA	55723886	55727915	55723886	ID=Msa0858360-mRNA-1;Parent=Msa0858360;Name=Msa0858360-mRNA-1;_AED=0.85;_eAED=0.85;_QI=0\|0\|0\|0.25\|1\|1\|4\|0\|232
chr5_4	exon	55723886	55724023	55723886	ID=Msa0858360-mRNA-1:exon:17064;Parent=Msa0858360-mRNA-1
chr5_4	exon	55724117	55724433	55724117	ID=Msa0858360-mRNA-1:exon:17065;Parent=Msa0858360-mRNA-1
chr5_4	exon	55726700	55726901	55726700	ID=Msa0858360-mRNA-1:exon:17066;Parent=Msa0858360-mRNA-1
chr5_4	exon	55727874	55727915	55727874	ID=Msa0858360-mRNA-1:exon:17067;Parent=Msa0858360-mRNA-1
chr5_4	CDS	55723886	55724023	55723886	ID=Msa0858360-mRNA-1:cds;Parent=Msa0858360-mRNA-1
chr5_4	CDS	55724117	55724433	55724117	ID=Msa0858360-mRNA-1:cds;Parent=Msa0858360-mRNA-1
chr5_4	CDS	55726700	55726901	55726700	ID=Msa0858360-mRNA-1:cds;Parent=Msa0858360-mRNA-1
chr5_4	CDS	55727874	55727915	55727874	ID=Msa0858360-mRNA-1:cds;Parent=Msa0858360-mRNA-1

Gene Sequence

>Msa0858360

ATGCGTAGAGGCATGCACACTGGCCAAGCGTTGTTCCTCCTAGGAATCGAACCCGGTATTCCCCGGGTACGTCCTTGGAAGGAGCTCCTTGCCACTGGAGCCCAAGCAACTTGGTTTGTGGTTAATGAATTAGTCAAAGGAGATATCTATAGCTATGGAATTCTTCTGTTAGAGATGCTTACTGGAAAGAGACCAACAGATAACACTTTTTGTGAGAATCTAAGCTTACACAAATTTTGTAAGATGAAAATTCCAGAAGGAATTCTTGATATAGTGGATTCATGCTTGCTCATGTCATTTGCTGAAGATCAAACACGTGTTGTGGAAAACAACATAAAAGAGTGTCTAGTGATGTTTGCTAAAATAGGAGTTGCATGTTCCGAAGAATTTCCTACTCAGAGAATGCTCACAAAAGATGTTATAATGAAGTTGCTTGAAATTAAACAGAAATTACCGCAATGCAGCCTATGTACTCTTGTGCGGATTATATATTCTCAATTCTCTGACCTGCTGGATGCTCACCAAAAACAAGTATTTGGAGTCACCATGTGGAGACTATGGAAGCATAGAAACAACAAGTTTTGGAATGATGCAACTGAAACAGTTAAGACATTTGTGACCGAGTCGACTCCTTACTCACAAGTTGGCAGAAACAAGTTTGATGAAGATGTGTTGAAGATGATGAAGAAGAGGAAATGA

Protein sequence

>Msa0858360

MRRGMHTGQALFLLGIEPGIPRVRPWKELLATGAQATWFVVNELVKGDIYSYGILLLEMLTGKRPTDNTFCENLSLHKFCKMKIPEGILDIVDSCLLMSFAEDQTRVVENNIKECLVMFAKIGVACSEEFPTQRMLTKDVIMKLLEIKQKLPQCSLCTLVRIIYSQFSDLLDAHQKQVFGVTMWRLWKHRNNKFWNDATETVKTFVTESTPYSQVGRNKFDEDVLKMMKKRK*