AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455580 MtrunA17_Chr3g0102531 90.463 734 62 2 1 729 1 731 0.0 1362
Msa0455580 MtrunA17_Chr3g0102541 88.587 736 78 2 1 730 1 736 0.0 1342
Msa0455580 MtrunA17_Chr3g0102551 65.814 743 230 7 2 728 4 738 0.0 1013
Msa0455580 MtrunA17_Chr4g0046401 36.182 702 408 14 35 713 37 721 3.14e-144 439
Msa0455580 MtrunA17_Chr1g0186381 34.037 758 444 14 3 729 5 737 2.04e-141 432
Msa0455580 MtrunA17_Chr2g0298581 34.133 709 405 14 21 705 21 691 4.41e-130 401
Msa0455580 MtrunA17_Chr2g0307191 33.196 726 422 16 1 704 6 690 2.26e-129 399
Msa0455580 MtrunA17_Chr3g0095791 33.826 677 391 13 52 704 46 689 5.27e-129 399
Msa0455580 MtrunA17_Chr3g0077511 34.018 682 388 12 52 705 46 693 6.73e-129 398
Msa0455580 MtrunA17_Chr2g0322361 34.507 710 401 17 52 720 52 738 1.89e-125 391
Msa0455580 MtrunA17_Chr2g0284211 34.828 669 348 11 38 622 197 861 7.78e-125 396
Msa0455580 MtrunA17_Chr8g0379241 34.783 667 350 12 38 623 212 874 8.95e-124 393
Msa0455580 MtrunA17_Chr8g0364641 32.091 751 422 16 38 719 221 952 4.93e-123 391
Msa0455580 MtrunA17_Chr2g0322371 33.475 705 410 17 52 720 47 728 4.00e-119 374
Msa0455580 MtrunA17_Chr1g0183381 31.783 774 431 21 18 720 129 876 1.26e-117 375
Msa0455580 MtrunA17_Chr4g0025201 33.426 721 414 19 38 719 37 730 2.50e-115 364
Msa0455580 MtrunA17_Chr2g0322351 33.196 726 417 19 38 728 37 729 1.01e-113 360
Msa0455580 MtrunA17_Chr1g0201731 33.432 679 354 15 38 622 307 981 2.81e-113 368
Msa0455580 MtrunA17_Chr4g0073711 30.962 759 420 19 44 719 272 1009 1.13e-106 349
Msa0455580 MtrunA17_Chr7g0269741 28.351 843 425 25 44 729 334 1154 7.41e-87 297
Msa0455580 MtrunA17_Chr3g0088821 41.737 357 187 9 38 377 287 639 3.39e-82 283
Msa0455580 MtrunA17_Chr3g0088821 30.368 326 195 7 406 719 744 1049 3.32e-33 137
Msa0455580 MtrunA17_Chr3g0137951 41.457 357 188 8 38 377 297 649 3.24e-81 280
Msa0455580 MtrunA17_Chr3g0137951 35.096 208 134 1 417 623 763 970 8.76e-36 145
Msa0455580 MtrunA17_Chr8g0383701 40.896 357 190 9 38 377 305 657 4.36e-81 280
Msa0455580 MtrunA17_Chr8g0383701 31.889 323 197 7 404 719 761 1067 5.15e-37 149
Msa0455580 MtrunA17_Chr8g0352231 39.560 364 199 8 33 379 282 641 9.91e-80 276
Msa0455580 MtrunA17_Chr8g0352231 30.061 326 196 7 406 719 744 1049 1.59e-33 138
Msa0455580 MtrunA17_Chr2g0297351 27.966 826 436 29 44 726 196 1005 1.12e-78 272
Msa0455580 MtrunA17_Chr7g0267731 39.344 366 201 8 29 377 190 551 5.07e-77 267
Msa0455580 MtrunA17_Chr7g0267731 28.150 373 222 9 375 729 623 967 1.74e-33 138
Msa0455580 MtrunA17_Chr3g0078671 40.056 357 193 7 38 377 254 606 2.31e-76 266
Msa0455580 MtrunA17_Chr3g0078671 32.812 320 196 8 417 729 723 1030 2.27e-35 144
Msa0455580 MtrunA17_Chr2g0296991 36.318 402 226 9 2 377 193 590 7.61e-75 261
Msa0455580 MtrunA17_Chr2g0296991 30.864 324 195 8 406 719 711 1015 4.44e-36 146
Msa0455580 MtrunA17_Chr1g0165421 34.014 441 213 12 22 389 270 705 2.38e-70 249
Msa0455580 MtrunA17_Chr1g0165421 25.240 313 226 5 414 726 808 1112 1.24e-23 107
Msa0455580 MtrunA17_Chr1g0165411 32.473 465 230 13 29 423 268 718 7.66e-70 248
Msa0455580 MtrunA17_Chr1g0165411 25.312 320 229 5 411 729 777 1087 2.45e-23 106
Msa0455580 MtrunA17_Chr5g0410641 34.406 404 194 10 44 377 289 691 1.52e-69 247
Msa0455580 MtrunA17_Chr5g0410641 25.868 317 225 6 414 729 798 1105 9.49e-24 107
Msa0455580 MtrunA17_Chr4g0039801 34.660 427 207 11 21 377 288 712 1.06e-68 245
Msa0455580 MtrunA17_Chr4g0039801 28.923 325 205 12 414 729 819 1126 5.66e-26 114
Msa0455580 MtrunA17_Chr2g0322341 37.183 355 195 10 1 342 3 342 2.69e-68 228
Msa0455580 MtrunA17_Chr7g0274751 34.694 392 216 11 24 377 111 500 2.48e-63 226
Msa0455580 MtrunA17_Chr2g0322331 31.307 329 206 9 407 729 60 374 4.10e-33 131
Msa0455580 MtrunA17_Chr2g0307241 38.674 181 89 6 1 174 6 171 1.41e-30 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455580 AT1G55850.1 53.689 732 309 8 8 729 18 729 0.0 790
Msa0455580 AT4G23990.1 37.842 732 424 12 1 720 28 740 1.39e-165 495
Msa0455580 AT4G24000.1 37.135 719 416 12 13 720 18 711 3.44e-165 493
Msa0455580 AT4G24010.1 36.501 726 427 10 13 724 21 726 1.73e-159 480
Msa0455580 AT5G17420.1 33.841 656 355 12 44 623 259 911 7.19e-122 389
Msa0455580 AT2G25540.1 32.817 774 415 18 38 719 271 1031 8.21e-122 390
Msa0455580 AT4G23990.2 37.407 540 322 6 190 724 2 530 5.56e-119 368
Msa0455580 AT2G32530.1 33.106 734 422 22 34 720 35 746 1.11e-116 369
Msa0455580 AT4G24000.2 35.940 537 319 8 190 720 2 519 1.04e-115 359
Msa0455580 AT4G15320.5 32.855 767 435 18 8 720 10 750 1.62e-115 365
Msa0455580 AT4G18780.1 31.660 777 414 17 38 719 200 954 1.93e-115 371
Msa0455580 AT4G15320.3 32.855 767 435 18 8 720 10 750 1.95e-115 365
Msa0455580 AT2G32540.1 33.155 748 397 23 42 725 43 751 5.90e-114 362
Msa0455580 AT4G15320.4 32.481 782 433 19 8 720 10 765 3.54e-113 360
Msa0455580 AT2G32620.1 32.715 755 401 26 38 725 39 753 5.07e-107 343
Msa0455580 AT2G32610.1 31.935 739 399 23 34 705 35 736 7.64e-106 340
Msa0455580 AT4G15290.1 32.796 744 411 23 42 729 43 753 7.64e-106 340
Msa0455580 AT4G15320.2 31.676 704 356 17 8 625 10 674 1.15e-97 319
Msa0455580 AT2G32620.3 34.291 592 307 20 38 579 39 598 1.50e-96 311
Msa0455580 AT4G38190.1 28.047 845 449 24 18 729 272 1090 3.31e-95 319
Msa0455580 AT2G32620.4 32.421 694 365 23 99 725 1 657 1.07e-93 305
Msa0455580 AT4G15320.1 30.388 747 352 19 8 625 10 717 1.90e-91 304
Msa0455580 AT2G32620.2 35.294 510 258 16 38 501 39 522 4.45e-89 290
Msa0455580 AT4G39350.1 40.336 357 192 9 38 377 293 645 1.14e-80 279
Msa0455580 AT4G39350.1 36.842 209 131 1 417 624 761 969 6.84e-36 146
Msa0455580 AT5G05170.1 39.617 366 200 8 29 377 266 627 3.80e-80 277
Msa0455580 AT5G05170.1 29.595 321 204 7 406 719 731 1036 3.39e-31 131
Msa0455580 AT4G32410.1 37.984 387 215 9 8 377 265 643 4.75e-80 277
Msa0455580 AT4G32410.1 35.577 208 133 1 417 623 757 964 3.84e-36 147
Msa0455580 AT5G64740.1 40.896 357 190 9 38 377 292 644 5.40e-79 274
Msa0455580 AT5G64740.1 30.154 325 210 6 399 719 744 1055 7.39e-34 140
Msa0455580 AT5G09870.1 40.616 357 191 9 38 377 280 632 8.50e-79 273
Msa0455580 AT5G09870.1 30.154 325 210 7 399 719 729 1040 5.38e-33 137
Msa0455580 AT2G21770.1 40.616 357 191 8 38 377 298 650 1.25e-77 270
Msa0455580 AT2G21770.1 32.595 316 196 8 408 719 756 1058 1.56e-35 145
Msa0455580 AT5G44030.2 38.462 377 201 8 18 377 250 612 1.45e-77 270
Msa0455580 AT5G44030.2 32.063 315 183 9 417 719 754 1049 1.12e-33 139
Msa0455580 AT5G44030.1 38.462 377 201 8 18 377 221 583 1.50e-77 270
Msa0455580 AT5G44030.1 32.063 315 183 9 417 719 725 1020 1.08e-33 139
Msa0455580 AT2G33100.2 26.891 833 442 23 44 726 204 1019 2.62e-77 269
Msa0455580 AT2G33100.1 26.891 833 442 23 44 726 204 1019 2.62e-77 269
Msa0455580 AT1G32180.1 33.806 423 198 10 44 387 143 562 5.07e-70 248
Msa0455580 AT1G32180.1 25.240 313 222 5 417 726 660 963 1.50e-22 103
Msa0455580 AT1G32180.2 33.806 423 198 10 44 387 143 562 5.07e-70 248
Msa0455580 AT1G32180.2 25.240 313 222 5 417 726 660 963 1.50e-22 103
Msa0455580 AT5G44030.3 41.137 299 161 6 91 377 9 304 8.84e-69 241
Msa0455580 AT5G44030.3 32.063 315 183 9 417 719 446 741 1.44e-33 138
Msa0455580 AT3G03050.1 36.090 399 186 9 47 377 318 715 1.23e-68 245
Msa0455580 AT3G03050.1 26.814 317 216 8 417 729 825 1129 4.69e-26 115
Msa0455580 AT1G02730.1 35.749 414 190 10 37 377 333 743 1.17e-67 243
Msa0455580 AT1G02730.1 27.607 326 209 9 414 729 858 1166 1.58e-24 110
Msa0455580 AT5G16910.1 34.353 425 209 10 21 377 296 718 1.60e-66 239
Msa0455580 AT5G16910.1 26.498 317 217 8 417 729 825 1129 4.83e-25 112

Find 170 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTCTTTAGCATTATT+TGG 0.094569 3_3:+48571007 None:intergenic
ATCTCCAATGCTCACTTTAT+TGG 0.161855 3_3:-48566089 Msa0455580:CDS
TATGCCCACCTTGGTATATT+TGG 0.175535 3_3:-48568481 Msa0455580:CDS
ATTATTGGTGGTTCAATATC+TGG 0.182940 3_3:+48571223 None:intergenic
GAGAAGGAAATTATGGAATT+TGG 0.201435 3_3:-48566118 Msa0455580:CDS
CTTTGAAGTTATGTTGAAAT+TGG 0.202850 3_3:+48568442 None:intergenic
TACCAAAAGAAGATGGAAAA+TGG 0.207768 3_3:-48572198 Msa0455580:CDS
TGGTTACATTGTTACCTTAA+TGG 0.208686 3_3:+48570982 None:intergenic
CTTATTGTTACTATAATCTA+TGG 0.216698 3_3:-48566564 Msa0455580:CDS
TTTCAAAGTTCAGTCCTATT+TGG 0.238172 3_3:-48566624 Msa0455580:CDS
CCAACAAGAAAAGCTTTCTT+AGG 0.246266 3_3:-48566721 Msa0455580:CDS
GGGAAGGGTTGCCTGAAAAT+AGG 0.246274 3_3:+48572100 None:intergenic
AGGAAAAGGCCTTGATAAAT+AGG 0.247467 3_3:+48565926 None:intergenic
TGAAAATAGGGTTCCATCTA+AGG 0.252001 3_3:+48572113 None:intergenic
CAAACAATTCTCAATCTCTA+AGG 0.258363 3_3:-48568053 Msa0455580:CDS
AGTCCTATTTGGTACGCTTT+TGG 0.262148 3_3:-48566613 Msa0455580:CDS
TTATGTTGAACAAGTGATTC+TGG 0.278433 3_3:+48566679 None:intergenic
TGCCTTTGTGCAGGCTCCTC+AGG 0.278611 3_3:-48567986 Msa0455580:CDS
TTGTAGGAATTTGCTCCATT+TGG 0.281017 3_3:-48572240 Msa0455580:CDS
AAGATATGAGAAGGAAATTA+TGG 0.284586 3_3:-48566125 Msa0455580:CDS
TTCTCTTTCTCTTTGTTTGT+AGG 0.285077 3_3:-48572256 Msa0455580:CDS
AAATTCAGCTTTCATAATAT+CGG 0.302997 3_3:-48566176 Msa0455580:CDS
TTTAACCAAGGTAAGTAAAT+AGG 0.309957 3_3:+48565831 None:intergenic
ACATTGAATCTCTTGCAAAA+TGG 0.323733 3_3:+48571076 None:intergenic
GTGGATTTACATGGCTTTGA+TGG 0.323753 3_3:-48567753 Msa0455580:CDS
GGATGCACTTTGCTTCTTCA+TGG 0.325256 3_3:-48568031 Msa0455580:CDS
TTTGAAGTTATGTTGAAATT+GGG 0.331599 3_3:+48568443 None:intergenic
TGTAGGAATTTGCTCCATTT+GGG 0.331776 3_3:-48572239 Msa0455580:CDS
CTTCTTCATGGATGAAGAAA+AGG 0.332640 3_3:-48568019 Msa0455580:CDS
TCCTTCGTCAAGCCCTTAGA+TGG 0.335267 3_3:-48572126 Msa0455580:CDS
AAATAATGCTAAAGAGCTTT+TGG 0.339690 3_3:-48571005 Msa0455580:CDS
CTACAGATGGGACTACTATA+TGG 0.347725 3_3:-48566814 Msa0455580:intron
AAAGAGTACCAATGAATTCA+TGG 0.349547 3_3:+48568413 None:intergenic
GATTGCTTTGTGCTGAACTA+TGG 0.350824 3_3:-48572165 Msa0455580:CDS
ATTATTTGGGTAAGTGTCTA+AGG 0.351320 3_3:+48571021 None:intergenic
AGATATTGAACCACCAATAA+TGG 0.352515 3_3:-48571221 Msa0455580:CDS
TTAGGTGGGCCCATGTATAT+TGG 0.356630 3_3:-48567729 Msa0455580:CDS
AAAGCTCTTTAGCATTATTT+GGG 0.358201 3_3:+48571008 None:intergenic
AATCCAAAAGCGTACCAAAT+AGG 0.362728 3_3:+48566610 None:intergenic
TTACATGGCTTTGATGGATT+AGG 0.370668 3_3:-48567747 Msa0455580:CDS
TGGCATCAACAAAGGCAAAA+AGG 0.382009 3_3:+48566221 None:intergenic
AAGAAGATGGAAAATGGGTT+TGG 0.382244 3_3:-48572192 Msa0455580:CDS
AGTGATTCTGGCAAGGTTGT+TGG 0.384499 3_3:+48566691 None:intergenic
CTACTCGACTTTCCATATCT+TGG 0.397111 3_3:+48568787 None:intergenic
CTTTGTGCTGAACTATGGTT+TGG 0.397394 3_3:-48572160 Msa0455580:CDS
CTTCGGTACTTTACCCAACT+TGG 0.400012 3_3:+48568755 None:intergenic
ATAGAGAATGTACCAAGATA+TGG 0.403522 3_3:-48568799 Msa0455580:intron
TTAAGGAAGGTTGTGTTAAG+TGG 0.405939 3_3:-48566022 Msa0455580:CDS
GTGATCTATACAAGATTGAT+TGG 0.409206 3_3:-48567659 Msa0455580:CDS
AGTAACAATAAGACATTTGA+AGG 0.411909 3_3:+48566575 None:intergenic
CACACAAATATGTCCACTTT+GGG 0.417250 3_3:+48571256 None:intergenic
GGAAGGGTTGCCTGAAAATA+GGG 0.417513 3_3:+48572101 None:intergenic
GATGGAAAATGGGTTTGGAT+TGG 0.417771 3_3:-48572187 Msa0455580:CDS
ATAGATACTGCTTCATAGAA+AGG 0.419423 3_3:-48568532 Msa0455580:intron
GCTGTGTTGATCACCATTAT+TGG 0.419621 3_3:+48571208 None:intergenic
GTCTTGTTGGGATGTTGTTA+AGG 0.421269 3_3:-48566039 Msa0455580:CDS
ATCTTCCCTTATCTTTCCTT+AGG 0.425033 3_3:+48565906 None:intergenic
TGATTTGAGTATGCCTCCTT+CGG 0.425383 3_3:+48568738 None:intergenic
CATGGCTTTGATGGATTAGG+TGG 0.429241 3_3:-48567744 Msa0455580:CDS
AACTCAAGAATTAAGAAAGA+TGG 0.430861 3_3:-48572344 Msa0455580:exon
CCTTATCTTTCCTTAGGAAA+AGG 0.431312 3_3:+48565912 None:intergenic
TTTGAGACAAGGAGAGGGAA+GGG 0.431324 3_3:-48572298 Msa0455580:CDS
TGTTGGGATGTTGTTAAGGA+AGG 0.434007 3_3:-48566035 Msa0455580:CDS
TACCTTTCAGAGAGTCTTTG+TGG 0.440114 3_3:+48572079 None:intergenic
TTTCAACATAACTTCAAAGC+TGG 0.441371 3_3:-48568438 Msa0455580:CDS
ATCTCTACTGTGAAAGCAAC+CGG 0.449204 3_3:+48567704 None:intergenic
ATCAATATACCTATTTATCA+AGG 0.451343 3_3:-48565935 Msa0455580:CDS
GTAGTGGAGGATATAATAAC+AGG 0.452467 3_3:-48566787 Msa0455580:CDS
CTTCTAAATTTGCTAAGCAT+TGG 0.454514 3_3:-48571102 Msa0455580:CDS
ATTAAGAAAGATGGGGAAAG+AGG 0.455218 3_3:-48572335 Msa0455580:exon
TCAGAGAGTCTTTGTGGGAA+GGG 0.458120 3_3:+48572085 None:intergenic
AGCAAGTGTTACATTATTTG+AGG 0.461609 3_3:-48565999 Msa0455580:CDS
CAATAAGACATTTGAAGGCC+TGG 0.462143 3_3:+48566580 None:intergenic
AGGGTAGGAGGTACAATGAA+AGG 0.462869 3_3:-48566292 Msa0455580:CDS
AACAAACCCATCTTCATCTC+TGG 0.467241 3_3:+48568503 None:intergenic
TTGATTAGATTTCAAATCCA+TGG 0.468882 3_3:-48566375 Msa0455580:intron
ATGTAAGTAGACGGTTTGAG+AGG 0.470432 3_3:+48565696 None:intergenic
ACCAAAAGAAGATGGAAAAT+GGG 0.475593 3_3:-48572197 Msa0455580:CDS
ACTCAAGAATTAAGAAAGAT+GGG 0.477561 3_3:-48572343 Msa0455580:exon
TGTGTCCTATTTACTTACCT+TGG 0.478647 3_3:-48565836 Msa0455580:CDS
ACACACAAATATGTCCACTT+TGG 0.483106 3_3:+48571255 None:intergenic
GCCTTTGTGCAGGCTCCTCA+GGG 0.487427 3_3:-48567985 Msa0455580:CDS
GTAGAAAATGCATCCAAGTT+GGG 0.487538 3_3:-48568768 Msa0455580:CDS
CCTCTCCTTGTCTCAAACAA+TGG 0.489487 3_3:+48572304 None:intergenic
AAGGTCTTGAAATATGCATC+TGG 0.489539 3_3:+48571040 None:intergenic
AGCTGGAGCCATGAATTCAT+TGG 0.491316 3_3:-48568421 Msa0455580:intron
CATATGTAGGTGGATTTACA+TGG 0.491789 3_3:-48567762 Msa0455580:intron
GGAACAAGGGAATGCCTTTG+AGG 0.494561 3_3:+48566488 None:intergenic
GGGCCCATGTATATTGGAAC+CGG 0.500078 3_3:-48567723 Msa0455580:CDS
TTCAGAGAGTCTTTGTGGGA+AGG 0.500617 3_3:+48572084 None:intergenic
AGCTTTCATAATATCGGCTA+AGG 0.501083 3_3:-48566170 Msa0455580:CDS
ACATGAAATTGCCTTTGTGC+AGG 0.505115 3_3:-48567995 Msa0455580:CDS
CCTATGAGGAAAACACATCA+TGG 0.509066 3_3:-48567545 Msa0455580:CDS
ATGATGCAATAATACAAAGT+TGG 0.513377 3_3:+48566526 None:intergenic
ACTCACTCTATAAACCCAAA+TGG 0.520534 3_3:+48572225 None:intergenic
TTGAAGTTATGTTGAAATTG+GGG 0.520777 3_3:+48568444 None:intergenic
CCAACTATGACATATGCAAA+AGG 0.524828 3_3:+48566346 None:intergenic
CTTAGTCTGATCTATATCAA+TGG 0.526267 3_3:-48565671 Msa0455580:three_prime_UTR
TTCTTCATGGATGAAGAAAA+GGG 0.528326 3_3:-48568018 Msa0455580:CDS
ACCTTTCAGAGAGTCTTTGT+GGG 0.533357 3_3:+48572080 None:intergenic
AGTGGACATATTTGTGTGTA+CGG 0.534171 3_3:-48571251 Msa0455580:CDS
AGTAGAAAATGCATCCAAGT+TGG 0.534174 3_3:-48568769 Msa0455580:CDS
GATTTAACAGCAACAGACCT+TGG 0.535414 3_3:+48565881 None:intergenic
TCTTGCAAGTTGTACCTATG+AGG 0.538293 3_3:-48567559 Msa0455580:CDS
GTGGAATGAGTTAAGGATGT+GGG 0.538687 3_3:-48566266 Msa0455580:CDS
AGTTACATACCAAAAGAAGA+TGG 0.539631 3_3:-48572205 Msa0455580:CDS
TGTCATCAATGATTAGCAAT+GGG 0.542769 3_3:-48568110 Msa0455580:CDS
AAACACATCATGGGGAAAAG+AGG 0.543820 3_3:-48567535 Msa0455580:intron
ACTAGAGAAACAAGAGGTCA+TGG 0.546683 3_3:+48565726 None:intergenic
ATTAACATATTTACCTCATG+AGG 0.548024 3_3:+48567913 None:intergenic
AAACAATTCTCAATCTCTAA+GGG 0.548566 3_3:-48568052 Msa0455580:CDS
GTGTTGATCACCATTATTGG+TGG 0.548835 3_3:+48571211 None:intergenic
TTATTGTTACTATAATCTAT+GGG 0.549266 3_3:-48566563 Msa0455580:CDS
GCAACCGGTTCCAATATACA+TGG 0.550511 3_3:+48567719 None:intergenic
GAGGTACAATGAAAGGTTGG+TGG 0.555430 3_3:-48566285 Msa0455580:CDS
TACACACTAAGCTTCTCTGT+TGG 0.555790 3_3:+48571175 None:intergenic
GTGTATCTTTCAGATGATGC+TGG 0.557262 3_3:-48571157 Msa0455580:CDS
AGGCATTCCCTTGTTCCCAC+AGG 0.557490 3_3:-48566482 Msa0455580:intron
GACAATGCCAGAGATGAAGA+TGG 0.557521 3_3:-48568510 Msa0455580:CDS
CTATGAGGAAAACACATCAT+GGG 0.558232 3_3:-48567544 Msa0455580:CDS
GTAGCCAATAAAGTGAGCAT+TGG 0.558896 3_3:+48566085 None:intergenic
TGAGAACATGTTGCCCAAAG+TGG 0.561822 3_3:-48571269 Msa0455580:CDS
AAATATGCATCTGGTGACCT+AGG 0.562091 3_3:+48571049 None:intergenic
TGTAAGTAGACGGTTTGAGA+GGG 0.567614 3_3:+48565697 None:intergenic
GTGTCATCAATGATTAGCAA+TGG 0.569343 3_3:-48568111 Msa0455580:CDS
TAGGAGGTACAATGAAAGGT+TGG 0.569415 3_3:-48566288 Msa0455580:CDS
AAGGTTGGTGGAATGAGTTA+AGG 0.570742 3_3:-48566273 Msa0455580:CDS
GTTTGAGACAAGGAGAGGGA+AGG 0.575519 3_3:-48572299 Msa0455580:CDS
AAAGAATAAATGTGTGTATG+TGG 0.576029 3_3:+48572416 None:intergenic
ATGGCTTTGATGGATTAGGT+GGG 0.580768 3_3:-48567743 Msa0455580:CDS
TGGGTTTGTTATGCCCACCT+TGG 0.587789 3_3:-48568490 Msa0455580:CDS
CGAGCCAAATATACCAAGGT+GGG 0.599351 3_3:+48568477 None:intergenic
CACTTGTTCAACATAAGAGA+TGG 0.602865 3_3:-48566672 Msa0455580:CDS
ACAATGCCAGAGATGAAGAT+GGG 0.604837 3_3:-48568509 Msa0455580:CDS
CCTTCACTATATCTCCTCAA+AGG 0.606499 3_3:-48566502 Msa0455580:CDS
CACAGTAGAGATGCACTATG+TGG 0.607148 3_3:-48567693 Msa0455580:CDS
AAGTAGACGGTTTGAGAGGG+AGG 0.607343 3_3:+48565700 None:intergenic
GGTGGAATGAGTTAAGGATG+TGG 0.607586 3_3:-48566267 Msa0455580:CDS
TTTCATACCTGTGGGAACAA+GGG 0.609565 3_3:+48566475 None:intergenic
CATTGTTTGAGACAAGGAGA+GGG 0.612024 3_3:-48572303 Msa0455580:CDS
CCATTGTTTGAGACAAGGAG+AGG 0.612659 3_3:-48572304 Msa0455580:CDS
CTTCAACATGGCATCAACAA+AGG 0.613709 3_3:+48566213 None:intergenic
ACTACTATATGGTTGTGTAG+TGG 0.617723 3_3:-48566803 Msa0455580:CDS
ATTATCCATTGTTTGAGACA+AGG 0.617883 3_3:-48572309 Msa0455580:CDS
GAAAATAGGGTTCCATCTAA+GGG 0.618382 3_3:+48572114 None:intergenic
GACTAAGATATGTAAGTAGA+CGG 0.620701 3_3:+48565687 None:intergenic
TGTTTCACAAAGATATGAGA+AGG 0.620914 3_3:-48566134 Msa0455580:CDS
CTTTGAGGAGATATAGTGAA+GGG 0.621006 3_3:+48566503 None:intergenic
CAACATAAGAGATGGTCTGA+AGG 0.621250 3_3:-48566664 Msa0455580:CDS
ACTATATGGTTGTGTAGTGG+AGG 0.622506 3_3:-48566800 Msa0455580:CDS
TCCATCTAAGGGCTTGACGA+AGG 0.624315 3_3:+48572125 None:intergenic
CAAGTTGGGTAAAGTACCGA+AGG 0.626161 3_3:-48568754 Msa0455580:CDS
AGAGATTCAATGTTGAACCT+AGG 0.626199 3_3:-48571066 Msa0455580:CDS
TCCCACAAAGACTCTCTGAA+AGG 0.632973 3_3:-48572081 Msa0455580:intron
TATGCAAAAGGTATGAACCA+TGG 0.640500 3_3:+48566358 None:intergenic
TATGAGGAAAACACATCATG+GGG 0.644657 3_3:-48567543 Msa0455580:CDS
CCTTTGAGGAGATATAGTGA+AGG 0.650684 3_3:+48566502 None:intergenic
TTGAACAAGTGATTCTGGCA+AGG 0.652845 3_3:+48566684 None:intergenic
CTCAAGAATTAAGAAAGATG+GGG 0.653519 3_3:-48572342 Msa0455580:exon
CTCACGAGCCAAATATACCA+AGG 0.657691 3_3:+48568473 None:intergenic
GTTGGGTAAAGTACCGAAGG+AGG 0.662441 3_3:-48568751 Msa0455580:CDS
ACAAGGAAATAATTTAACCA+AGG 0.669816 3_3:+48565819 None:intergenic
AAGATAAGGGAAGATTGCCA+AGG 0.672929 3_3:-48565898 Msa0455580:CDS
AGGCATACTAGAGAAACAAG+AGG 0.678963 3_3:+48565720 None:intergenic
CAACCGGTTCCAATATACAT+GGG 0.683720 3_3:+48567720 None:intergenic
ACGAGCCAAATATACCAAGG+TGG 0.686997 3_3:+48568476 None:intergenic
GTACTTGAAGAATTGCGTCA+TGG 0.688114 3_3:+48568673 None:intergenic
GTGATATTGGCAATGCCCTG+AGG 0.690995 3_3:+48567970 None:intergenic
GCCCTGAGGAGCCTGCACAA+AGG 0.697500 3_3:+48567984 None:intergenic
GGAGGCATACTCAAATCACA+AGG 0.701115 3_3:-48568733 Msa0455580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATTAAATAAAATA+AGG + chr3_3:48566371-48566390 None:intergenic 0.0%
!!! TTATTTTTTTATTAAATTTT+AGG - chr3_3:48567433-48567452 Msa0455580:intron 0.0%
!! AAAAAAAAAATTAAAAAAAA+TGG - chr3_3:48570238-48570257 Msa0455580:intron 0.0%
!!! TTTTTGACAAAAATAAAATA+AGG + chr3_3:48566344-48566363 None:intergenic 10.0%
!!! ATAGTTAATTAAGTTTTTAA+AGG - chr3_3:48566490-48566509 Msa0455580:CDS 10.0%
!!! TAGTTAATTAAGTTTTTAAA+GGG - chr3_3:48566491-48566510 Msa0455580:CDS 10.0%
!!! ATATTTTTAAGTGATTTTTA+TGG + chr3_3:48567249-48567268 None:intergenic 10.0%
!!! AATCTATTTTTCTAAAAATA+AGG + chr3_3:48567301-48567320 None:intergenic 10.0%
!!! ATTTTTAGAAAAATAGATTT+CGG - chr3_3:48567302-48567321 Msa0455580:intron 10.0%
!!! ATTTTTTTTTGTTAACTTTT+AGG - chr3_3:48567709-48567728 Msa0455580:CDS 10.0%
!! AATAAAATTATCTTTAATGA+TGG - chr3_3:48568033-48568052 Msa0455580:CDS 10.0%
!!! AATTTATCTTCAATATTTTA+GGG + chr3_3:48568735-48568754 None:intergenic 10.0%
!!! AAATTTATCTTCAATATTTT+AGG + chr3_3:48568736-48568755 None:intergenic 10.0%
!!! GTTATATTTTTTAAATGATA+AGG - chr3_3:48568802-48568821 Msa0455580:intron 10.0%
!!! AAATAATGCTATTAATTTTT+TGG - chr3_3:48568842-48568861 Msa0455580:intron 10.0%
!! AAAATAAAATATTTAGTACA+AGG + chr3_3:48569173-48569192 None:intergenic 10.0%
!!! ATTAATTTTTTTTCTTTTGA+AGG - chr3_3:48569837-48569856 Msa0455580:intron 10.0%
!!! TATAACCAATAAATTTTTTT+GGG + chr3_3:48570973-48570992 None:intergenic 10.0%
!! ATGTTAATTAAATATTGCTA+TGG + chr3_3:48566080-48566099 None:intergenic 15.0%
!! CAAAAAAAGAAAAAAGAAAT+AGG + chr3_3:48566223-48566242 None:intergenic 15.0%
!!! CTATTTCTTTTTTCTTTTTT+TGG - chr3_3:48566221-48566240 Msa0455580:CDS 15.0%
!!! AAATTTTAGGTTAATTTGAT+AGG - chr3_3:48567446-48567465 Msa0455580:intron 15.0%
!!! TTTAATTTGTTCAATAACAA+CGG - chr3_3:48567483-48567502 Msa0455580:intron 15.0%
!!! TTTAATTTGTTCAATAACAA+CGG - chr3_3:48567483-48567502 Msa0455580:intron 15.0%
!!! CAAATAAGATTTTTTTTTTG+TGG - chr3_3:48567939-48567958 Msa0455580:CDS 15.0%
!!! TTAAGACAATTTTCTTTTAA+GGG + chr3_3:48568598-48568617 None:intergenic 15.0%
!!! TTTAAGACAATTTTCTTTTA+AGG + chr3_3:48568599-48568618 None:intergenic 15.0%
!! AATAAAACAGTTTCAAATAA+TGG + chr3_3:48569272-48569291 None:intergenic 15.0%
!! AAATTCATATGATAATTAAG+TGG - chr3_3:48569527-48569546 Msa0455580:intron 15.0%
!!! AGTTTAAAATATGATAACTT+TGG - chr3_3:48570662-48570681 Msa0455580:intron 15.0%
!!! GTATAACCAATAAATTTTTT+TGG + chr3_3:48570974-48570993 None:intergenic 15.0%
!! TTATTGTTACTATAATCTAT+GGG - chr3_3:48571536-48571555 Msa0455580:intron 15.0%
!!! GTAATTTGTTATTTTAATAG+TGG - chr3_3:48572339-48572358 Msa0455580:exon 15.0%
!!! AAAAAAGCATATATGTTTGT+AGG + chr3_3:48566272-48566291 None:intergenic 20.0%
!!! AACATATATGCTTTTTTTAG+AGG - chr3_3:48566275-48566294 Msa0455580:CDS 20.0%
!!! ATTTTGTAGTGAATTGATAT+TGG - chr3_3:48566565-48566584 Msa0455580:CDS 20.0%
!!! ATCATTATTGAGAAGTATTT+TGG - chr3_3:48566774-48566793 Msa0455580:CDS 20.0%
!!! CTATTTTTCTAAAAATAAGG+AGG + chr3_3:48567298-48567317 None:intergenic 20.0%
!!! TAAGATTTTTTTTTTGTGGT+CGG - chr3_3:48567943-48567962 Msa0455580:CDS 20.0%
!! GTAAATTTAATTCAGTTGAT+AGG + chr3_3:48567995-48568014 None:intergenic 20.0%
!! TATTAGTAATATCAACCATT+TGG - chr3_3:48568098-48568117 Msa0455580:CDS 20.0%
!!! CTTTTGCATTTAAAAAAGAT+GGG + chr3_3:48568144-48568163 None:intergenic 20.0%
!!! ACTTTTGCATTTAAAAAAGA+TGG + chr3_3:48568145-48568164 None:intergenic 20.0%
!! TACAAAATATTTGAAGAAGT+GGG + chr3_3:48568244-48568263 None:intergenic 20.0%
!!! TTTTAATTAGTGATCTTTGT+GGG + chr3_3:48568511-48568530 None:intergenic 20.0%
!!! TACACTTGTTTTTTGTTTTA+CGG + chr3_3:48569049-48569068 None:intergenic 20.0%
!! ATATTTAGTACAAGGTAATT+AGG + chr3_3:48569165-48569184 None:intergenic 20.0%
!! AAATTCAATCAGAAAAGAAA+AGG + chr3_3:48569456-48569475 None:intergenic 20.0%
!!! TTTTTTTATCAAGAATTCAC+TGG - chr3_3:48569717-48569736 Msa0455580:intron 20.0%
!!! TCGTGGATTTTAATTTAATT+AGG - chr3_3:48569773-48569792 Msa0455580:intron 20.0%
!! ATGCATTCAAAAATTAAACT+TGG + chr3_3:48569800-48569819 None:intergenic 20.0%
!! TATGTGTATGTATTAATTGT+TGG - chr3_3:48569864-48569883 Msa0455580:intron 20.0%
!! TGTAATTATGTATTAATCGT+TGG - chr3_3:48569947-48569966 Msa0455580:intron 20.0%
!!! TATGTCATTTTTTGTGATAT+TGG + chr3_3:48570145-48570164 None:intergenic 20.0%
!! ATCACAAAAAATGACATATA+TGG - chr3_3:48570147-48570166 Msa0455580:intron 20.0%
!!! AAAAAAAAAAACTAGGGTTT+TGG - chr3_3:48570636-48570655 Msa0455580:intron 20.0%
!!! AATATGATAACTTTGGTTTT+TGG - chr3_3:48570669-48570688 Msa0455580:intron 20.0%
!!! ACAAAGTTTTTCCTTTATTT+TGG - chr3_3:48570694-48570713 Msa0455580:intron 20.0%
!!! ATTTCTTTTTTGAAATAGAG+AGG + chr3_3:48570752-48570771 None:intergenic 20.0%
!! CTATTTCAAAAAAGAAATAG+AGG - chr3_3:48570754-48570773 Msa0455580:intron 20.0%
!!! GATAGTGCATTAAATATTTT+TGG - chr3_3:48570810-48570829 Msa0455580:intron 20.0%
!! TTCTACCCAAAAAAATTTAT+TGG - chr3_3:48570965-48570984 Msa0455580:intron 20.0%
!! CTTATTGTTACTATAATCTA+TGG - chr3_3:48571535-48571554 Msa0455580:intron 20.0%
!! AAATTCAGCTTTCATAATAT+CGG - chr3_3:48571923-48571942 Msa0455580:intron 20.0%
!! ATCAATATACCTATTTATCA+AGG - chr3_3:48572164-48572183 Msa0455580:CDS 20.0%
! AAAGAATAAATGTGTGTATG+TGG + chr3_3:48565686-48565705 None:intergenic 25.0%
! AACTCAAGAATTAAGAAAGA+TGG - chr3_3:48565755-48565774 Msa0455580:three_prime_UTR 25.0%
! ACTCAAGAATTAAGAAAGAT+GGG - chr3_3:48565756-48565775 Msa0455580:three_prime_UTR 25.0%
!!! AACTATGGTTTGGTTTTTAT+TGG - chr3_3:48565949-48565968 Msa0455580:CDS 25.0%
! ATAAAATAAGGATGTATTGC+TGG + chr3_3:48566332-48566351 None:intergenic 25.0%
! TCTTTCATTTGAAAACTAGA+GGG - chr3_3:48566637-48566656 Msa0455580:CDS 25.0%
! AAAGCTCTTTAGCATTATTT+GGG + chr3_3:48567094-48567113 None:intergenic 25.0%
! AAAAGCTCTTTAGCATTATT+TGG + chr3_3:48567095-48567114 None:intergenic 25.0%
!! AAATAATGCTAAAGAGCTTT+TGG - chr3_3:48567094-48567113 Msa0455580:intron 25.0%
!! TTACATATTTAGAGCAAAGT+TGG + chr3_3:48567140-48567159 None:intergenic 25.0%
!! AACTTTGCTCTAAATATGTA+AGG - chr3_3:48567139-48567158 Msa0455580:intron 25.0%
!! ACTTTGCTCTAAATATGTAA+GGG - chr3_3:48567140-48567159 Msa0455580:intron 25.0%
!!! AAGATTTTTTTTTTGTGGTC+GGG - chr3_3:48567944-48567963 Msa0455580:CDS 25.0%
! ACAAAATATTTGAAGAAGTG+GGG + chr3_3:48568243-48568262 None:intergenic 25.0%
! CTACAAAATATTTGAAGAAG+TGG + chr3_3:48568245-48568264 None:intergenic 25.0%
!!! TTTTGATTGGTCAAAAACAA+TGG + chr3_3:48568366-48568385 None:intergenic 25.0%
!!! TCTTTTTTCTCACTTTTGAT+TGG + chr3_3:48568379-48568398 None:intergenic 25.0%
! TTTAATTAGTGATCTTTGTG+GGG + chr3_3:48568510-48568529 None:intergenic 25.0%
!!! GTTTTAATTAGTGATCTTTG+TGG + chr3_3:48568512-48568531 None:intergenic 25.0%
! TTCTTTAAACGCATTGTTTA+AGG - chr3_3:48568570-48568589 Msa0455580:intron 25.0%
!!! ACACTTGTTTTTTGTTTTAC+GGG + chr3_3:48569048-48569067 None:intergenic 25.0%
! TGTTTGCAAATCAATTTCAT+AGG + chr3_3:48569114-48569133 None:intergenic 25.0%
!!! AAGATATTTTAAACTACGTG+AGG + chr3_3:48569479-48569498 None:intergenic 25.0%
! TAAAATCCACGATCAAATAT+AGG + chr3_3:48569765-48569784 None:intergenic 25.0%
! AAACAATTCTCAATCTCTAA+GGG - chr3_3:48570047-48570066 Msa0455580:intron 25.0%
! ACAAAAAATGACATATATGG+TGG - chr3_3:48570150-48570169 Msa0455580:intron 25.0%
! ATTAACATATTTACCTCATG+AGG + chr3_3:48570189-48570208 None:intergenic 25.0%
! GTTCAAAGTTTAGAAACAAT+TGG + chr3_3:48570316-48570335 None:intergenic 25.0%
! TAAACTTTGAACACATATGT+AGG - chr3_3:48570324-48570343 Msa0455580:intron 25.0%
! GAATAGAATGACCAAAATAA+AGG + chr3_3:48570708-48570727 None:intergenic 25.0%
! TGATAAGAAAAATGTGCAAA+AGG - chr3_3:48570785-48570804 Msa0455580:intron 25.0%
! ATGACACTTTGTAACTAATA+GGG + chr3_3:48570917-48570936 None:intergenic 25.0%
! AATGACACTTTGTAACTAAT+AGG + chr3_3:48570918-48570937 None:intergenic 25.0%
! TCATTGCAACTATTGAATAT+TGG - chr3_3:48570933-48570952 Msa0455580:intron 25.0%
! TTGGTTATACAATATGTGTT+TGG - chr3_3:48570984-48571003 Msa0455580:intron 25.0%
! ATAATTGTCATGCAGTTTAA+TGG - chr3_3:48571045-48571064 Msa0455580:CDS 25.0%
! GTTTACTACATATAAATGTG+TGG - chr3_3:48571141-48571160 Msa0455580:CDS 25.0%
!! TTCTCTTATGATAGTGAATT+AGG - chr3_3:48571164-48571183 Msa0455580:CDS 25.0%
!! GGATTATCTATTTTATGCAA+AGG - chr3_3:48571333-48571352 Msa0455580:intron 25.0%
!! TATCTATTTTATGCAAAGGA+TGG - chr3_3:48571337-48571356 Msa0455580:intron 25.0%
! AGTAACAATAAGACATTTGA+AGG + chr3_3:48571527-48571546 None:intergenic 25.0%
! ATGATGCAATAATACAAAGT+TGG + chr3_3:48571576-48571595 None:intergenic 25.0%
! TTGATTAGATTTCAAATCCA+TGG - chr3_3:48571724-48571743 Msa0455580:intron 25.0%
! AAATCCAAAAAACTTCAACA+TGG + chr3_3:48571901-48571920 None:intergenic 25.0%
! AAGATATGAGAAGGAAATTA+TGG - chr3_3:48571974-48571993 Msa0455580:intron 25.0%
!! TTATTGCAAGTTTTACTATG+TGG - chr3_3:48572128-48572147 Msa0455580:CDS 25.0%
!! TATTGCAAGTTTTACTATGT+GGG - chr3_3:48572129-48572148 Msa0455580:CDS 25.0%
! TTTAACCAAGGTAAGTAAAT+AGG + chr3_3:48572271-48572290 None:intergenic 25.0%
! ACAAGGAAATAATTTAACCA+AGG + chr3_3:48572283-48572302 None:intergenic 25.0%
! AGTAAAACTAAAAAGTGACA+AGG + chr3_3:48572300-48572319 None:intergenic 25.0%
TCATTGAGTTCATATACCAT+AGG - chr3_3:48565725-48565744 Msa0455580:three_prime_UTR 30.0%
CATTGAGTTCATATACCATA+GGG - chr3_3:48565726-48565745 Msa0455580:three_prime_UTR 30.0%
CTCAAGAATTAAGAAAGATG+GGG - chr3_3:48565757-48565776 Msa0455580:three_prime_UTR 30.0%
! ATTATCCATTGTTTGAGACA+AGG - chr3_3:48565790-48565809 Msa0455580:three_prime_UTR 30.0%
! TTCTCTTTCTCTTTGTTTGT+AGG - chr3_3:48565843-48565862 Msa0455580:CDS 30.0%
AGTTACATACCAAAAGAAGA+TGG - chr3_3:48565894-48565913 Msa0455580:CDS 30.0%
TACCAAAAGAAGATGGAAAA+TGG - chr3_3:48565901-48565920 Msa0455580:CDS 30.0%
ACCAAAAGAAGATGGAAAAT+GGG - chr3_3:48565902-48565921 Msa0455580:CDS 30.0%
GTTTGTAGGTGAAAAGAAAT+AGG + chr3_3:48566258-48566277 None:intergenic 30.0%
!! TTTTTAAAGGGCAAATCGAT+TGG - chr3_3:48566503-48566522 Msa0455580:CDS 30.0%
TGTAGTGAATTGATATTGGA+TGG - chr3_3:48566569-48566588 Msa0455580:CDS 30.0%
AGAGGAAGTAAAATTTGACT+GGG + chr3_3:48566620-48566639 None:intergenic 30.0%
AAGAGGAAGTAAAATTTGAC+TGG + chr3_3:48566621-48566640 None:intergenic 30.0%
!!! CTCTAGTTTTCAAATGAAAG+AGG + chr3_3:48566638-48566657 None:intergenic 30.0%
CTCTTTCATTTGAAAACTAG+AGG - chr3_3:48566636-48566655 Msa0455580:CDS 30.0%
! ATTATTGGTGGTTCAATATC+TGG + chr3_3:48566879-48566898 None:intergenic 30.0%
AGATATTGAACCACCAATAA+TGG - chr3_3:48566878-48566897 Msa0455580:intron 30.0%
! TACATTTTATGCTCTCTTAG+AGG - chr3_3:48566974-48566993 Msa0455580:intron 30.0%
!! CTTCTAAATTTGCTAAGCAT+TGG - chr3_3:48566997-48567016 Msa0455580:intron 30.0%
ACATTGAATCTCTTGCAAAA+TGG + chr3_3:48567026-48567045 None:intergenic 30.0%
ATTATTTGGGTAAGTGTCTA+AGG + chr3_3:48567081-48567100 None:intergenic 30.0%
TGGTTACATTGTTACCTTAA+TGG + chr3_3:48567120-48567139 None:intergenic 30.0%
!!! AGATTTTTTTTTTGTGGTCG+GGG - chr3_3:48567945-48567964 Msa0455580:CDS 30.0%
ATATTCTGTCTTGATCCAAA+TGG + chr3_3:48568116-48568135 None:intergenic 30.0%
TTGGATCAAGACAGAATATA+AGG - chr3_3:48568117-48568136 Msa0455580:CDS 30.0%
GTACCAAAAGTTGTCTAAAA+TGG - chr3_3:48568403-48568422 Msa0455580:intron 30.0%
! CAACCATTTTAGACAACTTT+TGG + chr3_3:48568409-48568428 None:intergenic 30.0%
AACCACAATTGTTGTATACA+GGG + chr3_3:48569019-48569038 None:intergenic 30.0%
ATAGAGAATGTACCAAGATA+TGG - chr3_3:48569300-48569319 Msa0455580:intron 30.0%
! ATCACAAGGAATTTTCTCAA+TGG - chr3_3:48569380-48569399 Msa0455580:intron 30.0%
! TCACAAGGAATTTTCTCAAT+GGG - chr3_3:48569381-48569400 Msa0455580:intron 30.0%
ATAGATACTGCTTCATAGAA+AGG - chr3_3:48569567-48569586 Msa0455580:intron 30.0%
!! AAAGAGTACCAATGAATTCA+TGG + chr3_3:48569689-48569708 None:intergenic 30.0%
TGTCATCAATGATTAGCAAT+GGG - chr3_3:48569989-48570008 Msa0455580:intron 30.0%
CAAACAATTCTCAATCTCTA+AGG - chr3_3:48570046-48570065 Msa0455580:intron 30.0%
TTCTTCATGGATGAAGAAAA+GGG - chr3_3:48570081-48570100 Msa0455580:intron 30.0%
! TTATTTTCGTATACCTCATG+AGG - chr3_3:48570173-48570192 Msa0455580:intron 30.0%
GTGATCTATACAAGATTGAT+TGG - chr3_3:48570440-48570459 Msa0455580:intron 30.0%
CGTACTTATTTAAACCTTTG+TGG - chr3_3:48570834-48570853 Msa0455580:intron 30.0%
TGACACTTTGTAACTAATAG+GGG + chr3_3:48570916-48570935 None:intergenic 30.0%
!! ATCCTTTTTGTTATACGTCA+AGG - chr3_3:48571187-48571206 Msa0455580:CDS 30.0%
! TGAATACTTTTCACTACAGA+TGG - chr3_3:48571272-48571291 Msa0455580:CDS 30.0%
! GAATACTTTTCACTACAGAT+GGG - chr3_3:48571273-48571292 Msa0455580:CDS 30.0%
TTATGTTGAACAAGTGATTC+TGG + chr3_3:48571423-48571442 None:intergenic 30.0%
TTTCAAAGTTCAGTCCTATT+TGG - chr3_3:48571475-48571494 Msa0455580:intron 30.0%
! AGTAACATTTTCATACCTGT+GGG + chr3_3:48571635-48571654 None:intergenic 30.0%
! TAGTAACATTTTCATACCTG+TGG + chr3_3:48571636-48571655 None:intergenic 30.0%
GTATGAAAATGTTACTACCT+CGG - chr3_3:48571639-48571658 Msa0455580:intron 30.0%
!! ACTGTTTGTTAGAGTTTTTG+AGG - chr3_3:48571787-48571806 Msa0455580:intron 30.0%
!! CTGTTTGTTAGAGTTTTTGA+GGG - chr3_3:48571788-48571807 Msa0455580:intron 30.0%
TGTTTCACAAAGATATGAGA+AGG - chr3_3:48571965-48571984 Msa0455580:intron 30.0%
GAGAAGGAAATTATGGAATT+TGG - chr3_3:48571981-48572000 Msa0455580:intron 30.0%
!! TGAATGTGTTTTGTCTTGTT+GGG - chr3_3:48572048-48572067 Msa0455580:intron 30.0%
AGCAAGTGTTACATTATTTG+AGG - chr3_3:48572100-48572119 Msa0455580:CDS 30.0%
! ATTGCAAGTTTTACTATGTG+GGG - chr3_3:48572130-48572149 Msa0455580:CDS 30.0%
! CTTTTCCTAAGGAAAGATAA+GGG - chr3_3:48572188-48572207 Msa0455580:CDS 30.0%
GACTAAGATATGTAAGTAGA+CGG + chr3_3:48572415-48572434 None:intergenic 30.0%
CTTAGTCTGATCTATATCAA+TGG - chr3_3:48572428-48572447 Msa0455580:five_prime_UTR 30.0%
ATTAAGAAAGATGGGGAAAG+AGG - chr3_3:48565764-48565783 Msa0455580:three_prime_UTR 35.0%
! TTGTAGGAATTTGCTCCATT+TGG - chr3_3:48565859-48565878 Msa0455580:CDS 35.0%
! TGTAGGAATTTGCTCCATTT+GGG - chr3_3:48565860-48565879 Msa0455580:CDS 35.0%
ACTCACTCTATAAACCCAAA+TGG + chr3_3:48565877-48565896 None:intergenic 35.0%
! ACCCATTTTCCATCTTCTTT+TGG + chr3_3:48565906-48565925 None:intergenic 35.0%
! AAGAAGATGGAAAATGGGTT+TGG - chr3_3:48565907-48565926 Msa0455580:CDS 35.0%
GAAAATAGGGTTCCATCTAA+GGG + chr3_3:48565988-48566007 None:intergenic 35.0%
TGAAAATAGGGTTCCATCTA+AGG + chr3_3:48565989-48566008 None:intergenic 35.0%
! TTAGATGGAACCCTATTTTC+AGG - chr3_3:48565988-48566007 Msa0455580:CDS 35.0%
GGCAAATCGATTGGAAATTT+GGG - chr3_3:48566512-48566531 Msa0455580:CDS 35.0%
GAGGAAGTAAAATTTGACTG+GGG + chr3_3:48566619-48566638 None:intergenic 35.0%
CACACAAATATGTCCACTTT+GGG + chr3_3:48566846-48566865 None:intergenic 35.0%
ACACACAAATATGTCCACTT+TGG + chr3_3:48566847-48566866 None:intergenic 35.0%
AGTGGACATATTTGTGTGTA+CGG - chr3_3:48566848-48566867 Msa0455580:intron 35.0%
AGAGATTCAATGTTGAACCT+AGG - chr3_3:48567033-48567052 Msa0455580:intron 35.0%
AAGGTCTTGAAATATGCATC+TGG + chr3_3:48567062-48567081 None:intergenic 35.0%
! TAAAGAGCTTTTGGCCATTA+AGG - chr3_3:48567103-48567122 Msa0455580:intron 35.0%
AAGCTAATCCTAAATGCCAA+CGG - chr3_3:48567328-48567347 Msa0455580:intron 35.0%
AATCGCAAATCAGTTCAATG+AGG - chr3_3:48567533-48567552 Msa0455580:intron 35.0%
TCTAGTCTCTTGTACTACAT+TGG + chr3_3:48567844-48567863 None:intergenic 35.0%
TGTAGTACAAGAGACTAGAA+TGG - chr3_3:48567845-48567864 Msa0455580:intron 35.0%
TTCAGCTATAATTCGACCAT+TGG + chr3_3:48567887-48567906 None:intergenic 35.0%
AAGTGAAAATTTGTCACGAG+AGG - chr3_3:48568173-48568192 Msa0455580:intron 35.0%
CAAAGCAAGATTTGAAGAGA+GGG + chr3_3:48568486-48568505 None:intergenic 35.0%
TCAAAGCAAGATTTGAAGAG+AGG + chr3_3:48568487-48568506 None:intergenic 35.0%
AATTTCAACTTGTGAGGTCA+AGG + chr3_3:48568985-48569004 None:intergenic 35.0%
! ACCTCACAAGTTGAAATTTC+TGG - chr3_3:48568987-48569006 Msa0455580:intron 35.0%
TCCAGAAATTTCAACTTGTG+AGG + chr3_3:48568991-48569010 None:intergenic 35.0%
ACAATTGTTGTATACAGGGA+CGG + chr3_3:48569015-48569034 None:intergenic 35.0%
GAACCACAATTGTTGTATAC+AGG + chr3_3:48569020-48569039 None:intergenic 35.0%
AGTAGAAAATGCATCCAAGT+TGG - chr3_3:48569330-48569349 Msa0455580:intron 35.0%
GTAGAAAATGCATCCAAGTT+GGG - chr3_3:48569331-48569350 Msa0455580:intron 35.0%
! CACAAGGAATTTTCTCAATG+GGG - chr3_3:48569382-48569401 Msa0455580:intron 35.0%
ACTAAGCCTATATTTGATCG+TGG - chr3_3:48569756-48569775 Msa0455580:intron 35.0%
GTGTCATCAATGATTAGCAA+TGG - chr3_3:48569988-48570007 Msa0455580:intron 35.0%
CTTCTTCATGGATGAAGAAA+AGG - chr3_3:48570080-48570099 Msa0455580:intron 35.0%
TGGTGTAAGTAAGCTACTAT+TGG + chr3_3:48570296-48570315 None:intergenic 35.0%
ACTTTGAACACATATGTAGG+TGG - chr3_3:48570327-48570346 Msa0455580:intron 35.0%
! CATATGTAGGTGGATTTACA+TGG - chr3_3:48570337-48570356 Msa0455580:intron 35.0%
!! TTACATGGCTTTGATGGATT+AGG - chr3_3:48570352-48570371 Msa0455580:intron 35.0%
CTATGAGGAAAACACATCAT+GGG - chr3_3:48570555-48570574 Msa0455580:intron 35.0%
TATGAGGAAAACACATCATG+GGG - chr3_3:48570556-48570575 Msa0455580:intron 35.0%
TTGAAGAGAAAGAACCACAA+AGG + chr3_3:48570851-48570870 None:intergenic 35.0%
ACTGCATGACAATTATTGTG+AGG + chr3_3:48571041-48571060 None:intergenic 35.0%
ATGCAGTTTAATGGCAGATA+TGG - chr3_3:48571054-48571073 Msa0455580:CDS 35.0%
CTCCTTGACGTATAACAAAA+AGG + chr3_3:48571192-48571211 None:intergenic 35.0%
ACTACTATATGGTTGTGTAG+TGG - chr3_3:48571296-48571315 Msa0455580:intron 35.0%
! GTAGTGGAGGATATAATAAC+AGG - chr3_3:48571312-48571331 Msa0455580:intron 35.0%
! CCTAAGAAAGCTTTTCTTGT+TGG + chr3_3:48571381-48571400 None:intergenic 35.0%
CCAACAAGAAAAGCTTTCTT+AGG - chr3_3:48571378-48571397 Msa0455580:intron 35.0%
CACTTGTTCAACATAAGAGA+TGG - chr3_3:48571427-48571446 Msa0455580:intron 35.0%
! AATCCAAAAGCGTACCAAAT+AGG + chr3_3:48571492-48571511 None:intergenic 35.0%
! CTTTGAGGAGATATAGTGAA+GGG + chr3_3:48571599-48571618 None:intergenic 35.0%
!!! TAGTTTTAAAATGCAGTCCG+AGG + chr3_3:48571659-48571678 None:intergenic 35.0%
! TATGCAAAAGGTATGAACCA+TGG + chr3_3:48571744-48571763 None:intergenic 35.0%
CCAACTATGACATATGCAAA+AGG + chr3_3:48571756-48571775 None:intergenic 35.0%
! CCTTTTGCATATGTCATAGT+TGG - chr3_3:48571753-48571772 Msa0455580:intron 35.0%
!! TTGTTAGAGTTTTTGAGGGT+AGG - chr3_3:48571792-48571811 Msa0455580:intron 35.0%
!!! GATGCCATGTTGAAGTTTTT+TGG - chr3_3:48571894-48571913 Msa0455580:intron 35.0%
! AGCTTTCATAATATCGGCTA+AGG - chr3_3:48571929-48571948 Msa0455580:intron 35.0%
ATCTCCAATGCTCACTTTAT+TGG - chr3_3:48572010-48572029 Msa0455580:intron 35.0%
! CTGAATGTGTTTTGTCTTGT+TGG - chr3_3:48572047-48572066 Msa0455580:intron 35.0%
TTAAGGAAGGTTGTGTTAAG+TGG - chr3_3:48572077-48572096 Msa0455580:intron 35.0%
! AGTTTTACTATGTGGGGTTT+TGG - chr3_3:48572136-48572155 Msa0455580:CDS 35.0%
AGGAAAAGGCCTTGATAAAT+AGG + chr3_3:48572176-48572195 None:intergenic 35.0%
! TTTATCAAGGCCTTTTCCTA+AGG - chr3_3:48572177-48572196 Msa0455580:CDS 35.0%
CCTTATCTTTCCTTAGGAAA+AGG + chr3_3:48572190-48572209 None:intergenic 35.0%
! CCTTTTCCTAAGGAAAGATA+AGG - chr3_3:48572187-48572206 Msa0455580:CDS 35.0%
ATCTTCCCTTATCTTTCCTT+AGG + chr3_3:48572196-48572215 None:intergenic 35.0%
TGTGTCCTATTTACTTACCT+TGG - chr3_3:48572263-48572282 Msa0455580:CDS 35.0%
! TCTTGAGTTGTGATTCCCTA+TGG + chr3_3:48565744-48565763 None:intergenic 40.0%
! CATTGTTTGAGACAAGGAGA+GGG - chr3_3:48565796-48565815 Msa0455580:three_prime_UTR 40.0%
! GATGGAAAATGGGTTTGGAT+TGG - chr3_3:48565912-48565931 Msa0455580:CDS 40.0%
GATTGCTTTGTGCTGAACTA+TGG - chr3_3:48565934-48565953 Msa0455580:CDS 40.0%
CTTTGTGCTGAACTATGGTT+TGG - chr3_3:48565939-48565958 Msa0455580:CDS 40.0%
ACCTTTCAGAGAGTCTTTGT+GGG + chr3_3:48566022-48566041 None:intergenic 40.0%
TACCTTTCAGAGAGTCTTTG+TGG + chr3_3:48566023-48566042 None:intergenic 40.0%
GATGTATTGCTGGTGTTTGT+CGG + chr3_3:48566322-48566341 None:intergenic 40.0%
GGGCAAATCGATTGGAAATT+TGG - chr3_3:48566511-48566530 Msa0455580:CDS 40.0%
! GTGTTGATCACCATTATTGG+TGG + chr3_3:48566891-48566910 None:intergenic 40.0%
! GCTGTGTTGATCACCATTAT+TGG + chr3_3:48566894-48566913 None:intergenic 40.0%
TACACACTAAGCTTCTCTGT+TGG + chr3_3:48566927-48566946 None:intergenic 40.0%
GTGTATCTTTCAGATGATGC+TGG - chr3_3:48566942-48566961 Msa0455580:intron 40.0%
AAATATGCATCTGGTGACCT+AGG + chr3_3:48567053-48567072 None:intergenic 40.0%
! GATTTTCACCGTTGGCATTT+AGG + chr3_3:48567339-48567358 None:intergenic 40.0%
!! ATTGAGCTGATTTTCACCGT+TGG + chr3_3:48567347-48567366 None:intergenic 40.0%
CTAAGAGCTCACCTTTAATG+AGG - chr3_3:48567373-48567392 Msa0455580:intron 40.0%
AAATCAGTTCAATGAGGAGG+AGG - chr3_3:48567539-48567558 Msa0455580:CDS 40.0%
AATCAGTTCAATGAGGAGGA+GGG - chr3_3:48567540-48567559 Msa0455580:CDS 40.0%
AATCGCAAATCAGCTCAATG+AGG - chr3_3:48567617-48567636 Msa0455580:CDS 40.0%
GACTAGAATGGCACAATATG+CGG - chr3_3:48567857-48567876 Msa0455580:intron 40.0%
ACGTACACAGAAATGACACA+TGG - chr3_3:48568773-48568792 Msa0455580:CDS 40.0%
GTCCCTGTATACAACAATTG+TGG - chr3_3:48569014-48569033 Msa0455580:intron 40.0%
CTACTCGACTTTCCATATCT+TGG + chr3_3:48569315-48569334 None:intergenic 40.0%
TGATTTGAGTATGCCTCCTT+CGG + chr3_3:48569364-48569383 None:intergenic 40.0%
GTACTTGAAGAATTGCGTCA+TGG + chr3_3:48569429-48569448 None:intergenic 40.0%
ACAATGCCAGAGATGAAGAT+GGG - chr3_3:48569590-48569609 Msa0455580:intron 40.0%
AACAAACCCATCTTCATCTC+TGG + chr3_3:48569599-48569618 None:intergenic 40.0%
TATGCCCACCTTGGTATATT+TGG - chr3_3:48569618-48569637 Msa0455580:intron 40.0%
ATGACACGCTTATCTGCATT+GGG + chr3_3:48569892-48569911 None:intergenic 40.0%
TATGACACGCTTATCTGCAT+TGG + chr3_3:48569893-48569912 None:intergenic 40.0%
TTGGTCCTCAATGCAGATAA+GGG - chr3_3:48569966-48569985 Msa0455580:intron 40.0%
ACATGAAATTGCCTTTGTGC+AGG - chr3_3:48570104-48570123 Msa0455580:intron 40.0%
!! GTGGATTTACATGGCTTTGA+TGG - chr3_3:48570346-48570365 Msa0455580:intron 40.0%
!! ATGGCTTTGATGGATTAGGT+GGG - chr3_3:48570356-48570375 Msa0455580:intron 40.0%
! CAACCGGTTCCAATATACAT+GGG + chr3_3:48570382-48570401 None:intergenic 40.0%
ATCTCTACTGTGAAAGCAAC+CGG + chr3_3:48570398-48570417 None:intergenic 40.0%
TCTTGCAAGTTGTACCTATG+AGG - chr3_3:48570540-48570559 Msa0455580:intron 40.0%
! CCATGATGTGTTTTCCTCAT+AGG + chr3_3:48570557-48570576 None:intergenic 40.0%
CCTATGAGGAAAACACATCA+TGG - chr3_3:48570554-48570573 Msa0455580:intron 40.0%
AAACACATCATGGGGAAAAG+AGG - chr3_3:48570564-48570583 Msa0455580:intron 40.0%
CTACAGATGGGACTACTATA+TGG - chr3_3:48571285-48571304 Msa0455580:intron 40.0%
ACTATATGGTTGTGTAGTGG+AGG - chr3_3:48571299-48571318 Msa0455580:intron 40.0%
TTGAACAAGTGATTCTGGCA+AGG + chr3_3:48571418-48571437 None:intergenic 40.0%
CAACATAAGAGATGGTCTGA+AGG - chr3_3:48571435-48571454 Msa0455580:intron 40.0%
! AGTCCTATTTGGTACGCTTT+TGG - chr3_3:48571486-48571505 Msa0455580:intron 40.0%
CAATAAGACATTTGAAGGCC+TGG + chr3_3:48571522-48571541 None:intergenic 40.0%
! CCTTTGAGGAGATATAGTGA+AGG + chr3_3:48571600-48571619 None:intergenic 40.0%
CCTTCACTATATCTCCTCAA+AGG - chr3_3:48571597-48571616 Msa0455580:intron 40.0%
TTTCATACCTGTGGGAACAA+GGG + chr3_3:48571627-48571646 None:intergenic 40.0%
! TTTTCATACCTGTGGGAACA+AGG + chr3_3:48571628-48571647 None:intergenic 40.0%
!! TTAGAGTTTTTGAGGGTAGG+AGG - chr3_3:48571795-48571814 Msa0455580:intron 40.0%
! TAGGAGGTACAATGAAAGGT+TGG - chr3_3:48571811-48571830 Msa0455580:intron 40.0%
!! AAGGTTGGTGGAATGAGTTA+AGG - chr3_3:48571826-48571845 Msa0455580:intron 40.0%
GTGGAATGAGTTAAGGATGT+GGG - chr3_3:48571833-48571852 Msa0455580:intron 40.0%
TGGCATCAACAAAGGCAAAA+AGG + chr3_3:48571881-48571900 None:intergenic 40.0%
CTTCAACATGGCATCAACAA+AGG + chr3_3:48571889-48571908 None:intergenic 40.0%
GTAGCCAATAAAGTGAGCAT+TGG + chr3_3:48572017-48572036 None:intergenic 40.0%
! GTCTTGTTGGGATGTTGTTA+AGG - chr3_3:48572060-48572079 Msa0455580:intron 40.0%
TGTTGGGATGTTGTTAAGGA+AGG - chr3_3:48572064-48572083 Msa0455580:intron 40.0%
AAGATAAGGGAAGATTGCCA+AGG - chr3_3:48572201-48572220 Msa0455580:CDS 40.0%
GATTTAACAGCAACAGACCT+TGG + chr3_3:48572221-48572240 None:intergenic 40.0%
ACTAGAGAAACAAGAGGTCA+TGG + chr3_3:48572376-48572395 None:intergenic 40.0%
AGGCATACTAGAGAAACAAG+AGG + chr3_3:48572382-48572401 None:intergenic 40.0%
TGTAAGTAGACGGTTTGAGA+GGG + chr3_3:48572405-48572424 None:intergenic 40.0%
ATGTAAGTAGACGGTTTGAG+AGG + chr3_3:48572406-48572425 None:intergenic 40.0%
CCTCTCCTTGTCTCAAACAA+TGG + chr3_3:48565798-48565817 None:intergenic 45.0%
! CCATTGTTTGAGACAAGGAG+AGG - chr3_3:48565795-48565814 Msa0455580:three_prime_UTR 45.0%
! TTTGAGACAAGGAGAGGGAA+GGG - chr3_3:48565801-48565820 Msa0455580:three_prime_UTR 45.0%
GGAAGGGTTGCCTGAAAATA+GGG + chr3_3:48566001-48566020 None:intergenic 45.0%
TCAGAGAGTCTTTGTGGGAA+GGG + chr3_3:48566017-48566036 None:intergenic 45.0%
TTCAGAGAGTCTTTGTGGGA+AGG + chr3_3:48566018-48566037 None:intergenic 45.0%
TCCCACAAAGACTCTCTGAA+AGG - chr3_3:48566018-48566037 Msa0455580:CDS 45.0%
TGAGAACATGTTGCCCAAAG+TGG - chr3_3:48566830-48566849 Msa0455580:intron 45.0%
AGAGCTCACCTTTAATGAGG+AGG - chr3_3:48567376-48567395 Msa0455580:intron 45.0%
TCACCTTTAATGAGGAGGAG+CGG - chr3_3:48567381-48567400 Msa0455580:intron 45.0%
CGCAAATCAGTTCAATGAGG+AGG - chr3_3:48567536-48567555 Msa0455580:CDS 45.0%
ATCAGTTCAATGAGGAGGAG+GGG - chr3_3:48567541-48567560 Msa0455580:CDS 45.0%
TGACGGTGAAAATGATGGCT+TGG - chr3_3:48567566-48567585 Msa0455580:CDS 45.0%
AATCAGCTCAATGAGGAGGA+TGG - chr3_3:48567624-48567643 Msa0455580:CDS 45.0%
ATCAGCTCAATGAGGAGGAT+GGG - chr3_3:48567625-48567644 Msa0455580:CDS 45.0%
AATCAGCTCAATGAGGAGGA+GGG + chr3_3:48567624-48567643 None:intergenic 45.0%
AAATCAGCTCAATGAGGAGG+AGG + chr3_3:48567623-48567642 None:intergenic 45.0%
!! CTCCTCATTGAGCTGATTTG+CGG - chr3_3:48567657-48567676 Msa0455580:CDS 45.0%
AACCGCAAATCAGCTCAATG+AGG + chr3_3:48567662-48567681 None:intergenic 45.0%
! TGCGGTTGAGAGGAGTATAA+AGG - chr3_3:48567675-48567694 Msa0455580:CDS 45.0%
! GTACTACATTGGTTGCTACG+CGG + chr3_3:48567833-48567852 None:intergenic 45.0%
CACAATATGCGGCTAACCAA+TGG - chr3_3:48567868-48567887 Msa0455580:intron 45.0%
!! ACGAGAGGTGTTATACAACC+AGG - chr3_3:48568188-48568207 Msa0455580:intron 45.0%
! AGGTGTTATACAACCAGGCA+CGG - chr3_3:48568193-48568212 Msa0455580:intron 45.0%
AGGCACGGAACCATATCAAA+GGG - chr3_3:48568208-48568227 Msa0455580:intron 45.0%
CTTCGGTACTTTACCCAACT+TGG + chr3_3:48569347-48569366 None:intergenic 45.0%
!! CAAGTTGGGTAAAGTACCGA+AGG - chr3_3:48569345-48569364 Msa0455580:intron 45.0%
! GGAGGCATACTCAAATCACA+AGG - chr3_3:48569366-48569385 Msa0455580:intron 45.0%
GACAATGCCAGAGATGAAGA+TGG - chr3_3:48569589-48569608 Msa0455580:intron 45.0%
CGAGCCAAATATACCAAGGT+GGG + chr3_3:48569625-48569644 None:intergenic 45.0%
ACGAGCCAAATATACCAAGG+TGG + chr3_3:48569626-48569645 None:intergenic 45.0%
CTCACGAGCCAAATATACCA+AGG + chr3_3:48569629-48569648 None:intergenic 45.0%
AGCTGGAGCCATGAATTCAT+TGG - chr3_3:48569678-48569697 Msa0455580:intron 45.0%
TGACACGCTTATCTGCATTG+GGG + chr3_3:48569891-48569910 None:intergenic 45.0%
GTTGGTCCTCAATGCAGATA+AGG - chr3_3:48569965-48569984 Msa0455580:intron 45.0%
TGACACCCTTATCTGCATTG+AGG + chr3_3:48569974-48569993 None:intergenic 45.0%
GGATGCACTTTGCTTCTTCA+TGG - chr3_3:48570068-48570087 Msa0455580:intron 45.0%
!! CATGGCTTTGATGGATTAGG+TGG - chr3_3:48570355-48570374 Msa0455580:intron 45.0%
TTAGGTGGGCCCATGTATAT+TGG - chr3_3:48570370-48570389 Msa0455580:intron 45.0%
! GCAACCGGTTCCAATATACA+TGG + chr3_3:48570383-48570402 None:intergenic 45.0%
CACAGTAGAGATGCACTATG+TGG - chr3_3:48570406-48570425 Msa0455580:intron 45.0%
GATGAATGCAAGAACTTGCG+AGG - chr3_3:48571006-48571025 Msa0455580:CDS 45.0%
AGTGATTCTGGCAAGGTTGT+TGG + chr3_3:48571411-48571430 None:intergenic 45.0%
! GCTTTTGGATTGATCAGTCC+AGG - chr3_3:48571501-48571520 Msa0455580:intron 45.0%
! AGGGTAGGAGGTACAATGAA+AGG - chr3_3:48571807-48571826 Msa0455580:intron 45.0%
GAGGTACAATGAAAGGTTGG+TGG - chr3_3:48571814-48571833 Msa0455580:intron 45.0%
GGTGGAATGAGTTAAGGATG+TGG - chr3_3:48571832-48571851 Msa0455580:intron 45.0%
!!! CAAATATTTTTTTTATATAA+AGG + chr3_3:48567179-48567198 None:intergenic 5.0%
!!! TTTTATTATTAAATAATCTT+GGG + chr3_3:48569213-48569232 None:intergenic 5.0%
!!! ATTTTATTATTAAATAATCT+TGG + chr3_3:48569214-48569233 None:intergenic 5.0%
!! AGATTATTTAATAATAAAAT+TGG - chr3_3:48569214-48569233 Msa0455580:intron 5.0%
!! AAAAAAAAAAAAAAAAAACT+AGG - chr3_3:48570629-48570648 Msa0455580:intron 5.0%
!! AAAAAAAAAAAAAAAAACTA+GGG - chr3_3:48570630-48570649 Msa0455580:intron 5.0%
! GTTTGAGACAAGGAGAGGGA+AGG - chr3_3:48565800-48565819 Msa0455580:three_prime_UTR 50.0%
TCCTTCGTCAAGCCCTTAGA+TGG - chr3_3:48565973-48565992 Msa0455580:CDS 50.0%
TCCATCTAAGGGCTTGACGA+AGG + chr3_3:48565977-48565996 None:intergenic 50.0%
GGGAAGGGTTGCCTGAAAAT+AGG + chr3_3:48566002-48566021 None:intergenic 50.0%
AGACCGCTCCTCCTCATTAA+AGG + chr3_3:48567387-48567406 None:intergenic 50.0%
CGGTCTGACGGTGAAAATGA+TGG - chr3_3:48567401-48567420 Msa0455580:intron 50.0%
GGGTCTGACGGTGAAAATGA+TGG - chr3_3:48567561-48567580 Msa0455580:CDS 50.0%
CGCAAATCAGCTCAATGAGG+AGG - chr3_3:48567620-48567639 Msa0455580:CDS 50.0%
CGCAAATCAGCTCAATGAGG+AGG + chr3_3:48567620-48567639 None:intergenic 50.0%
!! TGAGCTGATTTGCGGTTGAG+AGG - chr3_3:48567665-48567684 Msa0455580:CDS 50.0%
CTTTGATATGGTTCCGTGCC+TGG + chr3_3:48568209-48568228 None:intergenic 50.0%
CAGGCACGGAACCATATCAA+AGG - chr3_3:48568207-48568226 Msa0455580:intron 50.0%
GGCACGGAACCATATCAAAG+GGG - chr3_3:48568209-48568228 Msa0455580:intron 50.0%
GCACGGAACCATATCAAAGG+GGG - chr3_3:48568210-48568229 Msa0455580:intron 50.0%
GTCAAGTGCCCCCTTTGATA+TGG + chr3_3:48568221-48568240 None:intergenic 50.0%
!! GTTGGGTAAAGTACCGAAGG+AGG - chr3_3:48569348-48569367 Msa0455580:intron 50.0%
!! TGGGTTTGTTATGCCCACCT+TGG - chr3_3:48569609-48569628 Msa0455580:intron 50.0%
GTGATATTGGCAATGCCCTG+AGG + chr3_3:48570132-48570151 None:intergenic 50.0%
GGGCCCATGTATATTGGAAC+CGG - chr3_3:48570376-48570395 Msa0455580:intron 50.0%
GGAACAAGGGAATGCCTTTG+AGG + chr3_3:48571614-48571633 None:intergenic 50.0%
AAGTAGACGGTTTGAGAGGG+AGG + chr3_3:48572402-48572421 None:intergenic 50.0%
AATGAGGAGGAGCGGTCTGA+CGG - chr3_3:48567389-48567408 Msa0455580:intron 55.0%
AATGAGGAGGAGGGGTCTGA+CGG - chr3_3:48567549-48567568 Msa0455580:CDS 55.0%
TTGTGGTCGGGGTTTGAACG+TGG - chr3_3:48567956-48567975 Msa0455580:CDS 55.0%
AGGCATTCCCTTGTTCCCAC+AGG - chr3_3:48571617-48571636 Msa0455580:intron 55.0%
TGCCTTTGTGCAGGCTCCTC+AGG - chr3_3:48570113-48570132 Msa0455580:intron 60.0%
GCCTTTGTGCAGGCTCCTCA+GGG - chr3_3:48570114-48570133 Msa0455580:intron 60.0%
GCCCTGAGGAGCCTGCACAA+AGG + chr3_3:48570118-48570137 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 48565669 48572452 48565669 ID=Msa0455580;Name=Msa0455580
chr3_3 mRNA 48565669 48572452 48565669 ID=Msa0455580-mRNA-1;Parent=Msa0455580;Name=Msa0455580-mRNA-1;_AED=0.29;_eAED=0.29;_QI=75|1|1|1|0.87|0.77|9|163|730
chr3_3 exon 48565669 48566389 48565669 ID=Msa0455580-mRNA-1:exon:9096;Parent=Msa0455580-mRNA-1
chr3_3 exon 48566483 48566830 48566483 ID=Msa0455580-mRNA-1:exon:9095;Parent=Msa0455580-mRNA-1
chr3_3 exon 48567536 48567775 48567536 ID=Msa0455580-mRNA-1:exon:9094;Parent=Msa0455580-mRNA-1
chr3_3 exon 48567927 48568139 48567927 ID=Msa0455580-mRNA-1:exon:9093;Parent=Msa0455580-mRNA-1
chr3_3 exon 48568422 48568550 48568422 ID=Msa0455580-mRNA-1:exon:9092;Parent=Msa0455580-mRNA-1
chr3_3 exon 48568677 48568817 48568677 ID=Msa0455580-mRNA-1:exon:9091;Parent=Msa0455580-mRNA-1
chr3_3 exon 48570997 48571294 48570997 ID=Msa0455580-mRNA-1:exon:9090;Parent=Msa0455580-mRNA-1
chr3_3 exon 48572082 48572376 48572082 ID=Msa0455580-mRNA-1:exon:9089;Parent=Msa0455580-mRNA-1
chr3_3 exon 48572407 48572452 48572407 ID=Msa0455580-mRNA-1:exon:9088;Parent=Msa0455580-mRNA-1
chr3_3 five_prime_UTR 48572407 48572452 48572407 ID=Msa0455580-mRNA-1:five_prime_utr;Parent=Msa0455580-mRNA-1
chr3_3 five_prime_UTR 48572348 48572376 48572348 ID=Msa0455580-mRNA-1:five_prime_utr;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48572082 48572347 48572082 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48570997 48571294 48570997 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48568677 48568817 48568677 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48568422 48568550 48568422 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48567927 48568139 48567927 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48567536 48567775 48567536 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48566483 48566830 48566483 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 CDS 48565832 48566389 48565832 ID=Msa0455580-mRNA-1:cds;Parent=Msa0455580-mRNA-1
chr3_3 three_prime_UTR 48565669 48565831 48565669 ID=Msa0455580-mRNA-1:three_prime_utr;Parent=Msa0455580-mRNA-1
Gene Sequence

>Msa0455580

ATGGGGAAAGAGGAGTATTATCCATTGTTTGAGACAAGGAGAGGGAAGGGAAGACTCATATACATAATATTCTCTTTCTCTTTGTTTGTAGGAATTTGCTCCATTTGGGTTTATAGAGTGAGTTACATACCAAAAGAAGATGGAAAATGGGTTTGGATTGGATTGCTTTGTGCTGAACTATGGTTTGGTTTTTATTGGTTCCTTCGTCAAGCCCTTAGATGGAACCCTATTTTCAGGCAACCCTTCCCACAAAGACTCTCTGAAAGATATGAGAACATGTTGCCCAAAGTGGACATATTTGTGTGTACGGCAAATCCAGATATTGAACCACCAATAATGGTGATCAACACAGCATATGATTATCCAACAGAGAAGCTTAGTGTGTATCTTTCAGATGATGCTGGATCAGATATTACATTTTATGCTCTCTTAGAGGCTTCTAAATTTGCTAAGCATTGGTTGCCATTTTGCAAGAGATTCAATGTTGAACCTAGGTCACCAGATGCATATTTCAAGACCTTAGACACTTACCCAAATAATGCTAAAGAGCTTTTGGCCATTAAGAGAATGTACCAAGATATGGAAAGTCGAGTAGAAAATGCATCCAAGTTGGGTAAAGTACCGAAGGAGGCATACTCAAATCACAAGGAATTTTCTCAATGGGGTTCATATTCATCAAGACGTGACCATGACGCAATTCTTCAAATACTGCTTCATAGAAAGGACAATGCCAGAGATGAAGATGGGTTTGTTATGCCCACCTTGGTATATTTGGCTCGTGAGAAAAGACCCCAATTTCAACATAACTTCAAAGCTGGAGCCATGAATTCATTGATAAGGGTGTCATCAATGATTAGCAATGGGAAAATAATTCTCAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTTTGCTTCTTCATGGATGAAGAAAAGGGACATGAAATTGCCTTTGTGCAGGCTCCTCAGGGCATTGCCAATATCACAAAAAATGACATATATGGTGGTTATTTTCGTATACCTCATGAGGTGGATTTACATGGCTTTGATGGATTAGGTGGGCCCATGTATATTGGAACCGGTTGCTTTCACAGTAGAGATGCACTATGTGGAAGAAAGTATAGTGATCTATACAAGATTGATTGGAAGAATGTAAATGATGAAAATATTGATCATATGATAAAAGAAGAAAGTTTGCAAGAGCTAGAAGAGAAATCAAAGACTCTTGCAAGTTGTACCTATGAGGAAAACACATCATGGGGAAAAGAGATGGGACTACTATATGGTTGTGTAGTGGAGGATATAATAACAGGATTATCTATTTTATGCAAAGGATGGACATCAATATATTATAATCCAACAAGAAAAGCTTTCTTAGGTTTGACTCCAACAACCTTGCCAGAATCACTTGTTCAACATAAGAGATGGTCTGAAGGACAATTTCAAGTTGCACTTTCAAAGTTCAGTCCTATTTGGTACGCTTTTGGATTGATCAGTCCAGGCCTTCAAATGTCTTATTGTTACTATAATCTATGGGTGTTAAACTCTTTTCCAACTTTGTATTATTGCATCATCCCTTCACTATATCTCCTCAAAGGCATTCCCTTGTTCCCACAGATTTCAAATCCATGGTTCATACCTTTTGCATATGTCATAGTTGGTGATTCAACATACTGTTTGTTAGAGTTTTTGAGGGTAGGAGGTACAATGAAAGGTTGGTGGAATGAGTTAAGGATGTGGGTTTACAAGAGAACAAGTTCTTACCTTTTTGCCTTTGTTGATGCCATGTTGAAGTTTTTTGGATTTTCAAATTCAGCTTTCATAATATCGGCTAAGGTAGCTGAAGAAAATGTTTCACAAAGATATGAGAAGGAAATTATGGAATTTGGAAACTCATCTCCAATGCTCACTTTATTGGCTACACTTGCAATGCTGAATGTGTTTTGTCTTGTTGGGATGTTGTTAAGGAAGGTTGTGTTAAGTGGAGCAAGTGTTACATTATTTGAGGCAATGTTATTGCAAGTTTTACTATGTGGGGTTTTGGTTCTTATCAATATACCTATTTATCAAGGCCTTTTCCTAAGGAAAGATAAGGGAAGATTGCCAAGGTCTGTTGCTGTTAAATCAACAACATTAGCTCTGAGTGCATGTGTCCTATTTACTTACCTTGGTTAA
Protein sequence

>Msa0455580

MGKEEYYPLFETRRGKGRLIYIIFSFSLFVGICSIWVYRVSYIPKEDGKWVWIGLLCAELWFGFYWFLRQALRWNPIFRQPFPQRLSERYENMLPKVDIFVCTANPDIEPPIMVINTAYDYPTEKLSVYLSDDAGSDITFYALLEASKFAKHWLPFCKRFNVEPRSPDAYFKTLDTYPNNAKELLAIKRMYQDMESRVENASKLGKVPKEAYSNHKEFSQWGSYSSRRDHDAILQILLHRKDNARDEDGFVMPTLVYLAREKRPQFQHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSLRDALCFFMDEEKGHEIAFVQAPQGIANITKNDIYGGYFRIPHEVDLHGFDGLGGPMYIGTGCFHSRDALCGRKYSDLYKIDWKNVNDENIDHMIKEESLQELEEKSKTLASCTYEENTSWGKEMGLLYGCVVEDIITGLSILCKGWTSIYYNPTRKAFLGLTPTTLPESLVQHKRWSEGQFQVALSKFSPIWYAFGLISPGLQMSYCYYNLWVLNSFPTLYYCIIPSLYLLKGIPLFPQISNPWFIPFAYVIVGDSTYCLLEFLRVGGTMKGWWNELRMWVYKRTSSYLFAFVDAMLKFFGFSNSAFIISAKVAEENVSQRYEKEIMEFGNSSPMLTLLATLAMLNVFCLVGMLLRKVVLSGASVTLFEAMLLQVLLCGVLVLINIPIYQGLFLRKDKGRLPRSVAVKSTTLALSACVLFTYLG*