Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411290 | AES70600.1 | 89.331 | 478 | 48 | 1 | 1 | 478 | 258 | 732 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411290 | sp|Q8VZK9|CSLE1_ARATH | 55.858 | 478 | 197 | 2 | 1 | 478 | 266 | 729 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411290 | G7IV12 | 89.331 | 478 | 48 | 1 | 1 | 478 | 258 | 732 | 0.0 | 870 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0411290 | 0.805178 | 1.513565e-49 | -8.615850e-47 |
| Msa0017420 | Msa0411290 | 0.807701 | 4.444074e-50 | -8.615850e-47 |
| Msa0030030 | Msa0411290 | 0.805707 | 1.172175e-49 | -8.615850e-47 |
| Msa0039200 | Msa0411290 | 0.809883 | 1.518238e-50 | -8.615850e-47 |
| Msa0047470 | Msa0411290 | 0.801173 | 1.020338e-48 | -8.615850e-47 |
| Msa0051100 | Msa0411290 | 0.804654 | 1.947585e-49 | -8.615850e-47 |
| Msa0055280 | Msa0411290 | 0.814114 | 1.816635e-51 | -8.615850e-47 |
| Msa0055590 | Msa0411290 | 0.809817 | 1.568339e-50 | -8.615850e-47 |
| Msa0062750 | Msa0411290 | 0.807375 | 5.211284e-50 | -8.615850e-47 |
| Msa0067580 | Msa0411290 | 0.808756 | 2.649119e-50 | -8.615850e-47 |
| Msa0086820 | Msa0411290 | 0.802230 | 6.191682e-49 | -8.615850e-47 |
| Msa0106120 | Msa0411290 | -0.826678 | 2.377868e-54 | -8.615850e-47 |
| Msa0122540 | Msa0411290 | 0.802436 | 5.615369e-49 | -8.615850e-47 |
| Msa0133670 | Msa0411290 | 0.810105 | 1.360192e-50 | -8.615850e-47 |
| Msa0133880 | Msa0411290 | 0.807545 | 4.798213e-50 | -8.615850e-47 |
| Msa0141670 | Msa0411290 | 0.804439 | 2.158663e-49 | -8.615850e-47 |
| Msa0147550 | Msa0411290 | 0.803435 | 3.490426e-49 | -8.615850e-47 |
| Msa0184120 | Msa0411290 | 0.808929 | 2.432694e-50 | -8.615850e-47 |
| Msa0197750 | Msa0411290 | -0.816880 | 4.401604e-52 | -8.615850e-47 |
| Msa0222510 | Msa0411290 | 0.807496 | 4.912916e-50 | -8.615850e-47 |
| Msa0371610 | Msa0411290 | 0.802035 | 6.789306e-49 | -8.615850e-47 |
| Msa0371820 | Msa0411290 | 0.807619 | 4.626968e-50 | -8.615850e-47 |
| Msa0379900 | Msa0411290 | 0.802399 | 5.714245e-49 | -8.615850e-47 |
| Msa0404870 | Msa0411290 | 0.863392 | 2.571659e-64 | -8.615850e-47 |
| Msa0411290 | Msa0413740 | 0.849502 | 3.104367e-60 | -8.615850e-47 |
| Msa0411290 | Msa0418000 | 0.815403 | 9.411854e-52 | -8.615850e-47 |
| Msa0411290 | Msa0420070 | 0.819186 | 1.325322e-52 | -8.615850e-47 |
| Msa0411290 | Msa0423600 | 0.800112 | 1.678821e-48 | -8.615850e-47 |
| Msa0411290 | Msa0427050 | 0.805984 | 1.025202e-49 | -8.615850e-47 |
| Msa0411290 | Msa0455260 | 0.811432 | 7.023296e-51 | -8.615850e-47 |
| Msa0411290 | Msa0455580 | 0.868239 | 7.566907e-66 | -8.615850e-47 |
| Msa0411290 | Msa0458790 | 0.811630 | 6.359287e-51 | -8.615850e-47 |
| Msa0411290 | Msa0466100 | 0.815970 | 7.035490e-52 | -8.615850e-47 |
| Msa0411290 | Msa0470650 | 0.803852 | 2.860237e-49 | -8.615850e-47 |
| Msa0411290 | Msa0482580 | 0.851871 | 6.689606e-61 | -8.615850e-47 |
| Msa0411290 | Msa0486860 | 0.822134 | 2.786129e-53 | -8.615850e-47 |
| Msa0411290 | Msa0505390 | 0.845334 | 4.333713e-59 | -8.615850e-47 |
| Msa0411290 | Msa0539320 | 0.807683 | 4.483231e-50 | -8.615850e-47 |
| Msa0411290 | Msa0553350 | 0.813233 | 2.838830e-51 | -8.615850e-47 |
| Msa0411290 | Msa0574170 | 0.800676 | 1.288760e-48 | -8.615850e-47 |
| Msa0411290 | Msa0575450 | 0.816570 | 5.166893e-52 | -8.615850e-47 |
| Msa0411290 | Msa0581340 | 0.805343 | 1.397616e-49 | -8.615850e-47 |
| Msa0411290 | Msa0598250 | 0.826121 | 3.227287e-54 | -8.615850e-47 |
| Msa0411290 | Msa0599250 | 0.810384 | 1.184273e-50 | -8.615850e-47 |
| Msa0411290 | Msa0606060 | 0.800675 | 1.289301e-48 | -8.615850e-47 |
| Msa0411290 | Msa0619330 | 0.808166 | 3.539447e-50 | -8.615850e-47 |
| Msa0411290 | Msa0620640 | 0.824138 | 9.495014e-54 | -8.615850e-47 |
| Msa0411290 | Msa0621770 | 0.810769 | 9.776114e-51 | -8.615850e-47 |
| Msa0411290 | Msa0621890 | 0.827359 | 1.633818e-54 | -8.615850e-47 |
| Msa0411290 | Msa0622390 | 0.810011 | 1.424664e-50 | -8.615850e-47 |
| Msa0411290 | Msa0626890 | 0.803101 | 4.094221e-49 | -8.615850e-47 |
| Msa0411290 | Msa0635130 | 0.803131 | 4.035728e-49 | -8.615850e-47 |
| Msa0411290 | Msa0635990 | 0.807549 | 4.787263e-50 | -8.615850e-47 |
| Msa0411290 | Msa0648180 | 0.809215 | 2.112576e-50 | -8.615850e-47 |
| Msa0411290 | Msa0654060 | 0.813085 | 3.059964e-51 | -8.615850e-47 |
| Msa0411290 | Msa0665910 | -0.807815 | 4.203487e-50 | -8.615850e-47 |
| Msa0411290 | Msa0678240 | 0.831669 | 1.464123e-55 | -8.615850e-47 |
| Msa0411290 | Msa0686610 | 0.806450 | 8.176117e-50 | -8.615850e-47 |
| Msa0411290 | Msa0690530 | 0.814855 | 1.245696e-51 | -8.615850e-47 |
| Msa0411290 | Msa0714020 | 0.818893 | 1.545771e-52 | -8.615850e-47 |
| Msa0411290 | Msa0714160 | 0.807164 | 5.777035e-50 | -8.615850e-47 |
| Msa0411290 | Msa0719340 | 0.847193 | 1.350364e-59 | -8.615850e-47 |
| Msa0411290 | Msa0739570 | 0.816435 | 5.537570e-52 | -8.615850e-47 |
| Msa0411290 | Msa0744450 | 0.811334 | 7.374897e-51 | -8.615850e-47 |
| Msa0411290 | Msa0756480 | 0.801686 | 8.008051e-49 | -8.615850e-47 |
| Msa0411290 | Msa0771960 | 0.806945 | 6.428471e-50 | -8.615850e-47 |
| Msa0411290 | Msa0772150 | 0.812017 | 5.237873e-51 | -8.615850e-47 |
| Msa0411290 | Msa0797620 | 0.800125 | 1.668869e-48 | -8.615850e-47 |
| Msa0411290 | Msa0804930 | 0.803465 | 3.441278e-49 | -8.615850e-47 |
| Msa0411290 | Msa0835510 | 0.809790 | 1.589924e-50 | -8.615850e-47 |
| Msa0411290 | Msa0860270 | 0.813719 | 2.219541e-51 | -8.615850e-47 |
| Msa0411290 | Msa0864950 | 0.821289 | 4.369859e-53 | -8.615850e-47 |
| Msa0411290 | Msa0885320 | 0.802830 | 4.656269e-49 | -8.615850e-47 |
| Msa0411290 | Msa0903730 | 0.815625 | 8.400207e-52 | -8.615850e-47 |
| Msa0411290 | Msa0934830 | 0.807338 | 5.308509e-50 | -8.615850e-47 |
| Msa0411290 | Msa0951720 | 0.801950 | 7.069990e-49 | -8.615850e-47 |
| Msa0411290 | Msa0971860 | 0.803499 | 3.385927e-49 | -8.615850e-47 |
| Msa0411290 | Msa0973230 | 0.812523 | 4.062293e-51 | -8.615850e-47 |
| Msa0411290 | Msa0978000 | 0.809081 | 2.256926e-50 | -8.615850e-47 |
| Msa0411290 | Msa1030280 | 0.803510 | 3.368502e-49 | -8.615850e-47 |
| Msa0411290 | Msa1032350 | 0.830923 | 2.234122e-55 | -8.615850e-47 |
| Msa0411290 | Msa1033670 | 0.805769 | 1.137839e-49 | -8.615850e-47 |
| Msa0411290 | Msa1044040 | 0.819662 | 1.032247e-52 | -8.615850e-47 |
| Msa0411290 | Msa1054890 | 0.826239 | 3.025455e-54 | -8.615850e-47 |
| Msa0411290 | Msa1069300 | 0.824302 | 8.688487e-54 | -8.615850e-47 |
| Msa0411290 | Msa1081530 | 0.809379 | 1.948026e-50 | -8.615850e-47 |
| Msa0411290 | Msa1081700 | 0.801177 | 1.018319e-48 | -8.615850e-47 |
| Msa0411290 | Msa1117830 | 0.819233 | 1.293410e-52 | -8.615850e-47 |
| Msa0411290 | Msa1122510 | 0.807211 | 5.646832e-50 | -8.615850e-47 |
| Msa0411290 | Msa1157160 | 0.818352 | 2.049721e-52 | -8.615850e-47 |
| Msa0411290 | Msa1161160 | 0.801053 | 1.079524e-48 | -8.615850e-47 |
| Msa0411290 | Msa1161760 | 0.809778 | 1.598930e-50 | -8.615850e-47 |
| Msa0411290 | Msa1177620 | 0.804887 | 1.741303e-49 | -8.615850e-47 |
| Msa0411290 | Msa1183730 | 0.801927 | 7.148049e-49 | -8.615850e-47 |
| Msa0411290 | Msa1201990 | 0.830909 | 2.251700e-55 | -8.615850e-47 |
| Msa0411290 | Msa1220230 | 0.810477 | 1.130356e-50 | -8.615850e-47 |
| Msa0411290 | Msa1221260 | 0.804301 | 2.307080e-49 | -8.615850e-47 |
| Msa0411290 | Msa1226600 | 0.828876 | 7.044596e-55 | -8.615850e-47 |
| Msa0411290 | Msa1231520 | 0.802083 | 6.637410e-49 | -8.615850e-47 |
| Msa0411290 | Msa1238480 | 0.867622 | 1.194692e-65 | -8.615850e-47 |
| Msa0411290 | Msa1238700 | 0.803676 | 3.112225e-49 | -8.615850e-47 |
| Msa0411290 | Msa1254770 | 0.826999 | 1.993483e-54 | -8.615850e-47 |
| Msa0411290 | Msa1254800 | 0.824382 | 8.322177e-54 | -8.615850e-47 |
| Msa0411290 | Msa1262310 | 0.801421 | 9.077249e-49 | -8.615850e-47 |
| Msa0411290 | Msa1280020 | 0.815782 | 7.750895e-52 | -8.615850e-47 |
| Msa0411290 | Msa1287160 | 0.817190 | 3.750172e-52 | -8.615850e-47 |
| Msa0411290 | Msa1287340 | 0.817929 | 2.555179e-52 | -8.615850e-47 |
| Msa0411290 | Msa1287640 | 0.807388 | 5.178883e-50 | -8.615850e-47 |
| Msa0411290 | Msa1295010 | 0.844213 | 8.689853e-59 | -8.615850e-47 |
| Msa0411290 | Msa1309910 | 0.807799 | 4.236290e-50 | -8.615850e-47 |
| Msa0411290 | Msa1316720 | 0.803042 | 4.209254e-49 | -8.615850e-47 |
| Msa0411290 | Msa1319440 | 0.830456 | 2.907814e-55 | -8.615850e-47 |
| Msa0411290 | Msa1326000 | 0.819135 | 1.361268e-52 | -8.615850e-47 |
| Msa0411290 | Msa1327820 | 0.807385 | 5.186598e-50 | -8.615850e-47 |
| Msa0411290 | Msa1329990 | 0.826525 | 2.586492e-54 | -8.615850e-47 |
| Msa0411290 | Msa1355260 | 0.830070 | 3.612540e-55 | -8.615850e-47 |
| Msa0411290 | Msa1357170 | 0.801200 | 1.007336e-48 | -8.615850e-47 |
| Msa0411290 | Msa1357720 | 0.808079 | 3.693758e-50 | -8.615850e-47 |
| Msa0411290 | Msa1379070 | 0.816420 | 5.581069e-52 | -8.615850e-47 |
| Msa0411290 | Msa1379090 | 0.821154 | 4.693746e-53 | -8.615850e-47 |
| Msa0411290 | Msa1386020 | 0.838343 | 3.043353e-57 | -8.615850e-47 |
| Msa0411290 | Msa1388230 | 0.814457 | 1.525881e-51 | -8.615850e-47 |
| Msa0411290 | Msa1405470 | 0.817107 | 3.915406e-52 | -8.615850e-47 |
| Msa0411290 | Msa1418200 | 0.809345 | 1.980659e-50 | -8.615850e-47 |
| Msa0411290 | Msa1426750 | 0.801773 | 7.687126e-49 | -8.615850e-47 |
| Msa0411290 | Msa1428440 | 0.837056 | 6.510569e-57 | -8.615850e-47 |
| Msa0411290 | Msa1440180 | 0.811910 | 5.528015e-51 | -8.615850e-47 |
| Msa0411290 | Msa1449740 | 0.810511 | 1.111454e-50 | -8.615850e-47 |
| Msa0411290 | Msa1450420 | 0.804301 | 2.306367e-49 | -8.615850e-47 |
| Msa0411290 | Msa1460510 | 0.801068 | 1.072038e-48 | -8.615850e-47 |
| Msa0241580 | Msa0411290 | 0.801191 | 1.011649e-48 | -8.615850e-47 |
| Msa0256170 | Msa0411290 | 0.821503 | 3.901094e-53 | -8.615850e-47 |
| Msa0260960 | Msa0411290 | 0.832491 | 9.171572e-56 | -8.615850e-47 |
| Msa0260970 | Msa0411290 | 0.811713 | 6.099980e-51 | -8.615850e-47 |
| Msa0272420 | Msa0411290 | 0.838043 | 3.635977e-57 | -8.615850e-47 |
| Msa0277280 | Msa0411290 | -0.816838 | 4.499153e-52 | -8.615850e-47 |
| Msa0277310 | Msa0411290 | 0.800991 | 1.111576e-48 | -8.615850e-47 |
| Msa0279490 | Msa0411290 | 0.800844 | 1.190874e-48 | -8.615850e-47 |
| Msa0281570 | Msa0411290 | 0.803141 | 4.015449e-49 | -8.615850e-47 |
| Msa0282860 | Msa0411290 | 0.803639 | 3.166347e-49 | -8.615850e-47 |
| Msa0286790 | Msa0411290 | 0.815763 | 7.823492e-52 | -8.615850e-47 |
| Msa0290950 | Msa0411290 | 0.825024 | 5.871158e-54 | -8.615850e-47 |
| Msa0290970 | Msa0411290 | 0.832482 | 9.216163e-56 | -8.615850e-47 |
| Msa0295520 | Msa0411290 | 0.805889 | 1.073528e-49 | -8.615850e-47 |
| Msa0304990 | Msa0411290 | 0.813320 | 2.716637e-51 | -8.615850e-47 |
| Msa0306130 | Msa0411290 | 0.809020 | 2.326225e-50 | -8.615850e-47 |
| Msa0311330 | Msa0411290 | 0.808166 | 3.539797e-50 | -8.615850e-47 |
| Msa0312570 | Msa0411290 | 0.821520 | 3.864926e-53 | -8.615850e-47 |
| Msa0321800 | Msa0411290 | 0.800909 | 1.155157e-48 | -8.615850e-47 |
| Msa0323630 | Msa0411290 | 0.810834 | 9.465758e-51 | -8.615850e-47 |
| Msa0330270 | Msa0411290 | 0.815699 | 8.087234e-52 | -8.615850e-47 |
| Msa0331780 | Msa0411290 | 0.827079 | 1.907021e-54 | -8.615850e-47 |
| Msa0350020 | Msa0411290 | 0.822762 | 1.991661e-53 | -8.615850e-47 |
| Msa0358710 | Msa0411290 | 0.861823 | 7.825198e-64 | -8.615850e-47 |
| Msa0363760 | Msa0411290 | 0.820818 | 5.610665e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411290 | MtrunA17_Chr3g0102531 | 89.331 | 478 | 48 | 1 | 1 | 478 | 257 | 731 | 0.0 | 870 |
| Msa0411290 | MtrunA17_Chr3g0102541 | 85.386 | 479 | 70 | 0 | 1 | 479 | 258 | 736 | 0.0 | 840 |
| Msa0411290 | MtrunA17_Chr3g0102551 | 65.199 | 477 | 160 | 2 | 1 | 477 | 268 | 738 | 0.0 | 651 |
| Msa0411290 | MtrunA17_Chr1g0186381 | 34.765 | 489 | 303 | 4 | 1 | 478 | 254 | 737 | 5.51e-97 | 308 |
| Msa0411290 | MtrunA17_Chr4g0046401 | 37.263 | 475 | 278 | 8 | 1 | 462 | 254 | 721 | 2.50e-95 | 303 |
| Msa0411290 | MtrunA17_Chr3g0077511 | 34.402 | 468 | 283 | 6 | 4 | 454 | 233 | 693 | 1.85e-88 | 285 |
| Msa0411290 | MtrunA17_Chr3g0095791 | 32.976 | 467 | 293 | 5 | 1 | 453 | 229 | 689 | 6.82e-87 | 280 |
| Msa0411290 | MtrunA17_Chr2g0298581 | 33.970 | 471 | 285 | 6 | 1 | 454 | 230 | 691 | 1.94e-86 | 279 |
| Msa0411290 | MtrunA17_Chr2g0307191 | 33.615 | 473 | 282 | 7 | 1 | 453 | 230 | 690 | 4.23e-86 | 278 |
| Msa0411290 | MtrunA17_Chr2g0322361 | 34.008 | 494 | 291 | 11 | 1 | 468 | 253 | 737 | 3.75e-75 | 250 |
| Msa0411290 | MtrunA17_Chr8g0364641 | 29.515 | 515 | 307 | 7 | 1 | 468 | 447 | 952 | 7.69e-71 | 242 |
| Msa0411290 | MtrunA17_Chr2g0284211 | 32.420 | 438 | 229 | 4 | 1 | 371 | 424 | 861 | 7.78e-71 | 242 |
| Msa0411290 | MtrunA17_Chr2g0322371 | 32.661 | 496 | 297 | 11 | 1 | 469 | 243 | 728 | 2.64e-70 | 237 |
| Msa0411290 | MtrunA17_Chr1g0183381 | 30.843 | 522 | 297 | 9 | 1 | 469 | 366 | 876 | 5.31e-70 | 239 |
| Msa0411290 | MtrunA17_Chr4g0025201 | 31.400 | 500 | 295 | 10 | 1 | 468 | 247 | 730 | 8.48e-67 | 228 |
| Msa0411290 | MtrunA17_Chr2g0322351 | 31.349 | 504 | 297 | 12 | 1 | 477 | 248 | 729 | 3.72e-63 | 218 |
| Msa0411290 | MtrunA17_Chr1g0201731 | 31.696 | 448 | 229 | 7 | 1 | 371 | 534 | 981 | 6.09e-63 | 221 |
| Msa0411290 | MtrunA17_Chr4g0073711 | 27.652 | 528 | 310 | 9 | 1 | 468 | 494 | 1009 | 7.26e-58 | 206 |
| Msa0411290 | MtrunA17_Chr7g0269741 | 29.556 | 450 | 227 | 13 | 1 | 369 | 611 | 1051 | 3.61e-47 | 175 |
| Msa0411290 | MtrunA17_Chr8g0352231 | 49.219 | 128 | 65 | 0 | 1 | 128 | 514 | 641 | 1.48e-36 | 144 |
| Msa0411290 | MtrunA17_Chr8g0352231 | 29.808 | 312 | 193 | 6 | 166 | 468 | 755 | 1049 | 1.22e-33 | 135 |
| Msa0411290 | MtrunA17_Chr3g0088821 | 50.000 | 126 | 63 | 0 | 1 | 126 | 514 | 639 | 2.07e-36 | 143 |
| Msa0411290 | MtrunA17_Chr3g0088821 | 29.487 | 312 | 194 | 6 | 166 | 468 | 755 | 1049 | 5.50e-33 | 133 |
| Msa0411290 | MtrunA17_Chr8g0379241 | 48.413 | 126 | 65 | 0 | 1 | 126 | 439 | 564 | 7.62e-36 | 141 |
| Msa0411290 | MtrunA17_Chr8g0379241 | 34.615 | 208 | 134 | 1 | 166 | 371 | 666 | 873 | 2.96e-33 | 134 |
| Msa0411290 | MtrunA17_Chr3g0137951 | 35.545 | 211 | 129 | 3 | 166 | 372 | 763 | 970 | 8.42e-36 | 141 |
| Msa0411290 | MtrunA17_Chr3g0137951 | 50.000 | 126 | 63 | 0 | 1 | 126 | 524 | 649 | 8.90e-34 | 135 |
| Msa0411290 | MtrunA17_Chr2g0296991 | 30.556 | 324 | 196 | 8 | 155 | 468 | 711 | 1015 | 1.33e-35 | 141 |
| Msa0411290 | MtrunA17_Chr2g0296991 | 46.032 | 126 | 68 | 0 | 1 | 126 | 465 | 590 | 3.32e-33 | 134 |
| Msa0411290 | MtrunA17_Chr8g0383701 | 31.288 | 326 | 195 | 9 | 153 | 468 | 761 | 1067 | 1.95e-35 | 140 |
| Msa0411290 | MtrunA17_Chr8g0383701 | 50.794 | 126 | 62 | 0 | 1 | 126 | 532 | 657 | 5.44e-35 | 139 |
| Msa0411290 | MtrunA17_Chr7g0267731 | 50.000 | 126 | 63 | 0 | 1 | 126 | 426 | 551 | 3.13e-35 | 140 |
| Msa0411290 | MtrunA17_Chr7g0267731 | 26.431 | 367 | 236 | 6 | 124 | 478 | 623 | 967 | 8.65e-34 | 135 |
| Msa0411290 | MtrunA17_Chr3g0078671 | 30.945 | 307 | 199 | 6 | 166 | 468 | 723 | 1020 | 7.13e-34 | 135 |
| Msa0411290 | MtrunA17_Chr3g0078671 | 46.825 | 126 | 67 | 0 | 1 | 126 | 481 | 606 | 2.89e-31 | 128 |
| Msa0411290 | MtrunA17_Chr5g0410641 | 46.825 | 126 | 66 | 1 | 1 | 126 | 567 | 691 | 3.29e-33 | 134 |
| Msa0411290 | MtrunA17_Chr5g0410641 | 25.949 | 316 | 226 | 5 | 163 | 478 | 798 | 1105 | 6.27e-25 | 108 |
| Msa0411290 | MtrunA17_Chr2g0322331 | 30.909 | 330 | 206 | 9 | 156 | 478 | 60 | 374 | 1.10e-32 | 128 |
| Msa0411290 | MtrunA17_Chr4g0039801 | 47.619 | 126 | 65 | 1 | 1 | 126 | 588 | 712 | 8.10e-32 | 129 |
| Msa0411290 | MtrunA17_Chr4g0039801 | 27.097 | 310 | 212 | 7 | 163 | 469 | 819 | 1117 | 1.63e-25 | 110 |
| Msa0411290 | MtrunA17_Chr1g0165411 | 37.791 | 172 | 96 | 3 | 1 | 172 | 558 | 718 | 7.70e-31 | 126 |
| Msa0411290 | MtrunA17_Chr1g0165411 | 26.367 | 311 | 219 | 6 | 160 | 469 | 777 | 1078 | 3.27e-23 | 103 |
| Msa0411290 | MtrunA17_Chr1g0165421 | 44.203 | 138 | 73 | 2 | 1 | 138 | 572 | 705 | 1.72e-30 | 125 |
| Msa0411290 | MtrunA17_Chr1g0165421 | 25.796 | 314 | 223 | 6 | 163 | 475 | 808 | 1112 | 4.03e-23 | 103 |
| Msa0411290 | MtrunA17_Chr2g0297351 | 45.238 | 126 | 68 | 1 | 1 | 126 | 475 | 599 | 2.33e-30 | 125 |
| Msa0411290 | MtrunA17_Chr2g0297351 | 26.837 | 313 | 215 | 7 | 166 | 475 | 704 | 1005 | 1.25e-24 | 107 |
| Msa0411290 | MtrunA17_Chr7g0274751 | 44.444 | 126 | 69 | 1 | 1 | 126 | 376 | 500 | 4.25e-28 | 118 |
| Msa0411290 | MtrunA17_Chr2g0322341 | 49.451 | 91 | 46 | 0 | 1 | 91 | 252 | 342 | 3.59e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411290 | AT1G55850.1 | 55.858 | 478 | 197 | 2 | 1 | 478 | 266 | 729 | 0.0 | 541 |
| Msa0411290 | AT4G24000.2 | 37.229 | 462 | 277 | 5 | 1 | 460 | 60 | 510 | 4.27e-108 | 331 |
| Msa0411290 | AT4G23990.2 | 39.871 | 464 | 262 | 7 | 1 | 460 | 67 | 517 | 3.91e-107 | 329 |
| Msa0411290 | AT4G24000.1 | 37.229 | 462 | 277 | 5 | 1 | 460 | 252 | 702 | 8.49e-106 | 331 |
| Msa0411290 | AT4G23990.1 | 39.871 | 464 | 262 | 7 | 1 | 460 | 281 | 731 | 1.03e-104 | 329 |
| Msa0411290 | AT4G24010.1 | 35.924 | 476 | 286 | 4 | 1 | 471 | 262 | 723 | 9.65e-98 | 311 |
| Msa0411290 | AT5G17420.1 | 31.787 | 431 | 235 | 6 | 1 | 372 | 481 | 911 | 4.16e-71 | 244 |
| Msa0411290 | AT2G32540.1 | 32.703 | 529 | 277 | 16 | 1 | 478 | 251 | 751 | 2.89e-70 | 238 |
| Msa0411290 | AT2G25540.1 | 30.571 | 543 | 293 | 11 | 1 | 468 | 498 | 1031 | 3.20e-70 | 242 |
| Msa0411290 | AT2G32530.1 | 32.233 | 515 | 284 | 15 | 1 | 469 | 251 | 746 | 4.18e-70 | 237 |
| Msa0411290 | AT4G15290.1 | 32.485 | 511 | 290 | 12 | 1 | 469 | 251 | 748 | 1.51e-69 | 236 |
| Msa0411290 | AT4G15320.5 | 32.290 | 511 | 293 | 9 | 1 | 469 | 251 | 750 | 3.51e-69 | 235 |
| Msa0411290 | AT4G15320.3 | 32.290 | 511 | 293 | 9 | 1 | 469 | 251 | 750 | 3.77e-69 | 235 |
| Msa0411290 | AT4G15320.4 | 32.290 | 511 | 293 | 9 | 1 | 469 | 266 | 765 | 5.93e-69 | 234 |
| Msa0411290 | AT2G32620.4 | 30.829 | 519 | 290 | 15 | 1 | 470 | 155 | 653 | 7.07e-61 | 211 |
| Msa0411290 | AT2G32610.1 | 30.326 | 521 | 289 | 15 | 1 | 469 | 252 | 750 | 8.79e-61 | 212 |
| Msa0411290 | AT2G32620.1 | 30.829 | 519 | 290 | 15 | 1 | 470 | 251 | 749 | 3.05e-60 | 211 |
| Msa0411290 | AT4G18780.1 | 28.545 | 543 | 298 | 11 | 1 | 468 | 427 | 954 | 1.72e-58 | 208 |
| Msa0411290 | AT4G15320.1 | 30.201 | 447 | 216 | 8 | 1 | 374 | 294 | 717 | 9.38e-53 | 191 |
| Msa0411290 | AT4G15320.2 | 30.201 | 447 | 216 | 8 | 1 | 374 | 251 | 674 | 9.43e-53 | 190 |
| Msa0411290 | AT4G38190.1 | 27.808 | 543 | 306 | 14 | 1 | 478 | 569 | 1090 | 1.02e-52 | 192 |
| Msa0411290 | AT2G32620.3 | 32.231 | 363 | 196 | 10 | 1 | 328 | 251 | 598 | 3.68e-50 | 181 |
| Msa0411290 | AT2G32620.2 | 34.182 | 275 | 141 | 6 | 1 | 244 | 251 | 516 | 2.80e-44 | 163 |
| Msa0411290 | AT2G33100.2 | 25.632 | 554 | 317 | 16 | 1 | 475 | 482 | 1019 | 4.28e-38 | 149 |
| Msa0411290 | AT2G33100.1 | 25.632 | 554 | 317 | 16 | 1 | 475 | 482 | 1019 | 4.28e-38 | 149 |
| Msa0411290 | AT5G05170.1 | 51.587 | 126 | 61 | 0 | 1 | 126 | 502 | 627 | 2.47e-37 | 146 |
| Msa0411290 | AT5G05170.1 | 28.931 | 318 | 210 | 6 | 155 | 468 | 731 | 1036 | 7.61e-32 | 130 |
| Msa0411290 | AT5G09870.1 | 53.175 | 126 | 59 | 0 | 1 | 126 | 507 | 632 | 1.26e-36 | 144 |
| Msa0411290 | AT5G09870.1 | 29.538 | 325 | 212 | 7 | 148 | 468 | 729 | 1040 | 1.88e-31 | 129 |
| Msa0411290 | AT4G32410.1 | 31.475 | 305 | 197 | 6 | 166 | 468 | 757 | 1051 | 2.13e-36 | 144 |
| Msa0411290 | AT4G32410.1 | 47.619 | 126 | 66 | 0 | 1 | 126 | 518 | 643 | 5.26e-33 | 133 |
| Msa0411290 | AT5G64740.1 | 52.381 | 126 | 60 | 0 | 1 | 126 | 519 | 644 | 2.21e-36 | 144 |
| Msa0411290 | AT5G64740.1 | 28.615 | 325 | 215 | 6 | 148 | 468 | 744 | 1055 | 8.90e-32 | 130 |
| Msa0411290 | AT2G21770.1 | 50.794 | 126 | 62 | 0 | 1 | 126 | 525 | 650 | 6.08e-36 | 142 |
| Msa0411290 | AT2G21770.1 | 35.648 | 216 | 138 | 1 | 157 | 371 | 756 | 971 | 2.73e-34 | 137 |
| Msa0411290 | AT4G39350.1 | 36.232 | 207 | 131 | 1 | 166 | 371 | 761 | 967 | 2.26e-35 | 140 |
| Msa0411290 | AT4G39350.1 | 49.206 | 126 | 64 | 0 | 1 | 126 | 520 | 645 | 2.39e-35 | 140 |
| Msa0411290 | AT1G32180.1 | 45.588 | 136 | 73 | 1 | 1 | 136 | 428 | 562 | 1.43e-34 | 138 |
| Msa0411290 | AT1G32180.1 | 24.920 | 313 | 223 | 5 | 166 | 475 | 660 | 963 | 1.17e-20 | 96.3 |
| Msa0411290 | AT1G32180.2 | 45.588 | 136 | 73 | 1 | 1 | 136 | 428 | 562 | 1.43e-34 | 138 |
| Msa0411290 | AT1G32180.2 | 24.920 | 313 | 223 | 5 | 166 | 475 | 660 | 963 | 1.17e-20 | 96.3 |
| Msa0411290 | AT5G44030.1 | 31.310 | 313 | 188 | 8 | 166 | 468 | 725 | 1020 | 9.22e-34 | 135 |
| Msa0411290 | AT5G44030.1 | 45.238 | 126 | 69 | 0 | 1 | 126 | 458 | 583 | 7.15e-33 | 133 |
| Msa0411290 | AT5G44030.3 | 31.310 | 313 | 188 | 8 | 166 | 468 | 446 | 741 | 9.78e-34 | 135 |
| Msa0411290 | AT5G44030.3 | 45.238 | 126 | 69 | 0 | 1 | 126 | 179 | 304 | 3.69e-33 | 134 |
| Msa0411290 | AT5G44030.2 | 31.310 | 313 | 188 | 8 | 166 | 468 | 754 | 1049 | 1.07e-33 | 135 |
| Msa0411290 | AT5G44030.2 | 45.238 | 126 | 69 | 0 | 1 | 126 | 487 | 612 | 6.37e-33 | 133 |
| Msa0411290 | AT1G02730.1 | 50.000 | 126 | 62 | 1 | 1 | 126 | 619 | 743 | 2.94e-33 | 134 |
| Msa0411290 | AT1G02730.1 | 26.970 | 330 | 206 | 10 | 163 | 478 | 858 | 1166 | 7.33e-24 | 106 |
| Msa0411290 | AT3G03050.1 | 49.206 | 126 | 63 | 1 | 1 | 126 | 591 | 715 | 2.30e-32 | 132 |
| Msa0411290 | AT3G03050.1 | 25.316 | 316 | 222 | 6 | 166 | 478 | 825 | 1129 | 1.54e-25 | 111 |
| Msa0411290 | AT5G16910.1 | 48.413 | 126 | 64 | 1 | 1 | 126 | 594 | 718 | 4.98e-32 | 130 |
| Msa0411290 | AT5G16910.1 | 25.633 | 316 | 221 | 6 | 166 | 478 | 825 | 1129 | 8.90e-25 | 108 |
Find 165 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCAATGCTTACTTTAT+TGG | 0.119799 | 3_2:+53511135 | Msa0411290:CDS |
| TTTGAAGTTATGATGAAATT+TGG | 0.141625 | 3_2:-53508734 | None:intergenic |
| TAACTACCGTTGTAGGTATT+TGG | 0.146522 | 3_2:-53508559 | None:intergenic |
| AAAAGCTCTTTAGCATTATT+AGG | 0.175521 | 3_2:-53506551 | None:intergenic |
| TATGCCCACCTTGGTATATT+TGG | 0.175535 | 3_2:+53508696 | Msa0411290:exon |
| ATTATTGGTGGTTCAATATC+TGG | 0.182940 | 3_2:-53506320 | None:intergenic |
| TTTAACCAAGGTATGTAAAT+AGG | 0.183377 | 3_2:-53511393 | None:intergenic |
| TACCCAAAGATGATGGAAAA+TGG | 0.210935 | 3_2:+53505206 | Msa0411290:five_prime_UTR |
| CTTATTGTTACTATAATCTA+TGG | 0.216698 | 3_2:+53510660 | Msa0411290:CDS |
| TTTCAAAGTTCAGTCCTATT+TGG | 0.238172 | 3_2:+53510600 | Msa0411290:CDS |
| CCAACAAGAAAAGCTTTCTT+AGG | 0.246266 | 3_2:+53510503 | Msa0411290:CDS |
| GGGAAGGGTTGCCTGAAAAT+AGG | 0.246274 | 3_2:-53505304 | None:intergenic |
| TGAAAATAGGGTTCCATCTA+AGG | 0.252001 | 3_2:-53505291 | None:intergenic |
| CAAACAATTCTCAATCTCTA+AGG | 0.258363 | 3_2:+53509180 | Msa0411290:CDS |
| TCTTGAGTTGTGATTCTCTA+TGG | 0.276071 | 3_2:-53505046 | None:intergenic |
| TTATGTTGAACAAGTGATTC+TGG | 0.278433 | 3_2:-53510545 | None:intergenic |
| TGCCTTTGTGCAGGCTCCTC+AGG | 0.278611 | 3_2:+53509247 | Msa0411290:CDS |
| TTGTAGGAATTTGCTCCATT+TGG | 0.281017 | 3_2:+53505164 | Msa0411290:five_prime_UTR |
| GAGAAGGAAATTATGGAGTT+TGG | 0.286927 | 3_2:+53511106 | Msa0411290:CDS |
| TTCTCTTTCACTTTGTTTGT+AGG | 0.292513 | 3_2:+53505148 | Msa0411290:five_prime_UTR |
| TATTAAATTATTAGCAAATC+AGG | 0.299597 | 3_2:-53508591 | None:intergenic |
| AAGATATGAGAAGGAAATTA+TGG | 0.304188 | 3_2:+53511099 | Msa0411290:CDS |
| AAAGCTCTTTAGCATTATTA+GGG | 0.321781 | 3_2:-53506550 | None:intergenic |
| GTGGATTTACATGGCTTTGA+TGG | 0.323753 | 3_2:+53509477 | Msa0411290:CDS |
| GGATGCACTTTGCTTCTTCA+TGG | 0.325256 | 3_2:+53509202 | Msa0411290:CDS |
| ACTGTGTTAATCACCATTAT+TGG | 0.325856 | 3_2:-53506335 | None:intergenic |
| TGTAGGAATTTGCTCCATTT+GGG | 0.331776 | 3_2:+53505165 | Msa0411290:five_prime_UTR |
| TAATAATGCTAAAGAGCTTT+TGG | 0.331936 | 3_2:+53506553 | Msa0411290:five_prime_UTR |
| CTTCTTCATGGATGAAGAAA+AGG | 0.332640 | 3_2:+53509214 | Msa0411290:CDS |
| TCCTTCGTCAAGCCCTTAGA+TGG | 0.335267 | 3_2:+53505278 | Msa0411290:five_prime_UTR |
| GATTTAACTGCAACAGATCT+TGG | 0.335325 | 3_2:-53511343 | None:intergenic |
| TTGAAGTTATGATGAAATTT+GGG | 0.344454 | 3_2:-53508733 | None:intergenic |
| CTACAGATGGGACTACTATA+TGG | 0.347725 | 3_2:+53510410 | Msa0411290:intron |
| AAAGAGTACCAATGAATTCA+TGG | 0.349547 | 3_2:-53508764 | None:intergenic |
| GATTGCTTTGTGCTGAACTA+TGG | 0.350824 | 3_2:+53505239 | Msa0411290:five_prime_UTR |
| AGATATTGAACCACCAATAA+TGG | 0.352515 | 3_2:+53506322 | Msa0411290:five_prime_UTR |
| AGTCCTATTTGGTACGCTTT+CGG | 0.355629 | 3_2:+53510611 | Msa0411290:CDS |
| TTAGGTGGGCCCATGTATAT+TGG | 0.356630 | 3_2:+53509501 | Msa0411290:CDS |
| TGGTTACTTTGTTACCTTGA+TGG | 0.357220 | 3_2:-53506576 | None:intergenic |
| TTAACCAAGGTATGTAAATA+GGG | 0.358729 | 3_2:-53511392 | None:intergenic |
| AATTTAATATAACAATTAGT+TGG | 0.368833 | 3_2:+53508605 | Msa0411290:five_prime_UTR |
| TTACATGGCTTTGATGGATT+AGG | 0.370668 | 3_2:+53509483 | Msa0411290:CDS |
| AATCCGAAAGCGTACCAAAT+AGG | 0.371081 | 3_2:-53510614 | None:intergenic |
| AGTGATTCTGGCAAGGTTGT+TGG | 0.384499 | 3_2:-53510533 | None:intergenic |
| ATAGAGAATGTACCAAGATA+TGG | 0.396702 | 3_2:+53508294 | Msa0411290:intron |
| CTACTCGACTTTCCATATCT+TGG | 0.397111 | 3_2:-53508306 | None:intergenic |
| CTTTGTGCTGAACTATGGTT+TGG | 0.397394 | 3_2:+53505244 | Msa0411290:five_prime_UTR |
| AAGATGATGGAAAATGGGTT+TGG | 0.398362 | 3_2:+53505212 | Msa0411290:five_prime_UTR |
| TGGCATCAACAAAAGCAAAA+AGG | 0.398473 | 3_2:-53511003 | None:intergenic |
| AGGAAAAGGCCTTGATAGAT+AGG | 0.404078 | 3_2:-53511298 | None:intergenic |
| ATTATTAGGGTAAGTGTCTA+AGG | 0.410530 | 3_2:-53506537 | None:intergenic |
| AGTAACAATAAGACATTTGA+AGG | 0.411909 | 3_2:-53510649 | None:intergenic |
| CTTCGGTACTTCACCCAACT+TGG | 0.414455 | 3_2:-53508338 | None:intergenic |
| TGATTTGAGTATGCTTCCTT+CGG | 0.414471 | 3_2:-53508355 | None:intergenic |
| GGAAGGGTTGCCTGAAAATA+GGG | 0.417513 | 3_2:-53505303 | None:intergenic |
| ATAGATACTGCTTCATAGAA+AGG | 0.419423 | 3_2:+53508645 | Msa0411290:five_prime_UTR |
| ATCTTCCCTTATCTTTCCTT+AGG | 0.425033 | 3_2:-53511318 | None:intergenic |
| GTGATCTATACAAAATTGAT+TGG | 0.426052 | 3_2:+53509571 | Msa0411290:CDS |
| CATGGCTTTGATGGATTAGG+TGG | 0.429241 | 3_2:+53509486 | Msa0411290:CDS |
| CCTTATCTTTCCTTAGGAAA+AGG | 0.431312 | 3_2:-53511312 | None:intergenic |
| TTTGAGACAAGGAGAGGGAA+GGG | 0.431324 | 3_2:+53505106 | Msa0411290:five_prime_UTR |
| TTTCATCATAACTTCAAAGC+TGG | 0.436862 | 3_2:+53508739 | Msa0411290:CDS |
| TACCTTTGAGAGAGTCTTTG+TGG | 0.437674 | 3_2:-53505325 | None:intergenic |
| AACTCAAGAATTAACAAAGA+TGG | 0.443280 | 3_2:+53505060 | Msa0411290:five_prime_UTR |
| CACACAAATATGTCCACTTT+GGG | 0.444982 | 3_2:-53506287 | None:intergenic |
| TCAAGGAAGGTTGTGTTAAG+TGG | 0.448220 | 3_2:+53511202 | Msa0411290:CDS |
| GTAGTGGAGGATATAATAAC+AGG | 0.452467 | 3_2:+53510437 | Msa0411290:CDS |
| CTTCTAAATTTGCTAAGCAT+TGG | 0.454514 | 3_2:+53506456 | Msa0411290:five_prime_UTR |
| ACCCAAAGATGATGGAAAAT+GGG | 0.457309 | 3_2:+53505207 | Msa0411290:five_prime_UTR |
| TGAGAGAGTCTTTGTGGGAA+GGG | 0.458120 | 3_2:-53505319 | None:intergenic |
| CAATAAGACATTTGAAGGCC+TGG | 0.462143 | 3_2:-53510644 | None:intergenic |
| AGGGTAGGAGGTACAATGAA+AGG | 0.462869 | 3_2:+53510932 | Msa0411290:CDS |
| ACTCAAGAATTAACAAAGAT+GGG | 0.463051 | 3_2:+53505061 | Msa0411290:five_prime_UTR |
| GATGGAAAATGGGTTTGGAT+TGG | 0.463337 | 3_2:+53505217 | Msa0411290:five_prime_UTR |
| TTGATTAGATTTCAAGTCCA+TGG | 0.469427 | 3_2:+53510849 | Msa0411290:intron |
| TACTGTGAAGGAAATTCAAT+CGG | 0.477060 | 3_2:-53508458 | None:intergenic |
| ATTAACAAAGATGGGGAAAG+AGG | 0.477757 | 3_2:+53505069 | Msa0411290:five_prime_UTR |
| GGAAGCATACTCAAATCATA+AGG | 0.479194 | 3_2:+53508360 | Msa0411290:five_prime_UTR |
| GCCTTTGTGCAGGCTCCTCA+GGG | 0.487427 | 3_2:+53509248 | Msa0411290:CDS |
| CGACAATTAACTACCGTTGT+AGG | 0.488633 | 3_2:-53508566 | None:intergenic |
| CCTCTCCTTGTCTCAAACAA+TGG | 0.489487 | 3_2:-53505100 | None:intergenic |
| AGCAAGTGTTAGAATATTTG+AGG | 0.490626 | 3_2:+53511225 | Msa0411290:CDS |
| AGCTGGAGCCATGAATTCAT+TGG | 0.491316 | 3_2:+53508756 | Msa0411290:CDS |
| CATATGTAGGTGGATTTACA+TGG | 0.491789 | 3_2:+53509468 | Msa0411290:intron |
| ACACACAAATATGTCCACTT+TGG | 0.492778 | 3_2:-53506288 | None:intergenic |
| AAGGTCTTGAAGTATGCATC+TGG | 0.496793 | 3_2:-53506518 | None:intergenic |
| GTAGAAAATGCATCCAAGTT+GGG | 0.500272 | 3_2:+53508325 | Msa0411290:five_prime_UTR |
| GCCATTCTGCAAGAGATTCA+AGG | 0.500880 | 3_2:+53506481 | Msa0411290:five_prime_UTR |
| ACCTTGAATCTCTTGCAGAA+TGG | 0.504885 | 3_2:-53506482 | None:intergenic |
| ACATGAAATTGCCTTTGTGC+AGG | 0.505115 | 3_2:+53509238 | Msa0411290:CDS |
| CCTATGAGGAAAACACATCA+TGG | 0.509066 | 3_2:+53509685 | Msa0411290:CDS |
| CTTAATATACCTATCTATCA+AGG | 0.509432 | 3_2:+53511289 | Msa0411290:CDS |
| GTGTTAATCACCATTATTGG+TGG | 0.509771 | 3_2:-53506332 | None:intergenic |
| ATGATGCAATAATACAAAGT+TGG | 0.513377 | 3_2:-53510698 | None:intergenic |
| GAAGCCAATAAAGTAAGCAT+TGG | 0.515942 | 3_2:-53511139 | None:intergenic |
| TTGAGAGAGTCTTTGTGGGA+AGG | 0.517836 | 3_2:-53505320 | None:intergenic |
| TGTTGGGATGTTGTCAAGGA+AGG | 0.518974 | 3_2:+53511189 | Msa0411290:CDS |
| ACTCACTCTATAAACCCAAA+TGG | 0.520534 | 3_2:-53505179 | None:intergenic |
| GCAACCAGTTCCAATATACA+TGG | 0.521190 | 3_2:-53509511 | None:intergenic |
| AGTTACATACCCAAAGATGA+TGG | 0.521445 | 3_2:+53505199 | Msa0411290:five_prime_UTR |
| GGAACAAGGAAATGCCTTTG+TGG | 0.521542 | 3_2:-53510736 | None:intergenic |
| CCAACTATGACATATGCAAA+AGG | 0.524828 | 3_2:-53510878 | None:intergenic |
| GGGCCCATGTATATTGGAAC+TGG | 0.527050 | 3_2:+53509507 | Msa0411290:CDS |
| TTCTTCATGGATGAAGAAAA+GGG | 0.528326 | 3_2:+53509215 | Msa0411290:CDS |
| ACCTTTGAGAGAGTCTTTGT+GGG | 0.530918 | 3_2:-53505324 | None:intergenic |
| TGTGCCCTATTTACATACCT+TGG | 0.531650 | 3_2:+53511388 | Msa0411290:CDS |
| AGTAGAAAATGCATCCAAGT+TGG | 0.531734 | 3_2:+53508324 | Msa0411290:five_prime_UTR |
| AGTGGACATATTTGTGTGTA+CGG | 0.534171 | 3_2:+53506292 | Msa0411290:five_prime_UTR |
| AAGTATGCATCTGGCGACCT+AGG | 0.537937 | 3_2:-53506509 | None:intergenic |
| TCTTGCAAGTTGTACCTATG+AGG | 0.538293 | 3_2:+53509671 | Msa0411290:CDS |
| GTGGAATGAGTTAAGGATGT+GGG | 0.538687 | 3_2:+53510958 | Msa0411290:CDS |
| ATTAGAGAAACAAGAGGTCA+TGG | 0.539652 | 3_2:-53511501 | None:intergenic |
| GTCTTGTTGGGATGTTGTCA+AGG | 0.541016 | 3_2:+53511185 | Msa0411290:CDS |
| AGGCATTTCCTTGTTCCCAC+AGG | 0.541510 | 3_2:+53510742 | Msa0411290:CDS |
| TGTCATCAATGATTAGCAAT+GGG | 0.542769 | 3_2:+53509123 | Msa0411290:CDS |
| AAACACATCATGGGGAAAAG+AGG | 0.543820 | 3_2:+53509695 | Msa0411290:CDS |
| ATTAACATATTTACCTCATG+AGG | 0.548024 | 3_2:-53509320 | None:intergenic |
| AAACAATTCTCAATCTCTAA+GGG | 0.548566 | 3_2:+53509181 | Msa0411290:CDS |
| TTATTGTTACTATAATCTAT+GGG | 0.549266 | 3_2:+53510661 | Msa0411290:CDS |
| AGCTTTCATAATATCTGCTA+AGG | 0.549317 | 3_2:+53511054 | Msa0411290:CDS |
| GAGGTACAATGAAAGGTTGG+TGG | 0.555430 | 3_2:+53510939 | Msa0411290:CDS |
| TACACACTAAGCTTCTCTGT+TGG | 0.555790 | 3_2:-53506383 | None:intergenic |
| GTGTATCTTTCAGATGATGC+TGG | 0.557262 | 3_2:+53506401 | Msa0411290:five_prime_UTR |
| CTATGAGGAAAACACATCAT+GGG | 0.558232 | 3_2:+53509686 | Msa0411290:CDS |
| TAACACAGTATTATCTGTGA+TGG | 0.561776 | 3_2:+53506349 | Msa0411290:five_prime_UTR |
| TGAGAACATGCTACCCAAAG+TGG | 0.566397 | 3_2:+53506274 | Msa0411290:five_prime_UTR |
| GTGTCATCAATGATTAGCAA+TGG | 0.569343 | 3_2:+53509122 | Msa0411290:CDS |
| TAGGAGGTACAATGAAAGGT+TGG | 0.569415 | 3_2:+53510936 | Msa0411290:CDS |
| AAGGTTGGTGGAATGAGTTA+AGG | 0.570742 | 3_2:+53510951 | Msa0411290:CDS |
| GCTTTCGGATTGATCAGTCC+AGG | 0.575289 | 3_2:+53510626 | Msa0411290:CDS |
| GTTTGAGACAAGGAGAGGGA+AGG | 0.575519 | 3_2:+53505105 | Msa0411290:five_prime_UTR |
| ATGGCTTTGATGGATTAGGT+GGG | 0.580768 | 3_2:+53509487 | Msa0411290:CDS |
| CGAGCCAAATATACCAAGGT+GGG | 0.599351 | 3_2:-53508700 | None:intergenic |
| CACTTGTTCAACATAAGAGA+TGG | 0.602865 | 3_2:+53510552 | Msa0411290:CDS |
| CACATAAGAGATGCACTATG+TGG | 0.603443 | 3_2:+53509537 | Msa0411290:CDS |
| GACAATGCTAGAGATGAAGA+TGG | 0.605747 | 3_2:+53508667 | Msa0411290:five_prime_UTR |
| GGTGGAATGAGTTAAGGATG+TGG | 0.607586 | 3_2:+53510957 | Msa0411290:CDS |
| CATTGTTTGAGACAAGGAGA+GGG | 0.612024 | 3_2:+53505101 | Msa0411290:five_prime_UTR |
| CCATTGTTTGAGACAAGGAG+AGG | 0.612659 | 3_2:+53505100 | Msa0411290:five_prime_UTR |
| ACTACTATATGGTTGTGTAG+TGG | 0.617723 | 3_2:+53510421 | Msa0411290:CDS |
| TATTTCACTAAGATATGAGA+AGG | 0.617835 | 3_2:+53511090 | Msa0411290:CDS |
| ATTATCCATTGTTTGAGACA+AGG | 0.617883 | 3_2:+53505095 | Msa0411290:five_prime_UTR |
| GAAAATAGGGTTCCATCTAA+GGG | 0.618382 | 3_2:-53505290 | None:intergenic |
| CAACATAAGAGATGGTCTGA+AGG | 0.621250 | 3_2:+53510560 | Msa0411290:CDS |
| ACTATATGGTTGTGTAGTGG+AGG | 0.622506 | 3_2:+53510424 | Msa0411290:CDS |
| TCCATCTAAGGGCTTGACGA+AGG | 0.624315 | 3_2:-53505279 | None:intergenic |
| CAAGTTGGGTGAAGTACCGA+AGG | 0.628457 | 3_2:+53508339 | Msa0411290:five_prime_UTR |
| TCCCACAAAGACTCTCTCAA+AGG | 0.632973 | 3_2:+53505323 | Msa0411290:five_prime_UTR |
| ATACTTGAAGAATTGTGTCA+TGG | 0.633922 | 3_2:-53508420 | None:intergenic |
| AATTATCCAAATACCTACAA+CGG | 0.634182 | 3_2:+53508553 | Msa0411290:intron |
| CCTTTGTGGAGATAAAGTGA+AGG | 0.640236 | 3_2:-53510722 | None:intergenic |
| CTCAAGAATTAACAAAGATG+GGG | 0.641353 | 3_2:+53505062 | Msa0411290:five_prime_UTR |
| TATGAGGAAAACACATCATG+GGG | 0.644657 | 3_2:+53509687 | Msa0411290:CDS |
| TTGAACAAGTGATTCTGGCA+AGG | 0.652845 | 3_2:-53510540 | None:intergenic |
| TATGCAAAAGGTATGAACCA+TGG | 0.652918 | 3_2:-53510866 | None:intergenic |
| CTCACGAGCCAAATATACCA+AGG | 0.657691 | 3_2:-53508704 | None:intergenic |
| CCTTCACTTTATCTCCACAA+AGG | 0.659094 | 3_2:+53510722 | Msa0411290:CDS |
| AGAGATTCAAGGTTGAACCT+AGG | 0.664021 | 3_2:+53506492 | Msa0411290:five_prime_UTR |
| AGGCATATTAGAGAAACAAG+AGG | 0.671931 | 3_2:-53511507 | None:intergenic |
| ACGAGCCAAATATACCAAGG+TGG | 0.686997 | 3_2:-53508701 | None:intergenic |
| CAACCAGTTCCAATATACAT+GGG | 0.687371 | 3_2:-53509510 | None:intergenic |
| ACAAGGACATAATTTAACCA+AGG | 0.689055 | 3_2:-53511405 | None:intergenic |
| GTGATATTGGCAATGCCCTG+AGG | 0.690995 | 3_2:-53509263 | None:intergenic |
| GCCCTGAGGAGCCTGCACAA+AGG | 0.697500 | 3_2:-53509249 | None:intergenic |
| CTTTGTGGAGATAAAGTGAA+GGG | 0.698373 | 3_2:-53510721 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATATTAAATAAAATA+TGG | - | chr3_2:53505653-53505672 | None:intergenic | 0.0% |
| !!! | ATTTTTATTTTATTTTTTTA+AGG | + | chr3_2:53508918-53508937 | Msa0411290:intron | 0.0% |
| !!! | ATAACTAATTAAGTTTTTAA+AGG | + | chr3_2:53505772-53505791 | Msa0411290:intron | 10.0% |
| !!! | TAACTAATTAAGTTTTTAAA+GGG | + | chr3_2:53505773-53505792 | Msa0411290:intron | 10.0% |
| !! | TACTTAGAAAAATTATAAAT+GGG | - | chr3_2:53506205-53506224 | None:intergenic | 10.0% |
| !! | ATACTTAGAAAAATTATAAA+TGG | - | chr3_2:53506206-53506225 | None:intergenic | 10.0% |
| !!! | ATATTTTTAAGTGATTTTTA+TGG | - | chr3_2:53506704-53506723 | None:intergenic | 10.0% |
| !! | AAATATTTACATTTAGTATA+TGG | + | chr3_2:53507690-53507709 | Msa0411290:intron | 10.0% |
| !!! | AATTTTATTTTGTTTGTATT+TGG | - | chr3_2:53508131-53508150 | None:intergenic | 10.0% |
| !! | AAAATAAAAAATTTAGTACA+AGG | - | chr3_2:53508165-53508184 | None:intergenic | 10.0% |
| !!! | TTTTGTTATTTAATAATCTT+GGG | - | chr3_2:53508206-53508225 | None:intergenic | 10.0% |
| !!! | ATTTTGTTATTTAATAATCT+TGG | - | chr3_2:53508207-53508226 | None:intergenic | 10.0% |
| !! | AGATTATTAAATAACAAAAT+TGG | + | chr3_2:53508207-53508226 | Msa0411290:intron | 10.0% |
| !! | AATTTAATATAACAATTAGT+TGG | + | chr3_2:53508605-53508624 | Msa0411290:five_prime_UTR | 10.0% |
| !! | GTAAATTAAAAAAAAAAACT+AGG | + | chr3_2:53509752-53509771 | Msa0411290:intron | 10.0% |
| !!! | AATTTAAAATATGATAACTT+TGG | + | chr3_2:53509785-53509804 | Msa0411290:intron | 10.0% |
| !! | AAAAAAACATATATGTTTGT+TGG | - | chr3_2:53505582-53505601 | None:intergenic | 15.0% |
| !!! | AAACATATATGTTTTTTTAG+AGG | + | chr3_2:53505584-53505603 | Msa0411290:intron | 15.0% |
| !!! | GAAAAATAGATTTTGAAAAA+AGG | + | chr3_2:53506764-53506783 | Msa0411290:intron | 15.0% |
| !! | TGAATAATATTATTATGATG+TGG | - | chr3_2:53507106-53507125 | None:intergenic | 15.0% |
| !!! | TTTATACCCATTTTTTTTAT+AGG | - | chr3_2:53507437-53507456 | None:intergenic | 15.0% |
| !! | TATAAAAAAAATGGGTATAA+AGG | + | chr3_2:53507436-53507455 | Msa0411290:intron | 15.0% |
| !!! | TAAGATTATCTTTTTTTTTG+TGG | + | chr3_2:53507724-53507743 | Msa0411290:intron | 15.0% |
| !! | AATAAGATTATCTATAATGA+TGG | + | chr3_2:53507833-53507852 | Msa0411290:intron | 15.0% |
| !! | TATTAAATTATTAGCAAATC+AGG | - | chr3_2:53508594-53508613 | None:intergenic | 15.0% |
| !! | AGTATATATGTATTAATTGT+TGG | + | chr3_2:53508943-53508962 | Msa0411290:intron | 15.0% |
| !!! | TGTAATTAGTTTTATTTTGA+AGG | + | chr3_2:53509028-53509047 | Msa0411290:intron | 15.0% |
| !! | GTCCAAAAAAAAATAAAAAA+TGG | + | chr3_2:53509369-53509388 | Msa0411290:intron | 15.0% |
| !!! | TGCCATTTTTTATTTTTTTT+TGG | - | chr3_2:53509374-53509393 | None:intergenic | 15.0% |
| !!! | GATAAAGCATTAAATATTTT+TGG | + | chr3_2:53509933-53509952 | Msa0411290:intron | 15.0% |
| !! | CATATTTATTTAAATCTTTG+TGG | + | chr3_2:53509957-53509976 | Msa0411290:intron | 15.0% |
| !! | TTTCTACCAAAAAAAAATAT+TGG | + | chr3_2:53510090-53510109 | Msa0411290:intron | 15.0% |
| !!! | GTATAACCAATATTTTTTTT+TGG | - | chr3_2:53510099-53510118 | None:intergenic | 15.0% |
| !! | TTATTGTTACTATAATCTAT+GGG | + | chr3_2:53510661-53510680 | Msa0411290:CDS | 15.0% |
| !!! | GTAATTTGTTATTTTAATAG+TGG | + | chr3_2:53511467-53511486 | Msa0411290:three_prime_UTR | 15.0% |
| !! | ATCACAAGAAAAAAAGAAAT+AGG | - | chr3_2:53505534-53505553 | None:intergenic | 20.0% |
| !!! | ATGGATTGTAAATTAATTGA+GGG | + | chr3_2:53505870-53505889 | Msa0411290:intron | 20.0% |
| !!! | ATTATAAATGGGTTTTTCTA+TGG | - | chr3_2:53506194-53506213 | None:intergenic | 20.0% |
| !!! | CTATTTTTCTAAAACTAAGA+AGG | - | chr3_2:53506753-53506772 | None:intergenic | 20.0% |
| !!! | CTCTAAAATGAAAAACTATT+AGG | - | chr3_2:53506794-53506813 | None:intergenic | 20.0% |
| !! | TTCTAAACAAACACTTAAAA+AGG | + | chr3_2:53506835-53506854 | Msa0411290:intron | 20.0% |
| !!! | TTTTCTATTATTCTCTTCAT+AGG | + | chr3_2:53506921-53506940 | Msa0411290:intron | 20.0% |
| !! | GAAATATAAGTCCTATTTAT+AGG | + | chr3_2:53506959-53506978 | Msa0411290:intron | 20.0% |
| !! | ATACGAACCTATAAAAAAAA+TGG | + | chr3_2:53507427-53507446 | Msa0411290:intron | 20.0% |
| !! | TACGAACCTATAAAAAAAAT+GGG | + | chr3_2:53507428-53507447 | Msa0411290:intron | 20.0% |
| !! | ATATAGAGAAAAAGGAAAAA+AGG | + | chr3_2:53507862-53507881 | Msa0411290:intron | 20.0% |
| !! | TATAGAGAAAAAGGAAAAAA+GGG | + | chr3_2:53507863-53507882 | Msa0411290:intron | 20.0% |
| !! | AAATTTAGTACAAGGTAATT+AGG | - | chr3_2:53508157-53508176 | None:intergenic | 20.0% |
| !! | TAGGTATTTGGATAATTTAA+GGG | - | chr3_2:53508550-53508569 | None:intergenic | 20.0% |
| !! | TTGAAGTTATGATGAAATTT+GGG | - | chr3_2:53508736-53508755 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTATGATGAAATT+TGG | - | chr3_2:53508737-53508756 | None:intergenic | 20.0% |
| !! | TCGTGGATTTAAATTTAATT+AGG | + | chr3_2:53508852-53508871 | Msa0411290:intron | 20.0% |
| !!! | ATTAGTTTTATTTTGAAGGA+AGG | + | chr3_2:53509032-53509051 | Msa0411290:intron | 20.0% |
| !! | GTATATAGTGTATTAATTGT+TGG | + | chr3_2:53509081-53509100 | Msa0411290:intron | 20.0% |
| !!! | TATGTCATTTTTTGTGATAT+TGG | - | chr3_2:53509279-53509298 | None:intergenic | 20.0% |
| !! | ATCACAAAAAATGACATATA+TGG | + | chr3_2:53509281-53509300 | Msa0411290:CDS | 20.0% |
| !! | GTTCAAAATTTAGAAACAAT+TGG | - | chr3_2:53509447-53509466 | None:intergenic | 20.0% |
| !!! | TAAATTTTGAACACATATGT+AGG | + | chr3_2:53509455-53509474 | Msa0411290:intron | 20.0% |
| !!! | AAAAAAAAAAACTAGGGTTT+TGG | + | chr3_2:53509759-53509778 | Msa0411290:intron | 20.0% |
| !!! | AATATGATAACTTTGGTTTT+TGG | + | chr3_2:53509792-53509811 | Msa0411290:intron | 20.0% |
| !!! | ACAAAGTTTTTCCTTTATTT+TGG | + | chr3_2:53509817-53509836 | Msa0411290:intron | 20.0% |
| !!! | ATTTCTTTTTTGAAATAGAG+AGG | - | chr3_2:53509875-53509894 | None:intergenic | 20.0% |
| !! | CTATTTCAAAAAAGAAATAG+AGG | + | chr3_2:53509877-53509896 | Msa0411290:intron | 20.0% |
| !! | CTTATTGTTACTATAATCTA+TGG | + | chr3_2:53510660-53510679 | Msa0411290:CDS | 20.0% |
| ! | AACTCAAGAATTAACAAAGA+TGG | + | chr3_2:53505060-53505079 | Msa0411290:five_prime_UTR | 25.0% |
| ! | ACTCAAGAATTAACAAAGAT+GGG | + | chr3_2:53505061-53505080 | Msa0411290:five_prime_UTR | 25.0% |
| !!! | AACTATGGTTTGGTTTTTAT+TGG | + | chr3_2:53505254-53505273 | Msa0411290:five_prime_UTR | 25.0% |
| ! | ATAAAATATGGATGTATTGC+TGG | - | chr3_2:53505641-53505660 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGGGTATATCGAT+TGG | + | chr3_2:53505785-53505804 | Msa0411290:intron | 25.0% |
| !! | TGAATGAATTTTGTAGTGAA+TGG | + | chr3_2:53505840-53505859 | Msa0411290:intron | 25.0% |
| !! | ATTTTGTAGTGAATGGATAT+TGG | + | chr3_2:53505847-53505866 | Msa0411290:intron | 25.0% |
| !!! | GATGGATTGTAAATTAATTG+AGG | + | chr3_2:53505869-53505888 | Msa0411290:intron | 25.0% |
| ! | CACAAAAAGAAATTTCATCA+TGG | - | chr3_2:53506002-53506021 | None:intergenic | 25.0% |
| ! | TCATGATTGTTTCAACTATA+GGG | - | chr3_2:53506089-53506108 | None:intergenic | 25.0% |
| ! | TTCTTTCATTTGAAAACTAG+AGG | + | chr3_2:53506121-53506140 | Msa0411290:intron | 25.0% |
| ! | TCTTTCATTTGAAAACTAGA+GGG | + | chr3_2:53506122-53506141 | Msa0411290:intron | 25.0% |
| ! | AAAGCTCTTTAGCATTATTA+GGG | - | chr3_2:53506553-53506572 | None:intergenic | 25.0% |
| ! | AAAAGCTCTTTAGCATTATT+AGG | - | chr3_2:53506554-53506573 | None:intergenic | 25.0% |
| !! | TAATAATGCTAAAGAGCTTT+TGG | + | chr3_2:53506553-53506572 | Msa0411290:five_prime_UTR | 25.0% |
| ! | GAATTTCATCCAATAAGAAA+GGG | - | chr3_2:53507258-53507277 | None:intergenic | 25.0% |
| ! | TGAATTTCATCCAATAAGAA+AGG | - | chr3_2:53507259-53507278 | None:intergenic | 25.0% |
| ! | TTATTAGGTGAATTCTATGT+GGG | - | chr3_2:53507328-53507347 | None:intergenic | 25.0% |
| ! | TTTATTAGGTGAATTCTATG+TGG | - | chr3_2:53507329-53507348 | None:intergenic | 25.0% |
| ! | TTCACCTAATAAAAAAGTGA+TGG | + | chr3_2:53507336-53507355 | Msa0411290:intron | 25.0% |
| !!! | CTAACCATCACTTTTTTATT+AGG | - | chr3_2:53507343-53507362 | None:intergenic | 25.0% |
| !!! | GATTATCTTTTTTTTTGTGG+TGG | + | chr3_2:53507727-53507746 | Msa0411290:intron | 25.0% |
| ! | CATGATATATACAAGATTTG+GGG | - | chr3_2:53507765-53507784 | None:intergenic | 25.0% |
| ! | GCATGATATATACAAGATTT+GGG | - | chr3_2:53507766-53507785 | None:intergenic | 25.0% |
| ! | TGCATGATATATACAAGATT+TGG | - | chr3_2:53507767-53507786 | None:intergenic | 25.0% |
| ! | GGAAACATATATAGAGAAAA+AGG | + | chr3_2:53507854-53507873 | Msa0411290:intron | 25.0% |
| ! | TTATTAGTAAGATCTACCAT+TGG | + | chr3_2:53507896-53507915 | Msa0411290:intron | 25.0% |
| !! | CTTTTGCATTTAAGAAAGAT+GGG | - | chr3_2:53507942-53507961 | None:intergenic | 25.0% |
| !! | ACTTTTGCATTTAAGAAAGA+TGG | - | chr3_2:53507943-53507962 | None:intergenic | 25.0% |
| !! | ATCATAAGGAATTTTCTCAA+TGG | + | chr3_2:53508374-53508393 | Msa0411290:five_prime_UTR | 25.0% |
| !! | TCATAAGGAATTTTCTCAAT+GGG | + | chr3_2:53508375-53508394 | Msa0411290:five_prime_UTR | 25.0% |
| !!! | CATATTTTAAACTACTGTGA+AGG | - | chr3_2:53508473-53508492 | None:intergenic | 25.0% |
| ! | GTAGGTATTTGGATAATTTA+AGG | - | chr3_2:53508551-53508570 | None:intergenic | 25.0% |
| ! | AATTATCCAAATACCTACAA+CGG | + | chr3_2:53508553-53508572 | Msa0411290:intron | 25.0% |
| !!! | TTTTTTGATCAAGAATTCAC+TGG | + | chr3_2:53508796-53508815 | Msa0411290:intron | 25.0% |
| ! | TTAAATCCACGATCAAATAT+AGG | - | chr3_2:53508844-53508863 | None:intergenic | 25.0% |
| ! | AAACAATTCTCAATCTCTAA+GGG | + | chr3_2:53509181-53509200 | Msa0411290:CDS | 25.0% |
| ! | ACAAAAAATGACATATATGG+TGG | + | chr3_2:53509284-53509303 | Msa0411290:CDS | 25.0% |
| ! | ATTAACATATTTACCTCATG+AGG | - | chr3_2:53509323-53509342 | None:intergenic | 25.0% |
| ! | GTGATCTATACAAAATTGAT+TGG | + | chr3_2:53509571-53509590 | Msa0411290:CDS | 25.0% |
| ! | GAATTGAATGACCAAAATAA+AGG | - | chr3_2:53509831-53509850 | None:intergenic | 25.0% |
| ! | ATGACACTTTGTAACTAATA+GGG | - | chr3_2:53510040-53510059 | None:intergenic | 25.0% |
| ! | AATGACACTTTGTAACTAAT+AGG | - | chr3_2:53510041-53510060 | None:intergenic | 25.0% |
| ! | TTGCAAAAGCTATTGAATAT+TGG | + | chr3_2:53510059-53510078 | Msa0411290:intron | 25.0% |
| ! | TTGGTTATACAATATGTGTT+TGG | + | chr3_2:53510109-53510128 | Msa0411290:intron | 25.0% |
| ! | ATAATTGTCATGCAGTTTAA+TGG | + | chr3_2:53510170-53510189 | Msa0411290:intron | 25.0% |
| ! | GTTTACTACATATAAATGTG+TGG | + | chr3_2:53510266-53510285 | Msa0411290:intron | 25.0% |
| !! | TTCTCTTATGATAGTGAATT+AGG | + | chr3_2:53510289-53510308 | Msa0411290:intron | 25.0% |
| !! | GGATTATCTATTTTATGCAA+AGG | + | chr3_2:53510458-53510477 | Msa0411290:CDS | 25.0% |
| !! | TATCTATTTTATGCAAAGGA+TGG | + | chr3_2:53510462-53510481 | Msa0411290:CDS | 25.0% |
| ! | AGTAACAATAAGACATTTGA+AGG | - | chr3_2:53510652-53510671 | None:intergenic | 25.0% |
| ! | ATGATGCAATAATACAAAGT+TGG | - | chr3_2:53510701-53510720 | None:intergenic | 25.0% |
| ! | AAATCCAAAAAACTTCAACA+TGG | - | chr3_2:53511026-53511045 | None:intergenic | 25.0% |
| ! | TATTTCACTAAGATATGAGA+AGG | + | chr3_2:53511090-53511109 | Msa0411290:CDS | 25.0% |
| ! | AAGATATGAGAAGGAAATTA+TGG | + | chr3_2:53511099-53511118 | Msa0411290:CDS | 25.0% |
| !!! | TTGAATTTGTTTTGTCTTGT+TGG | + | chr3_2:53511172-53511191 | Msa0411290:CDS | 25.0% |
| !!! | TGAATTTGTTTTGTCTTGTT+GGG | + | chr3_2:53511173-53511192 | Msa0411290:CDS | 25.0% |
| !! | TTATTGCAAGTTTTACTATG+TGG | + | chr3_2:53511253-53511272 | Msa0411290:CDS | 25.0% |
| !! | TATTGCAAGTTTTACTATGT+GGG | + | chr3_2:53511254-53511273 | Msa0411290:CDS | 25.0% |
| ! | CTTAATATACCTATCTATCA+AGG | + | chr3_2:53511289-53511308 | Msa0411290:CDS | 25.0% |
| ! | TTAACCAAGGTATGTAAATA+GGG | - | chr3_2:53511395-53511414 | None:intergenic | 25.0% |
| ! | TTTAACCAAGGTATGTAAAT+AGG | - | chr3_2:53511396-53511415 | None:intergenic | 25.0% |
| ! | AGTAAAACTAAAAAGTGACA+AGG | - | chr3_2:53511425-53511444 | None:intergenic | 25.0% |
| CTCAAGAATTAACAAAGATG+GGG | + | chr3_2:53505062-53505081 | Msa0411290:five_prime_UTR | 30.0% | |
| ! | ATTATCCATTGTTTGAGACA+AGG | + | chr3_2:53505095-53505114 | Msa0411290:five_prime_UTR | 30.0% |
| ! | TTCTCTTTCACTTTGTTTGT+AGG | + | chr3_2:53505148-53505167 | Msa0411290:five_prime_UTR | 30.0% |
| AAATGCTAACAAGTGTCTTT+AGG | + | chr3_2:53505893-53505912 | Msa0411290:intron | 30.0% | |
| AATGCTAACAAGTGTCTTTA+GGG | + | chr3_2:53505894-53505913 | Msa0411290:intron | 30.0% | |
| GTTTAAGCATCAAAAGTAGT+AGG | + | chr3_2:53505921-53505940 | Msa0411290:intron | 30.0% | |
| ATTACTAATAAGTGCCCTAA+GGG | - | chr3_2:53506041-53506060 | None:intergenic | 30.0% | |
| TATTACTAATAAGTGCCCTA+AGG | - | chr3_2:53506042-53506061 | None:intergenic | 30.0% | |
| CATGATTGTTTCAACTATAG+GGG | - | chr3_2:53506088-53506107 | None:intergenic | 30.0% | |
| CTCATGATTGTTTCAACTAT+AGG | - | chr3_2:53506090-53506109 | None:intergenic | 30.0% | |
| ! | ATTATTGGTGGTTCAATATC+TGG | - | chr3_2:53506323-53506342 | None:intergenic | 30.0% |
| AGATATTGAACCACCAATAA+TGG | + | chr3_2:53506322-53506341 | Msa0411290:five_prime_UTR | 30.0% | |
| ACTGTGTTAATCACCATTAT+TGG | - | chr3_2:53506338-53506357 | None:intergenic | 30.0% | |
| TAACACAGTATTATCTGTGA+TGG | + | chr3_2:53506349-53506368 | Msa0411290:five_prime_UTR | 30.0% | |
| ! | TACATTTTATGCTCTCTTAG+AGG | + | chr3_2:53506433-53506452 | Msa0411290:five_prime_UTR | 30.0% |
| !! | CTTCTAAATTTGCTAAGCAT+TGG | + | chr3_2:53506456-53506475 | Msa0411290:five_prime_UTR | 30.0% |
| ATTATTAGGGTAAGTGTCTA+AGG | - | chr3_2:53506540-53506559 | None:intergenic | 30.0% | |
| TTACATATGTAGAGCAAAGT+TGG | - | chr3_2:53506599-53506618 | None:intergenic | 30.0% | |
| AACTTTGCTCTACATATGTA+AGG | + | chr3_2:53506598-53506617 | Msa0411290:intron | 30.0% | |
| ACTTTGCTCTACATATGTAA+GGG | + | chr3_2:53506599-53506618 | Msa0411290:intron | 30.0% | |
| CACATTTGTGTCCTATAAAT+AGG | - | chr3_2:53506973-53506992 | None:intergenic | 30.0% | |
| CTATTTATAGGACACAAATG+TGG | + | chr3_2:53506971-53506990 | Msa0411290:intron | 30.0% | |
| ATGCCTATATTCAATGTTAG+TGG | - | chr3_2:53507034-53507053 | None:intergenic | 30.0% | |
| GAATATAGGCATTCATTCAT+AGG | + | chr3_2:53507042-53507061 | Msa0411290:intron | 30.0% | |
| AAATCTCTGTTGGAAGATAA+AGG | + | chr3_2:53507195-53507214 | Msa0411290:intron | 30.0% | |
| TAAATGAGTCACATATGAAG+TGG | + | chr3_2:53507297-53507316 | Msa0411290:intron | 30.0% | |
| TTCAACTATAAATCGACCAT+TGG | - | chr3_2:53507668-53507687 | None:intergenic | 30.0% | |
| AAGTGAAAATTTGTCACGAT+AGG | + | chr3_2:53507971-53507990 | Msa0411290:intron | 30.0% | |
| !!! | CTTGTGTTCTTTTGTTTTAC+AGG | - | chr3_2:53508024-53508043 | None:intergenic | 30.0% |
| TGGTAGCAAATCAATTTCAT+AGG | - | chr3_2:53508111-53508130 | None:intergenic | 30.0% | |
| ATAGAGAATGTACCAAGATA+TGG | + | chr3_2:53508294-53508313 | Msa0411290:intron | 30.0% | |
| ATACTTGAAGAATTGTGTCA+TGG | - | chr3_2:53508423-53508442 | None:intergenic | 30.0% | |
| TACTGTGAAGGAAATTCAAT+CGG | - | chr3_2:53508461-53508480 | None:intergenic | 30.0% | |
| ATAGATACTGCTTCATAGAA+AGG | + | chr3_2:53508645-53508664 | Msa0411290:five_prime_UTR | 30.0% | |
| TTTCATCATAACTTCAAAGC+TGG | + | chr3_2:53508739-53508758 | Msa0411290:CDS | 30.0% | |
| !! | AAAGAGTACCAATGAATTCA+TGG | - | chr3_2:53508767-53508786 | None:intergenic | 30.0% |
| TGTCATCAATGATTAGCAAT+GGG | + | chr3_2:53509123-53509142 | Msa0411290:CDS | 30.0% | |
| CAAACAATTCTCAATCTCTA+AGG | + | chr3_2:53509180-53509199 | Msa0411290:CDS | 30.0% | |
| TTCTTCATGGATGAAGAAAA+GGG | + | chr3_2:53509215-53509234 | Msa0411290:CDS | 30.0% | |
| ! | TTATTTTCGTATACCTCATG+AGG | + | chr3_2:53509307-53509326 | Msa0411290:CDS | 30.0% |
| TGGTGTAAGTAAGCTATTAT+TGG | - | chr3_2:53509427-53509446 | None:intergenic | 30.0% | |
| ! | ATTTTGAACACATATGTAGG+TGG | + | chr3_2:53509458-53509477 | Msa0411290:intron | 30.0% |
| TGACACTTTGTAACTAATAG+GGG | - | chr3_2:53510039-53510058 | None:intergenic | 30.0% | |
| !! | ATCCTTTTTGTTATACGTCA+AGG | + | chr3_2:53510312-53510331 | Msa0411290:intron | 30.0% |
| ! | TGAATACTTTTCACTACAGA+TGG | + | chr3_2:53510397-53510416 | Msa0411290:intron | 30.0% |
| ! | GAATACTTTTCACTACAGAT+GGG | + | chr3_2:53510398-53510417 | Msa0411290:intron | 30.0% |
| TTATGTTGAACAAGTGATTC+TGG | - | chr3_2:53510548-53510567 | None:intergenic | 30.0% | |
| TTTCAAAGTTCAGTCCTATT+TGG | + | chr3_2:53510600-53510619 | Msa0411290:CDS | 30.0% | |
| ! | AGTAACATTTTCATACCTGT+GGG | - | chr3_2:53510760-53510779 | None:intergenic | 30.0% |
| ! | TAGTAACATTTTCATACCTG+TGG | - | chr3_2:53510761-53510780 | None:intergenic | 30.0% |
| GTATGAAAATGTTACTACCT+CGG | + | chr3_2:53510764-53510783 | Msa0411290:intron | 30.0% | |
| ! | TTGATTAGATTTCAAGTCCA+TGG | + | chr3_2:53510849-53510868 | Msa0411290:intron | 30.0% |
| !! | ACTGTTTGTTAGAGTTTTTG+AGG | + | chr3_2:53510912-53510931 | Msa0411290:CDS | 30.0% |
| !! | CTGTTTGTTAGAGTTTTTGA+GGG | + | chr3_2:53510913-53510932 | Msa0411290:CDS | 30.0% |
| AGCTTTCATAATATCTGCTA+AGG | + | chr3_2:53511054-53511073 | Msa0411290:CDS | 30.0% | |
| ATCTCCAATGCTTACTTTAT+TGG | + | chr3_2:53511135-53511154 | Msa0411290:CDS | 30.0% | |
| AGCAAGTGTTAGAATATTTG+AGG | + | chr3_2:53511225-53511244 | Msa0411290:CDS | 30.0% | |
| ! | AGTTTTACTATGTGGGATTT+TGG | + | chr3_2:53511261-53511280 | Msa0411290:CDS | 30.0% |
| ! | CTTTTCCTAAGGAAAGATAA+GGG | + | chr3_2:53511313-53511332 | Msa0411290:CDS | 30.0% |
| ACAAGGACATAATTTAACCA+AGG | - | chr3_2:53511408-53511427 | None:intergenic | 30.0% | |
| ! | TCTTGAGTTGTGATTCTCTA+TGG | - | chr3_2:53505049-53505068 | None:intergenic | 35.0% |
| ATTAACAAAGATGGGGAAAG+AGG | + | chr3_2:53505069-53505088 | Msa0411290:five_prime_UTR | 35.0% | |
| ! | TTGTAGGAATTTGCTCCATT+TGG | + | chr3_2:53505164-53505183 | Msa0411290:five_prime_UTR | 35.0% |
| ! | TGTAGGAATTTGCTCCATTT+GGG | + | chr3_2:53505165-53505184 | Msa0411290:five_prime_UTR | 35.0% |
| ACTCACTCTATAAACCCAAA+TGG | - | chr3_2:53505182-53505201 | None:intergenic | 35.0% | |
| AGTTACATACCCAAAGATGA+TGG | + | chr3_2:53505199-53505218 | Msa0411290:five_prime_UTR | 35.0% | |
| !! | TACCCAAAGATGATGGAAAA+TGG | + | chr3_2:53505206-53505225 | Msa0411290:five_prime_UTR | 35.0% |
| !! | ACCCAAAGATGATGGAAAAT+GGG | + | chr3_2:53505207-53505226 | Msa0411290:five_prime_UTR | 35.0% |
| ! | ACCCATTTTCCATCATCTTT+GGG | - | chr3_2:53505211-53505230 | None:intergenic | 35.0% |
| ! | AACCCATTTTCCATCATCTT+TGG | - | chr3_2:53505212-53505231 | None:intergenic | 35.0% |
| !! | AAGATGATGGAAAATGGGTT+TGG | + | chr3_2:53505212-53505231 | Msa0411290:five_prime_UTR | 35.0% |
| GAAAATAGGGTTCCATCTAA+GGG | - | chr3_2:53505293-53505312 | None:intergenic | 35.0% | |
| TGAAAATAGGGTTCCATCTA+AGG | - | chr3_2:53505294-53505313 | None:intergenic | 35.0% | |
| ! | TTAGATGGAACCCTATTTTC+AGG | + | chr3_2:53505293-53505312 | Msa0411290:five_prime_UTR | 35.0% |
| TTGTCGGTGTATAGCATATA+TGG | - | chr3_2:53505615-53505634 | None:intergenic | 35.0% | |
| ! | GGGTATATCGATTGGAAATT+TGG | + | chr3_2:53505793-53505812 | Msa0411290:intron | 35.0% |
| TGTAGTGAATGGATATTGGA+TGG | + | chr3_2:53505851-53505870 | Msa0411290:intron | 35.0% | |
| CACACAAATATGTCCACTTT+GGG | - | chr3_2:53506290-53506309 | None:intergenic | 35.0% | |
| ACACACAAATATGTCCACTT+TGG | - | chr3_2:53506291-53506310 | None:intergenic | 35.0% | |
| AGTGGACATATTTGTGTGTA+CGG | + | chr3_2:53506292-53506311 | Msa0411290:five_prime_UTR | 35.0% | |
| GTGTTAATCACCATTATTGG+TGG | - | chr3_2:53506335-53506354 | None:intergenic | 35.0% | |
| ! | TGGTTACTTTGTTACCTTGA+TGG | - | chr3_2:53506579-53506598 | None:intergenic | 35.0% |
| ! | GTGCCACTAACATTGAATAT+AGG | + | chr3_2:53507028-53507047 | Msa0411290:intron | 35.0% |
| TAAGTAACATAGAGAGCCTT+AGG | + | chr3_2:53507068-53507087 | Msa0411290:intron | 35.0% | |
| AAGTAACATAGAGAGCCTTA+GGG | + | chr3_2:53507069-53507088 | Msa0411290:intron | 35.0% | |
| AACGAACTCTAAATCTCTGT+TGG | + | chr3_2:53507185-53507204 | Msa0411290:intron | 35.0% | |
| !!! | TCTTTTTTTTTGTGGTGGTC+AGG | + | chr3_2:53507732-53507751 | Msa0411290:intron | 35.0% |
| !!! | CTTTTTTTTTGTGGTGGTCA+GGG | + | chr3_2:53507733-53507752 | Msa0411290:intron | 35.0% |
| CATATACTGTCTTGATCCAA+TGG | - | chr3_2:53507915-53507934 | None:intergenic | 35.0% | |
| TTGGATCAAGACAGTATATG+AGG | + | chr3_2:53507915-53507934 | Msa0411290:intron | 35.0% | |
| ! | TAGGTGTCATACAACAATTG+TGG | + | chr3_2:53507990-53508009 | Msa0411290:intron | 35.0% |
| AGTAGAAAATGCATCCAAGT+TGG | + | chr3_2:53508324-53508343 | Msa0411290:five_prime_UTR | 35.0% | |
| GTAGAAAATGCATCCAAGTT+GGG | + | chr3_2:53508325-53508344 | Msa0411290:five_prime_UTR | 35.0% | |
| TGATTTGAGTATGCTTCCTT+CGG | - | chr3_2:53508358-53508377 | None:intergenic | 35.0% | |
| ! | GGAAGCATACTCAAATCATA+AGG | + | chr3_2:53508360-53508379 | Msa0411290:five_prime_UTR | 35.0% |
| TAACTACCGTTGTAGGTATT+TGG | - | chr3_2:53508562-53508581 | None:intergenic | 35.0% | |
| ACTAAGCCTATATTTGATCG+TGG | + | chr3_2:53508835-53508854 | Msa0411290:intron | 35.0% | |
| GTGTCATCAATGATTAGCAA+TGG | + | chr3_2:53509122-53509141 | Msa0411290:CDS | 35.0% | |
| CTTCTTCATGGATGAAGAAA+AGG | + | chr3_2:53509214-53509233 | Msa0411290:CDS | 35.0% | |
| ! | CATATGTAGGTGGATTTACA+TGG | + | chr3_2:53509468-53509487 | Msa0411290:intron | 35.0% |
| !! | TTACATGGCTTTGATGGATT+AGG | + | chr3_2:53509483-53509502 | Msa0411290:CDS | 35.0% |
| CAACCAGTTCCAATATACAT+GGG | - | chr3_2:53509513-53509532 | None:intergenic | 35.0% | |
| CTATGAGGAAAACACATCAT+GGG | + | chr3_2:53509686-53509705 | Msa0411290:CDS | 35.0% | |
| TATGAGGAAAACACATCATG+GGG | + | chr3_2:53509687-53509706 | Msa0411290:CDS | 35.0% | |
| ACTGCATGACAATTATTGTG+AGG | - | chr3_2:53510166-53510185 | None:intergenic | 35.0% | |
| ATGCAGTTTAATGGCAGATA+TGG | + | chr3_2:53510179-53510198 | Msa0411290:intron | 35.0% | |
| CTCCTTGACGTATAACAAAA+AGG | - | chr3_2:53510317-53510336 | None:intergenic | 35.0% | |
| ACTACTATATGGTTGTGTAG+TGG | + | chr3_2:53510421-53510440 | Msa0411290:CDS | 35.0% | |
| ! | GTAGTGGAGGATATAATAAC+AGG | + | chr3_2:53510437-53510456 | Msa0411290:CDS | 35.0% |
| ! | CCTAAGAAAGCTTTTCTTGT+TGG | - | chr3_2:53510506-53510525 | None:intergenic | 35.0% |
| CCAACAAGAAAAGCTTTCTT+AGG | + | chr3_2:53510503-53510522 | Msa0411290:CDS | 35.0% | |
| CACTTGTTCAACATAAGAGA+TGG | + | chr3_2:53510552-53510571 | Msa0411290:CDS | 35.0% | |
| CTTTGTGGAGATAAAGTGAA+GGG | - | chr3_2:53510724-53510743 | None:intergenic | 35.0% | |
| !!! | TAGTTTTAAATTGCAGTCCG+AGG | - | chr3_2:53510784-53510803 | None:intergenic | 35.0% |
| ! | TATGCAAAAGGTATGAACCA+TGG | - | chr3_2:53510869-53510888 | None:intergenic | 35.0% |
| CCAACTATGACATATGCAAA+AGG | - | chr3_2:53510881-53510900 | None:intergenic | 35.0% | |
| ! | CCTTTTGCATATGTCATAGT+TGG | + | chr3_2:53510878-53510897 | Msa0411290:CDS | 35.0% |
| !! | TTGTTAGAGTTTTTGAGGGT+AGG | + | chr3_2:53510917-53510936 | Msa0411290:CDS | 35.0% |
| TGGCATCAACAAAAGCAAAA+AGG | - | chr3_2:53511006-53511025 | None:intergenic | 35.0% | |
| !!! | GATGCCATGTTGAAGTTTTT+TGG | + | chr3_2:53511019-53511038 | Msa0411290:CDS | 35.0% |
| GAGAAGGAAATTATGGAGTT+TGG | + | chr3_2:53511106-53511125 | Msa0411290:CDS | 35.0% | |
| GAAGCCAATAAAGTAAGCAT+TGG | - | chr3_2:53511142-53511161 | None:intergenic | 35.0% | |
| CCTTATCTTTCCTTAGGAAA+AGG | - | chr3_2:53511315-53511334 | None:intergenic | 35.0% | |
| ! | CCTTTTCCTAAGGAAAGATA+AGG | + | chr3_2:53511312-53511331 | Msa0411290:CDS | 35.0% |
| ATCTTCCCTTATCTTTCCTT+AGG | - | chr3_2:53511321-53511340 | None:intergenic | 35.0% | |
| GATTTAACTGCAACAGATCT+TGG | - | chr3_2:53511346-53511365 | None:intergenic | 35.0% | |
| ATTAGAGAAACAAGAGGTCA+TGG | - | chr3_2:53511504-53511523 | None:intergenic | 35.0% | |
| ! | CATTGTTTGAGACAAGGAGA+GGG | + | chr3_2:53505101-53505120 | Msa0411290:five_prime_UTR | 40.0% |
| ! | GATGGAAAATGGGTTTGGAT+TGG | + | chr3_2:53505217-53505236 | Msa0411290:five_prime_UTR | 40.0% |
| GATTGCTTTGTGCTGAACTA+TGG | + | chr3_2:53505239-53505258 | Msa0411290:five_prime_UTR | 40.0% | |
| CTTTGTGCTGAACTATGGTT+TGG | + | chr3_2:53505244-53505263 | Msa0411290:five_prime_UTR | 40.0% | |
| ! | ACCTTTGAGAGAGTCTTTGT+GGG | - | chr3_2:53505327-53505346 | None:intergenic | 40.0% |
| ! | TACCTTTGAGAGAGTCTTTG+TGG | - | chr3_2:53505328-53505347 | None:intergenic | 40.0% |
| GATGTATTGCTGGTGTTTGT+CGG | - | chr3_2:53505631-53505650 | None:intergenic | 40.0% | |
| ACTCCTTAAACAATGCCCTT+AGG | + | chr3_2:53506023-53506042 | Msa0411290:intron | 40.0% | |
| CTCCTTAAACAATGCCCTTA+GGG | + | chr3_2:53506024-53506043 | Msa0411290:intron | 40.0% | |
| TACACACTAAGCTTCTCTGT+TGG | - | chr3_2:53506386-53506405 | None:intergenic | 40.0% | |
| GTGTATCTTTCAGATGATGC+TGG | + | chr3_2:53506401-53506420 | Msa0411290:five_prime_UTR | 40.0% | |
| ACCTTGAATCTCTTGCAGAA+TGG | - | chr3_2:53506485-53506504 | None:intergenic | 40.0% | |
| AGAGATTCAAGGTTGAACCT+AGG | + | chr3_2:53506492-53506511 | Msa0411290:five_prime_UTR | 40.0% | |
| AAGGTCTTGAAGTATGCATC+TGG | - | chr3_2:53506521-53506540 | None:intergenic | 40.0% | |
| ! | TAAAGAGCTTTTGGCCATCA+AGG | + | chr3_2:53506562-53506581 | Msa0411290:five_prime_UTR | 40.0% |
| !! | GTTAGTGGCACTTAGTCTTT+TGG | - | chr3_2:53507019-53507038 | None:intergenic | 40.0% |
| ATAGAGAGCCTTAGGGAATA+TGG | + | chr3_2:53507076-53507095 | Msa0411290:intron | 40.0% | |
| TCTCTTGCACCCTTTCTTAT+TGG | + | chr3_2:53507246-53507265 | Msa0411290:intron | 40.0% | |
| ATTTGCCGCATAGCAACAAT+AGG | + | chr3_2:53507597-53507616 | Msa0411290:intron | 40.0% | |
| TTTGCCGCATAGCAACAATA+GGG | + | chr3_2:53507598-53507617 | Msa0411290:intron | 40.0% | |
| TCAACCCTATTGTTGCTATG+CGG | - | chr3_2:53507605-53507624 | None:intergenic | 40.0% | |
| TAGGGTTGAATGTAGTACGA+AGG | + | chr3_2:53507616-53507635 | Msa0411290:intron | 40.0% | |
| TGTAGTACGAAGGACTATAG+TGG | + | chr3_2:53507626-53507645 | Msa0411290:intron | 40.0% | |
| GACTATAGTGGCACAATATG+CGG | + | chr3_2:53507638-53507657 | Msa0411290:intron | 40.0% | |
| CTACTCGACTTTCCATATCT+TGG | - | chr3_2:53508309-53508328 | None:intergenic | 40.0% | |
| CGACAATTAACTACCGTTGT+AGG | - | chr3_2:53508569-53508588 | None:intergenic | 40.0% | |
| GACAATGCTAGAGATGAAGA+TGG | + | chr3_2:53508667-53508686 | Msa0411290:five_prime_UTR | 40.0% | |
| TATGCCCACCTTGGTATATT+TGG | + | chr3_2:53508696-53508715 | Msa0411290:exon | 40.0% | |
| ATGACACCCTTATCTGCATT+GGG | - | chr3_2:53508971-53508990 | None:intergenic | 40.0% | |
| TATGACACCCTTATCTGCAT+TGG | - | chr3_2:53508972-53508991 | None:intergenic | 40.0% | |
| TTGGTCCTGAATGCAGATAA+GGG | + | chr3_2:53509100-53509119 | Msa0411290:intron | 40.0% | |
| ACATGAAATTGCCTTTGTGC+AGG | + | chr3_2:53509238-53509257 | Msa0411290:CDS | 40.0% | |
| !! | GTGGATTTACATGGCTTTGA+TGG | + | chr3_2:53509477-53509496 | Msa0411290:CDS | 40.0% |
| !! | ATGGCTTTGATGGATTAGGT+GGG | + | chr3_2:53509487-53509506 | Msa0411290:CDS | 40.0% |
| GCAACCAGTTCCAATATACA+TGG | - | chr3_2:53509514-53509533 | None:intergenic | 40.0% | |
| CACATAAGAGATGCACTATG+TGG | + | chr3_2:53509537-53509556 | Msa0411290:CDS | 40.0% | |
| TCTTGCAAGTTGTACCTATG+AGG | + | chr3_2:53509671-53509690 | Msa0411290:CDS | 40.0% | |
| ! | CCATGATGTGTTTTCCTCAT+AGG | - | chr3_2:53509688-53509707 | None:intergenic | 40.0% |
| CCTATGAGGAAAACACATCA+TGG | + | chr3_2:53509685-53509704 | Msa0411290:CDS | 40.0% | |
| AAACACATCATGGGGAAAAG+AGG | + | chr3_2:53509695-53509714 | Msa0411290:CDS | 40.0% | |
| GATGAATGCAAGAACTTACG+AGG | + | chr3_2:53510131-53510150 | Msa0411290:intron | 40.0% | |
| CTACAGATGGGACTACTATA+TGG | + | chr3_2:53510410-53510429 | Msa0411290:intron | 40.0% | |
| ACTATATGGTTGTGTAGTGG+AGG | + | chr3_2:53510424-53510443 | Msa0411290:CDS | 40.0% | |
| TTGAACAAGTGATTCTGGCA+AGG | - | chr3_2:53510543-53510562 | None:intergenic | 40.0% | |
| CAACATAAGAGATGGTCTGA+AGG | + | chr3_2:53510560-53510579 | Msa0411290:CDS | 40.0% | |
| AGTCCTATTTGGTACGCTTT+CGG | + | chr3_2:53510611-53510630 | Msa0411290:CDS | 40.0% | |
| ! | AATCCGAAAGCGTACCAAAT+AGG | - | chr3_2:53510617-53510636 | None:intergenic | 40.0% |
| CAATAAGACATTTGAAGGCC+TGG | - | chr3_2:53510647-53510666 | None:intergenic | 40.0% | |
| CCTTTGTGGAGATAAAGTGA+AGG | - | chr3_2:53510725-53510744 | None:intergenic | 40.0% | |
| CCTTCACTTTATCTCCACAA+AGG | + | chr3_2:53510722-53510741 | Msa0411290:CDS | 40.0% | |
| ! | TTTTCATACCTGTGGGAACA+AGG | - | chr3_2:53510753-53510772 | None:intergenic | 40.0% |
| !! | TTAGAGTTTTTGAGGGTAGG+AGG | + | chr3_2:53510920-53510939 | Msa0411290:CDS | 40.0% |
| ! | TAGGAGGTACAATGAAAGGT+TGG | + | chr3_2:53510936-53510955 | Msa0411290:CDS | 40.0% |
| !! | AAGGTTGGTGGAATGAGTTA+AGG | + | chr3_2:53510951-53510970 | Msa0411290:CDS | 40.0% |
| GTGGAATGAGTTAAGGATGT+GGG | + | chr3_2:53510958-53510977 | Msa0411290:CDS | 40.0% | |
| TCAAGGAAGGTTGTGTTAAG+TGG | + | chr3_2:53511202-53511221 | Msa0411290:CDS | 40.0% | |
| AGGAAAAGGCCTTGATAGAT+AGG | - | chr3_2:53511301-53511320 | None:intergenic | 40.0% | |
| ! | TCTATCAAGGCCTTTTCCTA+AGG | + | chr3_2:53511302-53511321 | Msa0411290:CDS | 40.0% |
| TGTGCCCTATTTACATACCT+TGG | + | chr3_2:53511388-53511407 | Msa0411290:CDS | 40.0% | |
| CCTCTCCTTGTCTCAAACAA+TGG | - | chr3_2:53505103-53505122 | None:intergenic | 45.0% | |
| ! | CCATTGTTTGAGACAAGGAG+AGG | + | chr3_2:53505100-53505119 | Msa0411290:five_prime_UTR | 45.0% |
| ! | TTTGAGACAAGGAGAGGGAA+GGG | + | chr3_2:53505106-53505125 | Msa0411290:five_prime_UTR | 45.0% |
| GGAAGGGTTGCCTGAAAATA+GGG | - | chr3_2:53505306-53505325 | None:intergenic | 45.0% | |
| TGAGAGAGTCTTTGTGGGAA+GGG | - | chr3_2:53505322-53505341 | None:intergenic | 45.0% | |
| TTGAGAGAGTCTTTGTGGGA+AGG | - | chr3_2:53505323-53505342 | None:intergenic | 45.0% | |
| TCCCACAAAGACTCTCTCAA+AGG | + | chr3_2:53505323-53505342 | Msa0411290:five_prime_UTR | 45.0% | |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | - | chr3_2:53506029-53506048 | None:intergenic | 45.0% |
| TGAGAACATGCTACCCAAAG+TGG | + | chr3_2:53506274-53506293 | Msa0411290:five_prime_UTR | 45.0% | |
| GCCATTCTGCAAGAGATTCA+AGG | + | chr3_2:53506481-53506500 | Msa0411290:five_prime_UTR | 45.0% | |
| GTGGATGTCCATATTCCCTA+AGG | - | chr3_2:53507087-53507106 | None:intergenic | 45.0% | |
| CACAATATGCGGCTAACCAA+TGG | + | chr3_2:53507649-53507668 | Msa0411290:intron | 45.0% | |
| ! | CGAACTTAGCTCAGTTGGTA+GGG | - | chr3_2:53507794-53507813 | None:intergenic | 45.0% |
| TCGAACTTAGCTCAGTTGGT+AGG | - | chr3_2:53507795-53507814 | None:intergenic | 45.0% | |
| TCTCTCGAACTTAGCTCAGT+TGG | - | chr3_2:53507799-53507818 | None:intergenic | 45.0% | |
| !!! | TGGTTTTGTTATGCCCACCT+TGG | + | chr3_2:53508687-53508706 | Msa0411290:exon | 45.0% |
| CGAGCCAAATATACCAAGGT+GGG | - | chr3_2:53508703-53508722 | None:intergenic | 45.0% | |
| ACGAGCCAAATATACCAAGG+TGG | - | chr3_2:53508704-53508723 | None:intergenic | 45.0% | |
| CTCACGAGCCAAATATACCA+AGG | - | chr3_2:53508707-53508726 | None:intergenic | 45.0% | |
| AGCTGGAGCCATGAATTCAT+TGG | + | chr3_2:53508756-53508775 | Msa0411290:CDS | 45.0% | |
| TTGGTCCCCAATGCAGATAA+GGG | + | chr3_2:53508962-53508981 | Msa0411290:intron | 45.0% | |
| TGACACCCTTATCTGCATTG+GGG | - | chr3_2:53508970-53508989 | None:intergenic | 45.0% | |
| GTTGGTCCTGAATGCAGATA+AGG | + | chr3_2:53509099-53509118 | Msa0411290:intron | 45.0% | |
| TGACACCCTTATCTGCATTC+AGG | - | chr3_2:53509108-53509127 | None:intergenic | 45.0% | |
| GGATGCACTTTGCTTCTTCA+TGG | + | chr3_2:53509202-53509221 | Msa0411290:CDS | 45.0% | |
| !! | CATGGCTTTGATGGATTAGG+TGG | + | chr3_2:53509486-53509505 | Msa0411290:CDS | 45.0% |
| TTAGGTGGGCCCATGTATAT+TGG | + | chr3_2:53509501-53509520 | Msa0411290:CDS | 45.0% | |
| AGTGATTCTGGCAAGGTTGT+TGG | - | chr3_2:53510536-53510555 | None:intergenic | 45.0% | |
| GGAACAAGGAAATGCCTTTG+TGG | - | chr3_2:53510739-53510758 | None:intergenic | 45.0% | |
| ! | AGGGTAGGAGGTACAATGAA+AGG | + | chr3_2:53510932-53510951 | Msa0411290:CDS | 45.0% |
| GAGGTACAATGAAAGGTTGG+TGG | + | chr3_2:53510939-53510958 | Msa0411290:CDS | 45.0% | |
| GGTGGAATGAGTTAAGGATG+TGG | + | chr3_2:53510957-53510976 | Msa0411290:CDS | 45.0% | |
| ! | GTCTTGTTGGGATGTTGTCA+AGG | + | chr3_2:53511185-53511204 | Msa0411290:CDS | 45.0% |
| TGTTGGGATGTTGTCAAGGA+AGG | + | chr3_2:53511189-53511208 | Msa0411290:CDS | 45.0% | |
| !!! | TTATAACAATTTTTTTTTAA+AGG | - | chr3_2:53506638-53506657 | None:intergenic | 5.0% |
| !!! | TTACTTTTTTTATAAAAAAA+TGG | + | chr3_2:53507135-53507154 | Msa0411290:intron | 5.0% |
| !!! | TTTATTTTTTTTTAACTTTT+AGG | + | chr3_2:53507474-53507493 | Msa0411290:intron | 5.0% |
| !! | TAAATTAAAAAAAAAAACTA+GGG | + | chr3_2:53509753-53509772 | Msa0411290:intron | 5.0% |
| ! | GTTTGAGACAAGGAGAGGGA+AGG | + | chr3_2:53505105-53505124 | Msa0411290:five_prime_UTR | 50.0% |
| TCCTTCGTCAAGCCCTTAGA+TGG | + | chr3_2:53505278-53505297 | Msa0411290:five_prime_UTR | 50.0% | |
| TCCATCTAAGGGCTTGACGA+AGG | - | chr3_2:53505282-53505301 | None:intergenic | 50.0% | |
| GGGAAGGGTTGCCTGAAAAT+AGG | - | chr3_2:53505307-53505326 | None:intergenic | 50.0% | |
| AAGTATGCATCTGGCGACCT+AGG | - | chr3_2:53506512-53506531 | None:intergenic | 50.0% | |
| ! | GAAAGGGTGCAAGAGAGTGT+TGG | - | chr3_2:53507242-53507261 | None:intergenic | 50.0% |
| CTTCGGTACTTCACCCAACT+TGG | - | chr3_2:53508341-53508360 | None:intergenic | 50.0% | |
| !! | CAAGTTGGGTGAAGTACCGA+AGG | + | chr3_2:53508339-53508358 | Msa0411290:five_prime_UTR | 50.0% |
| GTTGGTCCCCAATGCAGATA+AGG | + | chr3_2:53508961-53508980 | Msa0411290:intron | 50.0% | |
| GTGATATTGGCAATGCCCTG+AGG | - | chr3_2:53509266-53509285 | None:intergenic | 50.0% | |
| GGGCCCATGTATATTGGAAC+TGG | + | chr3_2:53509507-53509526 | Msa0411290:CDS | 50.0% | |
| GCTTTCGGATTGATCAGTCC+AGG | + | chr3_2:53510626-53510645 | Msa0411290:CDS | 50.0% | |
| AGGCATTTCCTTGTTCCCAC+AGG | + | chr3_2:53510742-53510761 | Msa0411290:CDS | 50.0% | |
| TGCCTTTGTGCAGGCTCCTC+AGG | + | chr3_2:53509247-53509266 | Msa0411290:CDS | 60.0% | |
| GCCTTTGTGCAGGCTCCTCA+GGG | + | chr3_2:53509248-53509267 | Msa0411290:CDS | 60.0% | |
| GCCCTGAGGAGCCTGCACAA+AGG | - | chr3_2:53509252-53509271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 53504996 | 53511525 | 53504996 | ID=Msa0411290;Name=Msa0411290 |
| chr3_2 | mRNA | 53504996 | 53511525 | 53504996 | ID=Msa0411290-mRNA-1;Parent=Msa0411290;Name=Msa0411290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1030|1|1|1|0.85|0.75|8|111|479 |
| chr3_2 | exon | 53504996 | 53505344 | 53504996 | ID=Msa0411290-mRNA-1:exon:10694;Parent=Msa0411290-mRNA-1 |
| chr3_2 | exon | 53506271 | 53506583 | 53506271 | ID=Msa0411290-mRNA-1:exon:10695;Parent=Msa0411290-mRNA-1 |
| chr3_2 | exon | 53508298 | 53508527 | 53508298 | ID=Msa0411290-mRNA-1:exon:10696;Parent=Msa0411290-mRNA-1 |
| chr3_2 | exon | 53508559 | 53508777 | 53508559 | ID=Msa0411290-mRNA-1:exon:10697;Parent=Msa0411290-mRNA-1 |
| chr3_2 | exon | 53509116 | 53509328 | 53509116 | ID=Msa0411290-mRNA-1:exon:10698;Parent=Msa0411290-mRNA-1 |
| chr3_2 | exon | 53509477 | 53509716 | 53509477 | ID=Msa0411290-mRNA-1:exon:10699;Parent=Msa0411290-mRNA-1 |
| chr3_2 | exon | 53510416 | 53510763 | 53510416 | ID=Msa0411290-mRNA-1:exon:10700;Parent=Msa0411290-mRNA-1 |
| chr3_2 | exon | 53510857 | 53511525 | 53510857 | ID=Msa0411290-mRNA-1:exon:10701;Parent=Msa0411290-mRNA-1 |
| chr3_2 | five_prime_UTR | 53504996 | 53505344 | 53504996 | ID=Msa0411290-mRNA-1:five_prime_utr;Parent=Msa0411290-mRNA-1 |
| chr3_2 | five_prime_UTR | 53506271 | 53506583 | 53506271 | ID=Msa0411290-mRNA-1:five_prime_utr;Parent=Msa0411290-mRNA-1 |
| chr3_2 | five_prime_UTR | 53508298 | 53508527 | 53508298 | ID=Msa0411290-mRNA-1:five_prime_utr;Parent=Msa0411290-mRNA-1 |
| chr3_2 | five_prime_UTR | 53508559 | 53508696 | 53508559 | ID=Msa0411290-mRNA-1:five_prime_utr;Parent=Msa0411290-mRNA-1 |
| chr3_2 | CDS | 53508697 | 53508777 | 53508697 | ID=Msa0411290-mRNA-1:cds;Parent=Msa0411290-mRNA-1 |
| chr3_2 | CDS | 53509116 | 53509328 | 53509116 | ID=Msa0411290-mRNA-1:cds;Parent=Msa0411290-mRNA-1 |
| chr3_2 | CDS | 53509477 | 53509716 | 53509477 | ID=Msa0411290-mRNA-1:cds;Parent=Msa0411290-mRNA-1 |
| chr3_2 | CDS | 53510416 | 53510763 | 53510416 | ID=Msa0411290-mRNA-1:cds;Parent=Msa0411290-mRNA-1 |
| chr3_2 | CDS | 53510857 | 53511414 | 53510857 | ID=Msa0411290-mRNA-1:cds;Parent=Msa0411290-mRNA-1 |
| chr3_2 | three_prime_UTR | 53511415 | 53511525 | 53511415 | ID=Msa0411290-mRNA-1:three_prime_utr;Parent=Msa0411290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
