AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363760 MtrunA17_Chr3g0102531 90.018 541 51 1 1 541 195 732 0.0 998
Msa0363760 MtrunA17_Chr3g0102541 86.296 540 74 0 1 540 196 735 0.0 961
Msa0363760 MtrunA17_Chr3g0102551 65.065 541 181 3 1 539 204 738 0.0 743
Msa0363760 MtrunA17_Chr1g0186381 33.396 533 335 6 20 540 213 737 2.57e-99 316
Msa0363760 MtrunA17_Chr4g0046401 34.888 536 325 10 2 524 197 721 3.54e-99 316
Msa0363760 MtrunA17_Chr3g0077511 34.549 466 283 5 66 515 233 692 2.74e-91 294
Msa0363760 MtrunA17_Chr3g0095791 32.653 490 301 6 40 515 215 689 1.50e-90 292
Msa0363760 MtrunA17_Chr2g0298581 34.607 471 282 6 63 516 230 691 6.45e-90 290
Msa0363760 MtrunA17_Chr2g0307191 34.115 469 285 7 63 515 230 690 5.70e-89 288
Msa0363760 MtrunA17_Chr2g0322361 32.206 562 327 14 1 531 200 738 2.84e-81 269
Msa0363760 MtrunA17_Chr8g0364641 29.983 577 343 12 2 530 389 952 9.17e-80 269
Msa0363760 MtrunA17_Chr8g0379241 30.471 594 335 13 2 530 380 960 7.72e-79 266
Msa0363760 MtrunA17_Chr2g0284211 32.400 500 267 7 2 433 365 861 1.19e-78 266
Msa0363760 MtrunA17_Chr1g0183381 30.308 584 339 13 2 531 307 876 5.18e-76 258
Msa0363760 MtrunA17_Chr2g0322371 31.362 558 334 15 1 531 193 728 1.67e-75 253
Msa0363760 MtrunA17_Chr4g0025201 31.504 565 333 14 5 535 192 736 9.26e-73 246
Msa0363760 MtrunA17_Chr2g0322351 30.783 562 335 14 2 539 198 729 2.91e-70 239
Msa0363760 MtrunA17_Chr1g0201731 30.784 510 272 11 2 433 475 981 2.43e-69 241
Msa0363760 MtrunA17_Chr4g0073711 27.165 589 355 14 2 530 435 1009 2.07e-63 224
Msa0363760 MtrunA17_Chr7g0269741 26.635 627 341 21 17 541 546 1155 6.24e-50 185
Msa0363760 MtrunA17_Chr3g0088821 43.085 188 103 4 2 188 455 639 5.51e-43 164
Msa0363760 MtrunA17_Chr3g0088821 29.245 318 209 7 217 530 744 1049 2.39e-34 138
Msa0363760 MtrunA17_Chr8g0352231 42.105 190 106 4 2 190 455 641 7.56e-43 164
Msa0363760 MtrunA17_Chr8g0352231 29.642 307 200 7 228 530 755 1049 3.08e-34 138
Msa0363760 MtrunA17_Chr2g0297351 26.058 591 348 22 18 537 433 1005 1.38e-42 163
Msa0363760 MtrunA17_Chr8g0383701 42.021 188 105 4 2 188 473 657 5.93e-41 158
Msa0363760 MtrunA17_Chr8g0383701 31.138 334 207 9 215 541 761 1078 2.32e-37 147
Msa0363760 MtrunA17_Chr7g0267731 42.553 188 104 3 2 188 367 551 1.11e-40 157
Msa0363760 MtrunA17_Chr7g0267731 26.997 363 241 6 186 541 623 968 3.81e-35 140
Msa0363760 MtrunA17_Chr3g0137951 42.021 188 105 4 2 188 465 649 4.92e-40 155
Msa0363760 MtrunA17_Chr3g0137951 31.818 308 192 8 228 530 763 1057 1.72e-36 145
Msa0363760 MtrunA17_Chr2g0296991 38.298 188 112 4 2 188 406 590 8.40e-37 145
Msa0363760 MtrunA17_Chr2g0296991 30.503 318 204 7 217 530 711 1015 1.17e-36 145
Msa0363760 MtrunA17_Chr3g0078671 39.894 188 109 3 2 188 422 606 1.87e-36 145
Msa0363760 MtrunA17_Chr3g0078671 31.132 318 206 6 228 541 723 1031 4.16e-36 144
Msa0363760 MtrunA17_Chr5g0410641 41.212 165 83 3 37 188 528 691 5.04e-35 140
Msa0363760 MtrunA17_Chr5g0410641 26.498 317 223 6 225 540 798 1105 7.48e-27 115
Msa0363760 MtrunA17_Chr2g0322331 31.515 330 204 9 218 540 60 374 3.66e-34 133
Msa0363760 MtrunA17_Chr4g0039801 42.424 165 81 3 37 188 549 712 2.29e-33 135
Msa0363760 MtrunA17_Chr4g0039801 26.480 321 220 8 225 541 819 1127 2.74e-27 117
Msa0363760 MtrunA17_Chr1g0165411 35.321 218 115 6 32 234 512 718 4.20e-33 134
Msa0363760 MtrunA17_Chr1g0165411 25.776 322 227 6 222 541 777 1088 1.23e-24 108
Msa0363760 MtrunA17_Chr1g0165421 40.217 184 91 5 32 200 526 705 1.13e-31 130
Msa0363760 MtrunA17_Chr1g0165421 25.705 319 225 6 225 541 808 1116 3.24e-25 110
Msa0363760 MtrunA17_Chr2g0322341 38.961 154 80 4 2 153 201 342 1.91e-29 119
Msa0363760 MtrunA17_Chr7g0274751 42.177 147 80 3 46 188 355 500 3.66e-28 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363760 AT1G55850.1 53.604 541 232 4 1 540 207 729 0.0 591
Msa0363760 AT4G23990.2 38.376 542 314 8 1 535 2 530 1.49e-123 373
Msa0363760 AT4G23990.1 38.490 543 312 9 1 535 216 744 7.70e-121 373
Msa0363760 AT4G24000.2 36.313 537 317 8 1 531 2 519 2.02e-119 362
Msa0363760 AT4G24000.1 36.313 537 317 8 1 531 194 711 4.65e-117 362
Msa0363760 AT4G24010.1 35.963 545 324 7 1 535 197 726 1.78e-112 352
Msa0363760 AT5G17420.1 28.693 589 347 13 2 530 422 997 4.49e-78 265
Msa0363760 AT2G25540.1 30.248 605 334 14 2 530 439 1031 7.16e-78 265
Msa0363760 AT2G32530.1 31.070 589 324 20 2 541 197 752 1.33e-75 254
Msa0363760 AT2G32540.1 31.892 555 295 17 36 536 226 751 4.55e-75 253
Msa0363760 AT4G15290.1 32.740 562 307 16 21 540 221 753 1.00e-74 252
Msa0363760 AT4G15320.3 32.327 563 312 13 21 541 221 756 1.30e-74 251
Msa0363760 AT4G15320.5 32.188 553 310 12 21 531 221 750 1.47e-74 251
Msa0363760 AT4G15320.4 32.327 563 312 13 21 541 236 771 1.54e-74 251
Msa0363760 AT4G18780.1 29.851 603 333 13 2 530 368 954 6.78e-72 248
Msa0363760 AT2G32620.4 30.782 588 323 20 2 536 101 657 8.38e-68 231
Msa0363760 AT2G32620.1 30.782 588 323 20 2 536 197 753 5.70e-67 231
Msa0363760 AT2G32610.1 29.716 599 322 20 2 541 198 756 2.97e-66 229
Msa0363760 AT4G15320.2 30.061 489 234 10 21 436 221 674 2.55e-57 205
Msa0363760 AT2G32620.3 31.702 429 226 14 2 390 197 598 4.99e-56 198
Msa0363760 AT4G38190.1 26.421 598 355 16 17 541 506 1091 9.96e-56 202
Msa0363760 AT4G15320.1 30.201 447 216 8 63 436 294 717 1.25e-53 195
Msa0363760 AT2G32620.2 33.141 347 175 10 2 312 197 522 5.58e-49 178
Msa0363760 AT5G05170.1 43.085 188 103 4 2 188 443 627 6.87e-43 164
Msa0363760 AT5G05170.1 28.302 318 212 7 217 530 731 1036 5.12e-32 132
Msa0363760 AT5G64740.1 45.930 172 90 3 17 188 476 644 2.75e-41 160
Msa0363760 AT5G64740.1 28.869 336 222 7 210 541 744 1066 2.64e-33 135
Msa0363760 AT4G39350.1 44.186 172 93 3 17 188 477 645 3.63e-41 159
Msa0363760 AT4G39350.1 36.715 207 130 1 228 433 761 967 9.18e-36 143
Msa0363760 AT5G09870.1 45.930 172 90 3 17 188 464 632 4.97e-41 159
Msa0363760 AT5G09870.1 29.167 336 221 7 210 541 729 1051 2.79e-33 135
Msa0363760 AT2G33100.2 25.719 591 342 16 37 541 444 1023 4.14e-40 156
Msa0363760 AT2G33100.1 25.719 591 342 16 37 541 444 1023 4.14e-40 156
Msa0363760 AT2G21770.1 44.186 172 93 3 17 188 482 650 5.60e-40 155
Msa0363760 AT2G21770.1 31.498 327 207 8 219 541 756 1069 9.37e-36 143
Msa0363760 AT4G32410.1 40.426 188 108 4 2 188 459 643 9.52e-40 155
Msa0363760 AT4G32410.1 31.803 305 196 6 228 530 757 1051 2.45e-37 148
Msa0363760 AT5G44030.3 39.362 188 110 4 2 188 120 304 2.74e-39 153
Msa0363760 AT5G44030.3 29.967 307 200 6 228 530 446 741 2.31e-34 138
Msa0363760 AT5G44030.1 39.362 188 110 4 2 188 399 583 1.07e-38 152
Msa0363760 AT5G44030.1 29.967 307 200 6 228 530 725 1020 1.52e-34 139
Msa0363760 AT5G44030.2 39.362 188 110 4 2 188 428 612 1.11e-38 152
Msa0363760 AT5G44030.2 29.967 307 200 6 228 530 754 1049 1.74e-34 139
Msa0363760 AT1G32180.1 40.782 179 92 3 33 198 385 562 1.76e-37 148
Msa0363760 AT1G32180.1 25.472 318 215 8 228 537 660 963 8.06e-23 103
Msa0363760 AT1G32180.2 40.782 179 92 3 33 198 385 562 1.76e-37 148
Msa0363760 AT1G32180.2 25.472 318 215 8 228 537 660 963 8.06e-23 103
Msa0363760 AT3G03050.1 38.806 201 102 5 6 188 518 715 8.85e-35 140
Msa0363760 AT3G03050.1 25.545 321 217 8 228 541 825 1130 9.42e-28 119
Msa0363760 AT1G02730.1 41.451 193 87 7 18 188 555 743 7.09e-34 137
Msa0363760 AT1G02730.1 26.708 322 219 7 225 541 858 1167 7.01e-26 113
Msa0363760 AT5G16910.1 36.408 206 110 5 1 188 516 718 2.54e-33 135
Msa0363760 AT5G16910.1 26.415 318 218 8 228 541 825 1130 8.34e-27 115

Find 128 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCACAAGTTGAAATTTC+TGG 0.092247 3_1:-56405682 Msa0363760:five_prime_UTR
AATAAGCATGTGCTATTTAT+TGG 0.110331 3_1:-56402040 Msa0363760:three_prime_UTR
ATCTCCAATGCTCACTTTAT+TGG 0.161855 3_1:-56402449 Msa0363760:CDS
AATAAATAGCACATGCTTAT+TGG 0.164731 3_1:+56402042 None:intergenic
TATGCCCACCTTGGTATATT+TGG 0.175535 3_1:-56405053 Msa0363760:CDS
CTTTGAAGTTATGTTGAAAT+TGG 0.202850 3_1:+56405014 None:intergenic
CTTATTGTTACTATAATCTA+TGG 0.216698 3_1:-56402924 Msa0363760:CDS
AGTCCTATTTGGTACTCTTT+TGG 0.224030 3_1:-56402973 Msa0363760:CDS
TTTCAAAGTTCAGTCCTATT+TGG 0.238172 3_1:-56402984 Msa0363760:CDS
CCAACAAGAAAAGCTTTCTT+AGG 0.246266 3_1:-56403081 Msa0363760:CDS
CAAACAATTCTCAATCTCTA+AGG 0.258363 3_1:-56404412 Msa0363760:CDS
TTATGTTGAACAAGTGATTC+TGG 0.278433 3_1:+56403039 None:intergenic
TGCCTTTGTGCAGGCTCCTC+AGG 0.278611 3_1:-56404345 Msa0363760:CDS
ATATTTAGTACAAGGTAATT+AGG 0.280086 3_1:+56405507 None:intergenic
AAGATATGAGAAGGAAATTA+TGG 0.297367 3_1:-56402485 Msa0363760:CDS
AATAAAACAGTTTCAAATAA+TGG 0.299693 3_1:+56405400 None:intergenic
GTGGATTTACATGGCTTTGA+TGG 0.323753 3_1:-56404113 Msa0363760:CDS
GGATGCACTTTGCTTCTTCA+TGG 0.325256 3_1:-56404390 Msa0363760:CDS
TTTAACTAAGGTAAGTAAAT+AGG 0.325969 3_1:+56402191 None:intergenic
TTTGAAGTTATGTTGAAATT+GGG 0.331599 3_1:+56405015 None:intergenic
CTTCTTCATGGATGAAGAAA+AGG 0.332640 3_1:-56404378 Msa0363760:CDS
CTACAGATGGGACTACTATA+TGG 0.347725 3_1:-56403174 Msa0363760:intron
AAAGAGTACCAATGAATTCA+TGG 0.349547 3_1:+56404985 None:intergenic
TTAGGTGGGCCCATGTATAT+TGG 0.356630 3_1:-56404089 Msa0363760:CDS
TGTTTGCAAATCAATTTCAT+AGG 0.362504 3_1:+56405558 None:intergenic
AATCCAAAAGAGTACCAAAT+AGG 0.368216 3_1:+56402970 None:intergenic
TTACATGGCTTTGATGGATT+AGG 0.370668 3_1:-56404107 Msa0363760:CDS
CATGTGCTATTTATTGGAAA+TGG 0.372365 3_1:-56402034 Msa0363760:three_prime_UTR
AGTGATTCTGGCAAGGTTGT+TGG 0.384499 3_1:+56403051 None:intergenic
GAACCACAATTGTTGTATAC+AGG 0.385368 3_1:+56405652 None:intergenic
CTACTCGACTTTCCATATCT+TGG 0.397111 3_1:+56405357 None:intergenic
TGGCATCAACAAAAGCAAAA+AGG 0.398473 3_1:+56402581 None:intergenic
CTTCGGTACTTTACCCAACT+TGG 0.400012 3_1:+56405325 None:intergenic
ATAGAGAATGTACCAAGATA+TGG 0.403522 3_1:-56405369 Msa0363760:exon
AGGAAAAGGCCTTGATAGAT+AGG 0.404078 3_1:+56402286 None:intergenic
GTGATCTATACAAGATTGAT+TGG 0.409206 3_1:-56404019 Msa0363760:CDS
AGTAACAATAAGACATTTGA+AGG 0.411909 3_1:+56402935 None:intergenic
ATAGATACTGCTTCATAGAA+AGG 0.419423 3_1:-56405104 Msa0363760:intron
ATCTTCCCTTATCTTTCCTT+AGG 0.425033 3_1:+56402266 None:intergenic
TGATTTGAGTATGCCTCCTT+CGG 0.425383 3_1:+56405308 None:intergenic
CATGGCTTTGATGGATTAGG+TGG 0.429241 3_1:-56404104 Msa0363760:CDS
CCTTATCTTTCCTTAGGAAA+AGG 0.431312 3_1:+56402272 None:intergenic
TTTGAGAGGGAGAGATATAC+TGG 0.433043 3_1:+56402150 None:intergenic
TTTCAACATAACTTCAAAGC+TGG 0.441371 3_1:-56405010 Msa0363760:CDS
TCAAGGAAGGTTGTGTTAAG+TGG 0.448220 3_1:-56402382 Msa0363760:CDS
ATCTCTACTGTGAAAGCAAC+CGG 0.449204 3_1:+56404064 None:intergenic
GTAGTGGAGGATATAATAAC+AGG 0.452467 3_1:-56403147 Msa0363760:CDS
AGGGTAGGAGGTACAATGAA+AGG 0.462869 3_1:-56402652 Msa0363760:CDS
AACAAACCCATCTTCATCTC+TGG 0.467241 3_1:+56405075 None:intergenic
TTGATTAGATTTCAAGTCCA+TGG 0.469427 3_1:-56402735 Msa0363760:intron
GCCTTTGTGCAGGCTCCTCA+GGG 0.487427 3_1:-56404344 Msa0363760:CDS
GTAGAAAATGCATCCAAGTT+GGG 0.487538 3_1:-56405338 Msa0363760:CDS
AGCAAGTGTTAGAATATTTG+AGG 0.490626 3_1:-56402359 Msa0363760:CDS
AGCTGGAGCCATGAATTCAT+TGG 0.491316 3_1:-56404993 Msa0363760:intron
CATATGTAGGTGGATTTACA+TGG 0.491789 3_1:-56404122 Msa0363760:intron
GGGCCCATGTATATTGGAAC+CGG 0.500078 3_1:-56404083 Msa0363760:CDS
GGAACAAGGAAATGCCTTTG+AGG 0.502590 3_1:+56402848 None:intergenic
ACATGAAATTGCCTTTGTGC+AGG 0.505115 3_1:-56404354 Msa0363760:CDS
ATGATGCAATAATACATAGT+TGG 0.508722 3_1:+56402886 None:intergenic
CCTATGAGGAAAACACATCA+TGG 0.509066 3_1:-56403905 Msa0363760:CDS
CTTAATATACCTATCTATCA+AGG 0.509432 3_1:-56402295 Msa0363760:CDS
GATTTAACTGCAACAGACCT+TGG 0.512034 3_1:+56402241 None:intergenic
TTGAAGTTATGTTGAAATTG+GGG 0.520777 3_1:+56405016 None:intergenic
CCAACTATGACATATGCAAA+AGG 0.524828 3_1:+56402706 None:intergenic
ACAAGGAAATGATTTAACTA+AGG 0.527597 3_1:+56402179 None:intergenic
TTCTTCATGGATGAAGAAAA+GGG 0.528326 3_1:-56404377 Msa0363760:CDS
AAGGCATTTCCTTGTTCCCA+CGG 0.533920 3_1:-56402843 Msa0363760:CDS
AGTAGAAAATGCATCCAAGT+TGG 0.534174 3_1:-56405339 Msa0363760:CDS
TCTTGCAAGTTGTACCTATG+AGG 0.538293 3_1:-56403919 Msa0363760:CDS
GTGGAATGAGTTAAGGATGT+GGG 0.538687 3_1:-56402626 Msa0363760:CDS
TGTCATCAATGATTAGCAAT+GGG 0.542769 3_1:-56404469 Msa0363760:CDS
CAATAAGACATTTGAAGGCC+CGG 0.543621 3_1:+56402940 None:intergenic
AAACACATCATGGGGAAAAG+AGG 0.543820 3_1:-56403895 Msa0363760:intron
ATTAACATATTTACCTCATG+AGG 0.548024 3_1:+56404272 None:intergenic
AAACAATTCTCAATCTCTAA+GGG 0.548566 3_1:-56404411 Msa0363760:CDS
TTATTGTTACTATAATCTAT+GGG 0.549266 3_1:-56402923 Msa0363760:CDS
AGCTTTCATAATATCTGCTA+AGG 0.549317 3_1:-56402530 Msa0363760:CDS
GCAACCGGTTCCAATATACA+TGG 0.550511 3_1:+56404079 None:intergenic
AATTTCAACTTGTGAGGTCA+AGG 0.551157 3_1:+56405687 None:intergenic
GAGGTACAATGAAAGGTTGG+TGG 0.555430 3_1:-56402645 Msa0363760:CDS
GACAATGCCAGAGATGAAGA+TGG 0.557521 3_1:-56405082 Msa0363760:CDS
CTATGAGGAAAACACATCAT+GGG 0.558232 3_1:-56403904 Msa0363760:CDS
TGTTGGAATGTTGTCAAGGA+AGG 0.558337 3_1:-56402395 Msa0363760:CDS
GTAGCCAATAAAGTGAGCAT+TGG 0.558896 3_1:+56402445 None:intergenic
GCAATAATACATAGTTGGAA+AGG 0.559961 3_1:+56402891 None:intergenic
AAAAGAAGGACAATTAAAAG+AGG 0.561254 3_1:+56402007 None:intergenic
AGGCATTTCCTTGTTCCCAC+GGG 0.569220 3_1:-56402842 Msa0363760:intron
GTGTCATCAATGATTAGCAA+TGG 0.569343 3_1:-56404470 Msa0363760:CDS
TAGGAGGTACAATGAAAGGT+TGG 0.569415 3_1:-56402648 Msa0363760:CDS
AAAATAAAATATTTAGTACA+AGG 0.569920 3_1:+56405499 None:intergenic
AAGGTTGGTGGAATGAGTTA+AGG 0.570742 3_1:-56402633 Msa0363760:CDS
AGGTTTGTAGACGGTTTGAG+AGG 0.574778 3_1:+56402136 None:intergenic
ATGGCTTTGATGGATTAGGT+GGG 0.580768 3_1:-56404103 Msa0363760:CDS
TGGGTTTGTTATGCCCACCT+TGG 0.587789 3_1:-56405062 Msa0363760:CDS
TCCAGAAATTTCAACTTGTG+AGG 0.595037 3_1:+56405681 None:intergenic
CGAGCCAAATATACCAAGGT+GGG 0.599351 3_1:+56405049 None:intergenic
GTCTTGTTGGAATGTTGTCA+AGG 0.602439 3_1:-56402399 Msa0363760:CDS
CACTTGTTCAACATAAGAGA+TGG 0.602865 3_1:-56403032 Msa0363760:CDS
ACAATGCCAGAGATGAAGAT+GGG 0.604837 3_1:-56405081 Msa0363760:CDS
CCTTCACTATATCTCCTCAA+AGG 0.606499 3_1:-56402862 Msa0363760:CDS
CACAGTAGAGATGCACTATG+TGG 0.607148 3_1:-56404053 Msa0363760:CDS
GGTGGAATGAGTTAAGGATG+TGG 0.607586 3_1:-56402627 Msa0363760:CDS
AACCACAATTGTTGTATACA+GGG 0.608263 3_1:+56405653 None:intergenic
AAAGAAGGACAATTAAAAGA+GGG 0.611601 3_1:+56402008 None:intergenic
TCAAAACTAAGGTTTGTAGA+CGG 0.612463 3_1:+56402127 None:intergenic
GGTTTGTAGACGGTTTGAGA+GGG 0.614408 3_1:+56402137 None:intergenic
ACTACTATATGGTTGTGTAG+TGG 0.617723 3_1:-56403163 Msa0363760:CDS
TATTTCACAAAGATATGAGA+AGG 0.620504 3_1:-56402494 Msa0363760:CDS
CTTTGAGGAGATATAGTGAA+GGG 0.621006 3_1:+56402863 None:intergenic
CAACATAAGAGATGGTCTGA+AGG 0.621250 3_1:-56403024 Msa0363760:CDS
ACTATATGGTTGTGTAGTGG+AGG 0.622506 3_1:-56403160 Msa0363760:CDS
CAAGTTGGGTAAAGTACCGA+AGG 0.626161 3_1:-56405324 Msa0363760:CDS
GTCCCTGTATACAACAATTG+TGG 0.627760 3_1:-56405655 Msa0363760:five_prime_UTR
ACAATTGTTGTATACAGGGA+CGG 0.630805 3_1:+56405657 None:intergenic
GTACTTGAAGAATTGTGTCA+TGG 0.641937 3_1:+56405243 None:intergenic
TATGAGGAAAACACATCATG+GGG 0.644657 3_1:-56403903 Msa0363760:CDS
CCTTTGAGGAGATATAGTGA+AGG 0.650684 3_1:+56402862 None:intergenic
TTGAACAAGTGATTCTGGCA+AGG 0.652845 3_1:+56403044 None:intergenic
TATGCAAAAGGTATGAACCA+TGG 0.652918 3_1:+56402718 None:intergenic
CTCACGAGCCAAATATACCA+AGG 0.657691 3_1:+56405045 None:intergenic
GTTGGGTAAAGTACCGAAGG+AGG 0.662441 3_1:-56405321 Msa0363760:CDS
AGATATACTGGAAAGTGACA+AGG 0.663771 3_1:+56402162 None:intergenic
AAGATAAGGGAAGATTGCCA+AGG 0.672929 3_1:-56402258 Msa0363760:CDS
CAACCGGTTCCAATATACAT+GGG 0.683720 3_1:+56404080 None:intergenic
ACGAGCCAAATATACCAAGG+TGG 0.686997 3_1:+56405048 None:intergenic
GTGATATTGGCAATGCCCTG+AGG 0.690995 3_1:+56404329 None:intergenic
GCCCTGAGGAGCCTGCACAA+AGG 0.697500 3_1:+56404343 None:intergenic
GGAGGCATACTCAAATCACA+AGG 0.701115 3_1:-56405303 Msa0363760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATTAAAAAAAA+TGG - chr3_1:56403536-56403555 Msa0363760:intron 0.0%
!! AAAATAAAATATTTAGTACA+AGG + chr3_1:56402261-56402280 None:intergenic 10.0%
!!! ATTAATTTTTTTTCTTTTGA+AGG - chr3_1:56402925-56402944 Msa0363760:CDS 10.0%
!!! TATAACCAATAAATTTTTTT+GGG + chr3_1:56404271-56404290 None:intergenic 10.0%
!! AAAAATAATAATCAAAACTA+AGG + chr3_1:56405644-56405663 None:intergenic 10.0%
!! AATAAAACAGTTTCAAATAA+TGG + chr3_1:56402360-56402379 None:intergenic 15.0%
!! AAATTCATATGATAATTAAG+TGG - chr3_1:56402613-56402632 Msa0363760:CDS 15.0%
!!! AGTTTAAAATATGATAACTT+TGG - chr3_1:56403960-56403979 Msa0363760:CDS 15.0%
!!! GTATAACCAATAAATTTTTT+TGG + chr3_1:56404272-56404291 None:intergenic 15.0%
!! TTATTGTTACTATAATCTAT+GGG - chr3_1:56404834-56404853 Msa0363760:intron 15.0%
!! ATATTTAGTACAAGGTAATT+AGG + chr3_1:56402253-56402272 None:intergenic 20.0%
!! AAATTCAATCAGAAAAGAAA+AGG + chr3_1:56402544-56402563 None:intergenic 20.0%
!!! AAAAGATATTTTAATACGTG+AGG + chr3_1:56402567-56402586 None:intergenic 20.0%
!!! TTTGAAGTTATGTTGAAATT+GGG + chr3_1:56402745-56402764 None:intergenic 20.0%
!!! TTTTTTTATCAAGAATTCAC+TGG - chr3_1:56402803-56402822 Msa0363760:intron 20.0%
!!! TCGTGGATTTTAATTTAATT+AGG - chr3_1:56402859-56402878 Msa0363760:CDS 20.0%
!! ATGCATTCAAAAATTAAACT+TGG + chr3_1:56402886-56402905 None:intergenic 20.0%
!! TATGTGTATGTATTAATTGT+TGG - chr3_1:56402952-56402971 Msa0363760:CDS 20.0%
!! TGTAATTATGTATTAATCGT+TGG - chr3_1:56403246-56403265 Msa0363760:intron 20.0%
!!! TATGTCATTTTTTGTGATAT+TGG + chr3_1:56403444-56403463 None:intergenic 20.0%
!! ATCACAAAAAATGACATATA+TGG - chr3_1:56403446-56403465 Msa0363760:intron 20.0%
!!! AAAAAAAAAAACTAGGGTTT+TGG - chr3_1:56403934-56403953 Msa0363760:CDS 20.0%
!!! AATATGATAACTTTGGTTTT+TGG - chr3_1:56403967-56403986 Msa0363760:CDS 20.0%
!!! ACAAAGTTTTTCCTTTATTT+TGG - chr3_1:56403992-56404011 Msa0363760:CDS 20.0%
!!! ATTTCTTTTTTGAAATAGAG+AGG + chr3_1:56404050-56404069 None:intergenic 20.0%
!! CTATTTCAAAAAAGAAATAG+AGG - chr3_1:56404052-56404071 Msa0363760:CDS 20.0%
!!! GATAGTGCATTAAATATTTT+TGG - chr3_1:56404108-56404127 Msa0363760:CDS 20.0%
!! TTCTACCCAAAAAAATTTAT+TGG - chr3_1:56404263-56404282 Msa0363760:intron 20.0%
!! CTTATTGTTACTATAATCTA+TGG - chr3_1:56404833-56404852 Msa0363760:intron 20.0%
!! TTTAACTAAGGTAAGTAAAT+AGG + chr3_1:56405569-56405588 None:intergenic 20.0%
!!! ACACTTGTTTTTTGTTTTAC+AGG + chr3_1:56402136-56402155 None:intergenic 25.0%
! TGTTTGCAAATCAATTTCAT+AGG + chr3_1:56402202-56402221 None:intergenic 25.0%
! TTGAAGTTATGTTGAAATTG+GGG + chr3_1:56402744-56402763 None:intergenic 25.0%
!!! CTTTGAAGTTATGTTGAAAT+TGG + chr3_1:56402746-56402765 None:intergenic 25.0%
! TAAAATCCACGATCAAATAT+AGG + chr3_1:56402851-56402870 None:intergenic 25.0%
! AAACAATTCTCAATCTCTAA+GGG - chr3_1:56403346-56403365 Msa0363760:intron 25.0%
! ACAAAAAATGACATATATGG+TGG - chr3_1:56403449-56403468 Msa0363760:intron 25.0%
! ATTAACATATTTACCTCATG+AGG + chr3_1:56403488-56403507 None:intergenic 25.0%
! TAAACTTTGAACACATATGT+AGG - chr3_1:56403622-56403641 Msa0363760:intron 25.0%
! GAATAGAATGACCAAAATAA+AGG + chr3_1:56404006-56404025 None:intergenic 25.0%
! TGATAAGAAAAATGTGCAAA+AGG - chr3_1:56404083-56404102 Msa0363760:CDS 25.0%
! ATGACACTTTGTAACTAATA+GGG + chr3_1:56404215-56404234 None:intergenic 25.0%
! AATGACACTTTGTAACTAAT+AGG + chr3_1:56404216-56404235 None:intergenic 25.0%
! TCATTGCAACTATTGAATAT+TGG - chr3_1:56404231-56404250 Msa0363760:intron 25.0%
! TTGGTTATACAATATGTGTT+TGG - chr3_1:56404282-56404301 Msa0363760:intron 25.0%
! ATAATTGTCATGCAGTTTAA+TGG - chr3_1:56404343-56404362 Msa0363760:CDS 25.0%
! GTTTACTACATATAAATGTG+TGG - chr3_1:56404439-56404458 Msa0363760:CDS 25.0%
!! TTCTCTTATGATAGTGAATT+AGG - chr3_1:56404462-56404481 Msa0363760:CDS 25.0%
!! GGATTATCTATTTTATGCAA+AGG - chr3_1:56404631-56404650 Msa0363760:intron 25.0%
!! TATCTATTTTATGCAAAGGA+TGG - chr3_1:56404635-56404654 Msa0363760:intron 25.0%
! AGTAACAATAAGACATTTGA+AGG + chr3_1:56404825-56404844 None:intergenic 25.0%
! ATGATGCAATAATACATAGT+TGG + chr3_1:56404874-56404893 None:intergenic 25.0%
! AAATCCAAAAAACTTCAACA+TGG + chr3_1:56405199-56405218 None:intergenic 25.0%
! TATTTCACAAAGATATGAGA+AGG - chr3_1:56405263-56405282 Msa0363760:CDS 25.0%
! AAGATATGAGAAGGAAATTA+TGG - chr3_1:56405272-56405291 Msa0363760:CDS 25.0%
!! TTATTGCAAGTTTTACTATG+TGG - chr3_1:56405426-56405445 Msa0363760:intron 25.0%
!! TATTGCAAGTTTTACTATGT+GGG - chr3_1:56405427-56405446 Msa0363760:intron 25.0%
! CTTAATATACCTATCTATCA+AGG - chr3_1:56405462-56405481 Msa0363760:five_prime_UTR 25.0%
! ACAAGGAAATGATTTAACTA+AGG + chr3_1:56405581-56405600 None:intergenic 25.0%
! AATAAATAGCACATGCTTAT+TGG + chr3_1:56405718-56405737 None:intergenic 25.0%
!!! AATAAGCATGTGCTATTTAT+TGG - chr3_1:56405717-56405736 Msa0363760:five_prime_UTR 25.0%
AACCACAATTGTTGTATACA+GGG + chr3_1:56402107-56402126 None:intergenic 30.0%
ATAGAGAATGTACCAAGATA+TGG - chr3_1:56402388-56402407 Msa0363760:CDS 30.0%
! ATCACAAGGAATTTTCTCAA+TGG - chr3_1:56402468-56402487 Msa0363760:CDS 30.0%
! TCACAAGGAATTTTCTCAAT+GGG - chr3_1:56402469-56402488 Msa0363760:CDS 30.0%
ATAGATACTGCTTCATAGAA+AGG - chr3_1:56402653-56402672 Msa0363760:CDS 30.0%
TTTCAACATAACTTCAAAGC+TGG - chr3_1:56402747-56402766 Msa0363760:intron 30.0%
!! AAAGAGTACCAATGAATTCA+TGG + chr3_1:56402775-56402794 None:intergenic 30.0%
!!! AGAATTTTTCAAGACACATG+TGG - chr3_1:56403043-56403062 Msa0363760:CDS 30.0%
TGTCATCAATGATTAGCAAT+GGG - chr3_1:56403288-56403307 Msa0363760:intron 30.0%
CAAACAATTCTCAATCTCTA+AGG - chr3_1:56403345-56403364 Msa0363760:intron 30.0%
TTCTTCATGGATGAAGAAAA+GGG - chr3_1:56403380-56403399 Msa0363760:intron 30.0%
! TTATTTTCGTATACCTCATG+AGG - chr3_1:56403472-56403491 Msa0363760:intron 30.0%
GTTCAAAGTTTAGAAACAGT+TGG + chr3_1:56403614-56403633 None:intergenic 30.0%
GTGATCTATACAAGATTGAT+TGG - chr3_1:56403738-56403757 Msa0363760:intron 30.0%
CGTACTTATTTAAACCTTTG+TGG - chr3_1:56404132-56404151 Msa0363760:intron 30.0%
TGACACTTTGTAACTAATAG+GGG + chr3_1:56404214-56404233 None:intergenic 30.0%
!! ATCCTTTTTGTTATACGTCA+AGG - chr3_1:56404485-56404504 Msa0363760:intron 30.0%
! TGAATACTTTTCACTACAGA+TGG - chr3_1:56404570-56404589 Msa0363760:intron 30.0%
! GAATACTTTTCACTACAGAT+GGG - chr3_1:56404571-56404590 Msa0363760:intron 30.0%
TTATGTTGAACAAGTGATTC+TGG + chr3_1:56404721-56404740 None:intergenic 30.0%
TTTCAAAGTTCAGTCCTATT+TGG - chr3_1:56404773-56404792 Msa0363760:intron 30.0%
!! AATCCAAAAGAGTACCAAAT+AGG + chr3_1:56404790-56404809 None:intergenic 30.0%
GCAATAATACATAGTTGGAA+AGG + chr3_1:56404869-56404888 None:intergenic 30.0%
!!! TAGTTTTAAAATGCAGTCTG+AGG + chr3_1:56404957-56404976 None:intergenic 30.0%
! TTGATTAGATTTCAAGTCCA+TGG - chr3_1:56405022-56405041 Msa0363760:CDS 30.0%
!! ACTGTTTGTTAGAGTTTTTG+AGG - chr3_1:56405085-56405104 Msa0363760:CDS 30.0%
!! CTGTTTGTTAGAGTTTTTGA+GGG - chr3_1:56405086-56405105 Msa0363760:CDS 30.0%
AGCTTTCATAATATCTGCTA+AGG - chr3_1:56405227-56405246 Msa0363760:intron 30.0%
AGCAAGTGTTAGAATATTTG+AGG - chr3_1:56405398-56405417 Msa0363760:five_prime_UTR 30.0%
! AGTTTTACTATGTGGGATTT+TGG - chr3_1:56405434-56405453 Msa0363760:intron 30.0%
! CTTTTCCTAAGGAAAGATAA+GGG - chr3_1:56405486-56405505 Msa0363760:five_prime_UTR 30.0%
TCAAAACTAAGGTTTGTAGA+CGG + chr3_1:56405633-56405652 None:intergenic 30.0%
!! CATGTGCTATTTATTGGAAA+TGG - chr3_1:56405723-56405742 Msa0363760:five_prime_UTR 30.0%
AATTTCAACTTGTGAGGTCA+AGG + chr3_1:56402073-56402092 None:intergenic 35.0%
! ACCTCACAAGTTGAAATTTC+TGG - chr3_1:56402075-56402094 Msa0363760:three_prime_UTR 35.0%
TCCAGAAATTTCAACTTGTG+AGG + chr3_1:56402079-56402098 None:intergenic 35.0%
ACAATTGTTGTATACAGGGA+CGG + chr3_1:56402103-56402122 None:intergenic 35.0%
GAACCACAATTGTTGTATAC+AGG + chr3_1:56402108-56402127 None:intergenic 35.0%
AGTAGAAAATGCATCCAAGT+TGG - chr3_1:56402418-56402437 Msa0363760:CDS 35.0%
GTAGAAAATGCATCCAAGTT+GGG - chr3_1:56402419-56402438 Msa0363760:CDS 35.0%
! CACAAGGAATTTTCTCAATG+GGG - chr3_1:56402470-56402489 Msa0363760:CDS 35.0%
GTACTTGAAGAATTGTGTCA+TGG + chr3_1:56402517-56402536 None:intergenic 35.0%
ACTAAGCCTATATTTGATCG+TGG - chr3_1:56402842-56402861 Msa0363760:intron 35.0%
AAGCGTGTCATATCAATGTA+AGG - chr3_1:56402989-56403008 Msa0363760:CDS 35.0%
GTACTATTTGCCACAATTCA+AGG + chr3_1:56403122-56403141 None:intergenic 35.0%
GGCAAATAGTACATTGTGAT+TGG - chr3_1:56403130-56403149 Msa0363760:CDS 35.0%
GTGTCATCAATGATTAGCAA+TGG - chr3_1:56403287-56403306 Msa0363760:intron 35.0%
CTTCTTCATGGATGAAGAAA+AGG - chr3_1:56403379-56403398 Msa0363760:intron 35.0%
TGGTGTAAGTAAGCTACTAT+TGG + chr3_1:56403594-56403613 None:intergenic 35.0%
ACTTTGAACACATATGTAGG+TGG - chr3_1:56403625-56403644 Msa0363760:intron 35.0%
! CATATGTAGGTGGATTTACA+TGG - chr3_1:56403635-56403654 Msa0363760:intron 35.0%
!! TTACATGGCTTTGATGGATT+AGG - chr3_1:56403650-56403669 Msa0363760:intron 35.0%
CTATGAGGAAAACACATCAT+GGG - chr3_1:56403853-56403872 Msa0363760:intron 35.0%
TATGAGGAAAACACATCATG+GGG - chr3_1:56403854-56403873 Msa0363760:intron 35.0%
TTGAAGAGAAAGAACCACAA+AGG + chr3_1:56404149-56404168 None:intergenic 35.0%
ACTGCATGACAATTATTGTG+AGG + chr3_1:56404339-56404358 None:intergenic 35.0%
ATGCAGTTTAATGGCAGATA+TGG - chr3_1:56404352-56404371 Msa0363760:CDS 35.0%
CTCCTTGACGTATAACAAAA+AGG + chr3_1:56404490-56404509 None:intergenic 35.0%
ACTACTATATGGTTGTGTAG+TGG - chr3_1:56404594-56404613 Msa0363760:intron 35.0%
! GTAGTGGAGGATATAATAAC+AGG - chr3_1:56404610-56404629 Msa0363760:intron 35.0%
! CCTAAGAAAGCTTTTCTTGT+TGG + chr3_1:56404679-56404698 None:intergenic 35.0%
CCAACAAGAAAAGCTTTCTT+AGG - chr3_1:56404676-56404695 Msa0363760:intron 35.0%
CACTTGTTCAACATAAGAGA+TGG - chr3_1:56404725-56404744 Msa0363760:intron 35.0%
! AGTCCTATTTGGTACTCTTT+TGG - chr3_1:56404784-56404803 Msa0363760:intron 35.0%
! CTTTGAGGAGATATAGTGAA+GGG + chr3_1:56404897-56404916 None:intergenic 35.0%
! AGTAACATTTTCATACCCGT+GGG + chr3_1:56404933-56404952 None:intergenic 35.0%
! TAGTAACATTTTCATACCCG+TGG + chr3_1:56404934-56404953 None:intergenic 35.0%
! TATGCAAAAGGTATGAACCA+TGG + chr3_1:56405042-56405061 None:intergenic 35.0%
CCAACTATGACATATGCAAA+AGG + chr3_1:56405054-56405073 None:intergenic 35.0%
! CCTTTTGCATATGTCATAGT+TGG - chr3_1:56405051-56405070 Msa0363760:CDS 35.0%
!! TTGTTAGAGTTTTTGAGGGT+AGG - chr3_1:56405090-56405109 Msa0363760:CDS 35.0%
TGGCATCAACAAAAGCAAAA+AGG + chr3_1:56405179-56405198 None:intergenic 35.0%
!!! GATGCCATGTTGAAGTTTTT+TGG - chr3_1:56405192-56405211 Msa0363760:intron 35.0%
ATCTCCAATGCTCACTTTAT+TGG - chr3_1:56405308-56405327 Msa0363760:CDS 35.0%
! CTGAATCTGTTTTGTCTTGT+TGG - chr3_1:56405345-56405364 Msa0363760:CDS 35.0%
CCTTATCTTTCCTTAGGAAA+AGG + chr3_1:56405488-56405507 None:intergenic 35.0%
! CCTTTTCCTAAGGAAAGATA+AGG - chr3_1:56405485-56405504 Msa0363760:five_prime_UTR 35.0%
ATCTTCCCTTATCTTTCCTT+AGG + chr3_1:56405494-56405513 None:intergenic 35.0%
AGATATACTGGAAAGTGACA+AGG + chr3_1:56405598-56405617 None:intergenic 35.0%
GTCCCTGTATACAACAATTG+TGG - chr3_1:56402102-56402121 Msa0363760:three_prime_UTR 40.0%
CTACTCGACTTTCCATATCT+TGG + chr3_1:56402403-56402422 None:intergenic 40.0%
TGATTTGAGTATGCCTCCTT+CGG + chr3_1:56402452-56402471 None:intergenic 40.0%
ACAATGCCAGAGATGAAGAT+GGG - chr3_1:56402676-56402695 Msa0363760:CDS 40.0%
AACAAACCCATCTTCATCTC+TGG + chr3_1:56402685-56402704 None:intergenic 40.0%
TATGCCCACCTTGGTATATT+TGG - chr3_1:56402704-56402723 Msa0363760:CDS 40.0%
ATGACACGCTTATCTGCATT+GGG + chr3_1:56402980-56402999 None:intergenic 40.0%
TATGACACGCTTATCTGCAT+TGG + chr3_1:56402981-56403000 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr3_1:56403096-56403115 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG + chr3_1:56403119-56403138 None:intergenic 40.0%
TTGGTCCTCAATGCAGATAA+GGG - chr3_1:56403265-56403284 Msa0363760:intron 40.0%
ACATGAAATTGCCTTTGTGC+AGG - chr3_1:56403403-56403422 Msa0363760:intron 40.0%
!! GTGGATTTACATGGCTTTGA+TGG - chr3_1:56403644-56403663 Msa0363760:intron 40.0%
!! ATGGCTTTGATGGATTAGGT+GGG - chr3_1:56403654-56403673 Msa0363760:intron 40.0%
! CAACCGGTTCCAATATACAT+GGG + chr3_1:56403680-56403699 None:intergenic 40.0%
ATCTCTACTGTGAAAGCAAC+CGG + chr3_1:56403696-56403715 None:intergenic 40.0%
TCTTGCAAGTTGTACCTATG+AGG - chr3_1:56403838-56403857 Msa0363760:intron 40.0%
! CCATGATGTGTTTTCCTCAT+AGG + chr3_1:56403855-56403874 None:intergenic 40.0%
CCTATGAGGAAAACACATCA+TGG - chr3_1:56403852-56403871 Msa0363760:intron 40.0%
AAACACATCATGGGGAAAAG+AGG - chr3_1:56403862-56403881 Msa0363760:intron 40.0%
CTACAGATGGGACTACTATA+TGG - chr3_1:56404583-56404602 Msa0363760:intron 40.0%
ACTATATGGTTGTGTAGTGG+AGG - chr3_1:56404597-56404616 Msa0363760:intron 40.0%
TTGAACAAGTGATTCTGGCA+AGG + chr3_1:56404716-56404735 None:intergenic 40.0%
CAACATAAGAGATGGTCTGA+AGG - chr3_1:56404733-56404752 Msa0363760:intron 40.0%
! CTCTTTTGGATTGATCAGTC+CGG - chr3_1:56404798-56404817 Msa0363760:intron 40.0%
! TCTTTTGGATTGATCAGTCC+GGG - chr3_1:56404799-56404818 Msa0363760:intron 40.0%
CAATAAGACATTTGAAGGCC+CGG + chr3_1:56404820-56404839 None:intergenic 40.0%
! CCTTTGAGGAGATATAGTGA+AGG + chr3_1:56404898-56404917 None:intergenic 40.0%
CCTTCACTATATCTCCTCAA+AGG - chr3_1:56404895-56404914 Msa0363760:intron 40.0%
!! TTAGAGTTTTTGAGGGTAGG+AGG - chr3_1:56405093-56405112 Msa0363760:CDS 40.0%
! TAGGAGGTACAATGAAAGGT+TGG - chr3_1:56405109-56405128 Msa0363760:intron 40.0%
!! AAGGTTGGTGGAATGAGTTA+AGG - chr3_1:56405124-56405143 Msa0363760:intron 40.0%
GTGGAATGAGTTAAGGATGT+GGG - chr3_1:56405131-56405150 Msa0363760:intron 40.0%
GTAGCCAATAAAGTGAGCAT+TGG + chr3_1:56405315-56405334 None:intergenic 40.0%
! GTCTTGTTGGAATGTTGTCA+AGG - chr3_1:56405358-56405377 Msa0363760:CDS 40.0%
TGTTGGAATGTTGTCAAGGA+AGG - chr3_1:56405362-56405381 Msa0363760:CDS 40.0%
TCAAGGAAGGTTGTGTTAAG+TGG - chr3_1:56405375-56405394 Msa0363760:exon 40.0%
AGGAAAAGGCCTTGATAGAT+AGG + chr3_1:56405474-56405493 None:intergenic 40.0%
! TCTATCAAGGCCTTTTCCTA+AGG - chr3_1:56405475-56405494 Msa0363760:five_prime_UTR 40.0%
AAGATAAGGGAAGATTGCCA+AGG - chr3_1:56405499-56405518 Msa0363760:five_prime_UTR 40.0%
GATTTAACTGCAACAGACCT+TGG + chr3_1:56405519-56405538 None:intergenic 40.0%
TTTGAGAGGGAGAGATATAC+TGG + chr3_1:56405610-56405629 None:intergenic 40.0%
CTTCGGTACTTTACCCAACT+TGG + chr3_1:56402435-56402454 None:intergenic 45.0%
!! CAAGTTGGGTAAAGTACCGA+AGG - chr3_1:56402433-56402452 Msa0363760:CDS 45.0%
! GGAGGCATACTCAAATCACA+AGG - chr3_1:56402454-56402473 Msa0363760:CDS 45.0%
GACAATGCCAGAGATGAAGA+TGG - chr3_1:56402675-56402694 Msa0363760:CDS 45.0%
CGAGCCAAATATACCAAGGT+GGG + chr3_1:56402711-56402730 None:intergenic 45.0%
ACGAGCCAAATATACCAAGG+TGG + chr3_1:56402712-56402731 None:intergenic 45.0%
CTCACGAGCCAAATATACCA+AGG + chr3_1:56402715-56402734 None:intergenic 45.0%
AGCTGGAGCCATGAATTCAT+TGG - chr3_1:56402764-56402783 Msa0363760:intron 45.0%
TGACACGCTTATCTGCATTG+GGG + chr3_1:56402979-56402998 None:intergenic 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr3_1:56403102-56403121 None:intergenic 45.0%
GTTGGTCCTCAATGCAGATA+AGG - chr3_1:56403264-56403283 Msa0363760:intron 45.0%
TGACACCCTTATCTGCATTG+AGG + chr3_1:56403273-56403292 None:intergenic 45.0%
GGATGCACTTTGCTTCTTCA+TGG - chr3_1:56403367-56403386 Msa0363760:intron 45.0%
!! CATGGCTTTGATGGATTAGG+TGG - chr3_1:56403653-56403672 Msa0363760:intron 45.0%
TTAGGTGGGCCCATGTATAT+TGG - chr3_1:56403668-56403687 Msa0363760:intron 45.0%
! GCAACCGGTTCCAATATACA+TGG + chr3_1:56403681-56403700 None:intergenic 45.0%
CACAGTAGAGATGCACTATG+TGG - chr3_1:56403704-56403723 Msa0363760:intron 45.0%
GATGAATGCAAGAACTTGCG+AGG - chr3_1:56404304-56404323 Msa0363760:CDS 45.0%
AGTGATTCTGGCAAGGTTGT+TGG + chr3_1:56404709-56404728 None:intergenic 45.0%
GGAACAAGGAAATGCCTTTG+AGG + chr3_1:56404912-56404931 None:intergenic 45.0%
! AAGGCATTTCCTTGTTCCCA+CGG - chr3_1:56404914-56404933 Msa0363760:intron 45.0%
! TTTTCATACCCGTGGGAACA+AGG + chr3_1:56404926-56404945 None:intergenic 45.0%
! AGGGTAGGAGGTACAATGAA+AGG - chr3_1:56405105-56405124 Msa0363760:intron 45.0%
GAGGTACAATGAAAGGTTGG+TGG - chr3_1:56405112-56405131 Msa0363760:intron 45.0%
GGTGGAATGAGTTAAGGATG+TGG - chr3_1:56405130-56405149 Msa0363760:intron 45.0%
GGTTTGTAGACGGTTTGAGA+GGG + chr3_1:56405623-56405642 None:intergenic 45.0%
AGGTTTGTAGACGGTTTGAG+AGG + chr3_1:56405624-56405643 None:intergenic 45.0%
!!! TTTTATTATTAAATAATCTT+GGG + chr3_1:56402301-56402320 None:intergenic 5.0%
!!! ATTTTATTATTAAATAATCT+TGG + chr3_1:56402302-56402321 None:intergenic 5.0%
!! AGATTATTTAATAATAAAAT+TGG - chr3_1:56402302-56402321 Msa0363760:CDS 5.0%
!! TAAAAAAAAAAAAAAAAACT+AGG - chr3_1:56403927-56403946 Msa0363760:CDS 5.0%
!! AAAAAAAAAAAAAAAAACTA+GGG - chr3_1:56403928-56403947 Msa0363760:CDS 5.0%
!! GTTGGGTAAAGTACCGAAGG+AGG - chr3_1:56402436-56402455 Msa0363760:CDS 50.0%
!! TGGGTTTGTTATGCCCACCT+TGG - chr3_1:56402695-56402714 Msa0363760:CDS 50.0%
AGCCACACCTCCTTGAATTG+TGG - chr3_1:56403109-56403128 Msa0363760:CDS 50.0%
TGCCACAATTCAAGGAGGTG+TGG + chr3_1:56403114-56403133 None:intergenic 50.0%
GTGATATTGGCAATGCCCTG+AGG + chr3_1:56403431-56403450 None:intergenic 50.0%
GGGCCCATGTATATTGGAAC+CGG - chr3_1:56403674-56403693 Msa0363760:intron 50.0%
AGGCATTTCCTTGTTCCCAC+GGG - chr3_1:56404915-56404934 Msa0363760:intron 50.0%
TGCCTTTGTGCAGGCTCCTC+AGG - chr3_1:56403412-56403431 Msa0363760:intron 60.0%
GCCTTTGTGCAGGCTCCTCA+GGG - chr3_1:56403413-56403432 Msa0363760:intron 60.0%
GCCCTGAGGAGCCTGCACAA+AGG + chr3_1:56403417-56403436 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 56402014 56405765 56402014 ID=Msa0363760;Name=Msa0363760
chr3_1 mRNA 56402014 56405765 56402014 ID=Msa0363760-mRNA-1;Parent=Msa0363760;Name=Msa0363760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=354|1|1|1|0.83|0.71|7|178|541
chr3_1 exon 56402014 56402749 56402014 ID=Msa0363760-mRNA-1:exon:10430;Parent=Msa0363760-mRNA-1
chr3_1 exon 56402843 56403190 56402843 ID=Msa0363760-mRNA-1:exon:10429;Parent=Msa0363760-mRNA-1
chr3_1 exon 56403896 56404135 56403896 ID=Msa0363760-mRNA-1:exon:10428;Parent=Msa0363760-mRNA-1
chr3_1 exon 56404286 56404498 56404286 ID=Msa0363760-mRNA-1:exon:10427;Parent=Msa0363760-mRNA-1
chr3_1 exon 56404994 56405122 56404994 ID=Msa0363760-mRNA-1:exon:10426;Parent=Msa0363760-mRNA-1
chr3_1 exon 56405247 56405432 56405247 ID=Msa0363760-mRNA-1:exon:10425;Parent=Msa0363760-mRNA-1
chr3_1 exon 56405460 56405765 56405460 ID=Msa0363760-mRNA-1:exon:10424;Parent=Msa0363760-mRNA-1
chr3_1 five_prime_UTR 56405460 56405765 56405460 ID=Msa0363760-mRNA-1:five_prime_utr;Parent=Msa0363760-mRNA-1
chr3_1 five_prime_UTR 56405385 56405432 56405385 ID=Msa0363760-mRNA-1:five_prime_utr;Parent=Msa0363760-mRNA-1
chr3_1 CDS 56405247 56405384 56405247 ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1 CDS 56404994 56405122 56404994 ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1 CDS 56404286 56404498 56404286 ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1 CDS 56403896 56404135 56403896 ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1 CDS 56402843 56403190 56402843 ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1 CDS 56402192 56402749 56402192 ID=Msa0363760-mRNA-1:cds;Parent=Msa0363760-mRNA-1
chr3_1 three_prime_UTR 56402014 56402191 56402014 ID=Msa0363760-mRNA-1:three_prime_utr;Parent=Msa0363760-mRNA-1
Gene Sequence

>Msa0363760

ATGTACCAAGATATGGAAAGTCGAGTAGAAAATGCATCCAAGTTGGGTAAAGTACCGAAGGAGGCATACTCAAATCACAAGGAATTTTCTCAATGGGGTTCATATTCATCAAGACGTGACCATGACACAATTCTTCAAATACTGCTTCATAGAAAGGACAATGCCAGAGATGAAGATGGGTTTGTTATGCCCACCTTGGTATATTTGGCTCGTGAGAAAAGACCCCAATTTCAACATAACTTCAAAGCTGGAGCCATGAATTCATTGATAAGGGTGTCATCAATGATTAGCAATGGGAAAATAATTCTCAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTTTGCTTCTTCATGGATGAAGAAAAGGGACATGAAATTGCCTTTGTGCAGGCTCCTCAGGGCATTGCCAATATCACAAAAAATGACATATATGGTGGTTATTTTCGTATACCTCATGAGGTGGATTTACATGGCTTTGATGGATTAGGTGGGCCCATGTATATTGGAACCGGTTGCTTTCACAGTAGAGATGCACTATGTGGAAGAAAGTATAGTGATCTATACAAGATTGATTGGAAGAATGTAAATGATGAAAATATTGATCATATGATAAAAGAAGAAAGTTTGCAAGAGCTAGAAGAGAAATCAAAGACTCTTGCAAGTTGTACCTATGAGGAAAACACATCATGGGGAAAAGAGATGGGACTACTATATGGTTGTGTAGTGGAGGATATAATAACAGGATTATCTATTTTATGCAAAGGATGGACATCAATATATTATAATCCAACAAGAAAAGCTTTCTTAGGTTTGACTCCAACAACCTTGCCAGAATCACTTGTTCAACATAAGAGATGGTCTGAAGGACAATTTCAAGTTGCACTTTCAAAGTTCAGTCCTATTTGGTACTCTTTTGGATTGATCAGTCCGGGCCTTCAAATGTCTTATTGTTACTATAATCTATGGGTGTTAAACTCCTTTCCAACTATGTATTATTGCATCATCCCTTCACTATATCTCCTCAAAGGCATTTCCTTGTTCCCACGGATTTCAAGTCCATGGTTCATACCTTTTGCATATGTCATAGTTGGTGATTCAACATACTGTTTGTTAGAGTTTTTGAGGGTAGGAGGTACAATGAAAGGTTGGTGGAATGAGTTAAGGATGTGGGTTTACAAGAGAACAAGTTCTTACCTTTTTGCTTTTGTTGATGCCATGTTGAAGTTTTTTGGATTTTCAAATTCAGCTTTCATAATATCTGCTAAGGTAGCTGAAGAAAATATTTCACAAAGATATGAGAAGGAAATTATGGAGTTTCGAAACTCATCTCCAATGCTCACTTTATTGGCTACACTTGCAATGCTGAATCTGTTTTGTCTTGTTGGAATGTTGTCAAGGAAGGTTGTGTTAAGTGGAGCAAGTGTTAGAATATTTGAGGCTATGTTATTGCAAGTTTTACTATGTGGGATTTTGGTTGTTCTTAATATACCTATCTATCAAGGCCTTTTCCTAAGGAAAGATAAGGGAAGATTGCCAAGGTCTGTTGCAGTTAAATCAACAACATTAGCTCTAAGTGTATGTGTCCTATTTACTTACCTTAGTTAA
Protein sequence

>Msa0363760

MYQDMESRVENASKLGKVPKEAYSNHKEFSQWGSYSSRRDHDTILQILLHRKDNARDEDGFVMPTLVYLAREKRPQFQHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSLRDALCFFMDEEKGHEIAFVQAPQGIANITKNDIYGGYFRIPHEVDLHGFDGLGGPMYIGTGCFHSRDALCGRKYSDLYKIDWKNVNDENIDHMIKEESLQELEEKSKTLASCTYEENTSWGKEMGLLYGCVVEDIITGLSILCKGWTSIYYNPTRKAFLGLTPTTLPESLVQHKRWSEGQFQVALSKFSPIWYSFGLISPGLQMSYCYYNLWVLNSFPTMYYCIIPSLYLLKGISLFPRISSPWFIPFAYVIVGDSTYCLLEFLRVGGTMKGWWNELRMWVYKRTSSYLFAFVDAMLKFFGFSNSAFIISAKVAEENISQRYEKEIMEFRNSSPMLTLLATLAMLNLFCLVGMLSRKVVLSGASVRIFEAMLLQVLLCGILVVLNIPIYQGLFLRKDKGRLPRSVAVKSTTLALSVCVLFTYLS*