Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363020 | XP_003600972.1 | 99.371 | 159 | 1 | 0 | 5 | 163 | 1 | 159 | 7.58e-114 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363020 | sp|Q8LBW3|LBD12_ARATH | 77.698 | 139 | 25 | 2 | 5 | 139 | 1 | 137 | 8.15e-72 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363020 | G7J2B8 | 99.371 | 159 | 1 | 0 | 5 | 163 | 1 | 159 | 3.62e-114 | 329 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0363020 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0363020 | Msa0509170 | 0.803595 | 3.234484e-49 | -8.615850e-47 |
| Msa0363020 | Msa0623980 | 0.801837 | 7.457476e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363020 | MtrunA17_Chr3g0114061 | 99.371 | 159 | 1 | 0 | 5 | 163 | 1 | 159 | 6.97e-118 | 329 |
| Msa0363020 | MtrunA17_Chr5g0437571 | 75.155 | 161 | 31 | 4 | 5 | 160 | 1 | 157 | 4.60e-81 | 237 |
| Msa0363020 | MtrunA17_Chr3g0106101 | 65.359 | 153 | 40 | 2 | 7 | 146 | 2 | 154 | 3.61e-69 | 207 |
| Msa0363020 | MtrunA17_Chr2g0311601 | 76.364 | 110 | 26 | 0 | 8 | 117 | 9 | 118 | 5.84e-59 | 181 |
| Msa0363020 | MtrunA17_Chr4g0043421 | 70.339 | 118 | 31 | 1 | 6 | 119 | 5 | 122 | 1.43e-56 | 175 |
| Msa0363020 | MtrunA17_Chr4g0030001 | 65.179 | 112 | 38 | 1 | 11 | 121 | 23 | 134 | 6.11e-50 | 159 |
| Msa0363020 | MtrunA17_Chr1g0200201 | 71.287 | 101 | 29 | 0 | 13 | 113 | 73 | 173 | 1.17e-48 | 157 |
| Msa0363020 | MtrunA17_Chr5g0438091 | 52.795 | 161 | 67 | 3 | 8 | 162 | 35 | 192 | 1.92e-48 | 155 |
| Msa0363020 | MtrunA17_Chr3g0129071 | 63.393 | 112 | 41 | 0 | 8 | 119 | 43 | 154 | 3.62e-47 | 153 |
| Msa0363020 | MtrunA17_Chr7g0227511 | 59.829 | 117 | 43 | 1 | 9 | 121 | 8 | 124 | 2.27e-46 | 149 |
| Msa0363020 | MtrunA17_Chr6g0449651 | 51.034 | 145 | 62 | 3 | 4 | 148 | 59 | 194 | 2.72e-46 | 149 |
| Msa0363020 | MtrunA17_Chr6g0449641 | 53.571 | 140 | 56 | 3 | 9 | 148 | 6 | 136 | 3.10e-46 | 147 |
| Msa0363020 | MtrunA17_Chr3g0117121 | 66.346 | 104 | 35 | 0 | 10 | 113 | 8 | 111 | 4.64e-46 | 149 |
| Msa0363020 | MtrunA17_Chr4g0058651 | 66.019 | 103 | 35 | 0 | 11 | 113 | 10 | 112 | 7.67e-46 | 148 |
| Msa0363020 | MtrunA17_Chr3g0115431 | 60.550 | 109 | 43 | 0 | 4 | 112 | 1 | 109 | 1.83e-45 | 148 |
| Msa0363020 | MtrunA17_Chr5g0432451 | 66.038 | 106 | 36 | 0 | 8 | 113 | 39 | 144 | 1.16e-42 | 141 |
| Msa0363020 | MtrunA17_Chr3g0113891 | 63.366 | 101 | 37 | 0 | 9 | 109 | 11 | 111 | 1.41e-42 | 140 |
| Msa0363020 | MtrunA17_Chr3g0097221 | 59.048 | 105 | 43 | 0 | 8 | 112 | 3 | 107 | 2.44e-42 | 142 |
| Msa0363020 | MtrunA17_Chr5g0402611 | 58.333 | 108 | 45 | 0 | 5 | 112 | 1 | 108 | 7.55e-42 | 142 |
| Msa0363020 | MtrunA17_Chr5g0437401 | 62.376 | 101 | 38 | 0 | 9 | 109 | 8 | 108 | 1.73e-41 | 137 |
| Msa0363020 | MtrunA17_Chr7g0260971 | 54.955 | 111 | 49 | 1 | 3 | 112 | 5 | 115 | 8.48e-38 | 129 |
| Msa0363020 | MtrunA17_Chr8g0353981 | 59.615 | 104 | 42 | 0 | 9 | 112 | 4 | 107 | 4.25e-37 | 127 |
| Msa0363020 | MtrunA17_Chr1g0184281 | 51.695 | 118 | 56 | 1 | 12 | 128 | 15 | 132 | 9.75e-37 | 125 |
| Msa0363020 | MtrunA17_Chr5g0444351 | 48.624 | 109 | 56 | 0 | 13 | 121 | 6 | 114 | 3.30e-36 | 122 |
| Msa0363020 | MtrunA17_Chr7g0245871 | 56.863 | 102 | 43 | 1 | 12 | 112 | 27 | 128 | 7.20e-36 | 124 |
| Msa0363020 | MtrunA17_Chr7g0225111 | 52.941 | 102 | 48 | 0 | 11 | 112 | 4 | 105 | 8.83e-36 | 120 |
| Msa0363020 | MtrunA17_Chr7g0261031 | 44.295 | 149 | 79 | 3 | 4 | 149 | 1 | 148 | 2.58e-35 | 122 |
| Msa0363020 | MtrunA17_Chr8g0351721 | 56.075 | 107 | 46 | 1 | 11 | 116 | 17 | 123 | 6.59e-35 | 121 |
| Msa0363020 | MtrunA17_Chr8g0351701 | 41.290 | 155 | 78 | 3 | 11 | 152 | 22 | 176 | 2.50e-34 | 120 |
| Msa0363020 | MtrunA17_Chr1g0184271 | 45.139 | 144 | 70 | 5 | 12 | 150 | 12 | 151 | 3.58e-34 | 120 |
| Msa0363020 | MtrunA17_Chr6g0460951 | 45.299 | 117 | 63 | 1 | 11 | 126 | 39 | 155 | 1.02e-33 | 118 |
| Msa0363020 | MtrunA17_Chr5g0435641 | 54.082 | 98 | 44 | 1 | 11 | 107 | 6 | 103 | 2.06e-33 | 116 |
| Msa0363020 | MtrunA17_Chr7g0245861 | 55.208 | 96 | 40 | 2 | 6 | 98 | 6 | 101 | 4.52e-30 | 106 |
| Msa0363020 | MtrunA17_Chr8g0374591 | 40.157 | 127 | 73 | 1 | 5 | 128 | 1 | 127 | 5.14e-30 | 106 |
| Msa0363020 | MtrunA17_Chr8g0374601 | 44.954 | 109 | 60 | 0 | 4 | 112 | 18 | 126 | 8.58e-30 | 109 |
| Msa0363020 | MtrunA17_Chr8g0374581 | 44.545 | 110 | 60 | 1 | 5 | 113 | 1 | 110 | 1.02e-27 | 103 |
| Msa0363020 | MtrunA17_Chr4g0059901 | 38.776 | 147 | 81 | 3 | 5 | 144 | 3 | 147 | 3.94e-27 | 102 |
| Msa0363020 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 12 | 98 | 7 | 94 | 8.69e-27 | 97.1 |
| Msa0363020 | MtrunA17_Chr6g0452691 | 38.095 | 147 | 83 | 4 | 2 | 147 | 1 | 140 | 1.02e-26 | 99.4 |
| Msa0363020 | MtrunA17_Chr6g0452671 | 39.423 | 104 | 63 | 0 | 2 | 105 | 1 | 104 | 1.07e-26 | 99.8 |
| Msa0363020 | MtrunA17_Chr2g0326051 | 61.538 | 65 | 25 | 0 | 57 | 121 | 5 | 69 | 8.48e-23 | 87.8 |
| Msa0363020 | MtrunA17_Chr2g0330201 | 38.462 | 104 | 64 | 0 | 9 | 112 | 16 | 119 | 1.38e-22 | 91.3 |
| Msa0363020 | MtrunA17_Chr4g0040831 | 42.697 | 89 | 51 | 0 | 13 | 101 | 16 | 104 | 1.72e-22 | 89.0 |
| Msa0363020 | MtrunA17_Chr8g0342351 | 37.500 | 104 | 65 | 0 | 9 | 112 | 9 | 112 | 2.93e-22 | 89.7 |
| Msa0363020 | MtrunA17_Chr6g0452661 | 43.750 | 80 | 44 | 1 | 13 | 91 | 10 | 89 | 3.86e-22 | 89.0 |
| Msa0363020 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 11 | 58 | 32 | 79 | 1.87e-19 | 78.2 |
| Msa0363020 | MtrunA17_Chr4g0046201 | 38.202 | 89 | 55 | 0 | 11 | 99 | 5 | 93 | 1.99e-19 | 82.4 |
| Msa0363020 | MtrunA17_Chr5g0439111 | 33.333 | 147 | 89 | 4 | 13 | 150 | 10 | 156 | 4.52e-19 | 80.9 |
| Msa0363020 | MtrunA17_Chr4g0055441 | 39.362 | 94 | 52 | 2 | 13 | 101 | 3 | 96 | 1.09e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363020 | AT2G30130.1 | 77.698 | 139 | 25 | 2 | 5 | 139 | 1 | 137 | 8.28e-73 | 217 |
| Msa0363020 | AT1G16530.1 | 67.544 | 114 | 36 | 1 | 7 | 119 | 9 | 122 | 2.96e-52 | 164 |
| Msa0363020 | AT1G07900.1 | 64.865 | 111 | 39 | 0 | 11 | 121 | 32 | 142 | 2.02e-50 | 160 |
| Msa0363020 | AT2G28500.1 | 65.138 | 109 | 38 | 0 | 11 | 119 | 54 | 162 | 6.49e-50 | 160 |
| Msa0363020 | AT1G31320.1 | 71.171 | 111 | 32 | 0 | 8 | 118 | 9 | 119 | 8.70e-50 | 158 |
| Msa0363020 | AT2G30340.1 | 64.151 | 106 | 38 | 0 | 8 | 113 | 48 | 153 | 2.62e-46 | 152 |
| Msa0363020 | AT2G30340.2 | 64.151 | 106 | 38 | 0 | 8 | 113 | 49 | 154 | 3.13e-46 | 152 |
| Msa0363020 | AT3G27650.1 | 62.385 | 109 | 41 | 0 | 5 | 113 | 32 | 140 | 4.43e-46 | 148 |
| Msa0363020 | AT5G63090.4 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 8.02e-46 | 148 |
| Msa0363020 | AT5G63090.3 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 8.02e-46 | 148 |
| Msa0363020 | AT5G63090.2 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 8.02e-46 | 148 |
| Msa0363020 | AT5G63090.1 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 8.02e-46 | 148 |
| Msa0363020 | AT2G40470.2 | 59.542 | 131 | 51 | 1 | 8 | 136 | 16 | 146 | 2.14e-45 | 147 |
| Msa0363020 | AT3G26660.1 | 62.264 | 106 | 40 | 0 | 13 | 118 | 6 | 111 | 4.12e-45 | 144 |
| Msa0363020 | AT2G40470.1 | 59.542 | 131 | 51 | 1 | 8 | 136 | 41 | 171 | 4.38e-45 | 147 |
| Msa0363020 | AT3G26620.1 | 62.264 | 106 | 40 | 0 | 13 | 118 | 6 | 111 | 5.29e-45 | 144 |
| Msa0363020 | AT2G23660.2 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 2.85e-42 | 143 |
| Msa0363020 | AT2G23660.3 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 2.85e-42 | 143 |
| Msa0363020 | AT2G23660.1 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 2.85e-42 | 143 |
| Msa0363020 | AT3G11090.1 | 56.000 | 125 | 53 | 1 | 9 | 131 | 8 | 132 | 3.50e-42 | 138 |
| Msa0363020 | AT5G66870.1 | 51.587 | 126 | 61 | 0 | 7 | 132 | 2 | 127 | 2.52e-41 | 140 |
| Msa0363020 | AT1G65620.1 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 6.25e-39 | 131 |
| Msa0363020 | AT1G65620.4 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 6.25e-39 | 131 |
| Msa0363020 | AT1G65620.3 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 6.25e-39 | 131 |
| Msa0363020 | AT1G65620.5 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 6.25e-39 | 131 |
| Msa0363020 | AT1G65620.2 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 6.25e-39 | 131 |
| Msa0363020 | AT4G00210.1 | 54.310 | 116 | 49 | 2 | 5 | 116 | 1 | 116 | 3.20e-37 | 127 |
| Msa0363020 | AT2G42430.1 | 55.856 | 111 | 48 | 1 | 3 | 112 | 6 | 116 | 8.85e-37 | 127 |
| Msa0363020 | AT3G03760.1 | 55.769 | 104 | 45 | 1 | 11 | 113 | 50 | 153 | 9.97e-37 | 127 |
| Msa0363020 | AT2G45410.1 | 57.282 | 103 | 43 | 1 | 15 | 116 | 19 | 121 | 2.92e-34 | 119 |
| Msa0363020 | AT2G42440.1 | 45.255 | 137 | 69 | 3 | 8 | 143 | 3 | 134 | 3.38e-34 | 120 |
| Msa0363020 | AT3G58190.1 | 54.639 | 97 | 43 | 1 | 12 | 107 | 11 | 107 | 4.90e-33 | 117 |
| Msa0363020 | AT2G31310.1 | 50.000 | 106 | 52 | 1 | 7 | 111 | 2 | 107 | 2.10e-32 | 114 |
| Msa0363020 | AT2G45420.1 | 51.923 | 104 | 49 | 1 | 15 | 117 | 40 | 143 | 2.39e-32 | 116 |
| Msa0363020 | AT4G00220.1 | 52.885 | 104 | 48 | 1 | 15 | 117 | 20 | 123 | 6.20e-32 | 114 |
| Msa0363020 | AT3G50510.1 | 43.902 | 123 | 67 | 1 | 10 | 130 | 10 | 132 | 3.28e-30 | 109 |
| Msa0363020 | AT3G50510.2 | 43.902 | 123 | 67 | 1 | 10 | 130 | 10 | 132 | 3.28e-30 | 109 |
| Msa0363020 | AT5G06080.1 | 51.376 | 109 | 47 | 2 | 11 | 118 | 6 | 109 | 8.82e-30 | 107 |
| Msa0363020 | AT5G35900.1 | 36.429 | 140 | 71 | 2 | 13 | 152 | 6 | 127 | 7.94e-26 | 98.2 |
| Msa0363020 | AT1G72980.1 | 37.008 | 127 | 79 | 1 | 2 | 127 | 3 | 129 | 4.29e-25 | 96.3 |
| Msa0363020 | AT3G47870.1 | 37.500 | 112 | 69 | 1 | 1 | 112 | 26 | 136 | 1.50e-24 | 97.4 |
| Msa0363020 | AT3G13850.1 | 35.537 | 121 | 74 | 1 | 13 | 129 | 37 | 157 | 2.99e-23 | 92.8 |
| Msa0363020 | AT1G06280.1 | 49.351 | 77 | 39 | 0 | 13 | 89 | 25 | 101 | 8.59e-21 | 85.1 |
| Msa0363020 | AT4G22700.1 | 35.821 | 134 | 72 | 4 | 13 | 145 | 6 | 126 | 5.42e-18 | 77.4 |
| Msa0363020 | AT2G19820.1 | 40.449 | 89 | 52 | 1 | 11 | 98 | 11 | 99 | 7.29e-17 | 72.8 |
| Msa0363020 | AT5G15060.1 | 40.000 | 80 | 44 | 2 | 7 | 83 | 12 | 90 | 4.96e-14 | 65.9 |
| Msa0363020 | AT1G36000.1 | 29.885 | 87 | 61 | 0 | 12 | 98 | 9 | 95 | 2.08e-12 | 60.8 |
| Msa0363020 | AT3G27940.3 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.61e-11 | 58.2 |
| Msa0363020 | AT3G27940.1 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.61e-11 | 58.2 |
| Msa0363020 | AT3G27940.2 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.61e-11 | 58.2 |
Find 21 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGCACAACGGCGTCTA+AGG | 0.285930 | 3_1:-55096442 | None:intergenic |
| GCATCAGCTCTTTGTTGAAT+AGG | 0.314081 | 3_1:-55097094 | None:intergenic |
| AGAGTTAAGGACCCTGTTTA+TGG | 0.329312 | 3_1:+55097148 | Msa0363020:CDS |
| GGATCATGTGAAGGGAAATA+AGG | 0.350330 | 3_1:-55096479 | None:intergenic |
| GTTGATCATCATGTTTCATC+TGG | 0.388561 | 3_1:-55097258 | None:intergenic |
| GCTCCAACACAACCATAAAC+AGG | 0.400328 | 3_1:-55097160 | None:intergenic |
| GCATTTGAAGCTCAGAAACT+TGG | 0.418459 | 3_1:-55097201 | None:intergenic |
| TGAAGCAAATGCAAGAGTTA+AGG | 0.446961 | 3_1:+55097135 | Msa0363020:CDS |
| TGAATTACATTGCTTGAAGA+AGG | 0.450118 | 3_1:-55097349 | None:intergenic |
| GACCCTGTTTATGGTTGTGT+TGG | 0.463653 | 3_1:+55097157 | Msa0363020:CDS |
| GATCATAAGATTTATGATCA+AGG | 0.495019 | 3_1:-55097306 | None:intergenic |
| CCTTAGACGCCGTTGTGCTA+AGG | 0.517412 | 3_1:+55096442 | Msa0363020:CDS |
| GAAGGAAAGTTGAAATACTG+AGG | 0.552181 | 3_1:-55097331 | None:intergenic |
| ATCATAAGATTTATGATCAA+GGG | 0.554510 | 3_1:-55097305 | None:intergenic |
| CAATGTTAGCAAAATGCTCC+AGG | 0.562470 | 3_1:+55096541 | Msa0363020:CDS |
| AAAATTTGCAATTGTTCACA+AGG | 0.564865 | 3_1:+55096505 | Msa0363020:CDS |
| AGGAGTTTGCATGAAGCACA+AGG | 0.592427 | 3_1:-55096422 | None:intergenic |
| GAGTTTGCATGAAGCACAAG+GGG | 0.629954 | 3_1:-55096420 | None:intergenic |
| CTCCAACACAACCATAAACA+GGG | 0.642977 | 3_1:-55097159 | None:intergenic |
| GGAGTTTGCATGAAGCACAA+GGG | 0.671143 | 3_1:-55096421 | None:intergenic |
| AGATACAATCCTTAGCACAA+CGG | 0.718268 | 3_1:-55096451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTTTTTTTTTAAAGAA+AGG | + | chr3_1:55097032-55097051 | Msa0363020:intron | 10.0% |
| !!! | TAACTTTTTTTTTTAAAGAA+AGG | + | chr3_1:55097032-55097051 | Msa0363020:intron | 10.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_1:55096920-55096939 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_1:55097038-55097057 | Msa0363020:intron | 15.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_1:55096920-55096939 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_1:55097038-55097057 | Msa0363020:intron | 15.0% |
| !!! | TGAACAATTGCAAATTTTTT+AGG | - | chr3_1:55096503-55096522 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_1:55096592-55096611 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_1:55096716-55096735 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_1:55096852-55096871 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3_1:55096858-55096877 | Msa0363020:intron | 20.0% |
| !!! | AAAAGTGCAATTTTCTTATT+GGG | + | chr3_1:55096976-55096995 | Msa0363020:intron | 20.0% |
| !! | ATCATAAGATTTATGATCAA+GGG | - | chr3_1:55097308-55097327 | None:intergenic | 20.0% |
| !!! | TGAACAATTGCAAATTTTTT+AGG | - | chr3_1:55096503-55096522 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_1:55096592-55096611 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_1:55096716-55096735 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_1:55096852-55096871 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3_1:55096858-55096877 | Msa0363020:intron | 20.0% |
| !!! | AAAAGTGCAATTTTCTTATT+GGG | + | chr3_1:55096976-55096995 | Msa0363020:intron | 20.0% |
| !! | ATCATAAGATTTATGATCAA+GGG | - | chr3_1:55097308-55097327 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_1:55096490-55096509 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_1:55096491-55096510 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATTGTTCACA+AGG | + | chr3_1:55096505-55096524 | Msa0363020:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_1:55096664-55096683 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_1:55096889-55096908 | None:intergenic | 25.0% |
| !!! | CAAAAGTGCAATTTTCTTAT+TGG | + | chr3_1:55096975-55096994 | Msa0363020:intron | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_1:55097283-55097302 | None:intergenic | 25.0% |
| ! | GATCATAAGATTTATGATCA+AGG | - | chr3_1:55097309-55097328 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_1:55096490-55096509 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_1:55096491-55096510 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATTGTTCACA+AGG | + | chr3_1:55096505-55096524 | Msa0363020:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_1:55096664-55096683 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_1:55096889-55096908 | None:intergenic | 25.0% |
| !!! | CAAAAGTGCAATTTTCTTAT+TGG | + | chr3_1:55096975-55096994 | Msa0363020:intron | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_1:55097283-55097302 | None:intergenic | 25.0% |
| ! | GATCATAAGATTTATGATCA+AGG | - | chr3_1:55097309-55097328 | None:intergenic | 25.0% |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_1:55096620-55096639 | Msa0363020:intron | 30.0% |
| !!! | TATTGGGTTTTGAGTTTTGA+CGG | + | chr3_1:55096992-55097011 | Msa0363020:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_1:55096999-55097018 | Msa0363020:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_1:55097066-55097085 | Msa0363020:intron | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_1:55097352-55097371 | None:intergenic | 30.0% | |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_1:55096620-55096639 | Msa0363020:intron | 30.0% |
| !!! | TATTGGGTTTTGAGTTTTGA+CGG | + | chr3_1:55096992-55097011 | Msa0363020:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_1:55096999-55097018 | Msa0363020:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_1:55097066-55097085 | Msa0363020:intron | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_1:55097352-55097371 | None:intergenic | 30.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_1:55096454-55096473 | None:intergenic | 35.0% | |
| ! | GCAATTGTTCACAAGGTTTT+TGG | + | chr3_1:55096512-55096531 | Msa0363020:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_1:55096746-55096765 | Msa0363020:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_1:55096773-55096792 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_1:55096773-55096792 | Msa0363020:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_1:55096778-55096797 | None:intergenic | 35.0% | |
| ATTTGTTTCAAAAAGTGGCG+TGG | - | chr3_1:55096884-55096903 | None:intergenic | 35.0% | |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3_1:55096938-55096957 | Msa0363020:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_1:55096998-55097017 | Msa0363020:intron | 35.0% |
| TGAAGCAAATGCAAGAGTTA+AGG | + | chr3_1:55097135-55097154 | Msa0363020:CDS | 35.0% | |
| GTTGATCATCATGTTTCATC+TGG | - | chr3_1:55097261-55097280 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_1:55097334-55097353 | None:intergenic | 35.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_1:55096454-55096473 | None:intergenic | 35.0% | |
| ! | GCAATTGTTCACAAGGTTTT+TGG | + | chr3_1:55096512-55096531 | Msa0363020:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_1:55096746-55096765 | Msa0363020:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_1:55096773-55096792 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_1:55096773-55096792 | Msa0363020:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_1:55096778-55096797 | None:intergenic | 35.0% | |
| ATTTGTTTCAAAAAGTGGCG+TGG | - | chr3_1:55096884-55096903 | None:intergenic | 35.0% | |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3_1:55096938-55096957 | Msa0363020:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_1:55096998-55097017 | Msa0363020:intron | 35.0% |
| TGAAGCAAATGCAAGAGTTA+AGG | + | chr3_1:55097135-55097154 | Msa0363020:CDS | 35.0% | |
| GTTGATCATCATGTTTCATC+TGG | - | chr3_1:55097261-55097280 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_1:55097334-55097353 | None:intergenic | 35.0% | |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_1:55096482-55096501 | None:intergenic | 40.0% | |
| ! | GAGCATTTTGCTAACATTGC+TGG | - | chr3_1:55096540-55096559 | None:intergenic | 40.0% |
| CAATGTTAGCAAAATGCTCC+AGG | + | chr3_1:55096541-55096560 | Msa0363020:CDS | 40.0% | |
| ! | TCAAGGAAGCATAGAAAGTG+TGG | - | chr3_1:55096575-55096594 | None:intergenic | 40.0% |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_1:55096779-55096798 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_1:55096776-55096795 | Msa0363020:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_1:55096781-55096800 | Msa0363020:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_1:55097008-55097027 | Msa0363020:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_1:55097097-55097116 | None:intergenic | 40.0% | |
| AGAGTTAAGGACCCTGTTTA+TGG | + | chr3_1:55097148-55097167 | Msa0363020:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_1:55097162-55097181 | None:intergenic | 40.0% | |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_1:55097204-55097223 | None:intergenic | 40.0% |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_1:55096482-55096501 | None:intergenic | 40.0% | |
| ! | GAGCATTTTGCTAACATTGC+TGG | - | chr3_1:55096540-55096559 | None:intergenic | 40.0% |
| CAATGTTAGCAAAATGCTCC+AGG | + | chr3_1:55096541-55096560 | Msa0363020:CDS | 40.0% | |
| ! | TCAAGGAAGCATAGAAAGTG+TGG | - | chr3_1:55096575-55096594 | None:intergenic | 40.0% |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_1:55096779-55096798 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_1:55096776-55096795 | Msa0363020:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_1:55096781-55096800 | Msa0363020:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_1:55097008-55097027 | Msa0363020:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_1:55097097-55097116 | None:intergenic | 40.0% | |
| AGAGTTAAGGACCCTGTTTA+TGG | + | chr3_1:55097148-55097167 | Msa0363020:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_1:55097162-55097181 | None:intergenic | 40.0% | |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_1:55097204-55097223 | None:intergenic | 40.0% |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_1:55096423-55096442 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_1:55096424-55096443 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_1:55096425-55096444 | None:intergenic | 45.0% | |
| ! | GAAAGTGTGGATGAAGTACC+TGG | - | chr3_1:55096562-55096581 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_1:55097157-55097176 | Msa0363020:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_1:55097163-55097182 | None:intergenic | 45.0% | |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_1:55096423-55096442 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_1:55096424-55096443 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_1:55096425-55096444 | None:intergenic | 45.0% | |
| ! | GAAAGTGTGGATGAAGTACC+TGG | - | chr3_1:55096562-55096581 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_1:55097157-55097176 | Msa0363020:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_1:55097163-55097182 | None:intergenic | 45.0% | |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_1:55096445-55096464 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_1:55096442-55096461 | Msa0363020:CDS | 55.0% | |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_1:55096445-55096464 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_1:55096442-55096461 | Msa0363020:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 55096389 | 55097405 | 55096389 | ID=Msa0363020;Name=Msa0363020 |
| chr3_1 | mRNA | 55096389 | 55097405 | 55096389 | ID=Msa0363020-mRNA-1;Parent=Msa0363020;Name=Msa0363020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|163 |
| chr3_1 | exon | 55096389 | 55096562 | 55096389 | ID=Msa0363020-mRNA-1:exon:9984;Parent=Msa0363020-mRNA-1 |
| chr3_1 | exon | 55097088 | 55097405 | 55097088 | ID=Msa0363020-mRNA-1:exon:9985;Parent=Msa0363020-mRNA-1 |
| chr3_1 | CDS | 55096389 | 55096562 | 55096389 | ID=Msa0363020-mRNA-1:cds;Parent=Msa0363020-mRNA-1 |
| chr3_1 | CDS | 55097088 | 55097405 | 55097088 | ID=Msa0363020-mRNA-1:cds;Parent=Msa0363020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
