AlfalfaGEDB | Msa0363760

M. sativa cultivar zhongmu-4 / Msa0363760

KEGG: -
GO: GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047
PFAM: PF03552.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363760	AES70600.1	90.018	541	51	1	1	541	196	733	0.0	999

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363760	sp\|Q8VZK9\|CSLE1_ARATH	53.604	541	232	4	1	540	207	729	0.0	591

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363760	G7IV12	90.018	541	51	1	1	541	196	733	0.0	999

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0363760	Msa0411290	0.820818	5.610665e-53	-8.615850e-47
Msa0363760	Msa0455580	0.901949	1.595411e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363760	MtrunA17_Chr3g0102531	90.018	541	51	1	1	541	195	732	0.0	998
Msa0363760	MtrunA17_Chr3g0102541	86.296	540	74	0	1	540	196	735	0.0	961
Msa0363760	MtrunA17_Chr3g0102551	65.065	541	181	3	1	539	204	738	0.0	743
Msa0363760	MtrunA17_Chr1g0186381	33.396	533	335	6	20	540	213	737	2.57e-99	316
Msa0363760	MtrunA17_Chr4g0046401	34.888	536	325	10	2	524	197	721	3.54e-99	316
Msa0363760	MtrunA17_Chr3g0077511	34.549	466	283	5	66	515	233	692	2.74e-91	294
Msa0363760	MtrunA17_Chr3g0095791	32.653	490	301	6	40	515	215	689	1.50e-90	292
Msa0363760	MtrunA17_Chr2g0298581	34.607	471	282	6	63	516	230	691	6.45e-90	290
Msa0363760	MtrunA17_Chr2g0307191	34.115	469	285	7	63	515	230	690	5.70e-89	288
Msa0363760	MtrunA17_Chr2g0322361	32.206	562	327	14	1	531	200	738	2.84e-81	269

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363760	AT1G55850.1	53.604	541	232	4	1	540	207	729	0.0	591
Msa0363760	AT4G23990.2	38.376	542	314	8	1	535	2	530	1.49e-123	373
Msa0363760	AT4G23990.1	38.490	543	312	9	1	535	216	744	7.70e-121	373
Msa0363760	AT4G24000.2	36.313	537	317	8	1	531	2	519	2.02e-119	362
Msa0363760	AT4G24000.1	36.313	537	317	8	1	531	194	711	4.65e-117	362
Msa0363760	AT4G24010.1	35.963	545	324	7	1	535	197	726	1.78e-112	352
Msa0363760	AT5G17420.1	28.693	589	347	13	2	530	422	997	4.49e-78	265
Msa0363760	AT2G25540.1	30.248	605	334	14	2	530	439	1031	7.16e-78	265
Msa0363760	AT2G32530.1	31.070	589	324	20	2	541	197	752	1.33e-75	254
Msa0363760	AT2G32540.1	31.892	555	295	17	36	536	226	751	4.55e-75	253

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Find 128 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGACAATTAAAAG+AGG	0.561254	3_1:+56402007	None:intergenic
AAAATAAAATATTTAGTACA+AGG	0.569920	3_1:+56405499	None:intergenic
AAACAATTCTCAATCTCTAA+GGG	0.548566	3_1:-56404411	Msa0363760:CDS
AAACACATCATGGGGAAAAG+AGG	0.543820	3_1:-56403895	Msa0363760:intron
AAAGAAGGACAATTAAAAGA+GGG	0.611601	3_1:+56402008	None:intergenic
AAAGAGTACCAATGAATTCA+TGG	0.349547	3_1:+56404985	None:intergenic
AACAAACCCATCTTCATCTC+TGG	0.467241	3_1:+56405075	None:intergenic
AACCACAATTGTTGTATACA+GGG	0.608263	3_1:+56405653	None:intergenic
AAGATAAGGGAAGATTGCCA+AGG	0.672929	3_1:-56402258	Msa0363760:CDS
AAGATATGAGAAGGAAATTA+TGG	0.297367	3_1:-56402485	Msa0363760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCACAATTGTTGTATACA+GGG	+	chr3_1:56402107-56402126	None:intergenic	30.0%
ATAGAGAATGTACCAAGATA+TGG	-	chr3_1:56402388-56402407	Msa0363760:CDS	30.0%
ATAGATACTGCTTCATAGAA+AGG	-	chr3_1:56402653-56402672	Msa0363760:CDS	30.0%
TTTCAACATAACTTCAAAGC+TGG	-	chr3_1:56402747-56402766	Msa0363760:intron	30.0%
TGTCATCAATGATTAGCAAT+GGG	-	chr3_1:56403288-56403307	Msa0363760:intron	30.0%
CAAACAATTCTCAATCTCTA+AGG	-	chr3_1:56403345-56403364	Msa0363760:intron	30.0%
TTCTTCATGGATGAAGAAAA+GGG	-	chr3_1:56403380-56403399	Msa0363760:intron	30.0%
GTTCAAAGTTTAGAAACAGT+TGG	+	chr3_1:56403614-56403633	None:intergenic	30.0%
GTGATCTATACAAGATTGAT+TGG	-	chr3_1:56403738-56403757	Msa0363760:intron	30.0%
CGTACTTATTTAAACCTTTG+TGG	-	chr3_1:56404132-56404151	Msa0363760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	56402014	56405765	56402014	ID=Msa0363760;Name=Msa0363760
chr3_1	mRNA	56402014	56405765	56402014	ID=Msa0363760-mRNA-1;Parent=Msa0363760;Name=Msa0363760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=354\|1\|1\|1\|0.83\|0.71\|7\|178\|541
chr3_1	exon	56402014	56402749	56402014	ID=Msa0363760-mRNA-1:exon:10430;Parent=Msa0363760-mRNA-1
chr3_1	exon	56402843	56403190	56402843	ID=Msa0363760-mRNA-1:exon:10429;Parent=Msa0363760-mRNA-1
chr3_1	exon	56403896	56404135	56403896	ID=Msa0363760-mRNA-1:exon:10428;Parent=Msa0363760-mRNA-1
chr3_1	exon	56404286	56404498	56404286	ID=Msa0363760-mRNA-1:exon:10427;Parent=Msa0363760-mRNA-1
chr3_1	exon	56404994	56405122	56404994	ID=Msa0363760-mRNA-1:exon:10426;Parent=Msa0363760-mRNA-1
chr3_1	exon	56405247	56405432	56405247	ID=Msa0363760-mRNA-1:exon:10425;Parent=Msa0363760-mRNA-1
chr3_1	exon	56405460	56405765	56405460	ID=Msa0363760-mRNA-1:exon:10424;Parent=Msa0363760-mRNA-1
chr3_1	five_prime_UTR	56405460	56405765	56405460	ID=Msa0363760-mRNA-1:five_prime_utr;Parent=Msa0363760-mRNA-1
chr3_1	five_prime_UTR	56405385	56405432	56405385	ID=Msa0363760-mRNA-1:five_prime_utr;Parent=Msa0363760-mRNA-1
chr3_1	CDS	56405247	56405384	56405247	ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1	CDS	56404994	56405122	56404994	ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1	CDS	56404286	56404498	56404286	ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1	CDS	56403896	56404135	56403896	ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1	CDS	56402843	56403190	56402843	ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1	CDS	56402192	56402749	56402192	ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1	three_prime_UTR	56402014	56402191	56402014	ID=Msa0363760-mRNA-1:three_prime_utr;Parent=Msa0363760-mRNA-1

Gene Sequence

>Msa0363760

ATGTACCAAGATATGGAAAGTCGAGTAGAAAATGCATCCAAGTTGGGTAAAGTACCGAAGGAGGCATACTCAAATCACAAGGAATTTTCTCAATGGGGTTCATATTCATCAAGACGTGACCATGACACAATTCTTCAAATACTGCTTCATAGAAAGGACAATGCCAGAGATGAAGATGGGTTTGTTATGCCCACCTTGGTATATTTGGCTCGTGAGAAAAGACCCCAATTTCAACATAACTTCAAAGCTGGAGCCATGAATTCATTGATAAGGGTGTCATCAATGATTAGCAATGGGAAAATAATTCTCAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTTTGCTTCTTCATGGATGAAGAAAAGGGACATGAAATTGCCTTTGTGCAGGCTCCTCAGGGCATTGCCAATATCACAAAAAATGACATATATGGTGGTTATTTTCGTATACCTCATGAGGTGGATTTACATGGCTTTGATGGATTAGGTGGGCCCATGTATATTGGAACCGGTTGCTTTCACAGTAGAGATGCACTATGTGGAAGAAAGTATAGTGATCTATACAAGATTGATTGGAAGAATGTAAATGATGAAAATATTGATCATATGATAAAAGAAGAAAGTTTGCAAGAGCTAGAAGAGAAATCAAAGACTCTTGCAAGTTGTACCTATGAGGAAAACACATCATGGGGAAAAGAGATGGGACTACTATATGGTTGTGTAGTGGAGGATATAATAACAGGATTATCTATTTTATGCAAAGGATGGACATCAATATATTATAATCCAACAAGAAAAGCTTTCTTAGGTTTGACTCCAACAACCTTGCCAGAATCACTTGTTCAACATAAGAGATGGTCTGAAGGACAATTTCAAGTTGCACTTTCAAAGTTCAGTCCTATTTGGTACTCTTTTGGATTGATCAGTCCGGGCCTTCAAATGTCTTATTGTTACTATAATCTATGGGTGTTAAACTCCTTTCCAACTATGTATTATTGCATCATCCCTTCACTATATCTCCTCAAAGGCATTTCCTTGTTCCCACGGATTTCAAGTCCATGGTTCATACCTTTTGCATATGTCATAGTTGGTGATTCAACATACTGTTTGTTAGAGTTTTTGAGGGTAGGAGGTACAATGAAAGGTTGGTGGAATGAGTTAAGGATGTGGGTTTACAAGAGAACAAGTTCTTACCTTTTTGCTTTTGTTGATGCCATGTTGAAGTTTTTTGGATTTTCAAATTCAGCTTTCATAATATCTGCTAAGGTAGCTGAAGAAAATATTTCACAAAGATATGAGAAGGAAATTATGGAGTTTCGAAACTCATCTCCAATGCTCACTTTATTGGCTACACTTGCAATGCTGAATCTGTTTTGTCTTGTTGGAATGTTGTCAAGGAAGGTTGTGTTAAGTGGAGCAAGTGTTAGAATATTTGAGGCTATGTTATTGCAAGTTTTACTATGTGGGATTTTGGTTGTTCTTAATATACCTATCTATCAAGGCCTTTTCCTAAGGAAAGATAAGGGAAGATTGCCAAGGTCTGTTGCAGTTAAATCAACAACATTAGCTCTAAGTGTATGTGTCCTATTTACTTACCTTAGTTAA

Protein sequence

>Msa0363760

MYQDMESRVENASKLGKVPKEAYSNHKEFSQWGSYSSRRDHDTILQILLHRKDNARDEDGFVMPTLVYLAREKRPQFQHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSLRDALCFFMDEEKGHEIAFVQAPQGIANITKNDIYGGYFRIPHEVDLHGFDGLGGPMYIGTGCFHSRDALCGRKYSDLYKIDWKNVNDENIDHMIKEESLQELEEKSKTLASCTYEENTSWGKEMGLLYGCVVEDIITGLSILCKGWTSIYYNPTRKAFLGLTPTTLPESLVQHKRWSEGQFQVALSKFSPIWYSFGLISPGLQMSYCYYNLWVLNSFPTMYYCIIPSLYLLKGISLFPRISSPWFIPFAYVIVGDSTYCLLEFLRVGGTMKGWWNELRMWVYKRTSSYLFAFVDAMLKFFGFSNSAFIISAKVAEENISQRYEKEIMEFRNSSPMLTLLATLAMLNLFCLVGMLSRKVVLSGASVRIFEAMLLQVLLCGILVVLNIPIYQGLFLRKDKGRLPRSVAVKSTTLALSVCVLFTYLS*